Psyllid ID: psy597
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | 2.2.26 [Sep-21-2011] | |||||||
| P46824 | 508 | Kinesin light chain OS=Dr | yes | N/A | 0.835 | 0.897 | 0.667 | 0.0 | |
| P46825 | 571 | Kinesin light chain OS=Do | N/A | N/A | 0.875 | 0.837 | 0.638 | 1e-178 | |
| P37285 | 560 | Kinesin light chain 1 OS= | yes | N/A | 0.836 | 0.816 | 0.633 | 1e-170 | |
| Q07866 | 573 | Kinesin light chain 1 OS= | no | N/A | 0.836 | 0.797 | 0.633 | 1e-170 | |
| Q5R581 | 560 | Kinesin light chain 1 OS= | yes | N/A | 0.836 | 0.816 | 0.631 | 1e-169 | |
| O88447 | 541 | Kinesin light chain 1 OS= | no | N/A | 0.833 | 0.841 | 0.618 | 1e-164 | |
| Q9H0B6 | 622 | Kinesin light chain 2 OS= | no | N/A | 0.833 | 0.731 | 0.607 | 1e-162 | |
| Q05090 | 686 | Kinesin light chain OS=St | yes | N/A | 0.844 | 0.672 | 0.604 | 1e-161 | |
| Q9NSK0 | 619 | Kinesin light chain 4 OS= | no | N/A | 0.836 | 0.738 | 0.600 | 1e-161 | |
| O88448 | 599 | Kinesin light chain 2 OS= | no | N/A | 0.829 | 0.756 | 0.603 | 1e-159 |
| >sp|P46824|KLC_DROME Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/506 (66%), Positives = 387/506 (76%), Gaps = 50/506 (9%)
Query: 19 MTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIEL 78
MT M+Q+EI+TNTKTV QGLEAL+ EH SI+N ++E Q + EK +M++ ++E IEL
Sbjct: 1 MTQMSQDEIITNTKTVLQGLEALRVEHVSIMNGIAEVQK----DNEKSDMLRKNIENIEL 56
Query: 79 GLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQL 138
GL+EAQVM AL HLQN+EAEK KL+TQVRRL QENAWLRDELANTQQK Q+SEQ +QL
Sbjct: 57 GLSEAQVMMALTSHLQNIEAEKHKLKTQVRRLHQENAWLRDELANTQQKFQASEQLVAQL 116
Query: 139 EEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPP 198
EEEKKHLEFM+S++KYD + + D+ ++D PVV+LFPDE+N+DR+N+SPTPP
Sbjct: 117 EEEKKHLEFMASVKKYDENQEQDDACDKSRTD------PVVELFPDEENEDRHNMSPTPP 170
Query: 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETL 258
SQFA Q +GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE+TSG
Sbjct: 171 SQFANQT-SGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSG-------- 221
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
HDHPDVATMLNILALVYRDQNKYKEAANLLND
Sbjct: 222 ----------------------------HDHPDVATMLNILALVYRDQNKYKEAANLLND 253
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
AL+IR KTLGENH AVAATLNNLAVLYGKRGKYK+AEPLCKRALEIREKVLGK+HPDVAK
Sbjct: 254 ALSIRGKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREKVLGKDHPDVAK 313
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
QLNNLALLCQNQ KY+EVE+YYQRAL+IYE KLGPDD NVAKTKNNLA CYLKQG+Y EA
Sbjct: 314 QLNNLALLCQNQGKYDEVEKYYQRALDIYESKLGPDDPNVAKTKNNLAGCYLKQGRYTEA 373
Query: 439 EILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKLGPDD 495
EILYKQVLTRAHEREFGA D NKPIWQ +R+++K NRE + D
Sbjct: 374 EILYKQVLTRAHEREFGAIDSKNKPIWQVAEEREEHKFDNRENTPYGEYGGWHKAAKVDS 433
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEIL 521
V T NL + Y +QG ++ AE L
Sbjct: 434 PTVTTTLKNLGALYRRQGMFEAAETL 459
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Drosophila melanogaster (taxid: 7227) |
| >sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1 | Back alignment and function description |
|---|
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 341/534 (63%), Positives = 394/534 (73%), Gaps = 56/534 (10%)
Query: 1 MTKTLNEYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET----- 55
+T+T+ YR+KKIE IGKMT ++QEEI++NTKTV QGL+ LKNEH ILNSL +
Sbjct: 3 VTQTVKSYRIKKIEEIGKMTALSQEEIISNTKTVIQGLDTLKNEHNQILNSLLTSMKTIR 62
Query: 56 -QHGGP-VEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQE 113
++G + EEK N++K S++ IELGL EAQVM ALA HLQ+ EAEKQKLR QVRRL QE
Sbjct: 63 KENGDTNLVEEKANILKKSVDSIELGLGEAQVMMALANHLQHTEAEKQKLRAQVRRLCQE 122
Query: 114 NAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHK 173
NAWLRDELANTQQKLQ SEQ + +EEEKKHLEFM+ ++KYD++ Q +++ +
Sbjct: 123 NAWLRDELANTQQKLQMSEQKVATIEEEKKHLEFMNEMKKYDTN-------EAQVNEEKE 175
Query: 174 QDDPVVDL-FPDEDNDDRNN--LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGR 230
+ +DL FPD+D+D LSPT PS AQ + G EIPARLRTLHNLVIQYASQGR
Sbjct: 176 SEQSSLDLGFPDDDDDGGQPEVLSPTQPSAMAQAASGGCEIPARLRTLHNLVIQYASQGR 235
Query: 231 YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290
YEVAVPLCKQALEDLEKTSG HDHP
Sbjct: 236 YEVAVPLCKQALEDLEKTSG------------------------------------HDHP 259
Query: 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK 350
DVATMLNILALVYRDQ KYKEAANLLNDAL IREKTLG +H AVAATLNNLAVLYGKRGK
Sbjct: 260 DVATMLNILALVYRDQGKYKEAANLLNDALGIREKTLGPDHPAVAATLNNLAVLYGKRGK 319
Query: 351 YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410
YK+AEPLCKRAL IREKVLGK+HPDVAKQLNNLALLCQNQ KYEEVERYYQRALEIY+ +
Sbjct: 320 YKDAEPLCKRALVIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVERYYQRALEIYQKE 379
Query: 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW---QD 467
LGPDD NVAKTKNNLAS YLKQGKYK+AEILYK+VLTRAHE+EFG D DNKPIW ++
Sbjct: 380 LGPDDPNVAKTKNNLASAYLKQGKYKQAEILYKEVLTRAHEKEFGKVDDDNKPIWMQAEE 439
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
R++NKAK ++ Q + + D V T NL + Y +QGKY+ AE L
Sbjct: 440 REENKAKYKDGAPQPDYGSWLKAVKVDSPTVTTTLKNLGALYRRQGKYEAAETL 493
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Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Loligo pealeii (taxid: 1051067) |
| >sp|P37285|KLC1_RAT Kinesin light chain 1 OS=Rattus norvegicus GN=Klc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 321/507 (63%), Positives = 368/507 (72%), Gaps = 50/507 (9%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK +M++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSSMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ SD K+ P+ DLFP++++D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDSDSSKE--PLDDLFPNDEDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG- 248
Query: 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKE 311
HDHPDVATMLNILALVYRDQNKYK+
Sbjct: 249 -----------------------------------HDHPDVATMLNILALVYRDQNKYKD 273
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
AANLLNDAL IREKTLG +H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK
Sbjct: 274 AANLLNDALAIREKTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 333
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431
+HPDVAKQLNNLALLCQNQ KYEEVE YYQRALEIY+ KLGPDD NVAKTKNNLASCYLK
Sbjct: 334 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 393
Query: 432 QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW---QDRQKNKAKNREKYYQRALEIYE 488
QGK+K+AE LYK++LTRAHEREFG+ D +NKPIW ++R++ K K ++ +
Sbjct: 394 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGSSFGEYGGWY 453
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKY 515
D V T NL + Y +QGK+
Sbjct: 454 KACKVDSPTVTTTLKNLGALYRRQGKF 480
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 321/507 (63%), Positives = 369/507 (72%), Gaps = 50/507 (9%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++++D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDEDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG- 248
Query: 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKE 311
HDHPDVATMLNILALVYRDQNKYK+
Sbjct: 249 -----------------------------------HDHPDVATMLNILALVYRDQNKYKD 273
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
AANLLNDAL IREKTLG++H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK
Sbjct: 274 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 333
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431
+HPDVAKQLNNLALLCQNQ KYEEVE YYQRALEIY+ KLGPDD NVAKTKNNLASCYLK
Sbjct: 334 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 393
Query: 432 QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW---QDRQKNKAKNREKYYQRALEIYE 488
QGK+K+AE LYK++LTRAHEREFG+ D +NKPIW ++R++ K K ++ +
Sbjct: 394 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 453
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKY 515
D V T NL + Y +QGK+
Sbjct: 454 KACKVDSPTVTTTLKNLGALYRRQGKF 480
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust.
Identities = 320/507 (63%), Positives = 368/507 (72%), Gaps = 50/507 (9%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++++D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDEDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGDYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG- 248
Query: 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKE 311
HDHPDVATMLNILALVYRDQNKYK+
Sbjct: 249 -----------------------------------HDHPDVATMLNILALVYRDQNKYKD 273
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
AANLLNDAL IREKTLG++H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK
Sbjct: 274 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 333
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431
+HPDVAKQLNNLALLCQNQ KYEEVE YYQRALEIY+ KLGPDD NVAKTKNNLASCYLK
Sbjct: 334 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 393
Query: 432 QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW---QDRQKNKAKNREKYYQRALEIYE 488
QGK+K+AE LYK++LTRAHEREFG+ D +NKPIW ++R++ K K ++ +
Sbjct: 394 QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 453
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKY 515
D V T NL + Y +QGK+
Sbjct: 454 KACKVDSPTVTTTLKNLGALYRRQGKF 480
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Pongo abelii (taxid: 9601) |
| >sp|O88447|KLC1_MOUSE Kinesin light chain 1 OS=Mus musculus GN=Klc1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 578 bits (1491), Expect = e-164, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 365/508 (71%), Gaps = 53/508 (10%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK +M++
Sbjct: 15 KLENVTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSSMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQ +R QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQNVRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ SD K+ P+ DLFP+++++
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDSDSSKE--PLDDLFPNDEDEPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ + S A GYEIPARLRTLHNLVIQYASQGRYEVAVP CKQALEDLEKTSG
Sbjct: 190 GIQHSDSS--AAAARQGYEIPARLRTLHNLVIQYASQGRYEVAVPSCKQALEDLEKTSG- 246
Query: 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKE 311
HDHPDVATMLNILALVYRDQNKYK+
Sbjct: 247 -----------------------------------HDHPDVATMLNILALVYRDQNKYKD 271
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
AANLLNDAL IREKTLG +H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK
Sbjct: 272 AANLLNDALAIREKTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 331
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS-NVAKTKNNLASCYL 430
+HPDVAKQLNNLALLCQNQ KYEEVE YYQRAL IY+ KLGPD + NVAKTKNNLASCYL
Sbjct: 332 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALGIYQTKLGPDRTPNVAKTKNNLASCYL 391
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW---QDRQKNKAKNREKYYQRALEIY 487
KQGK+K+AE LYK++LTRAHE EFG+ D +NKPIW ++R++ K K ++ +
Sbjct: 392 KQGKFKQAETLYKEILTRAHEAEFGSVDDENKPIWMHAEEREECKGKQKDGSAFGEYGGW 451
Query: 488 ELKLGPDDSNVAKTKNNLASCYLKQGKY 515
D V T NL + Y +QGK+
Sbjct: 452 YKACKVDSPTVTTTLKNLGALYRRQGKF 479
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Mus musculus (taxid: 10090) |
| >sp|Q9H0B6|KLC2_HUMAN Kinesin light chain 2 OS=Homo sapiens GN=KLC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1474), Expect = e-162, Method: Compositional matrix adjust.
Identities = 307/505 (60%), Positives = 357/505 (70%), Gaps = 50/505 (9%)
Query: 22 MNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGG--PVEEEKRNMVKNSLEIIELG 79
++Q+EI+ TK V QGLE L+ EH ++L L + G P +E+ +++ SLE IELG
Sbjct: 12 LSQDEIVLGTKAVIQGLETLRGEHRALLAPLVAPEAGEAEPGSQERCILLRRSLEAIELG 71
Query: 80 LNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLE 139
L EAQV+ AL+ HL VE+EKQKLR QVRRLVQEN WLR+ELA TQQKLQ SEQA +QLE
Sbjct: 72 LGEAQVILALSSHLGAVESEKQKLRAQVRRLVQENQWLREELAGTQQKLQRSEQAVAQLE 131
Query: 140 EEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPS 199
EEK+HL FMS IRK D D +E GD D + DLFP N+D + +P+P
Sbjct: 132 EEKQHLLFMSQIRKLDEDASPNEEKGDVPKDT------LDDLFP---NEDEQSPAPSPGG 182
Query: 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE 259
+ GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 183 GDVSGQHGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG--------- 233
Query: 260 DCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDA 319
HDHPDVATMLNILALVYRDQNKYKEAA+LLNDA
Sbjct: 234 ---------------------------HDHPDVATMLNILALVYRDQNKYKEAAHLLNDA 266
Query: 320 LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379
L IREKTLG++H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK HPDVAKQ
Sbjct: 267 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 326
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
L+NLALLCQNQ K EEVE YY+RALEIY +LGPDD NVAKTKNNLASCYLKQGKY++AE
Sbjct: 327 LSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 386
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIW---QDRQKNKAKNREKYYQRALEIYELKLGPDDS 496
LYK++LTRAHE+EFG+ +GDNKPIW ++R+++K K R+ + D
Sbjct: 387 TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 446
Query: 497 NVAKTKNNLASCYLKQGKYKEAEIL 521
V T +L + Y +QGK + A L
Sbjct: 447 TVNTTLRSLGALYRRQGKLEAAHTL 471
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1466), Expect = e-161, Method: Compositional matrix adjust.
Identities = 320/529 (60%), Positives = 362/529 (68%), Gaps = 68/529 (12%)
Query: 15 SIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSL--------SETQHGGPVEEEKR 66
S G ++QE+I+T T+ V +GLE LKNEH ILNSL +T + EEK
Sbjct: 12 SGGGQGNLSQEQIITGTREVIKGLEQLKNEHNDILNSLYQSLKMLKKDTPGDSNLVEEKT 71
Query: 67 NMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126
++++ SLE +ELGL EA+VM AL HL VEAEKQKLR QVRRLVQEN WLRDELA TQQ
Sbjct: 72 DIIEKSLESLELGLGEAKVMMALGHHLNMVEAEKQKLRAQVRRLVQENTWLRDELAATQQ 131
Query: 127 KLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDED 186
KLQ+SEQ + LE + KHLE+M+SI+KYD D DE + DP+ FP++D
Sbjct: 132 KLQTSEQNLADLEVKYKHLEYMNSIKKYDEDRTPDEEA--------SSSDPLDLGFPEDD 183
Query: 187 NDDRNNLSPTPPSQFAQQVNA---GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALE 243
+ + + S P + V+A GYEIPARLRTLHNLVIQYASQ RYEVAVPLCKQALE
Sbjct: 184 DGGQADESYPQPQTGSGSVSAAAGGYEIPARLRTLHNLVIQYASQSRYEVAVPLCKQALE 243
Query: 244 DLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY 303
DLEKTSG HDHPDVATMLNILALVY
Sbjct: 244 DLEKTSG------------------------------------HDHPDVATMLNILALVY 267
Query: 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
RDQNKYKEA NLL+DAL IREKTLG +H AVAATLNNLAVLYGKRGKYKEAEPLCKRALE
Sbjct: 268 RDQNKYKEAGNLLHDALAIREKTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 327
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
IREKVLGK+HPDVAKQLNNLALLCQNQ KYEEVE YYQRALEIYE KLGPDD NVAKTKN
Sbjct: 328 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEWYYQRALEIYEKKLGPDDPNVAKTKN 387
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFG--ACDGDNKPIW----QDRQKNKAKNRE 477
NLA+ YLKQGKYK AE LYKQVLTRAHEREFG A D DNKPIW + +K K K+
Sbjct: 388 NLAAAYLKQGKYKAAETLYKQVLTRAHEREFGLSADDKDNKPIWMQAEEREEKGKFKDNA 447
Query: 478 KY-----YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
Y + +A ++ V T NL + Y +QGKY AEIL
Sbjct: 448 PYGDYGGWHKAAKVDSRSR--SSPTVTTTLKNLGALYRRQGKYDAAEIL 494
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Strongylocentrotus purpuratus (taxid: 7668) |
| >sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 308/513 (60%), Positives = 363/513 (70%), Gaps = 56/513 (10%)
Query: 22 MNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET----QHGGPVE---EEKRNMVKNSLE 74
++QEEI+ +T+ V QGLEAL++EH ++L SLS+T Q GG E EK ++ S+E
Sbjct: 17 LSQEEILGSTRLVSQGLEALRSEHQAVLQSLSQTIECLQQGGHEEGLVHEKARQLRRSME 76
Query: 75 IIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQA 134
IELGL+EAQVM ALA HL VE+EKQKLR QVRRL QEN WLRDELA TQQ+LQ SEQA
Sbjct: 77 NIELGLSEAQVMLALASHLSTVESEKQKLRAQVRRLCQENQWLRDELAGTQQRLQRSEQA 136
Query: 135 NSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDD-RNNL 193
+QLEEEKKHLEF+ +R+YD D S +++ D K D + DLFP+E+ +D N L
Sbjct: 137 VAQLEEEKKHLEFLGQLRQYDED---GHTSEEKEGDATK--DSLDDLFPNEEEEDPSNGL 191
Query: 194 SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYE 253
S + AQQ GYEIPARLRTLHNLVIQYA+QGRYEVAVPLCKQALEDLE+TSG+
Sbjct: 192 SRGQGATAAQQ--GGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGR-- 247
Query: 254 AAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAA 313
HPDVATMLNILALVYRDQNKYKEAA
Sbjct: 248 ----------------------------------GHPDVATMLNILALVYRDQNKYKEAA 273
Query: 314 NLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373
+LLNDAL+IRE TLG +H AVAATLNNLAVLYGKRGKYKEAEPLC+RALEIREKVLG H
Sbjct: 274 HLLNDALSIRESTLGPDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTNH 333
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
PDVAKQLNNLALLCQNQ KYE VERYYQRAL IYE +LGPD+ NVA+TKNNLASCYLKQG
Sbjct: 334 PDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVARTKNNLASCYLKQG 393
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYEL---- 489
KY EAE LYK++LTRAH +EFG+ D D+KPIW ++ + ++ ++++ E
Sbjct: 394 KYAEAETLYKEILTRAHVQEFGSVDDDHKPIWMHAEEREEMSKSRHHEGGTPYAEYGGWY 453
Query: 490 -KLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
V T NL + Y +QGK + AE L
Sbjct: 454 KACKVSSPTVNTTLRNLGALYRRQGKLEAAETL 486
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|O88448|KLC2_MOUSE Kinesin light chain 2 OS=Mus musculus GN=Klc2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 305/505 (60%), Positives = 359/505 (71%), Gaps = 52/505 (10%)
Query: 22 MNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGG--PVEEEKRNMVKNSLEIIELG 79
++Q+EI+ TK V QGLE L+ EH ++L L+ + G P +E+ +++ SLE IELG
Sbjct: 12 LSQDEIVLGTKAVIQGLETLRGEHRALLAPLASHEAGEAEPGSQERCLLLRRSLEAIELG 71
Query: 80 LNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLE 139
L EAQV+ AL+ HL VE+EKQKLR QVRRLVQEN WLR+ELA TQQKLQ SEQA +QLE
Sbjct: 72 LGEAQVILALSSHLGAVESEKQKLRAQVRRLVQENQWLREELAGTQQKLQRSEQAVAQLE 131
Query: 140 EEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPS 199
EEK+HL FMS IRK D + +E K D K D + DLFP N+D + +P+P
Sbjct: 132 EEKQHLLFMSQIRKLDEMLPQEE-----KGDVPK--DSLDDLFP---NEDEQSPAPSPGG 181
Query: 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE 259
+ GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 182 GDVAAQHGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG--------- 232
Query: 260 DCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDA 319
HDHPDVATMLNILALVYRDQNKYK+AA+LLNDA
Sbjct: 233 ---------------------------HDHPDVATMLNILALVYRDQNKYKDAAHLLNDA 265
Query: 320 LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379
L IREKTLG++H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK HPDVAKQ
Sbjct: 266 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 325
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
L+NLALLCQNQ K EEVE YY+RALEIY +LGPDD NVAKTKNNLASCYLKQGKY++AE
Sbjct: 326 LSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 385
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIW---QDRQKNKAKNREKYYQRALEIYELKLGPDDS 496
LYK++LTRAHE+EFG+ +G+NKPIW ++R+++K K R++ Y+ D
Sbjct: 386 TLYKEILTRAHEKEFGSVNGENKPIWMHAEEREESKDKRRDRRPMEYGSWYK-ACKVDSP 444
Query: 497 NVAKTKNNLASCYLKQGKYKEAEIL 521
V T L + Y +GK + A L
Sbjct: 445 TVNTTLRTLGALYRPEGKLEAAHTL 469
|
Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| 270005876 | 575 | hypothetical protein TcasGA2_TC007992 [T | 0.879 | 0.834 | 0.688 | 0.0 | |
| 345498074 | 547 | PREDICTED: kinesin light chain-like [Nas | 0.877 | 0.875 | 0.690 | 0.0 | |
| 189236349 | 571 | PREDICTED: similar to kinesin light chai | 0.871 | 0.833 | 0.681 | 0.0 | |
| 345498072 | 571 | PREDICTED: kinesin light chain-like [Nas | 0.858 | 0.821 | 0.689 | 0.0 | |
| 380012535 | 548 | PREDICTED: kinesin light chain-like [Api | 0.877 | 0.874 | 0.688 | 0.0 | |
| 328788076 | 547 | PREDICTED: kinesin light chain-like [Api | 0.877 | 0.875 | 0.688 | 0.0 | |
| 340718964 | 547 | PREDICTED: kinesin light chain-like isof | 0.877 | 0.875 | 0.686 | 0.0 | |
| 322802784 | 574 | hypothetical protein SINV_12960 [Solenop | 0.857 | 0.815 | 0.690 | 0.0 | |
| 328719480 | 539 | PREDICTED: kinesin light chain-like [Acy | 0.833 | 0.844 | 0.693 | 0.0 | |
| 332018305 | 568 | Kinesin light chain [Acromyrmex echinati | 0.844 | 0.811 | 0.688 | 0.0 |
| >gi|270005876|gb|EFA02324.1| hypothetical protein TcasGA2_TC007992 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/526 (68%), Positives = 408/526 (77%), Gaps = 46/526 (8%)
Query: 1 MTKTLNEYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGP 60
M+KT+N YR+KKIES+GKMT M+QEEI++ +TV QGLEAL++EH IL+ L E P
Sbjct: 1 MSKTINAYRIKKIESLGKMTAMSQEEIVSAVRTVAQGLEALRSEHAGILHGLHEAPD--P 58
Query: 61 VEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDE 120
V E+ +V+ S E+IELGL EAQV+ ALA HLQ +EAEKQKLRTQVRRL QENAWLRDE
Sbjct: 59 VANERAGLVQQSAEMIELGLGEAQVIMALANHLQLIEAEKQKLRTQVRRLCQENAWLRDE 118
Query: 121 LANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVD 180
LA+TQQ+LQ+SEQ +QLEEEK+HLEFMSS+ KYD D+ D S +S+K DPVVD
Sbjct: 119 LASTQQRLQASEQTVAQLEEEKRHLEFMSSVSKYDQDVNDDNTSEHSRSEK---PDPVVD 175
Query: 181 LFPDEDNDDRNNLSPTPPSQF--AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 238
LFPD+DN+DRNN+SPTPP+Q +QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC
Sbjct: 176 LFPDDDNEDRNNMSPTPPNQLQLSQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 235
Query: 239 KQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298
KQALEDLEKTSG HDHPDVATMLNI
Sbjct: 236 KQALEDLEKTSG------------------------------------HDHPDVATMLNI 259
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
LALVYRDQNKYKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLC
Sbjct: 260 LALVYRDQNKYKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLC 319
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
KRAL+IREKVLG++HPDVAKQLNNLALLCQNQ KYEEVE+YYQRALEIYE +LGPDD NV
Sbjct: 320 KRALDIREKVLGRDHPDVAKQLNNLALLCQNQGKYEEVEKYYQRALEIYEKRLGPDDPNV 379
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKN 475
+KT NNLASCYLKQGKYKEAE+LYKQ+L RAHEREFG DGDNKPIWQ +R++NKAKN
Sbjct: 380 SKTMNNLASCYLKQGKYKEAEVLYKQILNRAHEREFGTIDGDNKPIWQVAEEREENKAKN 439
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
RE + D V T NL + Y +QGKY+ AE L
Sbjct: 440 RENAPYGEYGGWHKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETL 485
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345498074|ref|XP_001600608.2| PREDICTED: kinesin light chain-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/526 (69%), Positives = 406/526 (77%), Gaps = 47/526 (8%)
Query: 1 MTKTLNEYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGP 60
M+KTLN YR+KKIE IG+MT M QEEI+ +TV QGLEAL+ EHT +LN L + P
Sbjct: 6 MSKTLNAYRIKKIEHIGRMTAMTQEEIVAGARTVAQGLEALRVEHTGLLNGLQSQE--AP 63
Query: 61 VEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDE 120
+K +++ ++++IELGL EAQVM ALA HLQ VEAEKQKLRTQVRRL QENAWLRDE
Sbjct: 64 AARDKASIISKNIDMIELGLGEAQVMLALASHLQMVEAEKQKLRTQVRRLCQENAWLRDE 123
Query: 121 LANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVD 180
LA TQQKLQ+SEQA +QLEEEK+HLEFM+S+R+YD D Q D D+ + +DDPVVD
Sbjct: 124 LAGTQQKLQASEQAVAQLEEEKRHLEFMASMRQYDPDPQPD----DENAKDRPKDDPVVD 179
Query: 181 LFPDEDNDDRNN--LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 238
LFPD++N+DRN+ +SPTPPSQFAQQV AGYEIPARLRTLHNLVIQYASQGRYEVAVPLC
Sbjct: 180 LFPDDENEDRNSKSMSPTPPSQFAQQVTAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 239
Query: 239 KQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298
KQALEDLEKTSG HDHPDVATMLNI
Sbjct: 240 KQALEDLEKTSG------------------------------------HDHPDVATMLNI 263
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
LALVYRDQNKYKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLC
Sbjct: 264 LALVYRDQNKYKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLC 323
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
KRALEIREKVLG++HPDVAKQLNNLALLCQNQ KYEEVE+YYQRALEIYE KLGPDD NV
Sbjct: 324 KRALEIREKVLGRDHPDVAKQLNNLALLCQNQGKYEEVEQYYQRALEIYEEKLGPDDPNV 383
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKN 475
AKTKNNLASCYLKQGKYK+AE+LYKQVLTRAHEREFGA DGDNKPIWQ +R++NK +
Sbjct: 384 AKTKNNLASCYLKQGKYKDAEVLYKQVLTRAHEREFGAIDGDNKPIWQVAEEREENKHRK 443
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
RE + D T NL + Y +QGKY+ AE L
Sbjct: 444 RENAPYGEYGGWHKAAKVDSPTFNTTLRNLGALYRRQGKYEAAETL 489
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189236349|ref|XP_966804.2| PREDICTED: similar to kinesin light chain 1 and [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/522 (68%), Positives = 402/522 (77%), Gaps = 46/522 (8%)
Query: 5 LNEYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEE 64
+++ KKIES+GKMT M+QEEI++ +TV QGLEAL++EH IL+ L E PV E
Sbjct: 1 MDDSNTKKIESLGKMTAMSQEEIVSAVRTVAQGLEALRSEHAGILHGLHEAPD--PVANE 58
Query: 65 KRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANT 124
+ +V+ S E+IELGL EAQV+ ALA HLQ +EAEKQKLRTQVRRL QENAWLRDELA+T
Sbjct: 59 RAGLVQQSAEMIELGLGEAQVIMALANHLQLIEAEKQKLRTQVRRLCQENAWLRDELAST 118
Query: 125 QQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPD 184
QQ+LQ+SEQ +QLEEEK+HLEFMSS+ KYD D+ D S +S+K DPVVDLFPD
Sbjct: 119 QQRLQASEQTVAQLEEEKRHLEFMSSVSKYDQDVNDDNTSEHSRSEK---PDPVVDLFPD 175
Query: 185 EDNDDRNNLSPTPPSQF--AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQAL 242
+DN+DRNN+SPTPP+Q +QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQAL
Sbjct: 176 DDNEDRNNMSPTPPNQLQLSQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQAL 235
Query: 243 EDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALV 302
EDLEKTSG HDHPDVATMLNILALV
Sbjct: 236 EDLEKTSG------------------------------------HDHPDVATMLNILALV 259
Query: 303 YRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362
YRDQNKYKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLCKRAL
Sbjct: 260 YRDQNKYKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 319
Query: 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422
+IREKVLG++HPDVAKQLNNLALLCQNQ KYEEVE+YYQRALEIYE +LGPDD NV+KT
Sbjct: 320 DIREKVLGRDHPDVAKQLNNLALLCQNQGKYEEVEKYYQRALEIYEKRLGPDDPNVSKTM 379
Query: 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKNREKY 479
NNLASCYLKQGKYKEAE+LYKQ+L RAHEREFG DGDNKPIWQ +R++NKAKNRE
Sbjct: 380 NNLASCYLKQGKYKEAEVLYKQILNRAHEREFGTIDGDNKPIWQVAEEREENKAKNRENA 439
Query: 480 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+ D V T NL + Y +QGKY+ AE L
Sbjct: 440 PYGEYGGWHKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETL 481
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345498072|ref|XP_003428139.1| PREDICTED: kinesin light chain-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/516 (68%), Positives = 397/516 (76%), Gaps = 47/516 (9%)
Query: 11 KKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVK 70
KKIE IG+MT M QEEI+ +TV QGLEAL+ EHT +LN L + P +K +++
Sbjct: 7 KKIEHIGRMTAMTQEEIVAGARTVAQGLEALRVEHTGLLNGLQSQE--APAARDKASIIS 64
Query: 71 NSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQS 130
++++IELGL EAQVM ALA HLQ VEAEKQKLRTQVRRL QENAWLRDELA TQQKLQ+
Sbjct: 65 KNIDMIELGLGEAQVMLALASHLQMVEAEKQKLRTQVRRLCQENAWLRDELAGTQQKLQA 124
Query: 131 SEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDR 190
SEQA +QLEEEK+HLEFM+S+R+YD D Q D D+ + +DDPVVDLFPD++N+DR
Sbjct: 125 SEQAVAQLEEEKRHLEFMASMRQYDPDPQPD----DENAKDRPKDDPVVDLFPDDENEDR 180
Query: 191 NN--LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 248
N+ +SPTPPSQFAQQV AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT
Sbjct: 181 NSKSMSPTPPSQFAQQVTAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 240
Query: 249 SGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNK 308
SG HDHPDVATMLNILALVYRDQNK
Sbjct: 241 SG------------------------------------HDHPDVATMLNILALVYRDQNK 264
Query: 309 YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368
YKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV
Sbjct: 265 YKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 324
Query: 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428
LG++HPDVAKQLNNLALLCQNQ KYEEVE+YYQRALEIYE KLGPDD NVAKTKNNLASC
Sbjct: 325 LGRDHPDVAKQLNNLALLCQNQGKYEEVEQYYQRALEIYEEKLGPDDPNVAKTKNNLASC 384
Query: 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRALE 485
YLKQGKYK+AE+LYKQVLTRAHEREFGA DGDNKPIWQ +R++NK + RE
Sbjct: 385 YLKQGKYKDAEVLYKQVLTRAHEREFGAIDGDNKPIWQVAEEREENKHRKRENAPYGEYG 444
Query: 486 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+ D T NL + Y +QGKY+ AE L
Sbjct: 445 GWHKAAKVDSPTFNTTLRNLGALYRRQGKYEAAETL 480
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380012535|ref|XP_003690335.1| PREDICTED: kinesin light chain-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/526 (68%), Positives = 404/526 (76%), Gaps = 47/526 (8%)
Query: 1 MTKTLNEYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGP 60
M+KTLN YR+KKIE+IG+MT M QEEIM + V QGLEAL+ EH +L +L +TQ P
Sbjct: 6 MSKTLNAYRIKKIENIGRMTAMTQEEIMAGARIVAQGLEALRVEHGGLLQAL-QTQDA-P 63
Query: 61 VEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDE 120
V +K +++ ++E+IELGL EAQVM ALA HLQ VEAEKQKLRTQVRRL QENAWLRDE
Sbjct: 64 VARDKASLLSKNIEMIELGLGEAQVMMALANHLQMVEAEKQKLRTQVRRLCQENAWLRDE 123
Query: 121 LANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVD 180
LA TQQKLQ+SEQA QLEE+KKHL+FM S+++YD D D D+ + DDPVVD
Sbjct: 124 LAGTQQKLQASEQALVQLEEQKKHLDFMESMKQYDPDPSAD----DENAKDRPPDDPVVD 179
Query: 181 LFPDEDNDDRNN--LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 238
LFPD+D DDRN+ +SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC
Sbjct: 180 LFPDDDADDRNSKSISPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 239
Query: 239 KQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298
KQALEDLEKTSG HDHPDVATMLNI
Sbjct: 240 KQALEDLEKTSG------------------------------------HDHPDVATMLNI 263
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
LALVYRDQNKYKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLC
Sbjct: 264 LALVYRDQNKYKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLC 323
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
KRAL+IREKVLG++HPDVAKQLNNLALLCQNQ KYEEVERYY RALEIYE KLGPDD NV
Sbjct: 324 KRALDIREKVLGRDHPDVAKQLNNLALLCQNQGKYEEVERYYLRALEIYEGKLGPDDPNV 383
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKN 475
AKTKNNLASCYLKQGKYK+AE+LYKQVLTRAHE+EFGA GDNKPIWQ +R++NK +N
Sbjct: 384 AKTKNNLASCYLKQGKYKDAEVLYKQVLTRAHEKEFGAIAGDNKPIWQVAEEREENKHRN 443
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+E + D V T NL + Y +QGKY+ AE L
Sbjct: 444 KENTPYGEYGGWHKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETL 489
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328788076|ref|XP_001122705.2| PREDICTED: kinesin light chain-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/526 (68%), Positives = 404/526 (76%), Gaps = 47/526 (8%)
Query: 1 MTKTLNEYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGP 60
M+KTLN YR+KKIE+IG+MT M QEEIM + V QGLEAL+ EH +L +L +TQ P
Sbjct: 6 MSKTLNAYRIKKIENIGRMTAMTQEEIMAGARIVAQGLEALRVEHGGLLQAL-QTQDA-P 63
Query: 61 VEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDE 120
V +K +++ ++E+IELGL EAQVM ALA HLQ VEAEKQKLRTQVRRL QENAWLRDE
Sbjct: 64 VARDKASLLSKNIEMIELGLGEAQVMMALANHLQMVEAEKQKLRTQVRRLCQENAWLRDE 123
Query: 121 LANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVD 180
LA TQQKLQ+SEQA QLEE+KKHL+FM S+++YD D D D+ + DDPVVD
Sbjct: 124 LAGTQQKLQASEQALVQLEEQKKHLDFMESMKQYDPDPSAD----DENAKDRPPDDPVVD 179
Query: 181 LFPDEDNDDRNN--LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 238
LFPD+D DDRN+ +SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC
Sbjct: 180 LFPDDDADDRNSKSISPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 239
Query: 239 KQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298
KQALEDLEKTSG HDHPDVATMLNI
Sbjct: 240 KQALEDLEKTSG------------------------------------HDHPDVATMLNI 263
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
LALVYRDQNKYKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLC
Sbjct: 264 LALVYRDQNKYKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLC 323
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
KRAL+IREKVLG++HPDVAKQLNNLALLCQNQ KYEEVERYY RALEIYE KLGPDD NV
Sbjct: 324 KRALDIREKVLGRDHPDVAKQLNNLALLCQNQGKYEEVERYYLRALEIYEGKLGPDDPNV 383
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKN 475
AKTKNNLASCYLKQGKYK+AE+LYKQVLTRAHE+EFGA GDNKPIWQ +R++NK +N
Sbjct: 384 AKTKNNLASCYLKQGKYKDAEVLYKQVLTRAHEKEFGAIAGDNKPIWQVAEEREENKHRN 443
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+E + D V T NL + Y +QGKY+ AE L
Sbjct: 444 KENTPYGEYGGWHKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETL 489
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340718964|ref|XP_003397929.1| PREDICTED: kinesin light chain-like isoform 2 [Bombus terrestris] gi|350396095|ref|XP_003484440.1| PREDICTED: kinesin light chain-like isoform 2 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/526 (68%), Positives = 403/526 (76%), Gaps = 47/526 (8%)
Query: 1 MTKTLNEYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGP 60
M+KTLN YR+KKIE+IG+MT M QEEIM + V QGLEAL+ EH +L +L +TQ P
Sbjct: 6 MSKTLNAYRIKKIENIGRMTAMTQEEIMAGARIVSQGLEALRVEHGGLLQAL-QTQDA-P 63
Query: 61 VEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDE 120
V +K +++ ++E+IELGL EAQVM ALA HLQ VEAEKQKLRTQVRRL QENAWLRDE
Sbjct: 64 VARDKASLLSKNIEMIELGLGEAQVMMALANHLQMVEAEKQKLRTQVRRLCQENAWLRDE 123
Query: 121 LANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVD 180
LA TQQKLQ+S+QA QLEE+KKHL+FM S+++YD D D D+ + DDPVVD
Sbjct: 124 LAGTQQKLQASQQALVQLEEQKKHLDFMESMKQYDPDPSAD----DENAKDRPPDDPVVD 179
Query: 181 LFPDEDNDDRNNLS--PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 238
LFPD+D DDRN+ S PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC
Sbjct: 180 LFPDDDADDRNSKSILPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLC 239
Query: 239 KQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298
KQALEDLEKTSG HDHPDVATMLNI
Sbjct: 240 KQALEDLEKTSG------------------------------------HDHPDVATMLNI 263
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
LALVYRDQNKYKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLC
Sbjct: 264 LALVYRDQNKYKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLC 323
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
KRAL+IREKVLG++HPDVAKQLNNLALLCQNQ KYEEVERYY RALEIYE KLGPDD NV
Sbjct: 324 KRALDIREKVLGRDHPDVAKQLNNLALLCQNQGKYEEVERYYLRALEIYEGKLGPDDPNV 383
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKN 475
AKTKNNLASCYLKQGKYK+AE+LYKQVLTRAHE+EFGA GDNKPIWQ +R++NK +N
Sbjct: 384 AKTKNNLASCYLKQGKYKDAEVLYKQVLTRAHEKEFGAIAGDNKPIWQVAEEREENKHRN 443
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+E + D V T NL + Y +QGKY+ AE L
Sbjct: 444 KENAPYGEYGGWHKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETL 489
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322802784|gb|EFZ22996.1| hypothetical protein SINV_12960 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/517 (69%), Positives = 397/517 (76%), Gaps = 49/517 (9%)
Query: 11 KKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVK 70
KKIE+IG+MT M QEEI+ +TV QGLEAL+ EH +L L P +K +++
Sbjct: 1 KKIENIGRMTAMTQEEIVAGARTVAQGLEALRVEHGGLLQGLQS--QDAPAARDKASLLS 58
Query: 71 NSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQS 130
+E+I+LGL EAQVM ALA HLQ VEAEKQKLRTQV+RL QENAWLRDELA TQQKLQ+
Sbjct: 59 KIIEMIDLGLGEAQVMQALASHLQMVEAEKQKLRTQVKRLCQENAWLRDELAGTQQKLQA 118
Query: 131 SEQANSQLEEEKKHLEFMSSIRKYDSDIQG-DENSGDQKSDKHKQDDPVVDLFPDEDNDD 189
SEQA +QLEEEK+HL+FM+S+R+YD D DEN+ D+ +DDPVVDLFPD+D DD
Sbjct: 119 SEQAVAQLEEEKRHLDFMASMRQYDPDPSTEDENAKDRP-----KDDPVVDLFPDDDADD 173
Query: 190 RNN--LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 247
RN+ +SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK
Sbjct: 174 RNSKSISPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 233
Query: 248 TSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQN 307
TSG HDHPDVATMLNILALVYRDQN
Sbjct: 234 TSG------------------------------------HDHPDVATMLNILALVYRDQN 257
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
KYKEAANLLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK
Sbjct: 258 KYKEAANLLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 317
Query: 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427
VLG++HPDVAKQLNNLALLCQNQ KYEEVERYYQRALEIYE KLGPDD NVAKTKNNLAS
Sbjct: 318 VLGRDHPDVAKQLNNLALLCQNQGKYEEVERYYQRALEIYEAKLGPDDPNVAKTKNNLAS 377
Query: 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRAL 484
CYLKQGKYK+AE+LYKQVLTRAHEREFGA DGDNKPIWQ +R++NK +N+E
Sbjct: 378 CYLKQGKYKDAEVLYKQVLTRAHEREFGAIDGDNKPIWQVAEEREENKHRNKENTPYGEY 437
Query: 485 EIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+ D V T NL + Y +QGKY+ AE L
Sbjct: 438 GGWHKAAKVDSPTVTTTLKNLGALYRRQGKYEAAETL 474
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328719480|ref|XP_001942586.2| PREDICTED: kinesin light chain-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/515 (69%), Positives = 393/515 (76%), Gaps = 60/515 (11%)
Query: 19 MTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIEL 78
MTVM+QEE+M KTV QGLEALKNE T+ N+ S P EEK++M++ +L++ EL
Sbjct: 1 MTVMSQEEMMVGIKTVAQGLEALKNELTAS-NNPSGQNTMQP--EEKQSMLQKTLDMTEL 57
Query: 79 GLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQL 138
GL EAQVM ALA HLQNVEAEKQKLRTQVRRL QENAWLRDELANTQQKLQ+SEQA + L
Sbjct: 58 GLGEAQVMLALASHLQNVEAEKQKLRTQVRRLCQENAWLRDELANTQQKLQASEQAVALL 117
Query: 139 EEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPP 198
+E+ KHLEFM+SI K+D+D D+ + K +K K DDPVVDLFPD++N++RN LSPTPP
Sbjct: 118 DEQNKHLEFMASISKFDADKTEDQT--ENKQEKSKNDDPVVDLFPDDENEERNTLSPTPP 175
Query: 199 SQFAQQVNAG--YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAE 256
SQFAQQVNAG YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 176 SQFAQQVNAGAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG------ 229
Query: 257 TLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLL 316
HDHPDVATMLNILALVYRDQNKYK+AANLL
Sbjct: 230 ------------------------------HDHPDVATMLNILALVYRDQNKYKDAANLL 259
Query: 317 NDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376
NDAL IREKTLGENH AVAATLNNLAVLYGKRGKYK+AEPLCKRALEIRE VLGK HPDV
Sbjct: 260 NDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALEIREAVLGKGHPDV 319
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
AKQLNNLALLCQNQ KYEEVERYYQRALEIYE KLGPDD NVAKTKNNLASCYLKQGKYK
Sbjct: 320 AKQLNNLALLCQNQGKYEEVERYYQRALEIYEKKLGPDDPNVAKTKNNLASCYLKQGKYK 379
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQ-----DRQKNKAKNREKY-----YQRALEI 486
EAEILYKQVLTRAHEREFG DGDNKPIWQ + KNK+ Y + +A ++
Sbjct: 380 EAEILYKQVLTRAHEREFGTIDGDNKPIWQVAEEREENKNKSTGAAPYTEYGGWHKAAKV 439
Query: 487 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
D V T NL + Y +QGKY+ AE L
Sbjct: 440 -------DSPTVTTTLKNLGALYRRQGKYEAAETL 467
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332018305|gb|EGI58910.1| Kinesin light chain [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/510 (68%), Positives = 391/510 (76%), Gaps = 49/510 (9%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIE 77
+MT M QEEI+ +TV QGLEAL+ EH +L L P +K +++ +E+I+
Sbjct: 1 RMTAMTQEEIVAGARTVAQGLEALRVEHGGLLQGLQS--QDAPAARDKASLLSKIIEMID 58
Query: 78 LGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQ 137
LGL EAQVM ALA HLQ VEAEKQKLRTQV+RL QENAWLRDELA TQQKLQ+SEQA +Q
Sbjct: 59 LGLGEAQVMQALASHLQMVEAEKQKLRTQVKRLCQENAWLRDELAGTQQKLQASEQAVAQ 118
Query: 138 LEEEKKHLEFMSSIRKYDSDIQG-DENSGDQKSDKHKQDDPVVDLFPDEDNDDRNN--LS 194
LEEEK+HL+FM+S+R+YD D DEN+ D+ +DDPVVDLFPD+D DDRN+ +S
Sbjct: 119 LEEEKRHLDFMASMRQYDPDPSTEDENAKDRP-----KDDPVVDLFPDDDTDDRNSKSIS 173
Query: 195 PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEA 254
PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 174 PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG---- 229
Query: 255 AETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAAN 314
HDHPDVATMLNILALVYRDQNKYKEAAN
Sbjct: 230 --------------------------------HDHPDVATMLNILALVYRDQNKYKEAAN 257
Query: 315 LLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374
LLNDAL IREKTLGENH AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG++HP
Sbjct: 258 LLNDALAIREKTLGENHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGRDHP 317
Query: 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434
DVAKQLNNLALLCQNQ KYEEVERYYQRALEIYE+KLGPDD NVAKTKNNLASCYLKQGK
Sbjct: 318 DVAKQLNNLALLCQNQGKYEEVERYYQRALEIYEVKLGPDDPNVAKTKNNLASCYLKQGK 377
Query: 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKL 491
YK+AE+LYKQVLTRAHEREFGA DGDNKPIWQ +R++NK +N+E +
Sbjct: 378 YKDAEVLYKQVLTRAHEREFGAIDGDNKPIWQVAEEREENKHRNKENTPYGEYGGWHKAA 437
Query: 492 GPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
D V T NL + Y +QGKY+ AE L
Sbjct: 438 KVDSPTVTTTLKNLGALYRRQGKYEAAETL 467
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| FB|FBgn0010235 | 508 | Klc "Kinesin light chain" [Dro | 0.705 | 0.757 | 0.540 | 1.3e-98 | |
| UNIPROTKB|A6H7H2 | 623 | KLC1 "Uncharacterized protein" | 0.721 | 0.632 | 0.506 | 1.7e-89 | |
| UNIPROTKB|E2RAF2 | 565 | LOC100855591 "Uncharacterized | 0.721 | 0.697 | 0.506 | 1.7e-89 | |
| UNIPROTKB|E2RAF0 | 634 | LOC100855591 "Uncharacterized | 0.721 | 0.621 | 0.506 | 1.7e-89 | |
| UNIPROTKB|G5E9S8 | 549 | KLC1 "Kinesin light chain 1" [ | 0.723 | 0.719 | 0.502 | 2.2e-89 | |
| UNIPROTKB|F1S9W8 | 571 | LOC100523621 "Uncharacterized | 0.727 | 0.695 | 0.501 | 3.6e-89 | |
| UNIPROTKB|F8W6L3 | 576 | KLC1 "Kinesin light chain 1" [ | 0.721 | 0.684 | 0.503 | 4.6e-89 | |
| RGD|621411 | 560 | Klc1 "kinesin light chain 1" [ | 0.721 | 0.703 | 0.503 | 4.6e-89 | |
| UNIPROTKB|P37285 | 560 | Klc1 "Kinesin light chain 1" [ | 0.721 | 0.703 | 0.503 | 4.6e-89 | |
| UNIPROTKB|E7EVH7 | 732 | KLC1 "Kinesin light chain 1" [ | 0.721 | 0.538 | 0.503 | 4.6e-89 |
| FB|FBgn0010235 Klc "Kinesin light chain" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 220/407 (54%), Positives = 274/407 (67%)
Query: 19 MTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIEL 78
MT M+Q+EI+TNTKTV QGLEAL+ EH SI+N ++E Q + EK +M++ ++E IEL
Sbjct: 1 MTQMSQDEIITNTKTVLQGLEALRVEHVSIMNGIAEVQK----DNEKSDMLRKNIENIEL 56
Query: 79 GLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQL 138
GL+EAQVM AL HLQN+EAEK KL+TQVRRL QENAWLRDELANTQQK Q+SEQ +QL
Sbjct: 57 GLSEAQVMMALTSHLQNIEAEKHKLKTQVRRLHQENAWLRDELANTQQKFQASEQLVAQL 116
Query: 139 EEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPP 198
EEEKKHLEFM+S++KYD + + D+ DK + D PVV+LFPDE+N+DR+N+SPTPP
Sbjct: 117 EEEKKHLEFMASVKKYDENQEQDD-----ACDKSRTD-PVVELFPDEENEDRHNMSPTPP 170
Query: 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKY--EAAE 256
SQFA Q + GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE+TSG + A
Sbjct: 171 SQFANQTS-GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVAT 229
Query: 257 TLEDCALRSR-----KESYDIVKQAKVAQILGSG-GHDHPDVATMLNILALVYRDQNKYK 310
L AL R KE+ +++ A I G G +HP VA LN LA++Y + KYK
Sbjct: 230 MLNILALVYRDQNKYKEAANLLNDA--LSIRGKTLGENHPAVAATLNNLAVLYGKRGKYK 287
Query: 311 EAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEIREKVLG 370
+A L AL IREK LG++H +GKY E E +RAL+I E LG
Sbjct: 288 DAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYDEVEKYYQRALDIYESKLG 347
Query: 371 KEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGPDDS 416
+ P+VAK +Y E E Y++ L +E + G DS
Sbjct: 348 PDDPNVAKTKNNLAGCYLKQGRYTEAEILYKQVLTRAHEREFGAIDS 394
|
|
| UNIPROTKB|A6H7H2 KLC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 210/415 (50%), Positives = 261/415 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++D+D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDADSTKE--PLDDLFPNDDDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 249
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYG 308
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 309 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 368
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
+ LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 369 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 423
|
|
| UNIPROTKB|E2RAF2 LOC100855591 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 210/415 (50%), Positives = 261/415 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 20 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 79
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 80 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 139
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++D+D
Sbjct: 140 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDDDDPGQ 194
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 195 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 254
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 255 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYG 313
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 314 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 373
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
+ LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 374 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 428
|
|
| UNIPROTKB|E2RAF0 LOC100855591 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 210/415 (50%), Positives = 261/415 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 11 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 70
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 71 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 130
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++D+D
Sbjct: 131 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDDDDPGQ 185
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 186 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 245
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 246 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYG 304
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 305 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 364
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
+ LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 365 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 419
|
|
| UNIPROTKB|G5E9S8 KLC1 "Kinesin light chain 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 207/412 (50%), Positives = 255/412 (61%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++++D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDEDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 249
Query: 252 Y--EAAETLEDCALRSRKESYDIVKQAKVAQILGSG--GHDHPDVATMLNILALVYRDQN 307
+ A L AL + + D A + G DHP VA LN LA++Y +
Sbjct: 250 DHPDVATMLNILALVDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 309
Query: 308 KYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEIREK 367
KYKEA L AL IREK LG++H +GKY+E E +RALEI +
Sbjct: 310 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 369
Query: 368 VLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 370 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 421
|
|
| UNIPROTKB|F1S9W8 LOC100523621 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 209/417 (50%), Positives = 262/417 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++D+D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDDDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 249
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYG 308
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 309 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 368
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGPDDSNVAK 420
+ LG + P+VAK K+++ E Y+ L +E + G D++ K
Sbjct: 369 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDADENK 425
|
|
| UNIPROTKB|F8W6L3 KLC1 "Kinesin light chain 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 209/415 (50%), Positives = 261/415 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++++D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDEDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 249
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYG 308
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 309 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 368
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
+ LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 369 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 423
|
|
| RGD|621411 Klc1 "kinesin light chain 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 209/415 (50%), Positives = 261/415 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK +M++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSSMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ SD K+ P+ DLFP++++D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDSDSSKE--PLDDLFPNDEDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 249
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGRDHPAVAATLNNLAVLYG 308
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 309 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 368
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
+ LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 369 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 423
|
|
| UNIPROTKB|P37285 Klc1 "Kinesin light chain 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 209/415 (50%), Positives = 261/415 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK +M++
Sbjct: 15 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSSMIRK 74
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 75 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 134
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ SD K+ P+ DLFP++++D
Sbjct: 135 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDSDSSKE--PLDDLFPNDEDDPGQ 189
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 190 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 249
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGRDHPAVAATLNNLAVLYG 308
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 309 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 368
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
+ LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 369 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 423
|
|
| UNIPROTKB|E7EVH7 KLC1 "Kinesin light chain 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 209/415 (50%), Positives = 261/415 (62%)
Query: 18 KMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSET------QHGGPVEEEKRNMVKN 71
K+ + Q+EI++ TK V QGLEALKNEH SIL SL ET + EEK NM++
Sbjct: 187 KLEKLTQDEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKKDDESNLVEEKSNMIRK 246
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131
SLE++ELGL+EAQVM AL+ HL VE+EKQKLR QVRRL QEN WLRDELANTQQKLQ S
Sbjct: 247 SLEMLELGLSEAQVMMALSNHLNAVESEKQKLRAQVRRLCQENQWLRDELANTQQKLQKS 306
Query: 132 EQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRN 191
EQ+ +QLEEEKKHLEFM+ ++KYD DI E D+ +D K+ P+ DLFP++++D
Sbjct: 307 EQSVAQLEEEKKHLEFMNQLKKYDDDISPSE---DKDTDSTKE--PLDDLFPNDEDDPGQ 361
Query: 192 NLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251
+ S A GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 362 GIQQQHSSAAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH 421
Query: 252 Y--EAAETLEDCALRSR-----KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304
+ A L AL R K++ +++ A +A + G DHP VA LN LA++Y
Sbjct: 422 DHPDVATMLNILALVYRDQNKYKDAANLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYG 480
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEI 364
+ KYKEA L AL IREK LG++H +GKY+E E +RALEI
Sbjct: 481 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 540
Query: 365 REKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL-EIYELKLGP-DDSN 417
+ LG + P+VAK K+++ E Y+ L +E + G DD N
Sbjct: 541 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 595
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5R581 | KLC1_PONAB | No assigned EC number | 0.6311 | 0.8369 | 0.8160 | yes | N/A |
| P37285 | KLC1_RAT | No assigned EC number | 0.6331 | 0.8369 | 0.8160 | yes | N/A |
| P46824 | KLC_DROME | No assigned EC number | 0.6679 | 0.8351 | 0.8976 | yes | N/A |
| P46822 | KLC_CAEEL | No assigned EC number | 0.5681 | 0.8424 | 0.8518 | yes | N/A |
| Q05090 | KLC_STRPU | No assigned EC number | 0.6049 | 0.8443 | 0.6720 | yes | N/A |
| O88447 | KLC1_MOUSE | No assigned EC number | 0.6181 | 0.8333 | 0.8410 | no | N/A |
| P46825 | KLC_DORPE | No assigned EC number | 0.6385 | 0.8754 | 0.8371 | N/A | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 546 | |||
| pfam09311 | 180 | pfam09311, Rab5-bind, Rabaptin-like protein | 8e-51 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-17 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-16 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-13 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 2e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-11 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-09 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 6e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-07 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 1e-06 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-05 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 2e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-04 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 2e-04 | |
| pfam13374 | 42 | pfam13374, TPR_10, Tetratricopeptide repeat | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| pfam13176 | 36 | pfam13176, TPR_7, Tetratricopeptide repeat | 0.003 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.003 |
| >gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 8e-51
Identities = 91/177 (51%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Query: 77 ELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136
EL L+ +QV A+ LQ +EA +QKLR Q+RRL QEN WLR ELA TQQ+LQ+SEQ
Sbjct: 1 ELQLSFSQVQEAVQDQLQELEASRQKLRAQLRRLQQENQWLRGELALTQQELQASEQEVI 60
Query: 137 QLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLS-P 195
QL EE KHL+F+ R+ + + ++ K + DP+ +L P+ + + + P
Sbjct: 61 QLPEEVKHLQFLCLQRREELIESRTASEHLEEELKSEI-DPLKELKPNLEEELAAEIELP 119
Query: 196 TPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKY 252
S+ Q + YEIPARLRTLHNLVIQY SQGRYEVAVPLCK ALEDLEK SG
Sbjct: 120 QIQSEKDQLQASLYEIPARLRTLHNLVIQYESQGRYEVAVPLCKAALEDLEKESGHK 176
|
Members of this family are predominantly found in Rabaptin and allow for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes. Length = 180 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 3e-17
Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
HPD+A LN LALV R Y EA LL AL + + LGE+H A LNNLA LY
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLAL 59
Query: 349 GKYKEAEPLCKRALEIREK 367
G Y EA ++AL +RE
Sbjct: 60 GDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-16
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
H +AA LNNLA++ + G Y EA L ++ALE+ LG++HP+ A+ LNNLA L
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLAL 59
Query: 391 SKYEEVERYYQRALEIYE 408
Y+E Y ++AL + E
Sbjct: 60 GDYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-13
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
HPD+A LNNLAL+ + Y+E ++ALE+ +LG D A+ NNLA YL
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLAL 59
Query: 433 GKYKEAEILYKQVLTRAHE 451
G Y EA ++ L
Sbjct: 60 GDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-12
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375
AA+LNNLA +G+Y+EAE L + AL IR +VLG +HPD
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDHPD 42
|
Length = 42 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 36/110 (32%), Positives = 45/110 (40%), Gaps = 16/110 (14%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L +Y Y EA AL + A NLA Y K GKY+EA
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDN--------ADAYYNLAAAYYKLGKYEEALEDY 57
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
++ALE+ PD AK NL L KYEE Y++ALE+
Sbjct: 58 EKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-09
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 39/117 (33%)
Query: 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAK 474
++A NNLA + G Y EA
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEAL----------------------------------- 25
Query: 475 NREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
+ ++ALE+ +LG D A+ NNLA YL G Y EA ++ L
Sbjct: 26 ---ELLEKALELAR-ELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-08
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
A LN LA R Q +Y+EA LL +AL IR + LG +H
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPDH 40
|
Length = 42 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-07
Identities = 29/114 (25%), Positives = 39/114 (34%), Gaps = 37/114 (32%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
P L+NL + G Y+ A+ L ++ALE +
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELAREL----------------------- 38
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
G DHP+ A LN LA +Y Y EA L AL +RE
Sbjct: 39 --------------GEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 7e-07
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 54/149 (36%)
Query: 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
+ L NL L Y+E YY++ALE+ D + A NLA+ Y K GKY+E
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEE 52
Query: 438 AEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN 497
A + Y++ALE+ D +
Sbjct: 53 AL--------------------------------------EDYEKALEL--------DPD 66
Query: 498 VAKTKNNLASCYLKQGKYKEAEILYKQVL 526
AK NL Y K GKY+EA Y++ L
Sbjct: 67 NAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 42/149 (28%), Positives = 58/149 (38%), Gaps = 24/149 (16%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
LAL Y Q Y +A L AL + A Y K G+ A+
Sbjct: 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLV--------RAHYYQKLGENDLADESY 92
Query: 359 KRALEIREKVLGKEHPDVAKQLNNL-ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417
++AL P+ LNN A LC Q + EE + ++RAL P
Sbjct: 93 RKAL--------SLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALA------DPAYGE 137
Query: 418 VAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ T NL C LK G++ +AE K+ L
Sbjct: 138 PSDTLENLGLCALKAGQFDQAEEYLKRAL 166
|
Length = 250 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 28/202 (13%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388
+ A LA+ Y ++G + A+ +ALE PD LAL Q
Sbjct: 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQ 76
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ-VLT 447
+ E+ E ++RAL L P++ +V NN + +QGKY++A ++Q +
Sbjct: 77 QLGELEKAEDSFRRAL-----TLNPNNGDV---LNNYGTFLCQQGKYEQAMQQFEQAIED 128
Query: 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLAS 507
+ + + + N + + + K EKY RAL+I D ++ LA
Sbjct: 129 PLYPQPARSLE--NAGLCALKAGDFDK-AEKYLTRALQI--------DPQRPESLLELAE 177
Query: 508 CYLKQGKYKEAEILYKQVLTRA 529
Y +G+YK+A ++
Sbjct: 178 LYYLRGQYKDARAYLERYQQTY 199
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL-LCQNQSKY 393
A L NL K G Y EA ++ALE+ PD A+ NLAL + Y
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALEL--------DPDNAEAYYNLALAYLKLGKDY 54
Query: 394 EEVERYYQRALEI 406
EE ++ALE+
Sbjct: 55 EEALEDLEKALEL 67
|
Length = 69 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414
A LNNLA + Q +YEE E + AL I LGPD
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39
|
Length = 42 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-05
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434
D A+ L NL Y+E Y++ALE+ D + A+ NLA YLK GK
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALEL--------DPDNAEAYYNLALAYLKLGK 52
Query: 435 -YKEAEILYKQVL 446
Y+EA ++ L
Sbjct: 53 DYEEALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 50/223 (22%), Positives = 82/223 (36%), Gaps = 36/223 (16%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284
Y Q Y A+ ++AL+ +S A L L S A+ + L +
Sbjct: 713 YLRQKDYPAAIQAYRKALK-RAPSSQ---NAIKLHRALLASGN-------TAEAVKTLEA 761
Query: 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344
HP+ A + LA +Y Q Y +A + A LNNLA L
Sbjct: 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN--------AVVLNNLAWL 813
Query: 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL 404
Y + K A +RAL++ P++ L+ L L + + + ++A+
Sbjct: 814 YLEL-KDPRALEYAERALKLA--------PNIPAILDTLGWLLVEKGEADRALPLLRKAV 864
Query: 405 EIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
I P+ A + +LA L G+ EA ++L
Sbjct: 865 NI-----APEA---AAIRYHLALALLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD A LA Y KY+EA AL + A NL + Y K G
Sbjct: 31 PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--------NAKAYYNLGLAYYKLG 82
Query: 350 KYKEAEPLCKRALEIREK 367
KY+EA ++ALE+
Sbjct: 83 KYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD LAL Y+ + ++A + ALT+ LNN ++G
Sbjct: 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN--------GDVLNNYGTFLCQQG 113
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
KY++A ++A+E +P A+ L N L +++ E+Y RAL+I
Sbjct: 114 KYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--- 164
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
D ++ LA Y +G+YK+A ++
Sbjct: 165 -----DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY 199
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456
A + NNLA QG+Y+EAE L ++ L R G
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAI-RRRVLGP 38
|
Length = 42 |
| >gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 498 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 536
A + NNLA QG+Y+EAE L ++ L R G
Sbjct: 1 TAASLNNLARALRAQGRYEEAEELLEEALAI-RRRVLGP 38
|
Length = 42 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 56/239 (23%), Positives = 81/239 (33%), Gaps = 10/239 (4%)
Query: 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL--AVLYGKRGKYK 352
+L LA++ K A L +A + LGE A+ L G
Sbjct: 4 LLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLL 63
Query: 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412
+ + E + E + L NLA N E Y+ ALE+ E L
Sbjct: 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123
Query: 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK 472
D + G Y+EA LY++ L E A
Sbjct: 124 LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELA--------EALLALGA 175
Query: 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
Y+ ALE+ E L + + A+ NL YLK GKY+EA Y++ L +
Sbjct: 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK 350
D A L L Y EA AL + A NLA+ Y K GK
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDN--------AEAYYNLALAYLKLGK 52
Query: 351 -YKEAEPLCKRALEIRE 366
Y+EA ++ALE+
Sbjct: 53 DYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 7e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
A L NL Y K GKY EA ++ALE+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (91), Expect = 0.002
Identities = 57/274 (20%), Positives = 94/274 (34%), Gaps = 16/274 (5%)
Query: 253 EAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEA 312
A L + + E+ +++ L + ++ L
Sbjct: 6 LALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLL 65
Query: 313 ANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372
A L + E A L NLA G EA + ALE+ EK L +
Sbjct: 66 ALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD 125
Query: 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
+ YEE Y++ALE+ P+ + +A+ L +
Sbjct: 126 PDPDLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEAL 180
Query: 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492
G+Y+EA L ++ L + + A + Y+ ALE YE K
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEA----------LLNLGLLYLKLGKYEEALEYYE-KAL 229
Query: 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
D + A+ NLA L+ G+Y+EA ++ L
Sbjct: 230 ELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263
|
Length = 291 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.002
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYY 400
LA + G Y EA + AL +P A+ L L Q + E
Sbjct: 3 LARAALRAGDYDEALAALEAAL--------ARYPLAAEALLLLGEALLRQGRLAEAAALL 54
Query: 401 QRALEIY 407
+ AL
Sbjct: 55 RAALAAD 61
|
Length = 65 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
AK L NL KY+E YY++ALE+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNP 32
|
Length = 34 |
| >gnl|CDD|221958 pfam13176, TPR_7, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.003
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372
L+NL LY K G Y++A L +RAL + + +E
Sbjct: 1 ALSNLGRLYRKLGDYEKAISLYERALALAKDPEDRE 36
|
Length = 36 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
A L NL Y K G Y EA ++ALE+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| KOG1840|consensus | 508 | 100.0 | ||
| KOG4626|consensus | 966 | 99.96 | ||
| KOG4626|consensus | 966 | 99.95 | ||
| KOG1840|consensus | 508 | 99.93 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PF09311 | 181 | Rab5-bind: Rabaptin-like protein; InterPro: IPR015 | 99.88 | |
| KOG1126|consensus | 638 | 99.87 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| KOG1130|consensus | 639 | 99.8 | ||
| KOG1155|consensus | 559 | 99.79 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.78 | |
| KOG0547|consensus | 606 | 99.77 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.77 | |
| KOG1126|consensus | 638 | 99.77 | ||
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.76 | |
| KOG1173|consensus | 611 | 99.76 | ||
| KOG1130|consensus | 639 | 99.75 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.72 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.69 | |
| KOG1129|consensus | 478 | 99.69 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG2002|consensus | 1018 | 99.68 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| KOG1173|consensus | 611 | 99.67 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.67 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.63 | |
| KOG2002|consensus | 1018 | 99.62 | ||
| KOG1155|consensus | 559 | 99.61 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.61 | |
| KOG0547|consensus | 606 | 99.61 | ||
| KOG2003|consensus | 840 | 99.61 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.6 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.59 | |
| KOG1125|consensus | 579 | 99.59 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.53 | |
| KOG0624|consensus | 504 | 99.53 | ||
| KOG1174|consensus | 564 | 99.51 | ||
| KOG1125|consensus | 579 | 99.5 | ||
| KOG1129|consensus | 478 | 99.48 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.47 | |
| KOG1941|consensus | 518 | 99.47 | ||
| KOG4162|consensus | 799 | 99.45 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.45 | |
| KOG0495|consensus | 913 | 99.44 | ||
| KOG2003|consensus | 840 | 99.43 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.42 | |
| KOG2076|consensus | 895 | 99.42 | ||
| KOG0624|consensus | 504 | 99.42 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.4 | |
| KOG1941|consensus | 518 | 99.4 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.39 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.38 | |
| KOG0550|consensus | 486 | 99.38 | ||
| KOG0548|consensus | 539 | 99.37 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.35 | |
| KOG2076|consensus | 895 | 99.35 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.35 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.3 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.29 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.29 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.26 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.24 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.24 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.24 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.23 | |
| KOG0548|consensus | 539 | 99.22 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.21 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.2 | |
| KOG0550|consensus | 486 | 99.2 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.19 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.19 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.16 | |
| KOG1174|consensus | 564 | 99.13 | ||
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.13 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.11 | |
| KOG1156|consensus | 700 | 99.11 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.11 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.11 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.1 | |
| KOG0553|consensus | 304 | 99.09 | ||
| KOG0495|consensus | 913 | 99.08 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.08 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.08 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.08 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.06 | |
| KOG1156|consensus | 700 | 99.05 | ||
| KOG2376|consensus | 652 | 99.04 | ||
| KOG1127|consensus | 1238 | 99.04 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.03 | |
| KOG0553|consensus | 304 | 99.03 | ||
| KOG3060|consensus | 289 | 99.02 | ||
| KOG1128|consensus | 777 | 99.01 | ||
| KOG3060|consensus | 289 | 99.0 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 98.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.98 | |
| KOG4162|consensus | 799 | 98.98 | ||
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.94 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.93 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.92 | |
| KOG1127|consensus | 1238 | 98.91 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.91 | |
| KOG2376|consensus | 652 | 98.89 | ||
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.88 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.88 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.88 | |
| KOG4340|consensus | 459 | 98.87 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.84 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.79 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.79 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.77 | |
| KOG3785|consensus | 557 | 98.75 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.75 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.75 | |
| KOG1585|consensus | 308 | 98.74 | ||
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.73 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.73 | |
| KOG2047|consensus | 835 | 98.73 | ||
| KOG1839|consensus | 1236 | 98.71 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.71 | |
| KOG1586|consensus | 288 | 98.7 | ||
| KOG0543|consensus | 397 | 98.69 | ||
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.68 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.68 | |
| KOG1915|consensus | 677 | 98.67 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.65 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.65 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.65 | |
| KOG1128|consensus | 777 | 98.65 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.63 | |
| KOG1915|consensus | 677 | 98.59 | ||
| KOG4340|consensus | 459 | 98.57 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.55 | |
| KOG0543|consensus | 397 | 98.54 | ||
| KOG1839|consensus | 1236 | 98.53 | ||
| KOG3785|consensus | 557 | 98.52 | ||
| KOG2047|consensus | 835 | 98.51 | ||
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.47 | |
| KOG1070|consensus | 1710 | 98.46 | ||
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.46 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.44 | |
| KOG1585|consensus | 308 | 98.43 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.41 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.38 | |
| KOG4555|consensus | 175 | 98.38 | ||
| KOG1586|consensus | 288 | 98.37 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.36 | |
| KOG4555|consensus | 175 | 98.36 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.34 | |
| KOG2300|consensus | 629 | 98.31 | ||
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.26 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.25 | |
| KOG2796|consensus | 366 | 98.23 | ||
| KOG4234|consensus | 271 | 98.22 | ||
| KOG3617|consensus | 1416 | 98.21 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.21 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.2 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.2 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 98.14 | |
| KOG3617|consensus | 1416 | 98.07 | ||
| KOG4234|consensus | 271 | 98.07 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.07 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.05 | |
| KOG2300|consensus | 629 | 98.05 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.99 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.99 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.98 | |
| KOG3081|consensus | 299 | 97.97 | ||
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.97 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.95 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.94 | |
| KOG2796|consensus | 366 | 97.9 | ||
| KOG2471|consensus | 696 | 97.88 | ||
| KOG4648|consensus | 536 | 97.83 | ||
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.79 | |
| KOG4648|consensus | 536 | 97.79 | ||
| KOG2610|consensus | 491 | 97.77 | ||
| KOG4642|consensus | 284 | 97.76 | ||
| KOG3081|consensus | 299 | 97.74 | ||
| KOG2610|consensus | 491 | 97.73 | ||
| KOG3616|consensus | 1636 | 97.71 | ||
| KOG4642|consensus | 284 | 97.69 | ||
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.67 | |
| KOG1070|consensus | 1710 | 97.66 | ||
| KOG1464|consensus | 440 | 97.65 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 97.63 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.62 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.43 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.43 | |
| KOG2471|consensus | 696 | 97.43 | ||
| KOG1464|consensus | 440 | 97.39 | ||
| KOG1463|consensus | 411 | 97.38 | ||
| KOG3616|consensus | 1636 | 97.36 | ||
| KOG0545|consensus | 329 | 97.36 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.35 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.34 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.3 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.23 | |
| KOG0545|consensus | 329 | 97.23 | ||
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 97.22 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.21 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.19 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.19 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.18 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.12 | |
| KOG0551|consensus | 390 | 97.11 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.09 | |
| KOG0551|consensus | 390 | 97.05 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.04 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.02 | |
| KOG2053|consensus | 932 | 97.0 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 96.99 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 96.96 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.95 | |
| KOG2053|consensus | 932 | 96.91 | ||
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.87 | |
| KOG1463|consensus | 411 | 96.86 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.82 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.74 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.66 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 96.55 | |
| KOG1550|consensus | 552 | 96.52 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.47 | |
| KOG0985|consensus | 1666 | 96.43 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.27 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.23 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.23 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.21 | |
| KOG4322|consensus | 482 | 96.18 | ||
| KOG2041|consensus | 1189 | 96.13 | ||
| KOG3783|consensus | 546 | 96.09 | ||
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 95.9 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 95.86 | |
| KOG4814|consensus | 872 | 95.81 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.74 | |
| KOG0376|consensus | 476 | 95.73 | ||
| KOG0376|consensus | 476 | 95.71 | ||
| KOG4814|consensus | 872 | 95.54 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.51 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.48 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.19 | |
| KOG2041|consensus | 1189 | 95.16 | ||
| KOG1258|consensus | 577 | 95.15 | ||
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 95.13 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.05 | |
| KOG1550|consensus | 552 | 94.91 | ||
| KOG1308|consensus | 377 | 94.89 | ||
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.77 | |
| KOG1308|consensus | 377 | 94.75 | ||
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 94.71 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 94.63 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.61 | |
| KOG1538|consensus | 1081 | 94.6 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.58 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 94.52 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.47 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.38 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.33 | |
| KOG4322|consensus | 482 | 94.31 | ||
| KOG0687|consensus | 393 | 93.87 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.73 | |
| KOG1914|consensus | 656 | 93.71 | ||
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.59 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.45 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 93.42 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 93.38 | |
| KOG0686|consensus | 466 | 93.23 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 93.15 | |
| KOG1538|consensus | 1081 | 93.11 | ||
| KOG4507|consensus | 886 | 93.06 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.88 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 92.85 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.77 | |
| KOG2581|consensus | 493 | 92.68 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.67 | |
| KOG1258|consensus | 577 | 92.52 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.24 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.2 | |
| KOG3783|consensus | 546 | 92.2 | ||
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 92.02 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.93 | |
| KOG0687|consensus | 393 | 91.71 | ||
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 91.69 | |
| KOG0985|consensus | 1666 | 91.53 | ||
| KOG4507|consensus | 886 | 91.36 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 90.95 | |
| KOG0686|consensus | 466 | 90.58 | ||
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 90.58 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.55 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 90.35 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 90.09 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.83 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.73 | |
| KOG2422|consensus | 665 | 89.18 | ||
| KOG3824|consensus | 472 | 89.15 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 89.14 | |
| PF06156 | 107 | DUF972: Protein of unknown function (DUF972); Inte | 88.79 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 88.66 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 88.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 88.44 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 88.15 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.94 | |
| KOG4521|consensus | 1480 | 87.28 | ||
| KOG1497|consensus | 399 | 87.13 | ||
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 87.05 | |
| KOG1914|consensus | 656 | 86.68 | ||
| KOG2114|consensus | 933 | 86.37 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.3 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 86.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.19 | |
| KOG2561|consensus | 568 | 86.14 | ||
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 85.97 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.06 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 84.83 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 84.76 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 84.66 | |
| KOG0890|consensus | 2382 | 84.43 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 84.4 | |
| KOG3364|consensus | 149 | 84.39 | ||
| KOG2561|consensus | 568 | 84.13 | ||
| KOG1310|consensus | 758 | 83.61 | ||
| KOG4014|consensus | 248 | 83.29 | ||
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 82.93 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.89 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.8 | |
| KOG3364|consensus | 149 | 82.64 | ||
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.55 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.49 | |
| PRK13169 | 110 | DNA replication intiation control protein YabA; Re | 82.22 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 82.13 | |
| KOG3824|consensus | 472 | 82.1 | ||
| PF10205 | 102 | KLRAQ: Predicted coiled-coil domain-containing pro | 80.61 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.59 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 80.57 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 80.52 |
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=382.98 Aligned_cols=472 Identities=46% Similarity=0.590 Sum_probs=420.2
Q ss_pred cCChhHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccC-------CCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhh
Q psy597 21 VMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHG-------GPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHL 93 (546)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (546)
.+++++|.++|++|.+||++|+.||.+++..+..+..+ .+++.++......++..+..|.++++|+.+.+.|+
T Consensus 2 ~~~~~~i~~~~~~v~~~l~~l~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (508)
T KOG1840|consen 2 RLSQDSISSGTESVDLGLEALRSEHQELLVPLESTVKCFARSLLERSLPSEKSQLLRKSLLKLSLGSDEASVSGAAARHL 81 (508)
T ss_pred CCcccccccccHHHHHHHHHHHhhhHhHhhHHHHHHhhhhcccccccccchHhhhhHHHhhhhcCCCchHHHHHHHHHHh
Confidence 47899999999999999999999999999998887554 46767799999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhhhcCCCCCcCCCCCCCCCCC
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMS--SIRKYDSDIQGDENSGDQKSDK 171 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~--~l~~~~~~~~~~~~~~~~~~~~ 171 (546)
+..++..+.+++|+|++++++.|++++|+.+++.+..++.++.+++++..|+.++. .+..|+++....... ..
T Consensus 82 ~s~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~-----~~ 156 (508)
T KOG1840|consen 82 QSSEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQLEEEKLHLLAAIQALLLQLDEAEQGQEQA-----AV 156 (508)
T ss_pred cccchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccccc-----cc
Confidence 99999999999999999999999999999999999999999999999899999998 677788765554433 12
Q ss_pred CCCCccccccCCCCCCcCCCCCCCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc
Q psy597 172 HKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251 (546)
Q Consensus 172 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 251 (546)
....|.+.++++...+.+ .................+..+|....+...+|..|..+|+|++|+..|++++++..+..
T Consensus 157 ~~~~d~la~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~-- 233 (508)
T KOG1840|consen 157 TPVKDSLADLGGEKQEED-SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS-- 233 (508)
T ss_pred cchhHHHHhhcccccccc-ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc--
Confidence 222566777766554443 22223334445556677889999999999999999999999999999999999988777
Q ss_pred hhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331 (546)
Q Consensus 252 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 331 (546)
+..++.....+..+|.+|..+++|.+|+.+|++|+.+.+..+|+++
T Consensus 234 ----------------------------------G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 234 ----------------------------------GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred ----------------------------------CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
|.++.++.+||.+|...|+|++|..+|++|+++.++..+.+++.....+.+++.++..++++++|+.+++++++++...+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc----CCChhhHHHHhhchhhHHHHHHHHHHHHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD----GDNKPIWQDRQKNKAKNREKYYQRALEIY 487 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 487 (546)
+++++..+..+.+||.+|..+|+|++|.++|++++.+.++....... +.+.++..+.+.+.+..|...|.++..+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998775543333 33444455788889999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccC
Q psy597 488 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 535 (546)
Q Consensus 488 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 535 (546)
+.+++++|+...++.+||.+|..+|++++|.++.++++.......-.
T Consensus 440 -~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~ 486 (508)
T KOG1840|consen 440 -KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT 486 (508)
T ss_pred -HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999877554433
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-28 Score=236.51 Aligned_cols=291 Identities=25% Similarity=0.246 Sum_probs=230.7
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
++..-..++....|..+.+|.++|.++..+|+...|+..|++|+++-+... .|...+...+........+...+..
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~----dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL----DAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch----HHHhhHHHHHHHHhcchHHHHHHHH
Confidence 344444445555566666666666666666666666666666665433221 1111111111111111111111111
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
+ ....|..+.++.++|.+|+.+|..+-|+..|++++++ .|....++++||..+...|+..+|+.+|
T Consensus 278 A------l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 278 A------LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred H------HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 1 1146888899999999999999999999999999988 6778999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
.+++.+. |..+.+++|||.+|..+|.+++|..+|.++++. .|..+.+.+|||.+|..+|++++|
T Consensus 344 nkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 344 NKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHH
Confidence 9999996 888999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
+.+|++++.+.|.. .....+++..+...|+...|+.+|.+|+.+ .|..++++.+||.+|...|+..+|
T Consensus 408 i~~YkealrI~P~f----Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 408 IMCYKEALRIKPTF----ADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHHHHHHHhcCchH----HHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHH
Confidence 99999999986643 255677888899999999999999999988 899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccC
Q psy597 519 EILYKQVLTRAHEREFG 535 (546)
Q Consensus 519 ~~~~~~al~~~~~~~~~ 535 (546)
+..|+.|+++.|+.+-.
T Consensus 476 I~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHHHHccCCCCchh
Confidence 99999999998875543
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=229.34 Aligned_cols=342 Identities=21% Similarity=0.214 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCCh
Q psy597 119 DELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPP 198 (546)
Q Consensus 119 ~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 198 (546)
.+.+++..+++.....-+++++++..+..+-.++.-..+.+..... .+... ....
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~---------------al~~~----------~~~~ 167 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAA---------------ALVTQ----------GDLE 167 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHH---------------HHHhc----------CCCc
Confidence 4566778888888888888888887776666655322221111110 01111 1112
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.++.....+..-+|...-+...+|..+...|+..+|...|.+|++..+.. ..+..-+...+....+.-.+...+
T Consensus 168 ~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f----AiawsnLg~~f~~~Gei~~aiq~y-- 241 (966)
T KOG4626|consen 168 LAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF----AIAWSNLGCVFNAQGEIWLAIQHY-- 241 (966)
T ss_pred ccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce----eeeehhcchHHhhcchHHHHHHHH--
Confidence 23333444555667788888888888888899999988888888864421 111111222222222222222222
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.+...-+|....+|++||.+|...+.|+.|+..|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..|
T Consensus 242 ----~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 242 ----EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred ----HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHH
Confidence 2224567999999999999999999999999999999988 5777999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
+++++. .|....+++|+|..+...|+..+|+.+|.+|+.+ .|..+.+.+|||.+|..+|++++|
T Consensus 310 kral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 310 KRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred HHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHH
Confidence 999999 4999999999999999999999999999999999 889999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
..+|.+++...+... .+.++++..+..+|++++|+.+|++|+.+ .|..+.++.++|..|-.+|+...|
T Consensus 374 ~~ly~~al~v~p~~a----aa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFA----AAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHHHHHhhChhhh----hhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999876532 45678888899999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy597 519 EILYKQVLTRAHE 531 (546)
Q Consensus 519 ~~~~~~al~~~~~ 531 (546)
+.+|.+|+.+.|.
T Consensus 442 ~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 442 IQCYTRAIQINPT 454 (966)
T ss_pred HHHHHHHHhcCcH
Confidence 9999999998764
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=202.49 Aligned_cols=392 Identities=28% Similarity=0.337 Sum_probs=300.9
Q ss_pred hhHHHHHHHHhHhhhHHHHHhhhhhccC-CCchHHHHHH------HHhhHHHHHcCcCHHHH------HHHHHhhhhhHH
Q psy597 31 TKTVQQGLEALKNEHTSILNSLSETQHG-GPVEEEKRNM------VKNSLEIIELGLNEAQV------MTALAGHLQNVE 97 (546)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 97 (546)
.+...+-.+.++.|-..-.+.+...-.. ..+.++|..+ +...++....+...+.+ |..++...+...
T Consensus 95 ~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~~~~~~ 174 (508)
T KOG1840|consen 95 VRRLCQEGEWLEDELALTQRALKQSERSVAQLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGEKQEED 174 (508)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhcccccccc
Confidence 3444444455555555555555444322 2222223333 33335555555544443 555555555544
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCcc
Q psy597 98 AEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDP 177 (546)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (546)
.+............+++.-=-...-.+...|...+...++++++..-.+....+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-------------------------- 228 (508)
T KOG1840|consen 175 SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI-------------------------- 228 (508)
T ss_pred ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------------------
Confidence 444444444333333333333566666777888888888888886532211111
Q ss_pred ccccCCCCCCcCCCCCCCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh
Q psy597 178 VVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET 257 (546)
Q Consensus 178 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 257 (546)
+.+ ..+..+|.....+..+|..|...++|.+|+.+|++|+.+.....
T Consensus 229 l~k-------------------------~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-------- 275 (508)
T KOG1840|consen 229 LEK-------------------------TSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-------- 275 (508)
T ss_pred HHH-------------------------ccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--------
Confidence 000 11234566777777899999999999999999999999999888
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy597 258 LEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAAT 337 (546)
Q Consensus 258 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~ 337 (546)
|.++|.++.++.+||.+|...|+|++|..++++|+.++.+..+.+++.+...
T Consensus 276 ----------------------------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 276 ----------------------------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+.+++.++..++++++|..++++++++....+|.+++..+..+.+||.+|..+|+|++|.++|++|+.+.+...+..++.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc---CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCC
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF---GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD 494 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 494 (546)
....+++||..|...+++.+|...|.++..+.+..+. +....+.+++-.|...|+++.|.++...++...+...+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~ 487 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTA 487 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999998844322 2233445566669999999999999999999999888887
Q ss_pred CHHHHHHHHHHHHHH
Q psy597 495 DSNVAKTKNNLASCY 509 (546)
Q Consensus 495 ~~~~~~~~~~La~~y 509 (546)
++.....-..++...
T Consensus 488 ~~~~~~~~~~~~~~~ 502 (508)
T KOG1840|consen 488 SPTVEDEKLRLADLS 502 (508)
T ss_pred CcchhHHHHhhhHHH
Confidence 777665555554443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=208.13 Aligned_cols=247 Identities=16% Similarity=0.107 Sum_probs=211.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
...|....++..+|.++...|++++|+..|+++++ .
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--------------------------------------------l 360 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--------------------------------------------L 360 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------c
Confidence 34688889999999999999999999999999988 3
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....++..+|.++...|++++|+.+|++++.. .|....+++.+|.++...|++++|+.+|++++.+.
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--- 429 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--- 429 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 5677788999999999999999999999999987 34446789999999999999999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|.....+.++|.++...|++++|+..|++++.. .|..+.++..+|.++..+|++++|+..|++++.+
T Consensus 430 -----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 430 -----PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred -----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 777888999999999999999999999999988 7778889999999999999999999999999998
Q ss_pred hhhcccCcccC--CCh-hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 449 AHEREFGACDG--DNK-PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 449 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
.+......... ... ....+...+++.+|...+++++.+ +|....++..+|.++..+|++++|+.+|+++
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 76532211111 011 111233468899999999999876 5666778999999999999999999999999
Q ss_pred HHHhhh
Q psy597 526 LTRAHE 531 (546)
Q Consensus 526 l~~~~~ 531 (546)
+++.+.
T Consensus 569 ~~l~~~ 574 (615)
T TIGR00990 569 AELART 574 (615)
T ss_pred HHHhcc
Confidence 998764
|
|
| >PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-23 Score=183.09 Aligned_cols=172 Identities=62% Similarity=0.871 Sum_probs=66.4
Q ss_pred HcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCC
Q psy597 77 ELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDS 156 (546)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~ 156 (546)
++|++++|||.++..||+.+++++++|+++|+|||+||.||+++++.+++.++.+++.+++++++++||+||..+.+|+.
T Consensus 1 eL~~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~ 80 (181)
T PF09311_consen 1 ELGLGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDL 80 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHT---------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCC--CCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHH
Q psy597 157 DIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNL--SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVA 234 (546)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 234 (546)
........ ..........+.+.++||+.+....... .+.+..........+...|...+++.++...|...|+|+.|
T Consensus 81 ~~~~~~~e-~~e~~~~~ei~~L~~l~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~q~~~q~r~eva 159 (181)
T PF09311_consen 81 IESRTAAE-HEEEKLRSEIDTLQELFPNLEEELRAEISELPSPKSEMAQLQSQGYEIPARLRTLHNLVIQYESQGRYEVA 159 (181)
T ss_dssp ----------------------------------------------------S-TTS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccchhhh-hhhhcccccchhHHHcCccccccccccccccccccchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443211 1122344567888889998877765554 44555667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy597 235 VPLCKQALEDLEKTS 249 (546)
Q Consensus 235 ~~~~~~al~~~~~~~ 249 (546)
++.++++++...+..
T Consensus 160 v~~~KqalEdl~~~~ 174 (181)
T PF09311_consen 160 VPLCKQALEDLEKES 174 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999887776
|
This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F. |
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=189.81 Aligned_cols=287 Identities=13% Similarity=0.047 Sum_probs=235.7
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
++..+......+++..-++..+|..|+..++|++|..+|+.+-+.-+-.. ....++...+-...+....-..+..
T Consensus 338 A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv----~~meiyST~LWHLq~~v~Ls~Laq~- 412 (638)
T KOG1126|consen 338 ALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV----KGMEIYSTTLWHLQDEVALSYLAQD- 412 (638)
T ss_pred HHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cchhHHHHHHHHHHhhHHHHHHHHH-
Confidence 34445554455677778899999999999999999999988766533222 1222333333232222222111111
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
+ ....|..+..|..+|.+|..+++++.|++.|++|+.+ +|..+.+|..+|.-+.....++.|..+|+
T Consensus 413 --L---i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 413 --L---IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred --H---HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 1 3356778889999999999999999999999999988 67779999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+|+.. +|....+|+.+|.+|.++++++.|+-+|++|+++ .|........+|.++.+.|+.++|+
T Consensus 480 ~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 480 KALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHH
Confidence 99988 5899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
.+|++|+.+.+.++ ......+..+...+++.+|+..+++..++ .|....++..+|.+|.+.|+.+.|+
T Consensus 544 ~~~~~A~~ld~kn~----l~~~~~~~il~~~~~~~eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNP----LCKYHRASILFSLGRYVEALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHhcCCCCc----hhHHHHHHHHHhhcchHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999876654 33455667788889999999999888877 7888999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..|--|+++.|..
T Consensus 612 ~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 612 LHFSWALDLDPKG 624 (638)
T ss_pred HhhHHHhcCCCcc
Confidence 9999999987654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-20 Score=197.94 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=165.2
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
++|++|+..|++++... ...|..+.++..+|.++...|++++|+..|++++++ +|....++..+|.+
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~ 374 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASM 374 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHH
Confidence 45566666666665542 225677788999999999999999999999999988 37888899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 466 (546)
+...|++++|+.+|++++++ +|....+++.+|.++...|++++|+.+|++++.+.|... ......+.+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~----~~~~~la~~ 442 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI----FSHIQLGVT 442 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH----HHHHHHHHH
Confidence 99999999999999999998 777788999999999999999999999999999866543 234456777
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 467 ~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+...|++++|+..|.+++.. .|....++..+|.++...|++++|+..|++++.+.|+
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 88999999999999999976 5777888999999999999999999999999998765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-18 Score=181.81 Aligned_cols=203 Identities=17% Similarity=0.155 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..++ .+...|++++|+..+++++.... +........++.++...|++++|+..|++++.. +|
T Consensus 180 a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~-------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p 243 (656)
T PRK15174 180 MIATCL-SFLNKSRLPEDHDLARALLPFFA-------LERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GL 243 (656)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhcCC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 344433 46778888888888888766521 111223456688899999999999999999987 37
Q ss_pred HHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 375 DVAKQLNNLALLCQNQSKYEE----VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
....++.++|.++...|++++ |+..|++++.+ .|....++.++|.++..+|++++|+..+++++...|
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 778899999999999999996 89999999998 788889999999999999999999999999999866
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
... ......+..+...|++++|...|.+++.. +|.....+..+|.++...|++++|+..|+++++..|
T Consensus 316 ~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 316 DLP----YVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred CCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 543 23445667788899999999999998876 566666677789999999999999999999999987
Q ss_pred hhc
Q psy597 531 ERE 533 (546)
Q Consensus 531 ~~~ 533 (546)
+..
T Consensus 384 ~~~ 386 (656)
T PRK15174 384 SHL 386 (656)
T ss_pred hhc
Confidence 753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-18 Score=170.92 Aligned_cols=298 Identities=14% Similarity=0.125 Sum_probs=182.1
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHH--HhhhhhhHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYDIVKQA 276 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~--l~~~~~~~~~~~~~ 276 (546)
.+...+.+....+|.++.++..+|.++...|++++|+..+++++.... .........+...+ +....+...+...+
T Consensus 53 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 130 (389)
T PRK11788 53 KAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD--LTREQRLLALQELGQDYLKAGLLDRAEELF 130 (389)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 355555556666788888999999999999999999999998876210 00000111111111 11111222222222
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
... ....|....++..++.++...|++++|+..+.+++...+. +........+..+|.++...|++++|+.
T Consensus 131 ~~~------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 131 LQL------VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHH------HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 111 1124555667777778888888888888877777654211 1112234456677777778888888888
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~ 435 (546)
+|+++++.. |....++..+|.++...|++++|+.+|++++.. +|. ...++..++.+|...|++
T Consensus 202 ~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 202 LLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--------DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------ChhhHHHHHHHHHHHHHHcCCH
Confidence 888877762 555667777788888888888888888877765 333 345567777788888888
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--cC
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK--QG 513 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~--~g 513 (546)
++|...+++++...|+. ......+..+...|++++|...+.+++.. .|........++..+.. .|
T Consensus 266 ~~A~~~l~~~~~~~p~~-----~~~~~la~~~~~~g~~~~A~~~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 266 AEGLEFLRRALEEYPGA-----DLLLALAQLLEEQEGPEAAQALLREQLRR--------HPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CcCHHHHHHHHHHhhhccCCc
Confidence 88888887777764322 11234455566777777777777777765 45444333233322211 45
Q ss_pred CHHHHHHHHHHHHH--HhhhhccCC
Q psy597 514 KYKEAEILYKQVLT--RAHEREFGA 536 (546)
Q Consensus 514 ~~~~A~~~~~~al~--~~~~~~~~~ 536 (546)
+..+|+..+++.++ +.+++.+..
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCCEEC
Confidence 77777777777775 334444443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-17 Score=187.70 Aligned_cols=413 Identities=16% Similarity=0.153 Sum_probs=261.5
Q ss_pred HHHHHHHHhhHHHHHcC-cCHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHH-------HHHHH--
Q psy597 63 EEKRNMVKNSLEIIELG-LNEAQVMTALAGHL---QNVEAEKQKLRTQVRRLVQENAWLRDELANT-------QQKLQ-- 129 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~-------~~~l~-- 129 (546)
+.+-.++.++|+++..- -++..++..++... ...+ +-++.-..+.++..++.+++...... .+.++
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~-~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSD-GAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 34566777788777543 22344444443322 2222 33344445555556665554322221 11233
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChhhHHHhhhcCC
Q psy597 130 SSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGY 209 (546)
Q Consensus 130 ~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
......++++++++.++-+.... +.. . +-....+.. ........+.+...+.....
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~---p~~---~-------------~la~~y~~~-----~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA---PPE---L-------------DLAVEYWRL-----VAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC---CCC---h-------------HHHHHHHHH-----HhhCCccHHHHHHHHHHHHH
Confidence 34455578888877664443211 100 0 000000000 00011234567777777777
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
.+|.++.++..+|.+++..|++++|+..+++++...+... +....+...+...+...+.........
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 8899999999999999999999999999999865321000 001111111222222222211111100
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
........ ...+|.. ....+|.++...|++++|+..|++++... |....++..+|.+|...|++++|+.
T Consensus 256 ~~L~~~~~-~~~dp~~--~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~ 324 (1157)
T PRK11447 256 SQLAEQQK-QLADPAF--RARAQGLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVA 324 (1157)
T ss_pred HHHHHHHH-hccCcch--HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 00000000 1112221 22456899999999999999999999873 4447889999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 357 LCKRALEIREKVLGKEHPD-----------VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~L 425 (546)
+|+++++.. ++++. .......+|.++...|++++|+.+|++++.+ +|....++..+
T Consensus 325 ~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~L 391 (1157)
T PRK11447 325 QFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGL 391 (1157)
T ss_pred HHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 999999874 22221 1223456688999999999999999999998 77778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc--------------------------------------cCCChhhHHH
Q psy597 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGAC--------------------------------------DGDNKPIWQD 467 (546)
Q Consensus 426 a~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 467 (546)
|.+|..+|++++|+.+|++++...+.+..... ......+..+
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999988665321100 0000112234
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|++.+|+..|++++.. .|....+++.+|.+|...|++++|+..++++++..|..
T Consensus 472 ~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 5668888888888888877 67778889999999999999999999999999877654
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=161.64 Aligned_cols=286 Identities=19% Similarity=0.156 Sum_probs=233.4
Q ss_pred HHHhhhcCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 201 FAQQVNAGYEIPA-RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 201 ~~~~~~~~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
+....+.+.++-. ....|..+|..|+..++|++|+.+-..-+.+.+..+
T Consensus 40 f~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg------------------------------ 89 (639)
T KOG1130|consen 40 FKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG------------------------------ 89 (639)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc------------------------------
Confidence 3344445555443 445678899999999999999999887777666555
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--------- 350 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--------- 350 (546)
+....+.+.-+||..+...|.|++|+.+..+-+.+.+.. ++......+++++|.+|...|+
T Consensus 90 --------dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee 159 (639)
T KOG1130|consen 90 --------DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEE 159 (639)
T ss_pred --------chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhh
Confidence 344455667789999999999999999999999999988 7777788999999999998876
Q ss_pred -----------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 351 -----------YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA 419 (546)
Q Consensus 351 -----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 419 (546)
++.|.++|..-+++.++. ++......++.+||..|+-+|+|+.|+.+.+.-+.+.+.. +|....-
T Consensus 160 ~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeR 235 (639)
T KOG1130|consen 160 KGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAER 235 (639)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHH
Confidence 566777888888877776 4455677899999999999999999999999999998877 5566778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc--ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA--CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN 497 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 497 (546)
.++.|||.++...|+++.|+++|+..+.++.+-.... ...-+.++..|....++..|+.++.+-+.+.+... +...
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriG 313 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIG 313 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh
Confidence 8999999999999999999999999998876643322 22334455567788889999999999999888773 3566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 498 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 498 ~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...+++.||..|...|..++|+.+.+..+++..+-
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999887653
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-17 Score=154.96 Aligned_cols=279 Identities=16% Similarity=0.168 Sum_probs=217.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|...-.-...|.+.+.+.++++|+..|+...+.-|-..++.+ ++...+-...+.....-.+... ..-+.
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd----lySN~LYv~~~~skLs~LA~~v------~~idK 327 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD----LYSNVLYVKNDKSKLSYLAQNV------SNIDK 327 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH----HHhHHHHHHhhhHHHHHHHHHH------HHhcc
Confidence 5666666777888999999999999999988774222222211 1111111111101000000000 11234
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.....+|+.|...++.++|+.+|++|+.+ +|....+|..+|.-|..+.+...|+..|++|+++.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~----- 394 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN----- 394 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-----
Confidence 45667888999999999999999999999998 56778999999999999999999999999999995
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|....+|+.||..|.-++-+.=|+-+|++|+.. .|+....|..||.||.+.++.++|+.+|+.++....
T Consensus 395 ---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 395 ---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred ---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999998 888999999999999999999999999999998632
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.. ......++..+...++..+|..+|.+.++.. ...+.-.+....+...|+..+.+.+++++|..+...++.-
T Consensus 464 te----~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TE----GSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cc----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 21 1344556667888899999999999999876 3344446777888888999999999999999988777653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=185.66 Aligned_cols=284 Identities=21% Similarity=0.177 Sum_probs=149.0
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
.......|..+..+..+|.++...|++++|+..|+++++..+... ++++.|...+..++...+....
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 333344566667778888888888888888888887776533221 3333344443333322222111
Q ss_pred HHHHH-----------HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy597 272 IVKQA-----------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN 340 (546)
Q Consensus 272 ~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~ 340 (546)
..... .....+.......|.....+..+|.++...|++++|+..|.+++... ++. ..+..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~ 741 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-----PSS----QNAIK 741 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCc----hHHHH
Confidence 10000 00000011111223334445555555555666666666665555542 111 34445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
++.++...|++++|...+++++.. .|....+++.+|.+|...|++++|+.+|+++++. .|....
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~ 805 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAV 805 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHH
Confidence 555666666666666666555554 2444555566666666666666666666666655 444555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 500 (546)
++.++|.++...|+ .+|+.++++++...+.+. ......+..+...|++++|...|+++++. .|....
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~ 872 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIP----AILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAA 872 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChH
Confidence 55666666666666 556666666665543321 11223444455566666666666666654 344455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
++..++.++...|++++|+.++++++
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666666666666666666666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=187.87 Aligned_cols=296 Identities=17% Similarity=0.166 Sum_probs=191.5
Q ss_pred CChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc--hhHHHh------hHHHH--Hhh
Q psy597 196 TPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK--YEAAET------LEDCA--LRS 265 (546)
Q Consensus 196 ~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~------~~~~~--l~~ 265 (546)
....+...+.+.....|.++.++..+|.+|...|++++|+.+|+++++..+..... +..... ....+ ...
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455666666667778889999999999999999999999999999876544321 100000 00000 111
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHH-----------
Q psy597 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV----------- 334 (546)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~----------- 334 (546)
..+...+...+..+. ...|....++..+|.++...|++++|+.+|++++.+.+. .+..
T Consensus 364 ~g~~~eA~~~~~~Al------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-----~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 364 ANNLAQAERLYQQAR------QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-----NTNAVRGLANLYRQQ 432 (1157)
T ss_pred CCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhc
Confidence 112222222222222 134556678999999999999999999999999987422 1110
Q ss_pred ----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 335 ----------------------------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 335 ----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
...+..+|.++...|++++|+.+|+++++.. |....+++.+|.+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------PGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 1233456778888999999999999999884 7778899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH----------------------------------------------
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK---------------------------------------------- 420 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~---------------------------------------------- 420 (546)
|...|++++|+..|+++++. .|..+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 99999999999999999875 222222
Q ss_pred ----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhch
Q psy597 421 ----------------------------TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK 472 (546)
Q Consensus 421 ----------------------------~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (546)
.+..+|.+|...|++++|+..|++++...|.+. ......+.++...|+
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~----~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA----DARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCC
Confidence 344455555556666666666666655543321 223334444555566
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+++|+..+.+++.. .|....++..+|.++...|++++|..+|++++...+
T Consensus 653 ~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 653 LAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 66665555555433 334445555666666666666666666666666543
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=158.04 Aligned_cols=242 Identities=17% Similarity=0.145 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
-+.++...|..++..|++-.|...|+.++.+ +|...
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------------------------------------------~~~~~ 360 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------------------------------------------DPAFN 360 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------------------------------------------Ccccc
Confidence 4788999999999999999999999999984 34444
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..|..+|.+|....+..+....|++|.++ +|..+.+|+..|.+++-+++|++|+.-|++++++ .
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~ 424 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------D 424 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------C
Confidence 45899999999999999999999999988 5666889999999999999999999999999999 4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|..+..+..++.+.++++++++++..|+.+... -|..+.+++..|.++..+++|++|++.|+.++.+.+...
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999988 788889999999999999999999999999999877633
Q ss_pred cCcccCC--ChhhH-HHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 454 FGACDGD--NKPIW-QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 454 ~~~~~~~--~~~~~-~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
...+.+. ..-+. ...-.+++..|...+.+|+++ +|..-.++..||.+..++|+.++|+++|+++..+.+
T Consensus 497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2222221 11122 233448899999999999988 899999999999999999999999999999998875
Q ss_pred h
Q psy597 531 E 531 (546)
Q Consensus 531 ~ 531 (546)
.
T Consensus 569 t 569 (606)
T KOG0547|consen 569 T 569 (606)
T ss_pred h
Confidence 4
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-17 Score=178.87 Aligned_cols=281 Identities=11% Similarity=0.002 Sum_probs=201.1
Q ss_pred HhhhcCCCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy597 203 QQVNAGYEIPA--RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQ 280 (546)
Q Consensus 203 ~~~~~~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 280 (546)
......+..|. .+.+++.+|.++.. |++.+|+..|.+++...+... ........+....+...+...+..+
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al~~~Gr~eeAi~~~rka- 535 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQAYQVEDYATALAAWQKI- 535 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 33445556677 89999999999987 899999999999988654321 1101111111222222222222221
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
....+. ...+..+|.++...|++++|+.+|++++... |.....+..++......|++++|+..|++
T Consensus 536 -----~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 536 -----SLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--------LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred -----hccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111122 2335677888888888888888888888652 33344455566666667888888888888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++++. |. ..++.++|.++...|++++|+.+|++++.+ +|..+.++.++|.++...|++++|+.
T Consensus 602 AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 602 SLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88773 54 677888888888888888888888888888 77777888888888888888888888
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.|++++...|.+. ......++++...|++++|+..|++++++ .|..+.+....|.+.....+++.|.+
T Consensus 665 ~l~~AL~l~P~~~----~a~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 665 MLERAHKGLPDDP----ALIRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 8888888765443 44567777788888888888888888877 67777888888888888888888888
Q ss_pred HHHHHHHHhhhhc
Q psy597 521 LYKQVLTRAHERE 533 (546)
Q Consensus 521 ~~~~al~~~~~~~ 533 (546)
.+.++....+...
T Consensus 733 ~~~r~~~~~~~~~ 745 (987)
T PRK09782 733 EVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhhcCccch
Confidence 8888888777665
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-17 Score=181.55 Aligned_cols=289 Identities=19% Similarity=0.134 Sum_probs=206.9
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...++..+.......|..+.+++.+|.+|...|+|++|+..++++++..+... .........+........+..
T Consensus 38 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~~~~a~~-- 111 (899)
T TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN----QVLPLLARAYLLQGKFQQVLD-- 111 (899)
T ss_pred hHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh----hhHHHHHHHHHHCCCHHHHHH--
Confidence 44566666666677788889999999999999999999999999987533211 111111112211112111111
Q ss_pred HHHHHhccC-CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 277 KVAQILGSG-GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 277 ~~~~~l~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.+... ....+....++..+|.++...|++++|...|++++... |....++..+|.++...|++++|+
T Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~ 179 (899)
T TIGR02917 112 ----ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PRSLYAKLGLAQLALAENRFDEAR 179 (899)
T ss_pred ----hhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHHCCCHHHHH
Confidence 11111 23556777888899999999999999999999988763 334567888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
..+++++... |....++..+|.++...|++++|+..|++++.. .|....++..++.++...|++
T Consensus 180 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~g~~ 243 (899)
T TIGR02917 180 ALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL--------RPNNPAVLLALATILIEAGEF 243 (899)
T ss_pred HHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCH
Confidence 9999988763 666778888899999999999999999998887 666677888888888889999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
++|...++.++...+... ......+..+...|+++.|...|.+++.. .|.....+..+|.++...|++
T Consensus 244 ~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~g~~ 311 (899)
T TIGR02917 244 EEAEKHADALLKKAPNSP----LAHYLKALVDFQKKNYEDARETLQDALKS--------APEYLPALLLAGASEYQLGNL 311 (899)
T ss_pred HHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCchhHHHHHHHHHHHcCCH
Confidence 999988888887654422 12223344566677788888877777765 444455666777777777777
Q ss_pred HHHHHHHHHHHHHhhh
Q psy597 516 KEAEILYKQVLTRAHE 531 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~ 531 (546)
++|..++++++...|.
T Consensus 312 ~~A~~~~~~~~~~~p~ 327 (899)
T TIGR02917 312 EQAYQYLNQILKYAPN 327 (899)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777777777776554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=169.08 Aligned_cols=249 Identities=18% Similarity=0.208 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 213 ARLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.....+..+|..|.... +..+|+..|.+ +- ..++
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp-------------------------------------------~h~~ 350 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-LP-------------------------------------------SHHY 350 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH-------------------------------------------HhcC
Confidence 55667777777776544 44567777766 22 2456
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKT--------------------------LGENHAAVAATLNNLAVL 344 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~g~~~~~~~~~~~~la~~ 344 (546)
...+++..+|..|+.+++|++|..+|+.+-.+.+-. +-..+|..+.+|..+|.+
T Consensus 351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 667999999999999999999999999876653211 112345567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
|..+++++.|+++|++|+.+ +|..+.+|..+|.=+.....+|.|..+|++|+.+ +|....+|+.
T Consensus 431 fSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYG 494 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYG 494 (638)
T ss_pred hhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHh
Confidence 99999999999999999999 5889999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy597 425 LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN 504 (546)
Q Consensus 425 La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 504 (546)
+|.+|.++++++.|.-+|++|+.+.|.+. ......+..+...|+.++|+..|++|+.+ +|..+...+.
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~ns----vi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~ 562 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNS----VILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYH 562 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccch----hHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHH
Confidence 99999999999999999999999876543 44566677788999999999999999977 7888889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 505 LASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 505 La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.|.++...+++++|+..+++.-++.|+.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 99999999999999999999999888753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=149.44 Aligned_cols=206 Identities=25% Similarity=0.312 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+..+|.++...|++++|+..++++++. .|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------------------------------------------~p~ 63 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------------------------------------------DPD 63 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------------------Ccc
Confidence 456788999999999999999999999999873 355
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.++...|++++|+.++++++... |....++.++|.++...|++++|+.+|.+++.. .
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~ 129 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLN--------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------P 129 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------c
Confidence 56788999999999999999999999999873 333568899999999999999999999999875 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+.....+.++|.++...|++++|..++.+++.. .|....++..+|.++...|++++|..++++++...
T Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 199 (234)
T TIGR02521 130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-- 199 (234)
T ss_pred ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 23455677889999999999999999999999987 56667788999999999999999999999888741
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
|.....+..++.++...|+.++|..+.+.+....
T Consensus 200 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 200 --------------------------------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred --------------------------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 2223445577888899999999999888776643
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=161.65 Aligned_cols=283 Identities=16% Similarity=0.111 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.....+..|..+...|++++|+..|.++++..+... .+............+...+........ ...........
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~ 107 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----ELHLALGNLFRRRGEVDRAIRIHQNLL--SRPDLTREQRL 107 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCcHHHHHHHHHHHh--cCCCCCHHHHH
Confidence 345567778999999999999999999998644321 111111112222222222222222221 11111223345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+|.+|...|++++|+.+|.+++.. .|....++..++.++...|++++|+..+.+++..... +..
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~ 176 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLR 176 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cch
Confidence 78899999999999999999999999865 3445678999999999999999999999998876310 111
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
......+..+|.++...|++++|+.+|+++++. .|....++..+|.+|...|++++|+.+|++++...+...
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 234556788999999999999999999999997 677788999999999999999999999999998644321
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.......+..+...|++++|...+.+++.. .|... .+..++.++...|++++|...++++++..|+..
T Consensus 249 ---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 249 ---SEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 112234556688899999999999998876 34333 347899999999999999999999999887653
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-17 Score=158.37 Aligned_cols=280 Identities=16% Similarity=0.131 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.+.+.+...+..++..++|.+..+.+...++..+-...-+..-.. .+--..+........... ....|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia----~l~el~~~n~Lf~lsh~L------V~~yP~~ 311 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA----CLYELGKSNKLFLLSHKL------VDLYPSK 311 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH----HHHHhcccchHHHHHHHH------HHhCCCC
Confidence 456778888999999999999999999998865544321111000 110001111111100000 3367888
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..|+..|..|...|++.+|..+|.++..+ ++..+.+|...|..|...|..++|+..|..|-++.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------- 376 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------- 376 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-------
Confidence 899999999999999999999999999988 57778999999999999999999999999999986
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
|..-.....+|.-|...+++.-|..+|.+|+.+ .|..+..+..+|.+.+..+.|.+|..+|+.++...+..
T Consensus 377 -~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 377 -PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred -cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 444445677899999999999999999999999 78888899999999999999999999999999655542
Q ss_pred ccC---cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 453 EFG---ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 453 ~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
... .....+++|..++..+.+.+|+.+|++++.. .|..+.++..+|-+|..+|+++.|+++|.+++.+.
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 221 2223567888899999999999999999987 78889999999999999999999999999999998
Q ss_pred hhhcc
Q psy597 530 HEREF 534 (546)
Q Consensus 530 ~~~~~ 534 (546)
|.+.+
T Consensus 520 p~n~~ 524 (611)
T KOG1173|consen 520 PDNIF 524 (611)
T ss_pred CccHH
Confidence 87743
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-17 Score=152.02 Aligned_cols=267 Identities=19% Similarity=0.166 Sum_probs=221.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+..-|.-+++.|++...+.+|+.|++.- ..+......+|.
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvG----------------------------------------TeDl~tLSAIYs 59 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVG----------------------------------------TEDLSTLSAIYS 59 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhc----------------------------------------chHHHHHHHHHH
Confidence 3456778899999999999999999851 224456778899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
.||.+|+..++|.+|+++-.--+.+.+.. ++....+.+..+||.++...|.|++|+.++.+-+.+.+.. ++.....
T Consensus 60 QLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~ 135 (639)
T KOG1130|consen 60 QLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLES 135 (639)
T ss_pred HhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhh
Confidence 99999999999999999998888877766 5666667888999999999999999999999999999888 5556778
Q ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 378 KQLNNLALLCQNQSK--------------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 378 ~~~~~la~~~~~~g~--------------------~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
.+++|+|.+|...|+ ++.|.++|..-+++.++. +|......++.+||..|+-+|+|+.
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHH
Confidence 999999999998775 345566666666665555 4455677899999999999999999
Q ss_pred HHHHHHHHHHhhhhccc--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 438 AEILYKQVLTRAHEREF--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
|+.+-+.-+.++.+.+. ..-....+++.++.-.|++..|.++|..++.+..+.. +....+...+.||..|.-..++
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHH
Confidence 99999998888776332 2234567788889999999999999999998877763 3566778889999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 516 KEAEILYKQVLTRAHER 532 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~~ 532 (546)
++|+.|+.+-+.+..+-
T Consensus 292 ~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQEL 308 (639)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=169.16 Aligned_cols=293 Identities=12% Similarity=0.052 Sum_probs=222.1
Q ss_pred CCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHH
Q psy597 194 SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIV 273 (546)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 273 (546)
......+...........|..+.+++.+|.+....|++++|+..|++++...|.... +.......+....+...+.
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DVLLVASVLLKSKQYATVA 130 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHH
Confidence 344555666666667778999999999999999999999999999999987665431 2222222222223333333
Q ss_pred HHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 274 KQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKE 353 (546)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~ 353 (546)
..+..+. ...|....++..+|.++...|++++|+..+.+++... +++ ..++..++ .+...|++++
T Consensus 131 ~~l~~Al------~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~---~~a~~~~~-~l~~~g~~~e 195 (656)
T PRK15174 131 DLAEQAW------LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPR---GDMIATCL-SFLNKSRLPE 195 (656)
T ss_pred HHHHHHH------HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCC---HHHHHHHH-HHHHcCCHHH
Confidence 3333322 1346667788889999999999999999998777653 222 33444443 4788899999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|+..+++++... ++........++.++...|++++|+..|++++.. .|....++.++|.+|...|
T Consensus 196 A~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 196 DHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC
Confidence 999998887652 1122234456788899999999999999999987 6777889999999999999
Q ss_pred CHHH----HHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 434 KYKE----AEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 434 ~~~e----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
++++ |+..|++++...|... ......+..+...|++++|...+++++.. .|....++..+|.+|
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l 328 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSDNV----RIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARAL 328 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 9986 8999999999866432 34556677789999999999999999987 677778899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhh
Q psy597 510 LKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|++++|+..|++++...|..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876643
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=136.29 Aligned_cols=209 Identities=22% Similarity=0.242 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
.....+...+|..|+..|++..|...+++|++ .+|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~--------------------------------------------~DPs 67 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE--------------------------------------------HDPS 67 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------------------hCcc
Confidence 44567788889999999999999999999988 4677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.+|...|+.+.|.+.|++|+.+ +|...++++|.|..++.+|+|++|...|++|+.. +
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P 133 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------P 133 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------C
Confidence 8888899999999999999999999999988 5666888999999999999999999999998876 5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+....++.|+|.|..+.|+++.|..+|++++++ +|..+.+...++...+..|+|..|..+++.....
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--- 202 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--- 202 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc---
Confidence 66777888899999999999999999999999988 7888888888999999999999998888776553
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.+..+..+.....+-...|+-+.|..|=.+.-+.+|.
T Consensus 203 -------------------------------------------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 203 -------------------------------------------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred -------------------------------------------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 1233445555556666677777777776666666654
Q ss_pred h
Q psy597 532 R 532 (546)
Q Consensus 532 ~ 532 (546)
.
T Consensus 240 s 240 (250)
T COG3063 240 S 240 (250)
T ss_pred c
Confidence 3
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-16 Score=171.08 Aligned_cols=264 Identities=11% Similarity=0.010 Sum_probs=187.6
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
........|... ....+|..+...|++++|+..|++++...+. ..+.......+....+...+......+..
T Consensus 499 ~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-----~~a~~~la~all~~Gd~~eA~~~l~qAL~-- 570 (987)
T PRK09782 499 WLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-----NEDLLAAANTAQAAGNGAARDRWLQQAEQ-- 570 (987)
T ss_pred HHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 333333445433 3666777888999999999999987553111 11111111111222222222222222221
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
..|.....+..++......|++++|+..|++++.+ .|. ..++.++|.++...|++++|+..|++++.
T Consensus 571 ----l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 571 ----RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred ----cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22444555556666666779999999999999987 343 67899999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
+. |....++.++|.++...|++++|+..|++++++ .|..+.++.++|.++...|++++|+.+|+
T Consensus 638 l~--------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 638 LE--------PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred hC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 94 888899999999999999999999999999998 88889999999999999999999999999
Q ss_pred HHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 444 QVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517 (546)
Q Consensus 444 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~ 517 (546)
+++...|+.. ......++......++..+...+.++..+ .+... +....|.++...+++-.
T Consensus 702 ~Al~l~P~~a----~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~~~~~~ 762 (987)
T PRK09782 702 LVIDDIDNQA----LITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTANNNVGG 762 (987)
T ss_pred HHHhcCCCCc----hhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhcccccC
Confidence 9999865432 22334444455555555555555555543 44444 77888999999888744
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=151.48 Aligned_cols=209 Identities=17% Similarity=0.105 Sum_probs=158.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+..++.+|.+|...|++++|+..|.+++.+ .|..+.+++.+|.++...|++++|+..|++++++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--- 127 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--- 127 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 44566888999999999999999999999999987 4555789999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|....++.++|.++...|++++|+..|++++++ +|..+.. .....+....+++++|+..|.++..
T Consensus 128 -----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--------~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 128 -----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--------DPNDPYR-ALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4778889999999999999999999999999987 3433321 1112234567899999999988765
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..+.. ....+......|+...+ ..+..+...+..... -.|....+|+.+|.+|...|++++|+.+|++|++
T Consensus 194 ~~~~~-------~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~-l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 194 KLDKE-------QWGWNIVEFYLGKISEE-TLMERLKAGATDNTE-LAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred hCCcc-------ccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 43211 11123444555665443 233333322110000 0355678999999999999999999999999999
Q ss_pred Hhh
Q psy597 528 RAH 530 (546)
Q Consensus 528 ~~~ 530 (546)
..|
T Consensus 265 ~~~ 267 (296)
T PRK11189 265 NNV 267 (296)
T ss_pred hCC
Confidence 875
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=134.52 Aligned_cols=172 Identities=28% Similarity=0.338 Sum_probs=154.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+....+.+...||.-|+..|++..|...+++|++. +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---
Confidence 34566788999999999999999999999999988 6777889999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+|..+.+++|.|..++.+|+|++|..+|++|+.. |..+..+.++.|+|.|..+.|+++.|..+|++++.
T Consensus 99 -----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4889999999999999999999999999999987 77788899999999999999999999999999998
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. +|........++..++..|+|..|..++++...
T Consensus 168 ~----------------------------------------------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 168 L----------------------------------------------DPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred h----------------------------------------------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 6 455556677888888888999988888887654
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-16 Score=141.74 Aligned_cols=237 Identities=17% Similarity=0.152 Sum_probs=200.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
..+|.||++.|-+.+|.+.++.+++- ...++.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------------------------------------------~~~~dTfll 261 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------------------------------------------FPHPDTFLL 261 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------------------------------------------CCchhHHHH
Confidence 56899999999999999999999872 223455778
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
|+.+|....+...|+..|.+.++.+ |.....+..++.++..++++++|.++|+.+++. +|....
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvE 325 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVE 325 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccce
Confidence 8999999999999999999988764 555777888999999999999999999999987 577788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 458 (546)
+...+|.-|+..++++-|+.+|++.+.+ ....+..+.|+|.|++..++++-++..|++++..+...+ ...+
T Consensus 326 aiAcia~~yfY~~~PE~AlryYRRiLqm--------G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~-~aaD 396 (478)
T KOG1129|consen 326 AIACIAVGYFYDNNPEMALRYYRRILQM--------GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG-QAAD 396 (478)
T ss_pred eeeeeeeccccCCChHHHHHHHHHHHHh--------cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc-hhhh
Confidence 8888888999999999999999999988 556677889999999999999999999999998765433 2335
Q ss_pred CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 459 GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 459 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.+.+++......|++..|..+|+-++.. ++....++.+||.+-.+.|+.++|..++..|-...|...
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 5666666677788999999999888854 788999999999999999999999999999998887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-16 Score=151.02 Aligned_cols=239 Identities=23% Similarity=0.227 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|.+...|..+|......++++.|+..|++++.. ++
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------------------------------------------~~ 75 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------------------------------------------DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc--------------------------------------------cc
Confidence 3667778888888888888888888888888763 22
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..+..++.+ ...+++++|+.++.++.+.. .....+.....++...|+++++...+.++...
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------ 139 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------ 139 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------
T ss_pred cccccccccccc-cccccccccccccccccccc---------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------
Confidence 334445666666 68899999999998887642 11344566777889999999999999997753
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
...+.....+..+|.++...|++++|+.+|+++++. .|....+...++.++...|+++++...+.......+
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 223567888999999999999999999999999999 888888999999999999999998888888777654
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.++ ......++++...|+++.|..+|++++.. .|..+..+..+|.++...|++++|..++++++...
T Consensus 212 ~~~----~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 212 DDP----DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp TSC----CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred CHH----HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence 433 34556788899999999999999999987 78888999999999999999999999999998754
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=148.66 Aligned_cols=303 Identities=19% Similarity=0.151 Sum_probs=227.4
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCch--------------hHHHhhHHHHHh
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKY--------------EAAETLEDCALR 264 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~a~~~~~~~l~ 264 (546)
.+...+.-....+|.++-.+...|.+.+..|+|-.|+.+|+.++.+.|....+. ..|...+.+++.
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 355556666778899999999999999999999999999999999877665332 223333333332
Q ss_pred hhhhhHHHH--------------HHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC
Q psy597 265 SRKESYDIV--------------KQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN 330 (546)
Q Consensus 265 ~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 330 (546)
..+....+. ..-.....+.+.....+..+.++..|+..|+..|+|..+..+...++... ..
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~ 302 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----EN 302 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hh
Confidence 222211111 01111122222233456667789999999999999999999999998775 34
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
.+..+..++.+|.+|..+|+|++|..+|.+++... + ......+..+|..|...|+++.|+.+|++.+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~--d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---- 371 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----N--DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---- 371 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----C--CCccccccchhHHHHHhchHHHHHHHHHHHHHh----
Confidence 56778899999999999999999999999998874 1 224777889999999999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQG----KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g----~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
.|+...+...||.+|...+ ..+.|..+..+++...+.+. ..+..++. .+..++...++..|..|+.+
T Consensus 372 ----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~----~a~l~laq-l~e~~d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 372 ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS----EAWLELAQ-LLEQTDPWASLDAYGNALDI 442 (1018)
T ss_pred ----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH----HHHHHHHH-HHHhcChHHHHHHHHHHHHH
Confidence 7888889999999998886 56788888888887643221 11111121 45567777779999999998
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 487 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+...... .-+..++++|..++..|++.+|...|..|+...
T Consensus 443 L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 443 LESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 8776543 346788999999999999999999999999873
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=157.72 Aligned_cols=312 Identities=12% Similarity=0.027 Sum_probs=210.3
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCAL 263 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l 263 (546)
...+...+.+.....|.++. +..+|.++...|++++|+..++++++..|... +..+.|...+....
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 34455555555556677777 88888888888888888888888888655432 11222222221111
Q ss_pred hh---------hhh--------------------hHHHHHHHHHHHHh-ccCCCCChhHHHHHHHHHHHHHHhhcHHHHH
Q psy597 264 RS---------RKE--------------------SYDIVKQAKVAQIL-GSGGHDHPDVATMLNILALVYRDQNKYKEAA 313 (546)
Q Consensus 264 ~~---------~~~--------------------~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (546)
.. ... ...+.......... .......+....+......++...|++++|+
T Consensus 178 ~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 178 LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00 000 00111111111111 1111222333444443233446779999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHcCC
Q psy597 314 NLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH-PDVAKQLNNLALLCQNQSK 392 (546)
Q Consensus 314 ~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 392 (546)
..|++++... +..|..+..+ +|.+|...|++++|+.+|++++... +.. +........++.++...|+
T Consensus 258 ~~~~~ll~~~-----~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 258 SEYQRLKAEG-----QIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHP-----ETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHHhhccC-----CCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcC-----CCCCCCChHHHHHHHHHHHhccc
Confidence 9999988652 2234443333 5899999999999999999988642 111 1123556778888899999
Q ss_pred HHHHHHHHHHHHHHHHHh-----cCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhH
Q psy597 393 YEEVERYYQRALEIYELK-----LGPDDS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~-----~~~~~~--~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 465 (546)
+++|+.+++++....... .....| ....++..+|.++...|++++|+..+++++...|.+. ......+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~ 401 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYAS 401 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 999999999998762100 000011 3456788999999999999999999999999876653 34556666
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 466 QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 466 ~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
++...|++..|+..+++++.+ .|....++..+|.++...|++++|...++++++..|+++
T Consensus 402 l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 788899999999999999987 788888999999999999999999999999999888764
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=148.41 Aligned_cols=217 Identities=20% Similarity=0.215 Sum_probs=190.5
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
-+.....|..+..|+.+|..|...|++.+|..+|.++..
T Consensus 302 h~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~----------------------------------------- 340 (611)
T KOG1173|consen 302 HKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT----------------------------------------- 340 (611)
T ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-----------------------------------------
Confidence 344567899999999999999999999999999999977
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
-++..+.+|...|..|...|..++|+..|..|-++++.. ......+|.-|..+++++.|..+|..|+.+
T Consensus 341 ---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 341 ---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC--------HLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred ---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC--------cchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 467788899999999999999999999999999987543 234667899999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
+ |..+.++..+|.+.+..+.|.+|..+|+.++...+..... .+....++.|||.+|.+++++.+|+.+|++
T Consensus 410 ~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 410 A--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred C--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 6 8888999999999999999999999999999776665333 335667899999999999999999999999
Q ss_pred HHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 445 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
++...+.+. ......+.++...|+++.|+.+|.+|+.+
T Consensus 481 aL~l~~k~~----~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 481 ALLLSPKDA----STHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHcCCCch----hHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999866543 55677888899999999999999999977
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-14 Score=152.27 Aligned_cols=208 Identities=14% Similarity=0.018 Sum_probs=168.0
Q ss_pred CChhHHHHHHHHHHHHHHhh---------cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQN---------KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.+|..+.++..+|.+|...+ ++++|...+++++++ +|..+.++..+|.++...|++++|+..|
T Consensus 290 ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 290 MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45667778888888877543 489999999999988 4555788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
++++++. |..+.+++.+|.++...|++++|+..+++++++ +|....++..++.+++..|++++|
T Consensus 362 ~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 362 KQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL--------DPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHhccCHHHH
Confidence 9999994 888889999999999999999999999999998 666655666677778889999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
+..+++++...+... .......+.++...|++++|...+.+.... .|........++.+|...|+ +|
T Consensus 426 ~~~~~~~l~~~~p~~---~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~--~a 492 (553)
T PRK12370 426 IRLGDELRSQHLQDN---PILLSMQVMFLSLKGKHELARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSE--RA 492 (553)
T ss_pred HHHHHHHHHhccccC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHH--HH
Confidence 999999887642211 122345666788899999999998776544 56677778889999988884 88
Q ss_pred HHHHHHHHHHhhhh
Q psy597 519 EILYKQVLTRAHER 532 (546)
Q Consensus 519 ~~~~~~al~~~~~~ 532 (546)
...+++.++.....
T Consensus 493 ~~~l~~ll~~~~~~ 506 (553)
T PRK12370 493 LPTIREFLESEQRI 506 (553)
T ss_pred HHHHHHHHHHhhHh
Confidence 88888877655443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=152.95 Aligned_cols=248 Identities=13% Similarity=0.026 Sum_probs=187.5
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhh
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQ---------GRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKES 269 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~ 269 (546)
.+...+.+....+|..+.++..+|.+|... +++++|+..++++++
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-------------------------- 332 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-------------------------- 332 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--------------------------
Confidence 455566677778899999999999887644 347899999999988
Q ss_pred HHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 270 YDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349 (546)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g 349 (546)
..|..+.++..+|.++...|++++|+..|++++.+ .|..+.+++.+|.++...|
T Consensus 333 ------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 333 ------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAG 386 (553)
T ss_pred ------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCC
Confidence 35677788999999999999999999999999998 4555778999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 350 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
++++|+..+++++++. |.....+..++.+++..|++++|+..+++++.. ..|..+..+.++|.+|
T Consensus 387 ~~~eAi~~~~~Al~l~--------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l 451 (553)
T PRK12370 387 QLEEALQTINECLKLD--------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFL 451 (553)
T ss_pred CHHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHH
Confidence 9999999999999984 555555556677788899999999999999875 1356677889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 430 LKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 430 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
..+|++++|...+.++....+.. ......++..+...| +.|...+.+.++..... ......+..+|
T Consensus 452 ~~~G~~~eA~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--------~~~~~~~~~~~ 517 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQEITG----LIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--------DNNPGLLPLVL 517 (553)
T ss_pred HhCCCHHHHHHHHHHhhhccchh----HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--------hcCchHHHHHH
Confidence 99999999999998876543221 111222233344444 35666666655443211 11223378888
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q psy597 510 LKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~ 528 (546)
.-.|+.+.|..+ +++.+.
T Consensus 518 ~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 518 VAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhhHHHHHH-HHhhcc
Confidence 889999888877 666553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-16 Score=149.71 Aligned_cols=237 Identities=22% Similarity=0.262 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
+.+|.+++..|++++|+..+.+.+.. ..++.....|..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~------------------------------------------~~~~~~~~~~~~ 49 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQK------------------------------------------IAPPDDPEYWRL 49 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc------------------------------------------cccccccccccc
Confidence 36699999999999999999776652 124566678889
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
+|.+....++++.|+..|++++... +.....+..++.+ ...+++++|..++.++.+.. ....
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~ 111 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASD--------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPR 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--------ccccccccccccc-cccccccccccccccccccc---------cccc
Confidence 9999999999999999999998763 3345567777777 79999999999999887652 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 458 (546)
.+..+..++...|+++++...++++... +..+..+..+..+|.++.+.|++++|+..|++++...|.+. .
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~----~ 181 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP----D 181 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H----H
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----H
Confidence 4566777889999999999999998754 22456778899999999999999999999999999987654 2
Q ss_pred CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 459 GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 459 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.....+|.+...|+..++...+...... .|..+..+..+|.+|...|++++|+.+|+++++..|.++
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKA--------APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH---------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHH--------CcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 3445677788889888876666665544 244445677899999999999999999999999887653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=133.16 Aligned_cols=174 Identities=28% Similarity=0.375 Sum_probs=149.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+....+..+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 95 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-- 95 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 45566888999999999999999999999999876 34456788999999999999999999999999873
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|.....+.++|.++...|++++|+.+|.+++.. +..+.....+.++|.++...|++++|..++.+++.
T Consensus 96 ------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 96 ------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556678899999999999999999999999875 22455567788899999999999999999999887
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. .|.....+..+|.++...|++++|..++++++.
T Consensus 164 ~----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 164 I----------------------------------------------DPQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred h----------------------------------------------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 233345677899999999999999999999998
Q ss_pred Hh
Q psy597 528 RA 529 (546)
Q Consensus 528 ~~ 529 (546)
..
T Consensus 198 ~~ 199 (234)
T TIGR02521 198 TY 199 (234)
T ss_pred hC
Confidence 73
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-14 Score=145.25 Aligned_cols=219 Identities=17% Similarity=0.142 Sum_probs=155.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++++|.+|..+|+|++|..+|.+++... +++ ..-.++.+|.+|...|+++.|..+|++.+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-- 372 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-- 372 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhC--
Confidence 456778889999999999999999999999998763 222 35678899999999999999999999998874
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQS----KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
|+...++..||.+|...+ ..+.|..+..++++. .|....+|..+|.+|... +...++.+|.
T Consensus 373 ------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~-d~~~sL~~~~ 437 (1018)
T KOG2002|consen 373 ------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQT-DPWASLDAYG 437 (1018)
T ss_pred ------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 777777777887777665 556667777777665 566777777777776543 4444477777
Q ss_pred HHHHhhhhcc-cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 444 QVLTRAHERE-FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD--SNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 444 ~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~--~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.|+.+..... .......++.+..+...|.+..|...|..|+..+......+. .......+++|.++...++++.|.+
T Consensus 438 ~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 438 NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 7776554422 223334556666677777777777777777776443333222 1234456777777777777777777
Q ss_pred HHHHHHHHhh
Q psy597 521 LYKQVLTRAH 530 (546)
Q Consensus 521 ~~~~al~~~~ 530 (546)
.|...++..|
T Consensus 518 ~Yk~Ilkehp 527 (1018)
T KOG2002|consen 518 MYKSILKEHP 527 (1018)
T ss_pred HHHHHHHHCc
Confidence 7777777654
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=132.40 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=157.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
..+--++++...+|+.|.-.++.++|+.+|++|+++
T Consensus 324 ~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-------------------------------------------- 359 (559)
T KOG1155|consen 324 NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL-------------------------------------------- 359 (559)
T ss_pred HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------------------------------------------
Confidence 334556778888999999999999999999999994
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
+|....+|..+|.-|..+.+...|+..|+.|+++ .|..-.+|+.||..|.-++.+.=|+-+|++|+...
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--- 428 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--- 428 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---
Confidence 6778889999999999999999999999999998 45668899999999999999999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|.....|..||.||.+.++.++|+.+|.+|+.. ......++..||.+|.+.++..+|..+|++.+..
T Consensus 429 -----PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 429 -----PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred -----CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998 3346678999999999999999999999999986
Q ss_pred h
Q psy597 449 A 449 (546)
Q Consensus 449 ~ 449 (546)
.
T Consensus 496 ~ 496 (559)
T KOG1155|consen 496 S 496 (559)
T ss_pred H
Confidence 4
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-13 Score=148.67 Aligned_cols=308 Identities=13% Similarity=0.069 Sum_probs=185.3
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...++.......+..|....++..+|.++...|++++|+.+|+++++..+... .+.......+........+....
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND----DYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444445677788899999999999999999999999998754432 11111111222222222222222
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
..+. ...|..+. +..+|.++...|++++|+..+++++... |....++..+|.++...|..++|+.
T Consensus 107 ~~~l------~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 107 KQLV------SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHH------HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 2221 13455566 8899999999999999999999999883 4446677778888888888887776
Q ss_pred HHHH---------------------------------------HHHHHHHhc---CCC---ChHHHHHHHH-HHHHHHHc
Q psy597 357 LCKR---------------------------------------ALEIREKVL---GKE---HPDVAKQLNN-LALLCQNQ 390 (546)
Q Consensus 357 ~~~~---------------------------------------al~~~~~~~---~~~---~~~~~~~~~~-la~~~~~~ 390 (546)
.+++ |+...+... ..+ .+....+... ++. +...
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~ 250 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLAR 250 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHh
Confidence 5552 222222221 111 1222333333 443 4577
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhh
Q psy597 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQK 470 (546)
Q Consensus 391 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 470 (546)
|++++|+..|+++++. ++..|..+..+ +|.+|..+|++++|+.+|++++...+............++..+...
T Consensus 251 g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 251 DRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred hhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 9999999999998875 12235554433 6899999999999999999988753322100111223334456778
Q ss_pred chhhHHHHHHHHHHHHHHHH---c--CCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 471 NKAKNREKYYQRALEIYELK---L--GPDDS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 471 ~~~~~A~~~~~~Al~~~~~~---~--~~~~~--~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+++++|...+.++....... . ....| ....++..+|.++...|++++|+..+++++...|.
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88888888877776541000 0 00001 12234445555555555555555555555554443
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-13 Score=130.82 Aligned_cols=290 Identities=15% Similarity=0.113 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
...+..+-..|+-+++.|+|++||.+|.+|+++++...--+.. +..+...+..+.. .......+ ..-.|+
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsN-raAcY~~lgd~~~---Vied~TkA------LEl~P~ 181 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSN-RAACYESLGDWEK---VIEDCTKA------LELNPD 181 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhh-HHHHHHHHhhHHH---HHHHHHHH------hhcCcH
Confidence 4567788999999999999999999999999987764211111 1111111111111 11111111 335688
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHH------------------HHHH-----HHHHhcCC-CCHH-----HHHHHH---
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLN------------------DALT-----IREKTLGE-NHAA-----VAATLN--- 339 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~-----~~~~~~g~-~~~~-----~~~~~~--- 339 (546)
...+++..+.++-..|++++|+.-.. +.+. .....+++ ..|. ...+|+
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 88889999999999999888874322 1111 11111221 1111 111111
Q ss_pred -------------------HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCC-------------------------
Q psy597 340 -------------------NLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKE------------------------- 372 (546)
Q Consensus 340 -------------------~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~------------------------- 372 (546)
.-+.-+...+ .|.+|...+.+...........+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0111111122 46666666665544332221111
Q ss_pred --------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 373 --------------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 373 --------------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
+|.....|..+|.+|....+.++....|.+|.++ +|.++.+|+..|.+++-++++++|
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHH
Confidence 1222223455555555555555555555555555 666677777777777777777777
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
+.-|++++.+.|++. .+....+....+.+++.++...|+.+..- -|..++++...|.++..+++|++|
T Consensus 414 ~aDF~Kai~L~pe~~----~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 414 IADFQKAISLDPENA----YAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHhhcChhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHH
Confidence 777777777765543 23344455566666777777777777765 466677777888888888888888
Q ss_pred HHHHHHHHHHhhh
Q psy597 519 EILYKQVLTRAHE 531 (546)
Q Consensus 519 ~~~~~~al~~~~~ 531 (546)
.+.|+.|+.+-|.
T Consensus 482 ~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 482 VKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHhhccc
Confidence 8888888887765
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=130.73 Aligned_cols=272 Identities=21% Similarity=0.172 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhh---hhhHHHHHHHHHHHHhccCCCC
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSR---KESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
|-....-.+.+..|.++|+++.|++.++ .+.+.......|.....+++... .+..++...+..+ ...
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilk----v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a------ln~ 485 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILK----VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA------LNI 485 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHH----HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH------hcc
Confidence 3444555677788999999999998763 34444444444444333333322 2222222222222 223
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
+...+.++.+.|.+-+..|++++|.+.|.+++.- +.....+++++|..+..+|+.++|+.+|-+.-.+.
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il--- 554 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--- 554 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---
Confidence 4556778888999999999999999999999854 56668999999999999999999999999988886
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
...+.++..++.+|..+.+..+|++++-++..+ .|..+.++..||.+|-..|+...|..++-.....
T Consensus 555 -----~nn~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 555 -----LNNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred -----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 567889999999999999999999999999888 6777888999999999999999999988777665
Q ss_pred hhhcccCcccCCChhhHH---HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
+|.+ ....-|. |....-.+.++.+|++|.-+ .|....-...++.|+.+.|+|.+|...|+..
T Consensus 622 fp~n-------ie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 622 FPCN-------IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred cCcc-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4422 1122233 44555567778888887655 6777777788999999999999999999999
Q ss_pred HHHhhhh
Q psy597 526 LTRAHER 532 (546)
Q Consensus 526 l~~~~~~ 532 (546)
-+.+|++
T Consensus 687 hrkfped 693 (840)
T KOG2003|consen 687 HRKFPED 693 (840)
T ss_pred HHhCccc
Confidence 8888765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=129.50 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=152.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.+..+..++.+|..++..|+|++|+..|++++.. .++++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----------------------------------------~p~~~ 67 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----------------------------------------YPFSP 67 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------------------CCCch
Confidence 3556789999999999999999999999999885 33556
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR--------GKYKEAEPLCKRAL 362 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al 362 (546)
....+++.+|.++...|++++|+..|++++... ++++....+++.+|.++... |++++|+..|++++
T Consensus 68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 667789999999999999999999999999886 44566667899999999886 88999999999999
Q ss_pred HHHHHhcCCCChHHHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQ--------------LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
... ++++....+ ...+|.++...|++.+|+..|+++++.+ ++.|....++..+|.+
T Consensus 143 ~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 143 RRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEA 212 (235)
T ss_pred HHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHH
Confidence 875 333322222 2467899999999999999999999873 4467788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q psy597 429 YLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 429 y~~~g~~~eA~~~~~~al~~ 448 (546)
|...|++++|..+++.....
T Consensus 213 ~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 99999999999988877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=132.98 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=161.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
+.+..+..++.+|.+|...|++++|+..|+++++. .
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------------------------------------------~ 94 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------------------------------------------R 94 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------------------------------------------C
Confidence 33456899999999999999999999999999983 5
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|..+.+++.+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++...
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---- 162 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---- 162 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 667889999999999999999999999999988 45557789999999999999999999999999884
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT-- 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~-- 447 (546)
++++. ...+ ..+....+++++|+..|.+++.. . ++.. + ..+.++...|++..+ ..+..+..
T Consensus 163 -P~~~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~------~-~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~ 225 (296)
T PRK11189 163 -PNDPY-RALW---LYLAESKLDPKQAKENLKQRYEK------L-DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGA 225 (296)
T ss_pred -CCCHH-HHHH---HHHHHccCCHHHHHHHHHHHHhh------C-Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcC
Confidence 33331 1111 22345678999999999887643 1 2211 1 134555567776544 23333332
Q ss_pred -hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 448 -RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 448 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
..++........+...+..+...|++++|..+|++|+.. +.++.....+.+..+....+.
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~-------~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN-------NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHHhh
Confidence 111111112234666777888999999999999999976 124566666655555554433
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=140.27 Aligned_cols=237 Identities=16% Similarity=0.189 Sum_probs=168.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
+..|..+++.|+..+|+-.|+.|+. .+|..+.+|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk--------------------------------------------qdP~haeAW~~ 324 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK--------------------------------------------QDPQHAEAWQK 324 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh--------------------------------------------hChHHHHHHHH
Confidence 5578899999999999999999988 67999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
||.+....++-..|+..+++++++ +|....++..||..|...|.-.+|..++.+-+... |....
T Consensus 325 LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--------p~y~~ 388 (579)
T KOG1125|consen 325 LGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--------PKYVH 388 (579)
T ss_pred hhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--------ccchh
Confidence 999999999999999999999998 67778999999999999999999999999987653 11110
Q ss_pred HHHH----H---HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 379 QLNN----L---ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 379 ~~~~----l---a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.-.. . ..-......+..-.++|-.+... . + ....+++...||.+|...|+|++|+.+|+.||..-|.
T Consensus 389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~---~--~-~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn 462 (579)
T KOG1125|consen 389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ---L--P-TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN 462 (579)
T ss_pred ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh---C--C-CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc
Confidence 0000 0 00000001122223333333332 1 1 1134455666777777777777777777777765443
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+. ..++.+|-.+....+..+|+..|.+|+++ .|...++.++||..|..+|.|++|.++|-.|+.+.+.
T Consensus 463 d~----~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 463 DY----LLWNRLGATLANGNRSEEAISAYNRALQL--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hH----HHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 32 23444444455556666777777777766 7888889999999999999999999999999988766
Q ss_pred hc
Q psy597 532 RE 533 (546)
Q Consensus 532 ~~ 533 (546)
..
T Consensus 531 s~ 532 (579)
T KOG1125|consen 531 SR 532 (579)
T ss_pred cc
Confidence 43
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=128.47 Aligned_cols=199 Identities=19% Similarity=0.139 Sum_probs=144.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++.+|..+...|++++|+..|++++... ++++....+++.+|.++...|++++|+..|+++++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-- 100 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-- 100 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence 456678899999999999999999999999998875 4566677889999999999999999999999999886
Q ss_pred hcCCCChHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQ--------SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
++++....+++.+|.++... |++++|+..|++++... |+++....++..++..+...+..
T Consensus 101 ---p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~---- 168 (235)
T TIGR03302 101 ---PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGK---- 168 (235)
T ss_pred ---cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHH----
Confidence 45566667899999999876 88999999999999872 22332333332222211100000
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
....+..+...|++..|...|.+++..+ ++.|....++..+|.+|...|++++|.
T Consensus 169 --------------------~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 169 --------------------ELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred --------------------HHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 0012223444455555555555554442 335667889999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy597 520 ILYKQVLTRAH 530 (546)
Q Consensus 520 ~~~~~al~~~~ 530 (546)
.+++.....+|
T Consensus 224 ~~~~~l~~~~~ 234 (235)
T TIGR03302 224 DAAAVLGANYP 234 (235)
T ss_pred HHHHHHHhhCC
Confidence 99988776553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-12 Score=116.61 Aligned_cols=262 Identities=18% Similarity=0.186 Sum_probs=203.6
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
|.-++..+......+|...++...+|..|.+.|..+.|+..-+..++
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--------------------------------- 97 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--------------------------------- 97 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---------------------------------
Confidence 44455566666778899999999999999999999999998876665
Q ss_pred HHHHHhccCCCC--ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 277 KVAQILGSGGHD--HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 277 ~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
.++ ......++..||.=|+..|=++.|...|....+. ......++..|-.+|....+|++|
T Consensus 98 ---------spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KA 160 (389)
T COG2956 98 ---------SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKA 160 (389)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHH
Confidence 222 2345677889999999999999999999988764 233466888999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
++..++...+..+ +.....+..|..||..+....+.+.|+..+.+|++. +|....+-..+|.++...|+
T Consensus 161 Id~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 161 IDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccc
Confidence 9999988877422 223567888999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
|+.|++.++.+++..++-- ......+..+|...|+..+....+.++.+.+ + ...+...++.+-....-
T Consensus 230 y~~AV~~~e~v~eQn~~yl---~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--------~-g~~~~l~l~~lie~~~G 297 (389)
T COG2956 230 YQKAVEALERVLEQNPEYL---SEVLEMLYECYAQLGKPAEGLNFLRRAMETN--------T-GADAELMLADLIELQEG 297 (389)
T ss_pred hHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--------C-CccHHHHHHHHHHHhhC
Confidence 9999999999988644311 0122234455888888888888888887652 1 12344556666666666
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy597 515 YKEAEILYKQVLTRAHE 531 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~ 531 (546)
.+.|..++.+-+...|.
T Consensus 298 ~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 298 IDAAQAYLTRQLRRKPT 314 (389)
T ss_pred hHHHHHHHHHHHhhCCc
Confidence 77888888777776554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=139.34 Aligned_cols=276 Identities=14% Similarity=0.054 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.......+|.++...|++++|..++++++...+ ..+.....
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------~~~~~~~~ 491 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---------------------------------------LTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------------------------CccHHHHH
Confidence 445556688889999999999999999987421 11222345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+|.++...|++++|...+.+++...... .+......++.++|.++...|++++|..++.+++.......+...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 567889999999999999999999999988765 344445668899999999999999999999999999877644444
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+.....+..+|.++...|++++|...+.+++.+..... ......++..+|.++...|++++|...+.++..+.....
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~ 646 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR 646 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 54556677899999999999999999999999876431 234566788899999999999999999999877543221
Q ss_pred cCc-----------------------------------ccC------CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 454 FGA-----------------------------------CDG------DNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 454 ~~~-----------------------------------~~~------~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
... ... ....+..+...|++.+|...+.+++.......
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g- 725 (903)
T PRK04841 647 YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR- 725 (903)
T ss_pred ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-
Confidence 000 000 01223346677899999999999998765442
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccC
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 535 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 535 (546)
.......++..+|.++...|++++|..++.+|++++...++.
T Consensus 726 -~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 726 -LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred -chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 245677888999999999999999999999999999776654
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-12 Score=116.93 Aligned_cols=298 Identities=16% Similarity=0.119 Sum_probs=221.2
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhh
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRS 265 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~ 265 (546)
.++.+.-.+...+|.+..+++..|.+|...|+-.-|+.-+.+++++-+... |.++.|..-+...+..
T Consensus 56 DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 56 DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 355555556667788888888888888888888888888888877643322 4555555555555543
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy597 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY 345 (546)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~ 345 (546)
.+............ ......+.+......+...|++..|+++....+++ .|+.+..+...+.+|
T Consensus 136 ~~s~~~~~eaqskl--------~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 136 EPSNGLVLEAQSKL--------ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCY 199 (504)
T ss_pred CCCcchhHHHHHHH--------HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHH
Confidence 33211111111000 01122334455556677789999999999999988 578888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425 (546)
Q Consensus 346 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~L 425 (546)
...|+...|+.-++.+-.+. .+....++.++.+++..|+.+.++...++++++ .|++......|-.+
T Consensus 200 i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKL 266 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHH
Confidence 99999999999999988874 566788999999999999999999999999998 12222222222222
Q ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH
Q psy597 426 ---------ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496 (546)
Q Consensus 426 ---------a~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 496 (546)
+.-....++|.++++..++.++..|+.....+.....+..++...+++.+|+....+++.+ .|
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~ 338 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DP 338 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------Cc
Confidence 3344567889999999999998877655556666666777788999999999999999987 88
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 497 ~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
..+.++...+.+|.....|+.|+.-|++|.+..+.+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 9999999999999999999999999999999876553
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-12 Score=119.65 Aligned_cols=286 Identities=13% Similarity=0.045 Sum_probs=206.8
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy597 201 FAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQ 280 (546)
Q Consensus 201 ~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 280 (546)
.....+.....|.+...+..+|.+++..|++++|+..|+++.-+-+... .+...+...+..-....+.........
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 3344455566789999999999999999999999999999876533322 222222222222222211111111110
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
......+.-|+.-+...+...++..|+.+-+++++. .+....++...|.++...|+.++|+-.|+.
T Consensus 294 ------~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 294 ------AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred ------hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 011233445667778888889999999999999877 445577888999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHHHH-cCCHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA-SCYLK-QGKYKEA 438 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La-~~y~~-~g~~~eA 438 (546)
|..+. |....+|..|-.+|...|++.+|....+.++.. -+..+.++..+| .++.. ----++|
T Consensus 360 Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--------~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 360 AQMLA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--------FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred HHhcc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------hhcchhhhhhhcceeeccCchhHHHH
Confidence 99885 888999999999999999999999999998887 566677777775 44433 2334789
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
..++++++++.|.- .......+..+...|....++..+++++..+ + ....+..||.++...+.+.+|
T Consensus 424 Kkf~ek~L~~~P~Y----~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~-D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 424 KKFAEKSLKINPIY----TPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------P-DVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred HHHHHhhhccCCcc----HHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------c-ccHHHHHHHHHHHHhhhHHHH
Confidence 99999998874321 1122233444677789999999999998763 2 245778999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy597 519 EILYKQVLTRAHERE 533 (546)
Q Consensus 519 ~~~~~~al~~~~~~~ 533 (546)
..+|..|+++.|.+.
T Consensus 491 m~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHhcCccch
Confidence 999999999988763
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=132.70 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=154.8
Q ss_pred CCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHH
Q psy597 195 PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274 (546)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 274 (546)
+..+.+...+..+...+|.++++|..||.+....++-..|+..++++++
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~------------------------------- 347 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE------------------------------- 347 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-------------------------------
Confidence 3466777888888999999999999999999999999999999999998
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-----------cCC----C---------
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKT-----------LGE----N--------- 330 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~g~----~--------- 330 (546)
-+|....++..||..|...|.-.+|..++.+-+....+. .+. .
T Consensus 348 -------------LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~ 414 (579)
T KOG1125|consen 348 -------------LDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQ 414 (579)
T ss_pred -------------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHH
Confidence 467778888899999998888888888888776543110 000 0
Q ss_pred ---------CH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 331 ---------HA--AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERY 399 (546)
Q Consensus 331 ---------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 399 (546)
.| ..+++...||.+|...|+|++|+++|+.||.. .|.....|+.||-.+..-.+.++|+..
T Consensus 415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 415 ELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 01 22456677788888888888888888888876 377788888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 400 ~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|.+|+++ .|...++++|||.+|..+|.|++|.++|-.+|.+.+.
T Consensus 487 Y~rALqL--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 487 YNRALQL--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhc--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 8888887 7778888888888888888888888888888876544
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=119.60 Aligned_cols=190 Identities=18% Similarity=0.159 Sum_probs=159.6
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
|..++....+.....|.++..+..++.++...+++++|..+|+.+++
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--------------------------------- 318 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--------------------------------- 318 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh---------------------------------
Confidence 34455666666777888899999999999999999999999999887
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
.++....+.-.+|.-|+..++.+-|+.+|++.+.+- ...+..+.++|.|++..++++-++.
T Consensus 319 -----------~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--------~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 319 -----------LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--------AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred -----------cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc--------CCChHHHhhHHHHHHhhcchhhhHH
Confidence 356666667777888888999999999999999883 2336678999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
.|++|+... .++...+.+|+|+|.+....|++.-|.++|+-++.. +++...+++|||.+-.+.|+.+
T Consensus 380 sf~RAlsta-----t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 380 SFQRALSTA-----TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHHHHHhhc-----cCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchH
Confidence 999999886 334667889999999999999999999999988876 8888999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy597 437 EAEILYKQVLTRAHE 451 (546)
Q Consensus 437 eA~~~~~~al~~~~~ 451 (546)
+|..++..+-...|.
T Consensus 447 ~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 447 GARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHHHHhhhhCcc
Confidence 999999988877664
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-12 Score=126.91 Aligned_cols=213 Identities=16% Similarity=0.083 Sum_probs=163.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
+|+.+.++..+|..+...|+++.+...+.++....+ ...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~ 40 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----------------------------------------ARA 40 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----------------------------------------cCC
Confidence 588889999999999999999999888888776533 223
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.........|.++...|++++|...+++++... |....++.. +..+...|++..+.....+++.. ..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~ 107 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY--------PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WA 107 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cC
Confidence 445557778999999999999999999999873 222344444 66666666666666666665543 23
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+.+|.....+..+|.++...|++++|+..+++++++ .|....++..+|.+|...|++++|+.++++++...+
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 557888888999999999999999999999999998 677788899999999999999999999999998765
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 485 (546)
.............+..+...|++++|...|++++.
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 42211111222455557788888888888888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=108.48 Aligned_cols=315 Identities=15% Similarity=0.075 Sum_probs=221.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhH--HHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEA--AETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
...+...+-.+..+....|.|++++.+.-..+..+....+..-. |..-...+.....+........+.-..+....+
T Consensus 39 ~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~- 117 (518)
T KOG1941|consen 39 LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRA- 117 (518)
T ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc-
Confidence 34566677777788888888888887766666655444322222 222222222333333333333332222221111
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
...-..+...+|.++...+.+++++++|++|+.+...+ .|......++..||.+|....++++|.-+..+|.++....
T Consensus 118 ~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 118 GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 12334667779999999999999999999999998776 5555567889999999999999999999999999998765
Q ss_pred cCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 369 LGKE--HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 369 ~~~~--~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
.-++ ......+++.++..+..+|....|.++.+++.++.-.. +|.+..+.+...+|.+|...|+.+.|..-|+++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3222 23456788999999999999999999999999997766 7788999999999999999999999999999999
Q ss_pred Hhhhhcc--cCcccCCChhhHHHHhh-----chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 447 TRAHERE--FGACDGDNKPIWQDRQK-----NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 447 ~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
.....-+ .+.+......+...... +..-.|++.-.+.+++...+.. .......+..++.+|..+|.-++=.
T Consensus 274 ~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~--K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 274 GTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA--KLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhccchhHHH
Confidence 8765422 22222222222222111 1223477777788877766633 4556778889999999999988888
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..+.++-+...+-
T Consensus 352 ~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 352 AHVVRAHECVEET 364 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 8887776655443
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-11 Score=122.99 Aligned_cols=264 Identities=19% Similarity=0.125 Sum_probs=202.7
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQIL 282 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 282 (546)
.+.....-+|.++.+.+.++..|..+++.+.|..+.++++++
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------------------------------------- 507 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------------------------------------- 507 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------------------------------
Confidence 344455556777799999999999999999999999999985
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 283 GSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 283 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
+..+.+.+|..++.++...+++.+|+...+.+++-+...++ .......+-...++.++|+..+...+
T Consensus 508 -----~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--------l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 508 -----NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--------LMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred -----cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--------hchhhhhhhhhcccHHHHHHHHHHHH
Confidence 34556778888999999999999999999888887644211 11112222223444444444444444
Q ss_pred HHHHHhc-----------------------------------------------------------CCCCh--HHHHHHH
Q psy597 363 EIREKVL-----------------------------------------------------------GKEHP--DVAKQLN 381 (546)
Q Consensus 363 ~~~~~~~-----------------------------------------------------------~~~~~--~~~~~~~ 381 (546)
...+..+ +++++ .....|.
T Consensus 575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence 4433110 01111 1223456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCC
Q psy597 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN 461 (546)
Q Consensus 382 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 461 (546)
..|..+...++.++|..++.++-.+ .|..+..|+..|.++...|++.+|...|..++.+.|++. ....
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv----~s~~ 722 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV----PSMT 722 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc----HHHH
Confidence 7788888999999999999999998 889999999999999999999999999999999877653 3455
Q ss_pred hhhHHHHhhchhhHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccCCC
Q psy597 462 KPIWQDRQKNKAKNREK--YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 537 (546)
Q Consensus 462 ~~~~~~~~~~~~~~A~~--~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 537 (546)
..+.++...|+..-|.. .+..|+++ +|....+|+.+|.++..+|+.++|.++|..|+++.+.+|.-+.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 66777888898888877 89999988 8999999999999999999999999999999999888776654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=119.05 Aligned_cols=155 Identities=26% Similarity=0.365 Sum_probs=129.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+....+..+...|..|...|++++|...|.++.....+. ++....+..+...+.+|... ++++|+.+|+++++++..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 344567888899999999999999999999999999885 66677788888888888666 999999999999999977
Q ss_pred hcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
. ++....+.++..+|.+|... |++++|+.+|++|+++++.. +.......++..+|.++...|+|++|+..|+++.
T Consensus 107 ~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 107 A--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp C--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred c--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6 55566788999999999999 99999999999999999876 3345567888999999999999999999999988
Q ss_pred Hhh
Q psy597 447 TRA 449 (546)
Q Consensus 447 ~~~ 449 (546)
...
T Consensus 183 ~~~ 185 (282)
T PF14938_consen 183 KKC 185 (282)
T ss_dssp HTC
T ss_pred HHh
Confidence 754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-11 Score=124.73 Aligned_cols=283 Identities=10% Similarity=-0.017 Sum_probs=167.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|.....+...|.++..+|+++.|..++.++.+..+...-. .............+...+....... ....
T Consensus 113 ~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~---~~~~~a~l~l~~~~~~~Al~~l~~l------~~~~ 183 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL---VEIARTRILLAQNELHAARHGVDKL------LEMA 183 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH---HHHHHHHHHHHCCCHHHHHHHHHHH------HHhC
Confidence 345555667788999999999999999999987643322100 0000001111111111111111111 1123
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
|..+.++..++.++...|++++|...+.+..+.. ..++. ..........-+...+..+++...+.++....
T Consensus 184 P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--- 255 (409)
T TIGR00540 184 PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--- 255 (409)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC---
Confidence 4455666677777777777777777766666541 11222 22222222222233344444444555554432
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT--KNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~--~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
+...+.....+..+|..+...|++++|...++++++. .|+.... ...........++.+.++..+++++
T Consensus 256 -p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 256 -PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred -CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 0011136778888888889999999999999998886 3333321 1223333344577888888888888
Q ss_pred HhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQR--ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~ 524 (546)
+..|.+.. +......+|.+...|++.+|..+|++ +++. .|.... +..+|.++...|+.++|.++|++
T Consensus 327 k~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 327 KNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKE--------QLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 76554431 13344678888899999999999885 4443 454443 55899999999999999999999
Q ss_pred HHHHh
Q psy597 525 VLTRA 529 (546)
Q Consensus 525 al~~~ 529 (546)
++...
T Consensus 396 ~l~~~ 400 (409)
T TIGR00540 396 SLGLM 400 (409)
T ss_pred HHHHH
Confidence 87765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-11 Score=121.90 Aligned_cols=299 Identities=15% Similarity=0.083 Sum_probs=193.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhh--HHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 207 AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETL--EDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 207 ~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
.....+...+..+..+..+...|++++|...++++++..|... .+... .............. ....+..
T Consensus 35 ~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~~~~~~~~~~~~~~~~~-----~~~~l~~ 105 (355)
T cd05804 35 ALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL----LALKLHLGAFGLGDFSGMRDH-----VARVLPL 105 (355)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHhHHHHHhcccccCchh-----HHHHHhc
Confidence 3344445566777889999999999999999999998755432 11111 00001111111111 1111111
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
..+.+|....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|++++|+.++.+++..
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 35577888888999999999999999999999999987 3444678899999999999999999999999987
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH--HHHHHHHHHHcCCHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT--KNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~--~~~La~~y~~~g~~~eA~~~~ 442 (546)
... +.......+..+|.++...|++++|+..|++++... +..+..... ...+...+...|....+..+
T Consensus 178 ~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w- 247 (355)
T cd05804 178 WDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW- 247 (355)
T ss_pred cCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-
Confidence 521 112334567789999999999999999999986541 111122211 11233344455554444433
Q ss_pred HHHHHhhhhcccCcccC--CChhhHHHHhhchhhHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 443 KQVLTRAHEREFGACDG--DNKPIWQDRQKNKAKNREKYYQRALEIYELKL-GPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 443 ~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
+.+.............. .....+.....|+...|...+........... ..............+.++...|++++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 22222211110111111 12344557778888888888888776654310 0112345667778899999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..+..++......
T Consensus 328 ~~L~~al~~a~~~ 340 (355)
T cd05804 328 ELLGPVRDDLARI 340 (355)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-11 Score=118.43 Aligned_cols=225 Identities=17% Similarity=0.094 Sum_probs=111.6
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------hcCchhHHHhhHHHHHhhhhhh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-------------TSGKYEAAETLEDCALRSRKES 269 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~a~~~~~~~l~~~~~~ 269 (546)
.....+.+..+.-.+|..-+..+...+-++-|...|..+++.++. ..|..+....++..+....+..
T Consensus 504 avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka 583 (913)
T KOG0495|consen 504 AVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA 583 (913)
T ss_pred HHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc
Confidence 334456666777778888888888888888888888888776433 3344555555555544444333
Q ss_pred HHHHHHHHHH-----------HHhccCCCCChhHHHHHH---------------------------------HHHHHHHH
Q psy597 270 YDIVKQAKVA-----------QILGSGGHDHPDVATMLN---------------------------------ILALVYRD 305 (546)
Q Consensus 270 ~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~---------------------------------~la~~~~~ 305 (546)
......+... .++......+|..-.+|. .-+.+.+.
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY 663 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence 3222111100 011111112222333333 33344444
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
+++.++|+.++++++..+ |.....|..+|.++..+++.+.|...|...+..+ |.....|..|+.
T Consensus 664 ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--------P~~ipLWllLak 727 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--------PNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--------CCCchHHHHHHH
Confidence 444444444444444442 2233444444444444444444444444444443 444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+-...|....|...++++.-. +|.....|.....+-++.|+.+.|.....++++.+|.
T Consensus 728 leEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 444444444444444444433 4444555555555555555555555555555555443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-12 Score=119.07 Aligned_cols=223 Identities=15% Similarity=0.049 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
.-++.++.+.|.+.+..|++++|...|++++. ++..
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------------------------------------------ndas 522 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------------------------------------------NDAS 522 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------------------------------------------CchH
Confidence 34455666666777777777777777777765 6677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+++++|..+..+|+.++|+.+|-+.-.+.... +.++..++.+|..+.+..+|++++-++..+.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il~nn--------~evl~qianiye~led~aqaie~~~q~~sli------ 588 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------AEVLVQIANIYELLEDPAQAIELLMQANSLI------ 588 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC------
Confidence 88999999999999999999999999988876443 8889999999999999999999999998885
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|..+.++..||.+|-+.|+-.+|..++-..... .|....+.-.||..|....-+++|+.+|+++--+.|.
T Consensus 589 --p~dp~ilskl~dlydqegdksqafq~~ydsyry--------fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 589 --PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred --CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 777888999999999999999999999888777 6778888889999999999999999999998765433
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
.. ......+.+++..|++..|...|...-.. -|....++..|.++...+|-
T Consensus 659 ~~----kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QS----KWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HH----HHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccc
Confidence 11 11122344577788888887777765544 47778888888888877764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.7e-11 Score=113.98 Aligned_cols=221 Identities=13% Similarity=0.074 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|....++..+-.++...+++++|+..+.+++.+ .|.
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------------------------------------------nP~ 69 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL--------------------------------------------NPG 69 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------------------------------------------Cch
Confidence 566677777777788899999999999999984 677
Q ss_pred HHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHh
Q psy597 292 VATMLNILALVYRDQN-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY--KEAEPLCKRALEIREKV 368 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~ 368 (546)
...+|...+.++...| ++.+++..+++++.. .|....+|+..+.++...|+. ++++.++.++++.
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---- 137 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---- 137 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----
Confidence 7889999999999998 689999999999987 455577899999999999874 7889999999988
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---CCH----HHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ---GKY----KEAEIL 441 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~---g~~----~eA~~~ 441 (546)
+|....+|...+.++...|++++|+.++.++++. ++....+|+..+.+.... |.+ ++++.+
T Consensus 138 ----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 138 ----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred ----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5888999999999999999999999999999999 888899999999988776 333 478888
Q ss_pred HHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 442 YKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 442 ~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
..+++...|.+. .+....+.++.. .+...++...+.+++.. .+....++..|+.+|...
T Consensus 206 ~~~aI~~~P~N~----SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNE----SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCc----CHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--------cCCcHHHHHHHHHHHHhh
Confidence 889998866543 223334444433 12334455555555442 566778889999999863
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.4e-11 Score=121.71 Aligned_cols=294 Identities=17% Similarity=0.154 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+...|...+..|++++|.+++.++++..+...-. ...+.......++..........+.. ..|.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~a----y~tL~~IyEqrGd~eK~l~~~llAAH------L~p~ 205 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIA----YYTLGEIYEQRGDIEKALNFWLLAAH------LNPK 205 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhh----HHHHHHHHHHcccHHHHHHHHHHHHh------cCCC
Confidence 4557888999999999999999999999999865544321 11222222222222222222222221 2333
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
....|..++.....+|++..|.-+|.+|++. .|......+..+.+|.++|++..|...|.+++.... +
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~ 273 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----P 273 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----c
Confidence 3356677777777777777777777777766 344455666677777777777777777777776641 0
Q ss_pred CChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 372 EHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 372 ~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.+.. .-..-...+..+...++-+.|+..++.++.. ..+......++.++.++++...++.|............
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSK------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 0001 1222233355666666666677777666663 22334445566777778888888877776655444100
Q ss_pred hc----------------------ccCcccCCC-hh--hHHHHhh-------------c------------hhhHH---H
Q psy597 451 ER----------------------EFGACDGDN-KP--IWQDRQK-------------N------------KAKNR---E 477 (546)
Q Consensus 451 ~~----------------------~~~~~~~~~-~~--~~~~~~~-------------~------------~~~~A---~ 477 (546)
++ ....+.... .. +...... . +..+| .
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 00 000000000 00 0000000 0 01111 2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 478 KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 478 ~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
+.|..|+..+.............+|..+|.||..+|.+++|+.+|++++...|++.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 23455555555555444445577999999999999999999999999999887653
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-11 Score=110.53 Aligned_cols=210 Identities=20% Similarity=0.177 Sum_probs=172.5
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
...+|.++.-.+.+|..++..|++..|+..|..|++
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve-------------------------------------------- 66 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVE-------------------------------------------- 66 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--------------------------------------------
Confidence 345688999999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+|....+++..|.+|..+|+-.-|+.-+.+++++ .|....+....|.++.++|.+++|+.-|..++...
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-- 136 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-- 136 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--
Confidence 56888889999999999999999999999999988 67788899999999999999999999999998763
Q ss_pred hcCCCChHHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 368 VLGKEHPDVA------------KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 368 ~~~~~~~~~~------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
++..... +.+......+...|++..|+.+....+++ .|..+..+...+.||...|+.
T Consensus 137 ---~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 137 ---PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred ---CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcH
Confidence 1111111 22333344556789999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
..|+.-++.+-++..++. .....+...++..|+...++...++.+++
T Consensus 206 k~AI~Dlk~askLs~DnT----e~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQDNT----EGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHHhccccch----HHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 999999998887643322 23344555567777777777777777765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-11 Score=120.91 Aligned_cols=204 Identities=11% Similarity=0.121 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
...+.+....|+++.|..+|.++.+.. + ++. .......+.++...|++++|...+++..+.. |..
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~~-----~-~~~-~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--------P~~ 186 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAELA-----D-NDQ-LPVEITRVRIQLARNENHAARHGVDKLLEVA--------PRH 186 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-----C-cch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCC
Confidence 333555577788888888888877652 1 111 1122234777888888888888888877763 666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHH---------------hcCCCChHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEI-------------------YEL---------------KLGPDDSNVAKTK 422 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------------------~~~---------------~~~~~~~~~~~~~ 422 (546)
..++..++.+|...|++++|+..+.+..+. ... ..+...+..+.+.
T Consensus 187 ~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~ 266 (398)
T PRK10747 187 PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ 266 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH
Confidence 677777788888888888887665544421 000 0111133456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 502 (546)
..+|..+...|+.++|...++++++..+... ..........++...+...+++.++. +|+.+..+
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~-------l~~l~~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~ 331 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKRQYDER-------LVLLIPRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLW 331 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-------HHHHHhhccCCChHHHHHHHHHHHhh--------CCCCHHHH
Confidence 8889999999999999999999988432211 00111112224444444444433332 34444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 503 NNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 503 ~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
..+|.++...|++++|..+|+++++..|
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4555555555555555555555554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.4e-11 Score=110.30 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=135.7
Q ss_pred hHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy597 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSI 151 (546)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l 151 (546)
.||.+..+ ..+++..|.+.|+.++.|+.+||+||+++..+. ..++++....+..+... ... +
T Consensus 44 ~le~~~~~--~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l-------~~~~~rq~~~y~dld~r---~~~------~ 105 (263)
T PRK10803 44 QLERISNA--HSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQL-------NQVVERQKQIYLQIDSL---SSG------G 105 (263)
T ss_pred HHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHH---Hhc------c
Confidence 44544443 247888999999999999999999998877666 44455555555544432 111 0
Q ss_pred hhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChhhHHHhhhcCCCchHHHHHHHHHHHHH-HHcCC
Q psy597 152 RKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQY-ASQGR 230 (546)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~-~~~g~ 230 (546)
..... +.... . . .....-++..... ..+. .+..+......+..|..+ ...|+
T Consensus 106 ~~~~~---~~~~~----~-~-----~~~~~~~~~~~~~---~~~~-----------~~~~~~~e~~~Y~~A~~l~~~~~~ 158 (263)
T PRK10803 106 AAAQS---TSGDQ----S-G-----AAASATPAADAGT---ANAG-----------APVQSGDANTDYNAAIALVQDKSR 158 (263)
T ss_pred ccCCc---ccccc----c-c-----CCCccccccCccc---cccc-----------CCCCCCCHHHHHHHHHHHHHhcCC
Confidence 00000 00000 0 0 0000000000000 0000 011122345667777765 66799
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHH
Q psy597 231 YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310 (546)
Q Consensus 231 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (546)
|++|+..|+..++.+| +.+..+.+++++|.+|+..|+++
T Consensus 159 y~~Ai~af~~fl~~yP-----------------------------------------~s~~a~~A~y~LG~~y~~~g~~~ 197 (263)
T PRK10803 159 QDDAIVAFQNFVKKYP-----------------------------------------DSTYQPNANYWLGQLNYNKGKKD 197 (263)
T ss_pred HHHHHHHHHHHHHHCc-----------------------------------------CCcchHHHHHHHHHHHHHcCCHH
Confidence 9999999999998633 55666788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+|+..|.+++..+ ++++....+++.+|.++...|++++|..+|+++++.+
T Consensus 198 ~A~~~f~~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 198 DAAYYFASVVKNY-----PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHC-----CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999887 6678899999999999999999999999999999886
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-11 Score=110.35 Aligned_cols=265 Identities=14% Similarity=0.105 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.....|..++...++++|+..+.+.+..... .......+
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-----------------------------------------~~~Rf~~l 46 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSD-----------------------------------------LMGRFRVL 46 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHH-----------------------------------------HHHHHHHh
Confidence 3455677888999999999999998875433 23344556
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
-.+..+...+|.|++++.+--..++.+... .+......++.+++..+....++.+++.+....+.+--...+ ..-
T Consensus 47 G~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~ 121 (518)
T KOG1941|consen 47 GCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLG 121 (518)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---ccc
Confidence 677788889999999988887777777666 667777899999999999999999999999888776211100 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
..+...+|..+..++.+++++++|++|+.+.... .|......++..||.+|....++++|..+..++.++...-..+.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 4566779999999999999999999999997665 44445667889999999999999999999999999877655443
Q ss_pred ccC------CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 457 CDG------DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 457 ~~~------~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+.. ...+...++..|....|.++.++|.++.-.. ++.+..+.....+|.+|...|+.+.|..-|+.|+....
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 332 2334445788899999999999999887655 56788999999999999999999999999999998765
Q ss_pred h
Q psy597 531 E 531 (546)
Q Consensus 531 ~ 531 (546)
.
T Consensus 278 ~ 278 (518)
T KOG1941|consen 278 S 278 (518)
T ss_pred h
Confidence 4
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=116.68 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=154.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
..-+..+...|.+|...|+|++|...|.++.+...+.. +...
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--------------------------------------~~~~ 73 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--------------------------------------DKFE 73 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--------------------------------------CHHH
Confidence 45567888999999999999999999999999877644 4566
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+..+...+.+|... ++++|+.+|++|+.++... ++....+.++..+|.+|... |++++|+.+|++|+++++..
T Consensus 74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-- 148 (282)
T PF14938_consen 74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-- 148 (282)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--
Confidence 677788878887666 9999999999999999887 66777889999999999999 99999999999999999876
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+.......++..+|.++...|+|++|+..|++....+.... .........+...+.|++..|++..|...+++.....|
T Consensus 149 ~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33455677889999999999999999999999887532220 01233445667888999999999999999988876644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=117.70 Aligned_cols=237 Identities=11% Similarity=0.019 Sum_probs=160.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+...+......|+++.|..+|.++.+..+. .. .....
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------------------------------------------~~-~~~~l 157 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADN------------------------------------------DQ-LPVEI 157 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------------------------------------------ch-HHHHH
Confidence 334455668999999999999998763111 11 11122
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------ 365 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------ 365 (546)
..+.++...|+++.|...+++..+. .|....++..++.+|...|++++|+..+.+..+..
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ 229 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2356666666666666666666554 23334555556666666666666664444433210
Q ss_pred -------H---------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 366 -------E---------------KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 366 -------~---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
. +......|..+.+...+|..+...|+.++|...++++++. +.++.....
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l-- 301 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL-- 301 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH--
Confidence 0 0000112445667788999999999999999999999885 334432222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
.+. ...+++++++..+++.++..|++. ......+..+...+++..|..+|++++.. .|... .+.
T Consensus 302 -~~~--l~~~~~~~al~~~e~~lk~~P~~~----~l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~-~~~ 365 (398)
T PRK10747 302 -IPR--LKTNNPEQLEKVLRQQIKQHGDTP----LLWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDAY-DYA 365 (398)
T ss_pred -Hhh--ccCCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHH-HHH
Confidence 222 245999999999999998766543 33455677799999999999999999987 56543 456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 504 NLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.++.++...|+.++|..+|++++.+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999999865
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=116.09 Aligned_cols=293 Identities=16% Similarity=0.082 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+......|..++...+|..|+..|..|++.++.....+..- ......+..+.....-.... ....+..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nR-Aa~~m~~~~~~~a~~dar~~---------~r~kd~~ 116 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNR-AATLMMLGRFEEALGDARQS---------VRLKDGF 116 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchh-HHHHHHHHhHhhcccchhhh---------eecCCCc
Confidence 4566778889999999999999999999999988763222211 11112222222211111111 1223444
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHH--------HHHHHhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDAL--------TIREKTLG--ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~g--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
.......+.++...++..+|...++..- ........ ...|....+-..-+.++...|++++|...--..+
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 5566667777777777777766654211 11111100 1225555666677899999999999999888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG----PDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~----~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
++ ++....++...|.+++..++.+.|+..|++++.+-..... ...+.....+..-|.-.++.|++.+|
T Consensus 197 kl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 197 KL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred hc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 77 4788999999999999999999999999999987211100 00233455666778889999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
.+.|.+++.+.|.+.-.....+.+.+......|+..+|+.....|+.+ ++....++...|.||..+++|++|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988876666666677777788999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy597 519 EILYKQVLTRAHE 531 (546)
Q Consensus 519 ~~~~~~al~~~~~ 531 (546)
.+.|++|++...+
T Consensus 341 V~d~~~a~q~~~s 353 (486)
T KOG0550|consen 341 VEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHhhccc
Confidence 9999999987654
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-11 Score=115.49 Aligned_cols=245 Identities=24% Similarity=0.266 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.....-.+|...+...++..|+..|..++++. ...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------------------------------------------~~i 257 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------------------------------------------TDI 257 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------------------------------------------hhh
Confidence 45567889999999999999999999999852 445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hcC-
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK--VLG- 370 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~- 370 (546)
..+.+.+-+|+..|.+.+.+....++++.-...- .+...++.++..+|..|...++++.|+.+|.+++.-.+. ...
T Consensus 258 t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~ 336 (539)
T KOG0548|consen 258 TYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSK 336 (539)
T ss_pred HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH
Confidence 5577888899999999998888888877643320 112335666777889999999999999999998865432 000
Q ss_pred ---------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 371 ---------------KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 371 ---------------~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
--.|..+.-...-|..++..|+|..|+.+|.+|+.. +|..+..|.|.|.||.++|.+
T Consensus 337 lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 337 LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhH
Confidence 012333444555688888999999999999998887 788889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
..|+...+.++++.|+.. ..+..-+.++....+++.|...|.++++. +|....+...+..|+..+...
T Consensus 409 ~~aL~Da~~~ieL~p~~~----kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~ 476 (539)
T KOG0548|consen 409 PEALKDAKKCIELDPNFI----KAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGD 476 (539)
T ss_pred HHHHHHHHHHHhcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcC
Confidence 999999888888743321 12222333455555566666666666554 567777777777777664333
Q ss_pred HHHHHHHHH
Q psy597 516 KEAEILYKQ 524 (546)
Q Consensus 516 ~~A~~~~~~ 524 (546)
....+.+++
T Consensus 477 ~~~ee~~~r 485 (539)
T KOG0548|consen 477 ETPEETKRR 485 (539)
T ss_pred CCHHHHHHh
Confidence 334444444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=106.48 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=194.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
-+..|.-+.-..+.++|+..|...++ .+|....+..
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~--------------------------------------------~d~~t~e~~l 73 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQ--------------------------------------------EDPETFEAHL 73 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHh--------------------------------------------cCchhhHHHH
Confidence 34456667778889999999988887 5688889999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGEN--HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
.||.+|...|..+.|+..-+..+.. ++ ......++..||.-|...|-++.|+..|....+.- ..
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--------ef 139 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EF 139 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hh
Confidence 9999999999999999998877654 33 23346688999999999999999999999988752 44
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
...++..|..+|....+|++|+...++...+-.+ +.....+..|..||..+....+.+.|...++++++..++..
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-- 214 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV-- 214 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce--
Confidence 5668889999999999999999999988877211 22446788899999999999999999999999998755432
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
......+......|++..|.+.++.+++ .++.....+...|..+|..+|+.++...++.++.+..+.
T Consensus 215 --RAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 215 --RASIILGRVELAKGDYQKAVEALERVLE-------QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred --ehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 3344555666666776666666666554 455667889999999999999999999999999987654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-10 Score=126.39 Aligned_cols=237 Identities=13% Similarity=0.024 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+...+|.++...|++++|..++++++..... .+......+...+|.++...|++++|..++.+++...... +
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g 525 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--D 525 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--c
Confidence 4556667889999999999999999999875321 2223345677889999999999999999999999987754 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.......++.++|.++...|++++|..++++++.+.....++..+....++..+|.++...|++++|...+.+++.....
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 33445668889999999999999999999999999887644444545566778999999999999999999999987653
Q ss_pred cccC-cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC-------------------------------------C
Q psy597 452 REFG-ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG-------------------------------------P 493 (546)
Q Consensus 452 ~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~-------------------------------------~ 493 (546)
.... ........+..+...|++..|...+.++..+...... .
T Consensus 606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 685 (903)
T PRK04841 606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA 685 (903)
T ss_pred cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc
Confidence 2211 1112223444577889999999888888765432100 0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 494 ~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
........+..++.++...|++++|...+++++......+
T Consensus 686 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 686 NNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 0000111245788999999999999999999999865543
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-10 Score=117.80 Aligned_cols=293 Identities=17% Similarity=0.109 Sum_probs=209.4
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
+.+....+|..+.+|+.+|.+|..+|+.++|...+-.|-.+.++.. +.+..+........ ....+...+..+
T Consensus 162 ~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---e~W~~ladls~~~~-~i~qA~~cy~rA---- 233 (895)
T KOG2076|consen 162 LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---ELWKRLADLSEQLG-NINQARYCYSRA---- 233 (895)
T ss_pred HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcc-cHHHHHHHHHHH----
Confidence 3344567899999999999999999999999988877766544433 22222222221110 001111111111
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
....|......+..+.+|...|++..|...|.+++...+. .+-...-......+..+...++-+.|++.++.++.
T Consensus 234 --I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 234 --IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred --HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1234666778889999999999999999999999988531 12233445556668889999999999999999988
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------HHH-------------
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE----------------------IYE------------- 408 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----------------------~~~------------- 408 (546)
. .........++.++.++.....++.|......-.. ++.
T Consensus 309 ~------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 309 K------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred h------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 4 22344556677888999988888888877655444 100
Q ss_pred H---------------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH
Q psy597 409 L---------------------KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467 (546)
Q Consensus 409 ~---------------------~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 467 (546)
. .........+..+..++.+|...|++.+|+.+|..+....+ ......+...+.++
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~---~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG---YQNAFVWYKLARCY 459 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc---ccchhhhHHHHHHH
Confidence 0 00000234567888999999999999999999998876422 22344566777889
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
...+.++.|..+|.+++.. .|....+...|+.+|..+|++++|.+.++...
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--------APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999977 78889999999999999999999998888765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=118.85 Aligned_cols=163 Identities=13% Similarity=0.040 Sum_probs=120.2
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
..-+...+..+++...+.++....+. ..+.....+..+|..+...|++++|...++++++.. |+....
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--------pd~~~~ 299 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--------GDDRAI 299 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------CCcccc
Confidence 33335555666666677777655311 133478899999999999999999999999999974 333321
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhhhcc
Q psy597 380 --LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA--KTKNNLASCYLKQGKYKEAEILYKQ--VLTRAHERE 453 (546)
Q Consensus 380 --~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~--~~~~~La~~y~~~g~~~eA~~~~~~--al~~~~~~~ 453 (546)
...........++.+.++..++++++. +|+.+ ..+..+|.++...|++++|.++|+. +++..|+..
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 122333344568889999999999987 66666 8889999999999999999999994 655544322
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHH
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 487 (546)
.....+..+...|+.++|..+|++++...
T Consensus 372 -----~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 372 -----DLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 13356777889999999999999998664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.7e-10 Score=123.23 Aligned_cols=205 Identities=11% Similarity=0.016 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..++..+...|...|++++|.++|+.+.+. + .+....+|+.+...|.+.|++++|..+|.++... +-
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~------g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv 645 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEY------N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GV 645 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Confidence 456777888899999999999999887654 1 1223567888889999999999999999988764 22
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.|+ ..+|..+...|...|++++|..++.++.+. + .+....++..+...|.+.|++++|..+|+++......
T Consensus 646 ~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~- 716 (1060)
T PLN03218 646 KPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ------G-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR- 716 (1060)
T ss_pred CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence 243 567888889999999999999999988764 1 2334567889999999999999999999987653211
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.....++.++..+...|++++|...|.+.... +-.|+ ..+|..+...+.+.|++++|..++.++.+.
T Consensus 717 --PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 717 --PTVSTMNALITALCEGNQLPKALEVLSEMKRL------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 12233455566688889999998888876532 11333 456777778999999999999999988764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=102.47 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 313 ANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392 (546)
Q Consensus 313 ~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 392 (546)
..+|++++++ .|.. +..+|.++...|++++|+.+|++++.. +|....++.++|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4567788876 3432 567899999999999999999999988 48889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+++|+..|++++.+ +|..+.+++++|.++...|++++|+..|.+++...+.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999998 8889999999999999999999999999999987543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-11 Score=102.21 Aligned_cols=112 Identities=10% Similarity=0.003 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+..+|.++...|++++|+.+|.+++.+ .|....++..+|.++...|++++|+..|.+++.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 557899999999999999999999977 5666889999999999999999999999999998 488
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
.+.+++++|.++...|++++|+..|++++.+ .|..+..+.++|.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 77777788888776554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-10 Score=124.55 Aligned_cols=207 Identities=10% Similarity=0.052 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..+|+.+...|...|++++|..+|.+...... +-.|. ..+|..+...|.+.|++++|..+|+++.+..
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g------- 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN------- 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------
Confidence 34566667777777777777777776654210 11222 3466677777777777777777777765541
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.+....+|+.+...|.+.|++++|+..|.+.... +-.|+ ..+|..+...|.+.|++++|..+++++.+....
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~- 681 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK- 681 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence 1234556777777777777777777777776653 22333 456777777888888888888888777653211
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.....++.++..+...|+.++|...|.+.... +-.| ...+|..+...|.+.|++++|..+|++....
T Consensus 682 --pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 682 --LGTVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred --CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11223444555577778888887777765432 1123 3457888888899999999999988887653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-11 Score=128.90 Aligned_cols=270 Identities=13% Similarity=0.056 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
+..+|..+...|...|++++|+.+|.+....--. ...........+.........+..... .+.+. ..+...
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---pd~~t~~~ll~a~~~~g~~~~a~~i~~---~m~~~--g~~~d~ 360 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---IDQFTFSIMIRIFSRLALLEHAKQAHA---GLIRT--GFPLDI 360 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhccchHHHHHHHH---HHHHh--CCCCCe
Confidence 4567778888888888888888888776542100 000001111111111111111111111 11111 123334
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+...|.+.|++++|...|++... + ...+|+.+...|...|+.++|+.+|+++... +-.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~ 423 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVA 423 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence 5678888999999999999999987642 1 1457899999999999999999999998764 222
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|+ ..++..+...+...|+.++|..+|+...+.+ +-.| ....|..+..+|.+.|++++|.+++++.- ..
T Consensus 424 Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~- 491 (697)
T PLN03081 424 PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKP-RAMHYACMIELLGREGLLDEAYAMIRRAP----FK- 491 (697)
T ss_pred CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCC----CC-
Confidence 43 5567888888999999999999999887641 1122 34568889999999999999999886531 11
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.....+..+...+...|+.+.|...+++.+.+ .|.....|..++.+|...|++++|.+.++...+..
T Consensus 492 -p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 492 -PTVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 11122334444577788888888877776644 55556788899999999999999999999877653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=118.66 Aligned_cols=204 Identities=13% Similarity=0.083 Sum_probs=143.2
Q ss_pred hcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccC
Q psy597 206 NAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 206 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 285 (546)
......|..+...+..+.+.++.|+++.|+..|+++++..+....... .+... .........+.......
T Consensus 25 ~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~---dll~l-~~~~G~~~~A~~~~eka------ 94 (822)
T PRK14574 25 SGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD---DWLQI-AGWAGRDQEVIDVYERY------ 94 (822)
T ss_pred cccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH---HHHHH-HHHcCCcHHHHHHHHHh------
Confidence 344556777889999999999999999999999999987666431111 11110 11112222222222211
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....+.....+..+|.+|...|++++|++.|+++++.. |....++..++.+|...+++++|+..++++....
T Consensus 95 ~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 95 QSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 22234445556666889999999999999999999873 4446667788999999999999999999988773
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
|.... +..++.++...++..+|+..|+++++. .|.....+..+..++...|-...|.++.++
T Consensus 167 --------p~~~~-~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 167 --------PTVQN-YMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred --------cchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 44333 355566666678887799999999998 777777888888888888877777766553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-10 Score=120.61 Aligned_cols=133 Identities=12% Similarity=0.046 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+-.+....+....+...+-+++...+. .+..+.++.+||.+....|.+++|+.+++.++++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------- 116 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------- 116 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------
Confidence 34444445555566666666666666666644 35557788888888888888888888888888885
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|+...+..+++.++.+.+++++|+..+++++.. .|+.+.+++.+|.++...|++++|+.+|++++.
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 888888888888888888888888888888887 788888888888888888888888888888886
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-10 Score=108.22 Aligned_cols=206 Identities=11% Similarity=0.123 Sum_probs=165.6
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREK 367 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~ 367 (546)
.+....++..+-.++...+++++|+..+.+++.+ .|....+|+..+.++..+| ++++++.++.+++..
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--- 101 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--- 101 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---
Confidence 4566677766677788889999999999999988 5666889999999999999 689999999999988
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+|....+|+..+.++...|+. ++++.++.+++++ +|....+|...+.++...|++++|+.++.++
T Consensus 102 -----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 102 -----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred -----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 488888999999999999874 7889999999998 8999999999999999999999999999999
Q ss_pred HHhhhhcccCcccCCChhhHHHHhh---chh----hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----cCC
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQK---NKA----KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGK 514 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~ 514 (546)
++..+.+. .+.+..+++.... +.. +.++.+..+++.. .|....++..++.++.. .++
T Consensus 169 I~~d~~N~----sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 169 LEEDVRNN----SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHCCCch----hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCccccc
Confidence 99754432 2233333333222 222 3566677788776 78888999999999988 456
Q ss_pred HHHHHHHHHHHHHHhh
Q psy597 515 YKEAEILYKQVLTRAH 530 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~ 530 (546)
..+|...+.+++...+
T Consensus 237 ~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 237 DPEVSSVCLEVLSKDS 252 (320)
T ss_pred chhHHHHHHHhhcccC
Confidence 6778888888777443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-10 Score=102.07 Aligned_cols=123 Identities=23% Similarity=0.253 Sum_probs=109.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.++.++++..+++++.. .|.....|..+|.+|...|++++|+..|++++.+. |....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 56778889999999887 45568899999999999999999999999999984 888899999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 386 LC-QNQSK--YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 386 ~~-~~~g~--~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++ ...|+ +++|...++++++. +|....++.++|.++...|++++|+.+++++++..+.+
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 75 67787 59999999999998 88889999999999999999999999999999986653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=102.74 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=149.9
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy597 202 AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQI 281 (546)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 281 (546)
..........|.+..+ .+++..+...|+-+.+..+..++..
T Consensus 54 ~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~-------------------------------------- 94 (257)
T COG5010 54 AALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI-------------------------------------- 94 (257)
T ss_pred HHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc--------------------------------------
Confidence 3344445667777778 8888999999998888888877654
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 282 LGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 282 l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
.++.....+..+|......|+|..|+..+.++..+ .|....+|+.+|.+|.+.|+++.|..-|.++
T Consensus 95 ------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA 160 (257)
T COG5010 95 ------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQA 160 (257)
T ss_pred ------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence 45666667777999999999999999999999987 4555889999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
+++. +....+.+|+|..+.-.|+++.|..++..+... .+....+..||+.+...+|++++|...
T Consensus 161 l~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 161 LELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 9996 777888999999999999999999999999876 555777899999999999999999977
Q ss_pred HHHH
Q psy597 442 YKQV 445 (546)
Q Consensus 442 ~~~a 445 (546)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-10 Score=101.39 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=108.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
.++.++++..+++++.. +|.....|..+|.+|...|++++|+..|++++.+ .|....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67789999999999988 4888999999999999999999999999999999 8888999999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy597 428 CY-LKQGK--YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN 504 (546)
Q Consensus 428 ~y-~~~g~--~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 504 (546)
++ ...|+ +++|...+++++.. +|....++..
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~----------------------------------------------dP~~~~al~~ 149 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL----------------------------------------------DANEVTALML 149 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh----------------------------------------------CCCChhHHHH
Confidence 74 67787 59999999999886 5667788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 505 LASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 505 La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+|..+...|++++|+.+++++++..|.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999998764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-10 Score=118.95 Aligned_cols=138 Identities=8% Similarity=0.026 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+..+.++..||.+....|.+++|...++.++++ .|....+..+++.++.+.+++++|+..+++++..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--- 149 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--- 149 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---
Confidence 45777889999999999999999999999999988 4666888999999999999999999999999988
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|+.+..++.+|.++...|++++|+.+|++++.- +|....++..+|.++...|+.++|...|+++++
T Consensus 150 -----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 150 -----GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred -----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999885 777888999999999999999999999999988
Q ss_pred hh
Q psy597 448 RA 449 (546)
Q Consensus 448 ~~ 449 (546)
..
T Consensus 217 ~~ 218 (694)
T PRK15179 217 AI 218 (694)
T ss_pred hh
Confidence 64
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-09 Score=107.65 Aligned_cols=186 Identities=22% Similarity=0.279 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+..+.+.+.+|+..|.+.+++..+..+++......- +....
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-------------------------------------d~klI 297 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-------------------------------------DYKLI 297 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-------------------------------------HHHHH
Confidence 66677888999999999999999999888774332210 11224
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH--hcC----------------CCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREK--TLG----------------ENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~g----------------~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
+.++..+|..|...++++.|+.+|.+++.-.+. ... --.|..+.-...-|..++..|+|..|
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 555666888888899999999999998876543 100 01344455566779999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
+.+|.+|+.. .|..+..|.|.|.||..+|.+..|+...+.++++ +|.....|..-|.++..+.+
T Consensus 378 v~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 378 VKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHH
Confidence 9999999987 4999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 435 YKEAEILYKQVLTRAHE 451 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~ 451 (546)
|++|++.|.+++...+.
T Consensus 442 ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhcCch
Confidence 99999999999997543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=88.59 Aligned_cols=77 Identities=45% Similarity=0.728 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
||..+.++.++|.+|...|+|++|+.+|++++++ .+..|++++..+.++.++|.++...|++++|+.++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5778999999999999999999999999999999 6667777888999999999999999999999999999999865
|
... |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=116.78 Aligned_cols=250 Identities=18% Similarity=0.232 Sum_probs=167.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCC
Q psy597 207 AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGG 286 (546)
Q Consensus 207 ~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 286 (546)
.+.-.|.+..++..++..|...+++++|+..+..+++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------------------------------- 59 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK------------------------------------------- 59 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------------------------------
Confidence 3455688999999999999999999999999998887
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG-----------ENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-----------~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.+|.....++.+|.++...+++.+|... .++.+...... .+.+..-.+++.+|.||-.+|++++|.
T Consensus 60 -~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~ 136 (906)
T PRK14720 60 -EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLK 136 (906)
T ss_pred -hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHH
Confidence 4677788888889988888888877766 55555432200 112233368889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
..|++++++ +|..+.+++++|..|... ++++|+.++.+|+..+-.. .........|.. .|...--++
T Consensus 137 ~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~--kq~~~~~e~W~k--~~~~~~~d~ 203 (906)
T PRK14720 137 GVWERLVKA--------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK--KQYVGIEEIWSK--LVHYNSDDF 203 (906)
T ss_pred HHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh--hcchHHHHHHHH--HHhcCcccc
Confidence 999999998 488899999999999999 9999999999998874322 001111111111 112222222
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHH-HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
+.=..+.++++.. ..++.........|. |...++++++...+..++++ .|....+...++.+|. +.
T Consensus 204 d~f~~i~~ki~~~---~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~k 270 (906)
T PRK14720 204 DFFLRIERKVLGH---REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EK 270 (906)
T ss_pred hHHHHHHHHHHhh---hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HH
Confidence 2222222222221 112222222333333 55667788888888888776 6667777888888887 44
Q ss_pred HHHHHHHHHHHHHHh
Q psy597 515 YKEAEILYKQVLTRA 529 (546)
Q Consensus 515 ~~~A~~~~~~al~~~ 529 (546)
|.. ...|+.++++.
T Consensus 271 Y~~-~~~~ee~l~~s 284 (906)
T PRK14720 271 YKD-HSLLEDYLKMS 284 (906)
T ss_pred ccC-cchHHHHHHHh
Confidence 444 55555555543
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.4e-10 Score=105.28 Aligned_cols=183 Identities=22% Similarity=0.174 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.-...-..-+.|+...|++++|...--..++ .++.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk--------------------------------------------ld~~ 201 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILK--------------------------------------------LDAT 201 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHh--------------------------------------------cccc
Confidence 66667778888999999999999988877776 4577
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG----ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
...+++..|.+++..++.+.|+.+|++++.+.+.... -..+.....+..-|.-.++.|+|..|.++|..+|.+...
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 7888999999999999999999999999998543310 013445566777899999999999999999999998522
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+....+..|.+.|.+...+|+..+|+.-...|+.+ ++....++...|.|+..+++|++|.+.|+++++
T Consensus 282 ----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 282 ----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23456888999999999999999999999999999 999999999999999999999999999999998
Q ss_pred hhh
Q psy597 448 RAH 450 (546)
Q Consensus 448 ~~~ 450 (546)
...
T Consensus 350 ~~~ 352 (486)
T KOG0550|consen 350 LEK 352 (486)
T ss_pred hcc
Confidence 643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=118.99 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+|+.+...|...|++++|+.+|++.... +-.|. ..++..+...+...|++++|...+..+++.. .+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~ 357 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FP 357 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhC-------CC
Confidence 3444444455555555555544444321 11111 2244444444555555555555544444331 12
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
....+++.+...|.+.|++++|...|++..+ + ...+|+.+...|.+.|+.++|+++|++........
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-- 424 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-- 424 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Confidence 2233445555555555555555555544321 1 22345556666666666666666666555421110
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~ 524 (546)
...........+...|..++|...|....+.+ +-.| ....|..+..+|.+.|++++|.+.+++
T Consensus 425 -d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 425 -NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKP-RAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred -CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-CccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 01112222223445555555555555443220 1112 234566667777777777777666554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-09 Score=111.53 Aligned_cols=311 Identities=12% Similarity=0.074 Sum_probs=190.1
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...+.....+.....|.....+..+|..|...|+|++|+..|+++++..+....-+ ...........+...+...+
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHH
Confidence 34455555555544455566677778899999999999999999998755542111 11111112222222222222
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
..+ ....|.... +..++.++...+++.+|+..++++++. .|....++..+..++...|-...|.+
T Consensus 160 ~~l------~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 160 TEL------AERDPTVQN-YMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred HHh------cccCcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 222 223344332 244455555566776688888888877 45556677778888888888888887
Q ss_pred HHHHHHHHHH--------------Hh---------------------------c---CCC---ChHHHHHHHHHHHHHHH
Q psy597 357 LCKRALEIRE--------------KV---------------------------L---GKE---HPDVAKQLNNLALLCQN 389 (546)
Q Consensus 357 ~~~~al~~~~--------------~~---------------------------~---~~~---~~~~~~~~~~la~~~~~ 389 (546)
...+--..+. .+ . +.. ++....+..-.-.++..
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 7776442210 00 0 000 11112222233334455
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccC--CChhhHHH
Q psy597 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG--DNKPIWQD 467 (546)
Q Consensus 390 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~~ 467 (546)
.|++.+++..|+..... ..+.-..+....|..|+..+++++|+.+|++++.-.++........ ...+.+.+
T Consensus 305 r~r~~~vi~~y~~l~~~-------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 305 RHQTADLIKEYEAMEAE-------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred hhhHHHHHHHHHHhhhc-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 66666666666554432 1222233677789999999999999999999987543211111111 24567778
Q ss_pred HhhchhhHHHHHHHHHHHHHH---H----HcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 468 RQKNKAKNREKYYQRALEIYE---L----KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~---~----~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
...+++++|..++++....-. . .....+|+.......++.++...|++.+|.+.+++.+...|.++
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999888876211 0 00123566677888888888999999999999999988877654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-09 Score=94.33 Aligned_cols=170 Identities=21% Similarity=0.267 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.+..++..|..++..|+|.+|+..|++.+..+ +..+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----------------------------------------P~s~~a~ 42 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----------------------------------------PNSPYAP 42 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------------------------------------------TTSTTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------------------------CCChHHH
Confidence 46789999999999999999999999998863 3677888
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-----------KYKEAEPLCKRAL 362 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al 362 (546)
.+.+.+|.+++..|++..|+..+++.+..+ |+++....+++.+|.+++... ...+|+..|+..+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 667888899999999877653 2357888888888
Q ss_pred HHHHHhcCCCChHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAK--------------QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
..+ ++++.... --..+|..|.+.|.|..|+..++.+++.+ |+.+....++..++..
T Consensus 118 ~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 118 KRY-----PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEA 187 (203)
T ss_dssp HH------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHH
T ss_pred HHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence 776 44343322 23456889999999999999999999885 6678888999999999
Q ss_pred HHHcCCHHHHH
Q psy597 429 YLKQGKYKEAE 439 (546)
Q Consensus 429 y~~~g~~~eA~ 439 (546)
|..+|..+.|.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 99999988554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.4e-09 Score=105.67 Aligned_cols=142 Identities=19% Similarity=0.128 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
..++++.+|..|...|++++|+.+.++|++. .|..+..|...|.+|-..|++.+|...++.+-.+...+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-- 262 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR-- 262 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--
Confidence 3678899999999999999999999999998 899999999999999999999999999999988755443
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC-C-CC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG-P-DD---SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~-~-~~---~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
...+..+....+.|+.++|...+..- .+... + .+ -...+.....|.+|.+.|++..|++.|..+.+.+.
T Consensus 263 --yiNsK~aKy~LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 263 --YINSKCAKYLLRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22334455577778888776654432 21110 0 01 12345556789999999999999999999999886
Q ss_pred hhc
Q psy597 531 ERE 533 (546)
Q Consensus 531 ~~~ 533 (546)
+..
T Consensus 337 ~~~ 339 (517)
T PF12569_consen 337 DFE 339 (517)
T ss_pred HHh
Confidence 643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=86.61 Aligned_cols=78 Identities=46% Similarity=0.684 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
||..+.++.++|.+|...|+|++|+.+|++++++ .+..|++++..+.++.++|.++...|++++|+.++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5788999999999999999999999999999999 66667778889999999999999999999999999999998753
|
... |
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-09 Score=102.33 Aligned_cols=267 Identities=15% Similarity=0.122 Sum_probs=193.7
Q ss_pred CCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHH
Q psy597 195 PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274 (546)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 274 (546)
+....+...+.+...-+|..+...-..|..+...|+++.-..+-...+.....+...+--+. ..+-...+...+..
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~----~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA----QLLYDEKKFERALN 321 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh----hhhhhhhhHHHHHH
Confidence 33455666777777888999999999999999999999877766666554332221111000 00000111111111
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
... +.....+....++...|.++...|+..+|+-.|+.|..+. |...++|..|-.+|...|++.+|
T Consensus 322 ~~e------K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 322 FVE------KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHH------HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHH
Confidence 111 1123456677889999999999999999999999999884 66689999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLA-LLCQN-QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
.-..+.++... |..+.++..+| .++.. -.--++|..++++++.+ .|....+...+|.++...
T Consensus 388 ~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 388 NALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhh
Confidence 99999999987 77788888886 55443 33458899999999998 899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
|++.+++.++++.+...++. .....++......+.+.+|..+|..|+.+ +|..-.++..+-.+
T Consensus 452 g~~~D~i~LLe~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------DPKSKRTLRGLRLL 514 (564)
T ss_pred CccchHHHHHHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CccchHHHHHHHHH
Confidence 99999999999999875543 33445555666666777777777777665 66666665555444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-08 Score=92.81 Aligned_cols=170 Identities=26% Similarity=0.356 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+.+.+|.+++..|+++.|+..+++.+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678999999999999999999999999887 6678889999999999999999999999999999988 7
Q ss_pred CChHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH--------------HHH
Q psy597 372 EHPDVAKQLNNLALLCQNQS-----------KYEEVERYYQRALEIYELKLGPDDSNVAKTKN--------------NLA 426 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g-----------~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~La 426 (546)
++|....+++.+|.+++... ...+|+..|+..+..+ |+++....+.. .+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999877643 2346777777777664 44444443333 235
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLA 506 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La 506 (546)
..|.+.|.|..|+..++.+++.. ++.+....++..++
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-------------------------------------------p~t~~~~~al~~l~ 185 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-------------------------------------------PDTPAAEEALARLA 185 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-------------------------------------------TTSHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------------------------------------------CCCchHHHHHHHHH
Confidence 55555555555555555555543 34667778999999
Q ss_pred HHHHHcCCHHHHH
Q psy597 507 SCYLKQGKYKEAE 519 (546)
Q Consensus 507 ~~y~~~g~~~~A~ 519 (546)
..|..+|..+.|.
T Consensus 186 ~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 186 EAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHTT-HHHHH
T ss_pred HHHHHhCChHHHH
Confidence 9999999988554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=97.86 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|+|..|+..++++....
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-- 130 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-- 130 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--
Confidence 45666666 88899999999999888888886644 33335556668999999999999999999999884
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|....+++.+|.+|.+.|++++|...|.+++++ .+..+.+.+|+|..|.-.|+++.|..++..+..
T Consensus 131 ------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 131 ------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888999999999999999999999999999999 777788899999999999999999999888775
Q ss_pred h
Q psy597 448 R 448 (546)
Q Consensus 448 ~ 448 (546)
.
T Consensus 197 ~ 197 (257)
T COG5010 197 S 197 (257)
T ss_pred C
Confidence 3
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-08 Score=93.47 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++..|..++..|+|++|+..|++++.. .+..+....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----------------------------------------yP~s~~a~~ 70 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR-----------------------------------------YPFGPYSQQ 70 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------------------CCCChHHHH
Confidence 456888999999999999999999999885 335577778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---------------C---HHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---------------K---YKEAEP 356 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~ 356 (546)
+.+.+|.+|+..+++++|+..+++.+... |++|....+++.+|.++...+ + ..+|+.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 88999999999999999999999999997 678888999999998865554 2 246778
Q ss_pred HHHHHHHHHHHhcCCCChHHHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQ--------------LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~--------------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
.|++.++.+ ++++....+ -..+|..|.+.|.|..|+.-++.+++-+ |+.+....++
T Consensus 146 ~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal 215 (243)
T PRK10866 146 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDAL 215 (243)
T ss_pred HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHH
Confidence 888887775 333332222 3356888999999999999999999875 6678899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~a 445 (546)
..++..|..+|..++|.......
T Consensus 216 ~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 216 PLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999998876543
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-07 Score=94.67 Aligned_cols=301 Identities=14% Similarity=0.067 Sum_probs=193.6
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
++......+...++....+|+.+|.++....+|++|+.+|+.|+.+-+.+..-+.. ..++...+.............
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD-lslLQ~QmRd~~~~~~tr~~L-- 135 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD-LSLLQIQMRDYEGYLETRNQL-- 135 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHhhhhHHHHHHHH--
Confidence 34444555566778888999999999999999999999999999864443311111 111111111111111111111
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
....|..-..|...+..+...|++..|....+...........+.......+......+....|.+++|.+.+
T Consensus 136 -------Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 136 -------LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred -------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2245667778999999999999999999999888877653322223344556666777888888888888776
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
.+--... .+........|.++..++++++|...|...+.. .|+....+..+-.++.+-.+--++
T Consensus 209 ~~~e~~i--------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 209 LDNEKQI--------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HhhhhHH--------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHH
Confidence 6543322 344555666788999999999999999988887 666666666555555411111222
Q ss_pred H-HHHHHHHHhhhhc----------------------------------------------------------------c
Q psy597 439 E-ILYKQVLTRAHER----------------------------------------------------------------E 453 (546)
Q Consensus 439 ~-~~~~~al~~~~~~----------------------------------------------------------------~ 453 (546)
+ ..|...-+..+.. +
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 2 2222111111100 0
Q ss_pred --------cCcccCCChhhHH-------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 454 --------FGACDGDNKPIWQ-------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 454 --------~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
.+...+.....|. +...|+++.|..+.+.|+.. .|...+.+..-|+++...|++++|
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eA 424 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEA 424 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHH
Confidence 0111233444554 44567777777777777754 788899999999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy597 519 EILYKQVLTRAHERE 533 (546)
Q Consensus 519 ~~~~~~al~~~~~~~ 533 (546)
..++++|.++...+.
T Consensus 425 a~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 425 AAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHhccchhH
Confidence 999999888765443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=91.79 Aligned_cols=102 Identities=21% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+......+.+|..++..|++++|...|+-...+ +|.....|++||.++..+|+|++|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 666788999999999999999999999999988 5999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+|+.+.++.++|.||+..|+.+.|...|+.++...
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=94.65 Aligned_cols=119 Identities=20% Similarity=0.275 Sum_probs=98.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.....+.+++.+|.++...|++++|+..|.+++.+. ++++..+.++.++|.++...|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-- 102 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-- 102 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 345567889999999999999999999999999884 3445567799999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQ-------NQSKYEEVERYYQRALEIYELKLGPDDSNVA 419 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~-------~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 419 (546)
|.....+.++|.++. ..|+++.|+..+.+++..+++..+.+++...
T Consensus 103 ------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 103 ------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred ------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 444555666666666 8999999999999999999888776664443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=93.11 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
..+++++.. +|........+|..+...|++++|...+++++.. +|....++.++|.++...|++
T Consensus 4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHH
Confidence 345666665 4777888999999999999999999999999988 777889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
++|..++++++.. .|.....++.+|.+|...|++
T Consensus 68 ~~A~~~~~~~~~~----------------------------------------------~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 68 EEAIDAYALAAAL----------------------------------------------DPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHHHHHhc----------------------------------------------CCCChHHHHHHHHHHHHcCCH
Confidence 9999999988875 455677888999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 516 KEAEILYKQVLTRAHER 532 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~~ 532 (546)
++|+.+|+++++..|+.
T Consensus 102 ~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 102 ESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999987654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=93.18 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 314 NLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY 393 (546)
Q Consensus 314 ~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 393 (546)
+.|.+++.. +|........+|..+...|++++|...+++++.. .|....++.++|.++...|++
T Consensus 4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHH
Confidence 345666654 5656788999999999999999999999999887 377889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++|+.++++++.+ +|.....++++|.+|...|++++|+.+|++++...+..
T Consensus 68 ~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 68 EEAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999998 77788899999999999999999999999999986543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=99.79 Aligned_cols=123 Identities=29% Similarity=0.380 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...+.-+-.-|.-+...++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|.|+.|++-++.++.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----- 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 345677778899999999999999999999998 5666888999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
+|....+|..||.+|..+|++++|++.|++++++ +|.....+.+|..+-.+++...
T Consensus 145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 5999999999999999999999999999999999 8888888888888877777665
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-08 Score=96.35 Aligned_cols=208 Identities=13% Similarity=0.027 Sum_probs=166.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+....+.-..|..-+..+...+-++-|...|..+++.+ |..-.+|...+..-..-|..+.-..++++++..+
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 34455666677888888888899999999999999885 3335677777777788888999999999998886
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
|.....|...+..++..|+...|...+..|++. .|+....+..-..+.....+++.|..+|.++
T Consensus 581 --------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 581 --------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred --------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666677778888888899999999999999887 7777788888888888888999999999888
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
....+ ....+.........++..++|+..++++++. .|.....|..+|.++..+++.+.|...|...
T Consensus 645 r~~sg-----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 645 RSISG-----TERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred hccCC-----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 77533 2244455555677778888888888888887 5777788889999999999999999998888
Q ss_pred HHHhh
Q psy597 526 LTRAH 530 (546)
Q Consensus 526 l~~~~ 530 (546)
++..|
T Consensus 712 ~k~cP 716 (913)
T KOG0495|consen 712 TKKCP 716 (913)
T ss_pred cccCC
Confidence 87654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=90.59 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+......+.+|..++..|++++|...|+-...+ +|.....|++||.++..+|+|.+|+..|..++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 677888999999999999999999999999999 9999999999999999999999999999999886
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+|+.+..++++|.++...|+.+.|.+.|+.|+...
T Consensus 99 -----------------------------------------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 -----------------------------------------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----------------------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999887
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-08 Score=91.31 Aligned_cols=189 Identities=14% Similarity=0.097 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++..|..+...|+|++|+..|++++... +..+....+...+|.+|+..+++++|+..+++.++.. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 45668889999999999999999999999876 5667888889999999999999999999999999997 7
Q ss_pred CChHHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 372 EHPDVAKQLNNLALLCQNQS---------------KY---EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g---------------~~---~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
++|....+++.+|.++...+ |. .+|+..|++.++.+ |+++....+...+..+..++.
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78999999999998875544 22 35666677666653 444444444333332222111
Q ss_pred CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 513 (546)
+.+ ...+..|...|.+..|...++..+.-+ ++.+...+++..++..|...|
T Consensus 176 ~~e------------------------~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 176 KYE------------------------LSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred HHH------------------------HHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcC
Confidence 111 011222333444444444444444433 446778899999999999999
Q ss_pred CHHHHHHHHHH
Q psy597 514 KYKEAEILYKQ 524 (546)
Q Consensus 514 ~~~~A~~~~~~ 524 (546)
..++|......
T Consensus 227 ~~~~a~~~~~~ 237 (243)
T PRK10866 227 LNAQADKVAKI 237 (243)
T ss_pred ChHHHHHHHHH
Confidence 99999887653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-08 Score=114.84 Aligned_cols=196 Identities=20% Similarity=0.151 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+++.+-..|.+.|++++|...|+.. . + ...+|+.+...|...|+.++|+.+|++..+. +-.|
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~-------~----d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~P 587 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-E-------K----DVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNP 587 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-C-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Confidence 4456678899999999999888775 1 1 1557999999999999999999999998764 2224
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
+ ..++..+-..|...|++++|..+|+...+.+ +-.| ....|..+..+|.+.|++++|.+++++.- ..|
T Consensus 588 d-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p---- 655 (857)
T PLN03077 588 D-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITP-NLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP---- 655 (857)
T ss_pred C-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC----
Confidence 3 4456666678999999999999999987442 2233 34688999999999999999999988752 111
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
....+..+...+...++.+.+....++.+++ .|.....|..++.+|...|++++|.+..+...+..
T Consensus 656 -d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 656 -DPAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 1122233333456667777777777777665 67777889999999999999999999888776543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.4e-09 Score=112.89 Aligned_cols=225 Identities=14% Similarity=0.147 Sum_probs=161.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+.-.|....++..|...|...+++++|+..++.+++. +|.....++.+|.++...+++.+|... .++...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 4567888999999999999999999999999988877 566788999999999999999888877 555554
Q ss_pred HHhc-----------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 366 EKVL-----------GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 366 ~~~~-----------~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
.... -.+.+..-.++..+|.||..+|++++|...|++++++ +|..+.+++++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence 2110 0112334468999999999999999999999999999 899999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
.++|+.++.+++...-.... .......|.-.-..+.+.- ..|.+.++......+ .......+.-+=..|...++
T Consensus 165 L~KA~~m~~KAV~~~i~~kq---~~~~~e~W~k~~~~~~~d~-d~f~~i~~ki~~~~~--~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQ---YVGIEEIWSKLVHYNSDDF-DFFLRIERKVLGHRE--FTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCcccc-hHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhhhhh
Confidence 99999999999987432210 0011111221111111111 011111111111111 22344556666689999999
Q ss_pred HHHHHHHHHHHHHHhhhhccC
Q psy597 515 YKEAEILYKQVLTRAHEREFG 535 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~~~~ 535 (546)
|++++.+++.+++..+.+..+
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhh
Confidence 999999999999988876544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=6e-09 Score=92.40 Aligned_cols=104 Identities=23% Similarity=0.243 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
....+.+++.+|.++...|++++|+..|++++.+. ++++..+.++.++|.++...|++++|+.+|++++.+
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---- 101 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---- 101 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34457889999999999999999999999999884 334556779999999999999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH
Q psy597 411 LGPDDSNVAKTKNNLASCYL-------KQGKYKEAEILYKQVLT 447 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~-------~~g~~~eA~~~~~~al~ 447 (546)
.|.....+.++|.+|. ..|+++.|+..+.+++.
T Consensus 102 ----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 102 ----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred ----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 5666677788888887 55555555555554443
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-08 Score=98.32 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=150.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++....+|..+|.++....+|++|+.+|..|+.+ .+....++..++.+...+++++-....-.+.++..
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-- 139 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-- 139 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 56677788999999999999999999999999988 56668899999999999999999999988888885
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|..-..|...+..+...|++..|....+...........+.......+......+..+.|.+++|.+.+..--.
T Consensus 140 ------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 140 ------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 88888999999999999999999999988877755333333344556666677788889998888887765433
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~ 510 (546)
..- .........+..+...++.++|...|...+.. .|+....+..+-.++.
T Consensus 214 ~i~----Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 214 QIV----DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALG 264 (700)
T ss_pred HHH----HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHH
Confidence 211 11112233445567777777777777776654 6888888887777776
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-06 Score=87.99 Aligned_cols=301 Identities=16% Similarity=0.139 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.+..++...|.++++.|+|++|+..|+..++. ...+++.-+.....+.... .....+........+
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn---~~dd~d~~~r~nl~a~~a~----------l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN---NSDDQDEERRANLLAVAAA----------LQVQLLQSVPEVPED 173 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHh----------hhHHHHHhccCCCcc
Confidence 334567888999999999999999999887652 2222222111111110000 000011111223344
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA-------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
....+++.|.++...|+|.+|++.+++|+.++++.+..++. ....+...++.++..+|+..+|...|...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 67889999999999999999999999999998877543322 34567788999999999999999999887764
Q ss_pred HHHhcCCCChHH---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Q psy597 365 REKVLGKEHPDV---------------------------------------------AKQLNNLALLCQNQSKYEEVERY 399 (546)
Q Consensus 365 ~~~~~~~~~~~~---------------------------------------------~~~~~~la~~~~~~g~~~eA~~~ 399 (546)
.. .|.|.. -.++.|.+.+.+..+.-+.+.+.
T Consensus 254 ~~----~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 254 NP----ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred cC----CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 21 111111 11233444444444433333222
Q ss_pred ---------------------------HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 400 ---------------------------YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 400 ---------------------------~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+.++..........+......+...++.+...+|++..|++.+...+... .+
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~-~s 408 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW-KS 408 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-hh
Confidence 12222222222222233346678888999999999999999998554221 11
Q ss_pred ccCccc---CCC-hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACD---GDN-KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~---~~~-~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+.... ... .+...+...++.+.|...+.+|+..|...... .+.....+..++.+..+.|+-++|...+++.++.
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 111111 111 11222666777788999999999999877654 4666677788888989999999999999999986
Q ss_pred hhh
Q psy597 529 AHE 531 (546)
Q Consensus 529 ~~~ 531 (546)
.|.
T Consensus 488 n~~ 490 (652)
T KOG2376|consen 488 NPN 490 (652)
T ss_pred CCc
Confidence 653
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-08 Score=103.67 Aligned_cols=217 Identities=17% Similarity=0.165 Sum_probs=177.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
-++..+.++..||.+|+...+...|..+|.+|.++ ++..+.+.-..+..|....+++.|...+-.+-+....
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 56888999999999999999999999999999988 5666888889999999999999999996665554311
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
......|..+|..|...+++..|+..|+.|+.. +|....+|..+|.+|...|++..|++.|.++..
T Consensus 559 ------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 559 ------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred ------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 223345666999999999999999999999998 999999999999999999999999999999988
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
+.|.+.++ ....+......|++.+|...+...+..+..-... ....+.++..++..+...|=+.+|..+++++++
T Consensus 625 LrP~s~y~----~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~-q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 625 LRPLSKYG----RFKEAVMECDNGKYKEALDALGLIIYAFSLERTG-QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred cCcHhHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 76654322 3334455677899999999888887665433221 345677888888888888999999999999988
Q ss_pred Hhhh
Q psy597 528 RAHE 531 (546)
Q Consensus 528 ~~~~ 531 (546)
.+.-
T Consensus 700 ~f~~ 703 (1238)
T KOG1127|consen 700 SFIV 703 (1238)
T ss_pred HHHH
Confidence 7743
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-08 Score=87.00 Aligned_cols=106 Identities=22% Similarity=0.288 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 329 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
...+..+.+++.+|..+...|++++|+.+|++++... ++++....++.++|.++...|++++|+.+|.+++.+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 101 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-- 101 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4456678889999999999999999999999999875 233445788999999999999999999999999998
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|....++..+|.+|...|+...+...+..++.
T Consensus 102 ------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 102 ------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred ------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH
Confidence 777788899999999999987777766555543
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-09 Score=95.62 Aligned_cols=124 Identities=27% Similarity=0.288 Sum_probs=109.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.-..++.+-.-|.-+...++|.+|+..|.+||++ .|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------------------------------------------~P 112 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------------------------------------------DP 112 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------------------------CC
Confidence 3456778888999999999999999999999994 67
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..|.+.|.+|...|.|+.|++.++.|+.+ +|....+|..||.+|..+|++.+|+..|++++++.
T Consensus 113 ~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld----- 179 (304)
T KOG0553|consen 113 TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD----- 179 (304)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----
Confidence 77888999999999999999999999999998 68889999999999999999999999999999994
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
|.......+|..+-...+...
T Consensus 180 ---P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 180 ---PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---CCcHHHHHHHHHHHHHhcCCC
Confidence 777777777777777666655
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-07 Score=85.41 Aligned_cols=188 Identities=18% Similarity=0.149 Sum_probs=133.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.++...++-....+....|+.+-|..++++....+ |........-|..+...|++++|+++|+..++-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---- 115 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---- 115 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc----
Confidence 45566667777788888899999999988876664 222445566788888999999999999988765
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+|....++-..-.+...+|+.-+|++.+..-++. .+....+|..++.+|...|+|++|.-+|++++-+
T Consensus 116 ----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 116 ----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred ----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 4777777777777778889999999999988888 5677889999999999999999999999998876
Q ss_pred hhhcccCcccCCChhhHH---HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 449 AHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
.|-++. .....+.. .....+...+..+|.+|+++ .|....+++.+-.+....
T Consensus 184 ~P~n~l----~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 184 QPFNPL----YFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNLRALFGIYLCGSAL 238 (289)
T ss_pred CCCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhHHHHHHHHHHHHHH
Confidence 332110 00011111 11223455667777777776 565566666555544433
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-09 Score=105.57 Aligned_cols=218 Identities=20% Similarity=0.183 Sum_probs=160.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccC
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-----GKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 285 (546)
.|..+..-..++..+...|-...|+..|++.-...+... |....|..+...-
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~----------------------- 450 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQE----------------------- 450 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHH-----------------------
Confidence 466677788899999999999999999987654322211 1111111111111
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
. ..+..+..|..+|.+.....=|++|.++++..- +.+...+|......++|.++..+++.++++.
T Consensus 451 l-ek~~d~~lyc~LGDv~~d~s~yEkawElsn~~s--------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 451 L-EKDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS--------------ARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred h-cCCCcchhHHHhhhhccChHHHHHHHHHhhhhh--------------HHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 1 234555667777776666555555554444322 4456677777778899999999999999994
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
|.....|+++|.+..+.+++..|..+|.+++.+ .|+...+|+|++..|.+.|+..+|...++++
T Consensus 516 --------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 516 --------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred --------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 889999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
++.. ...+..+-+........|.+++|...|.+-+.+
T Consensus 580 lKcn----~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 580 LKCN----YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcC----CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9853 333444455555566777788887777777765
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-07 Score=84.39 Aligned_cols=171 Identities=17% Similarity=0.171 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|+....+-....+....|+.+.|..++++.... .|.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------------------------------------------fp~ 84 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------------------------------------------FPG 84 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------------------------------------------CCC
Confidence 456677777888888999999999999887663 245
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
..++...-|..+...|.+++|+++|+..++ ++|....++-..-.+...+|+.-+|++.+..-++.+
T Consensus 85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------ 150 (289)
T KOG3060|consen 85 SKRVGKLKAMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------ 150 (289)
T ss_pred ChhHHHHHHHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------
Confidence 556667778899999999999999999885 356666677777777888999999999999999997
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG---KYKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g---~~~eA~~~~~~al~~ 448 (546)
+....+|..++.+|...|+|++|.-+|++.+=+ .|..+..+..+|.+++-+| ++.-|.++|.+++++
T Consensus 151 --~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 151 --MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred --cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999988 8888888999999998887 577899999999998
Q ss_pred hh
Q psy597 449 AH 450 (546)
Q Consensus 449 ~~ 450 (546)
.+
T Consensus 221 ~~ 222 (289)
T KOG3060|consen 221 NP 222 (289)
T ss_pred Ch
Confidence 65
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-08 Score=109.97 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+++.+...|.+.|++++|...|++... + ...+|+.+...|...|++++|+.+|++++.. .
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~--- 485 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE-------K----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT---L--- 485 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---C---
Confidence 345678888899999999999998887532 1 1346888888899999999999999988642 1
Q ss_pred CChHHH----------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 372 EHPDVA----------------------------------KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 372 ~~~~~~----------------------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
.|+.. ..++.+-..|.+.|++++|...|... +.
T Consensus 486 -~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------------~~ 552 (857)
T PLN03077 486 -KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------------EK 552 (857)
T ss_pred -CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------------CC
Confidence 12211 12233446677777777777776553 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN 497 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 497 (546)
...+|+.+...|...|+.++|+.+|++........ ...........+...|..++|..+|......+ +-.|.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P---d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~ 624 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP---DEVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN 624 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc
Confidence 34578999999999999999999999987642211 11223334445777888888888888776332 11233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 498 VAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 498 ~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
...|..+..+|.+.|++++|.+++++.
T Consensus 625 -~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 625 -LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred -hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 467888999999999999999988764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-08 Score=84.56 Aligned_cols=131 Identities=24% Similarity=0.214 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
+.-.......++...+...++..+.-. ++.+....+...+|.+++..|++++|...|++++... +++...
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~ 84 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELK 84 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHH
Confidence 333344446888888888888877764 5567778899999999999999999999999999864 334556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
..+...+|.++...|++++|+..++.. ++.+..+.++..+|.+|...|++++|...|++++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 778899999999999999999999662 2355677788899999999999999999999874
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-07 Score=96.64 Aligned_cols=301 Identities=18% Similarity=0.100 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCchhH------HHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 212 PARLRTLHNLVI-QYASQGRYEVAVPLCKQALEDLEKTSGKYEA------AETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 212 p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
|.++..+...+. |+.+.|.+++++.+..+++..+....+.... +..+...+.....+........+..+.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 444555555444 4556799999999999999976443332221 111112222222222222223333344444
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
...-.|..+.+.+.++.-|..+++.+.|..+..+++++.+ ...+.+|..+|.++...+++.+|+.+...+++-
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4334555568899999999999999999999999999832 223678999999999999999999999999988
Q ss_pred HHHhcCCCC-----------hHH--HHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 365 REKVLGKEH-----------PDV--AKQLNNL----------------------ALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 365 ~~~~~~~~~-----------~~~--~~~~~~l----------------------a~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
....++..+ +.. ..+...| +.+....++..+|+..++++..+...
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 643211100 000 0000000 11112233455555555555554432
Q ss_pred hc----------------CCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc
Q psy597 410 KL----------------GPDDS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN 471 (546)
Q Consensus 410 ~~----------------~~~~~--~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (546)
.. +++++ .....|...+..+...++.++|..++.++-.+.+.. ...+...+..+...|
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~----~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS----ASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh----HHHHHHhhHHHHHHH
Confidence 11 11111 123456677888999999999999999988875332 123444555577778
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhhh
Q psy597 472 KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI--LYKQVLTRAHE 531 (546)
Q Consensus 472 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~--~~~~al~~~~~ 531 (546)
+..+|...|..|+.+ +|+...+...+|.++...|+..-|.. .+..++++.|.
T Consensus 699 ~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 699 QLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred hhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 888888888888877 78888889999999999999888888 99999996544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.9e-08 Score=83.21 Aligned_cols=105 Identities=25% Similarity=0.222 Sum_probs=89.0
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.++.+....+...+|.+++..|++++|...|++++... +++.....+...+|.++...|++++|+..+...
T Consensus 41 ~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---- 111 (145)
T PF09976_consen 41 YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQI---- 111 (145)
T ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----
Confidence 44556678889999999999999999999999999863 345556778899999999999999999999662
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL 404 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 404 (546)
.+.+..+.++..+|.+|...|++++|+..|++|+
T Consensus 112 -----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 -----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 2235667788899999999999999999999875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-06 Score=90.72 Aligned_cols=270 Identities=17% Similarity=0.159 Sum_probs=172.4
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh------------------h
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET------------------L 258 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~------------------~ 258 (546)
...++..+.......++....+-..|.++...|++++|...|...++..|....-+..-.. +
T Consensus 20 ~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~ 99 (517)
T PF12569_consen 20 YEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLEL 99 (517)
T ss_pred HHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence 3456666677777888999999999999999999999999999999876654421111111 1
Q ss_pred HHHHHhhhhhhHHH------------HH-HH--HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy597 259 EDCALRSRKESYDI------------VK-QA--KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323 (546)
Q Consensus 259 ~~~~l~~~~~~~~~------------~~-~~--~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (546)
+......++..... +. .. -....+. ..++.....+-.+|....+..-....+.......
T Consensus 100 y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~------KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l 173 (517)
T PF12569_consen 100 YDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR------KGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSL 173 (517)
T ss_pred HHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhh
Confidence 11111111000000 00 00 0000011 1122333334444443333222222223222221
Q ss_pred HHh--cC-------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 324 EKT--LG-------ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 324 ~~~--~g-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
... +. ..+.....+++.+|..|...|++++|+.+.+++|+. .|..+..|...|.++-..|++.
T Consensus 174 ~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 174 ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHH
Confidence 111 00 112234678899999999999999999999999998 4889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccC---------CChhhH
Q psy597 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG---------DNKPIW 465 (546)
Q Consensus 395 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~---------~~~~~~ 465 (546)
+|..+++.|..+ +...-.+....+..+++.|+.++|...+..-... +.+.... ....+.
T Consensus 246 ~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~----~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 246 EAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE----DVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC----CCCcccCHHHHHHHHHHHHHHH
Confidence 999999999988 7777777777888899999999999877654322 1111111 112233
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 466 QDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 466 ~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
++...|++..|+..|....++|.....
T Consensus 314 a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 477889999999999999888876643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-07 Score=84.71 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+|..|.-++..|+|..|...|..-++. .++.+..+.+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----------------------------------------YP~s~~~~nA~y 182 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----------------------------------------YPNSTYTPNAYY 182 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------------------CCCCcccchhHH
Confidence 899999999999999999999999886 446778899999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+||.+++.+|+|+.|...|..++.-+ +++|..+++++.+|.+...+|+.++|...|+++++.+
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDY-----PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999876 6678889999999999999999999999999999986
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.8e-08 Score=100.47 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=137.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
-++..+.+.-..+..|....+++.|....-.+-+.... ......|..+|..|...+++..|+..|+.+++.
T Consensus 521 LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--- 591 (1238)
T KOG1127|consen 521 LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--- 591 (1238)
T ss_pred CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC---
Confidence 46777788888899999999999998885444433211 122345666899999999999999999999988
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+|....+|..+|.+|...|.+..|++.|.+|..+ +|......+..+.+....|+|.+|+..+...+.
T Consensus 592 -----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 592 -----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999988 888888899999999999999999999998887
Q ss_pred hhhhcccCc---ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 448 RAHEREFGA---CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 448 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.......+. ..........+...|-...|..+++++++.+.-...
T Consensus 659 ~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 659 AFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 654322111 111112222245556666777777777777654443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.4e-08 Score=85.73 Aligned_cols=114 Identities=21% Similarity=0.358 Sum_probs=92.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....+..+.+++.+|..+...|++++|+.+|++++...+ +.+....++.++|.++...|++++|+.++.+++...
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 335677788899999999999999999999999998752 334456789999999999999999999999999984
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcC
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSK-------YEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~eA~~~~~~al~~~~~~~~ 412 (546)
|.....+..+|.++...|+ ++.|+..|.++++.++....
T Consensus 103 --------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 103 --------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred --------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 6667788888988887665 56666666666666555543
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-06 Score=86.13 Aligned_cols=145 Identities=21% Similarity=0.201 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------- 365 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------- 365 (546)
+..+.|.++.++.++|+..++-+ + +....++...|.+++++|+|++|...|+..++..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~-~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL-D----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc-c----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 67788888888888888887721 1 1113456677888888899999998888764321
Q ss_pred ------------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHH
Q psy597 366 ------------EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS-------NVAKTKNNLA 426 (546)
Q Consensus 366 ------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~-------~~~~~~~~La 426 (546)
.+.......+....++|.|.++...|+|.+|++.+++|+.+++..+..++. ....+...|+
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 011111223366789999999999999999999999999999887654332 2456778899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.++..+|+.++|...|...+...+.+
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998866543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-08 Score=82.57 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|..+...|++++|+..|.+++... ++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 568899999999999999999999998764 4445557789999999999999999999999999875 444
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+....++..+|.++...|++++|+.++.++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 556788999999999999999999999999998
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-08 Score=81.24 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++.+|..+...|++++|+..|.+++.. .++++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------------~~~~~~~~~ 40 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----------------------------------------YPKSTYAPN 40 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------------------------------CCCccccHH
Confidence 357899999999999999999999999874 234455577
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+++.+|.++...|+++.|+.+|++++... ++++....++..+|.++...|++++|+.++.+++...
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 89999999999999999999999999875 4455567789999999999999999999999999885
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-06 Score=82.99 Aligned_cols=212 Identities=15% Similarity=0.071 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..-+.+-..+|+++.|-.++.++-+.. +++ ........+.+....|+++.|.....++++.. |
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~-~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------p 184 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELA------GDD-TLAVELTRARLLLNRRDYPAARENVDQLLEMT--------P 184 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccC------CCc-hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------c
Confidence 34444455555566666666665555441 111 12344455555666666666666666555552 4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHhcCC---------------CChHHHH
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEI-------------------YELKLGP---------------DDSNVAK 420 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------------------~~~~~~~---------------~~~~~~~ 420 (546)
....++.....+|...|++.+...++.+.-+- .++...+ .-...+.
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~ 264 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE 264 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh
Confidence 44444455555555555555555444322110 0000000 0111234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc---------------------------cCcccCCChhhHHHHhhchh
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHERE---------------------------FGACDGDNKPIWQDRQKNKA 473 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 473 (546)
....++.-+...|++++|.+..+++++...+.. .........+|..+...+.+
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 445567778899999999999999987533211 01112233344556666677
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 474 KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 474 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.+|..+++.|++. ......+..+|.++.++|+..+|...+++++.+..
T Consensus 345 ~kA~~~leaAl~~---------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 345 GKASEALEAALKL---------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHHhc---------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 7777777766654 22345666777777777777777777777775543
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=85.87 Aligned_cols=178 Identities=19% Similarity=0.135 Sum_probs=121.4
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
+...+...|.+...+..+|.||+...+|..|..+|++.-.
T Consensus 33 l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---------------------------------------- 72 (459)
T KOG4340|consen 33 LGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---------------------------------------- 72 (459)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------------------
Confidence 3334455566666777777777777777777777776654
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.+|.........+..++..+.+..|+.......+ ++.....++..-+.+.+..+++..+..+.++.
T Consensus 73 ----l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-- 138 (459)
T KOG4340|consen 73 ----LHPELEQYRLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-- 138 (459)
T ss_pred ----hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc--
Confidence 3455555555566666777777776665544332 12223344445555666666666655544331
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
. ....+...++.|.+.++.|++++|+.-|+.|++. ....+..-++++.+.+..|+++.|+++..
T Consensus 139 -----p---~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 139 -----P---SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred -----c---CCCccchhccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 1 1245778899999999999999999999999998 33444556889999999999999999999
Q ss_pred HHHHhhhh
Q psy597 444 QVLTRAHE 451 (546)
Q Consensus 444 ~al~~~~~ 451 (546)
+++...-.
T Consensus 203 EIieRG~r 210 (459)
T KOG4340|consen 203 EIIERGIR 210 (459)
T ss_pred HHHHhhhh
Confidence 98886543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=98.34 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+...|..++..|+|++|+.+|.+++.+ .|....++.++|.+|...|++++|+..+++++.+. |.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cC
Confidence 556788899999999999999999987 34457789999999999999999999999999984 77
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
...+++++|.+|...|++++|+.+|++++.+ .|....+...++.|....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999998 677777777787776555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-07 Score=89.24 Aligned_cols=152 Identities=22% Similarity=0.121 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+....+.+..+..++..|++++|...+...+.. .|.....+...+.++...++.++|.+.+++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD---- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----
Confidence 566778999999999999999999999997655 45556778888999999999999999999999984
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
|.......++|..|.+.|++.+|+..+++.+.- +|..+..|..||..|..+|+..+|...+.+....
T Consensus 371 ----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~- 437 (484)
T COG4783 371 ----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL- 437 (484)
T ss_pred ----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh-
Confidence 777899999999999999999999999998876 8888999999999999999999999888777654
Q ss_pred hhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
.|++..|+..+..|.+.
T Consensus 438 --------------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 --------------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------------CCCHHHHHHHHHHHHHh
Confidence 57777887777777655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.6e-08 Score=95.42 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+...|..++..|+|++|+.+|.+++... |....++.++|.+|...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 5567888999999999999999999984 777889999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+++.+|.+|..+|++++|+..|++++.+.+.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999999987543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.8e-08 Score=74.97 Aligned_cols=83 Identities=34% Similarity=0.483 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
.|+|+.|+.+++++++.. +..+ ....++.+|.+|+..|++++|+.++++ ... ++....+...+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 689999999999999986 2123 566778899999999999999999999 554 5556777888899
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~a 445 (546)
++..+|++++|+..|+++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-06 Score=81.98 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
+...+-..+|.|++..|+|++|...|.-+.+ .....
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--------------------------------------------~~~~~ 90 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--------------------------------------------KDDAP 90 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--------------------------------------------cCCCC
Confidence 3345667789999999999999999977655 11222
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHH----------HHHhcCCCCH----------HHHHHHHHHHHHHHHcCCHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTI----------REKTLGENHA----------AVAATLNNLAVLYGKRGKYK 352 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~g~~~~----------~~~~~~~~la~~~~~~g~~~ 352 (546)
+..+.++|.+++..|.|.+|...-.++-+. ..+. ++.. ....-...||.+.+..-.|+
T Consensus 91 ~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl--ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 91 AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL--NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Confidence 445667777777777777777665554211 0000 1100 11122344555556666677
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
+|++.|.+++.- +|.....-.++|.||+++.-|+-+-+.+.--+.. .|+...+.+..+...++.
T Consensus 169 eAIdvYkrvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 169 EAIDVYKRVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhh
Confidence 777777666644 3666666666777777777776666655555444 455555555555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-08 Score=72.01 Aligned_cols=66 Identities=33% Similarity=0.511 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-KYKEAEILYKQVLTRAH 450 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-~~~eA~~~~~~al~~~~ 450 (546)
+.++..+|.++...|++++|+.+|.+++++ +|..+.+++++|.+|..+| ++++|+..+++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 568899999999999999999999999999 8999999999999999999 79999999999998743
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-07 Score=75.16 Aligned_cols=102 Identities=34% Similarity=0.323 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
++++.+|.++-..|+.++|+++|++++.. +.+.+....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----------------------------------------gL~~~~~~~a 40 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----------------------------------------GLSGADRRRA 40 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------------CCCchHHHHH
Confidence 56889999999999999999999999884 4456677789
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
+..+|..+...|++++|+..+++++..+ ++++........++.++...|++++|+..+-.++.
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEF-----PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998754 44444566677788999999999999999988774
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-05 Score=71.40 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=146.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
....+..|..-+.+|....+|++|...+.+|.+..+... ...
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------------------------------------slf 68 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------------------------------------SLF 68 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------------------------------------cHH
Confidence 345567788888899999999999999999998665543 345
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.++-..|.+......+.++..+|++|..++.+. +.....+.++-. +--....-++++|+.+|++++.+.+..
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~--GspdtAAmaleK-Aak~lenv~Pd~AlqlYqralavve~~-- 143 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC--GSPDTAAMALEK-AAKALENVKPDDALQLYQRALAVVEED-- 143 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCcchHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHhcc--
Confidence 566778888888889999999999999999999886 332233444444 444456679999999999999998653
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+........+...+.++....+|++|-..+.+-..+.... ...+.....+.....+|+-..+|..|..+|+..-++
T Consensus 144 dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~--~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 144 DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC--DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH--hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 2234455667778899999999999999998877776555 224445556666777788888999999999887654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-08 Score=75.67 Aligned_cols=97 Identities=42% Similarity=0.548 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
++..+|.++...|++++|+.++.+++... |....++..+|.++...|++++|+.+|++++.. .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 57889999999999999999999999874 445578899999999999999999999999987 45
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
....++..+|.++...|++++|..++.+++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 555789999999999999999999999988753
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-07 Score=74.26 Aligned_cols=102 Identities=28% Similarity=0.203 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|.++...|+.++|+.+|++++.. |.+.+....++..+|..+...|++++|+..+++++... +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46788999999999999999999999874 34556667889999999999999999999999988764 333
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
+........++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33666677788899999999999998877765
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-06 Score=84.84 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-- 367 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 367 (546)
......|...|..|...|+.+.|...|+++...-= +.-...+.+|...|..-....+++.|..+.++|...-..
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 34567888999999999999999999999987621 113456889999999999999999999999998754211
Q ss_pred --hcCCCChHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 368 --VLGKEHPDV------AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 368 --~~~~~~~~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
.+.+.+|.. ..+|..++.+....|-++.-...|++.+++ ....+....|.|..+....-+++|.
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL--------riaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL--------RIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 112223332 345666677777888888888889998887 4455667788888888888899999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHH--------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQ--------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK-TKNNLASCYL 510 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~-~~~~La~~y~ 510 (546)
+.|++.+.+++-.. ..-.|. -....+.+.|...|++|++.+ .|.... .+...+.+-.
T Consensus 532 k~YErgI~LFk~p~-------v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 532 KAYERGISLFKWPN-------VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHcCCccCCCcc-------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHH
Confidence 99999888765321 122222 223345667777777777642 344433 4445566666
Q ss_pred HcCCHHHHHHHHHHHHHH
Q psy597 511 KQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~ 528 (546)
.-|--..|+..|++|-..
T Consensus 598 e~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATSA 615 (835)
T ss_pred HhhHHHHHHHHHHHHHhc
Confidence 778888888888876543
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-07 Score=99.10 Aligned_cols=200 Identities=22% Similarity=0.218 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
...-....|......|.+.+|.+ ..+++..+.... +..++..+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~------------------------------------~~~h~~~~ 973 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM------------------------------------GVLHPEVA 973 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh------------------------------------hhcchhHH
Confidence 34455666777778889998888 777777766555 55789999
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..+..++.++...|++++|+..-.++.-+.++..|.+++.....+.+++...+..++...|...+.++..+..-.+|+++
T Consensus 974 ~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~h 1053 (1236)
T KOG1839|consen 974 SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDH 1053 (1236)
T ss_pred HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|..+....+++.++...++++.|+++.+.|+.+.....++..-..+.++..++..+...+++..|....+....++.
T Consensus 1054 P~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1054 PPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred CchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999888888999999999999999999999988888877544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=72.52 Aligned_cols=83 Identities=30% Similarity=0.386 Sum_probs=68.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
+|+|+.|+.+|++++...+ ..+ ....++.+|.+|+..|+|++|+.++++ .... +........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence 6899999999999999852 223 566788899999999999999999999 5443 555677778899
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy597 386 LCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~a 403 (546)
++..+|++++|+..|+++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.2e-06 Score=72.78 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=122.2
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
....+.+..+..-|..|....++..|-..|.++.+...+. ++....+.+|...+.+|.+ +++.+|+.+++++++++.
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYT 104 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999999988776 4555567777777777755 599999999999999985
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.. +.-...+.-+..+|.+|... .++++|+.+|+++-+.+..- ......-.++...|..-...++|.+|+..|+++
T Consensus 105 ~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 105 DM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred hh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 22233455567899999865 89999999999999987643 112334456677777788899999999999998
Q ss_pred HHhhh
Q psy597 446 LTRAH 450 (546)
Q Consensus 446 l~~~~ 450 (546)
....-
T Consensus 181 a~~s~ 185 (288)
T KOG1586|consen 181 ARSSL 185 (288)
T ss_pred HHHhc
Confidence 77543
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=87.32 Aligned_cols=143 Identities=23% Similarity=0.274 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH-------AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.+......|..|+..|+|..|...|++|+.......+.+. .....++.|++.++.++++|.+|+..+.++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3455667799999999999999999999998764322221 123467999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYK 443 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~~~~ 443 (546)
.|....+++..|.++...|+|+.|+..|++++++ .|.+-.+...|..+..+..++.+. .+.|.
T Consensus 287 --------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 287 --------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred --------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999999 788888888888888777766544 78888
Q ss_pred HHHHhhh
Q psy597 444 QVLTRAH 450 (546)
Q Consensus 444 ~al~~~~ 450 (546)
.++....
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 8887654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=73.56 Aligned_cols=98 Identities=39% Similarity=0.526 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 458 (546)
++.++|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------- 64 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------- 64 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 4678999999999999999999999987 45555788999999999999999999999888752
Q ss_pred CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 459 GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 459 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
|....++..+|.++...|++++|..++.++++..|
T Consensus 65 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 65 -------------------------------------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------------------------------------CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 22336778899999999999999999999987654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=69.81 Aligned_cols=64 Identities=31% Similarity=0.518 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~ 406 (546)
+.++..+|.++...|+|++|+.+|.+++++ +|....+++++|.++..+| ++++|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568999999999999999999999999999 4889999999999999999 799999999999997
|
... |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0001 Score=72.09 Aligned_cols=305 Identities=14% Similarity=0.096 Sum_probs=185.4
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
..+...+..+...|...+.+-+.......|..++.+|+.++|+.. |....+..++...+...++...
T Consensus 97 ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 97 ERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 334444456667888888888888888999999999988877654 4555566666555543333222
Q ss_pred HHHHH----------HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy597 272 IVKQA----------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL 341 (546)
Q Consensus 272 ~~~~~----------~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~l 341 (546)
..... .+..++.+-.-.||.. ..|...+..-...|+..-|...|+.|++.. .++......+...
T Consensus 177 W~sfI~fElRykeieraR~IYerfV~~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~-----~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 177 WLSFIKFELRYKEIERARSIYERFVLVHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFL-----GDDEEAEILFVAF 250 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHheecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----hhHHHHHHHHHHH
Confidence 21111 1112222223345544 457777888888999999999999999886 3344444555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH---------------HHhcCC---------------------CChHHHHHHHHHHH
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIR---------------EKVLGK---------------------EHPDVAKQLNNLAL 385 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~---------------------~~~~~~~~~~~la~ 385 (546)
|..-..+..++.|...|+-|++.. ++.+|+ ++|....+|..+-.
T Consensus 251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylr 330 (677)
T KOG1915|consen 251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLR 330 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHH
Confidence 666667777888888777776542 222222 24555566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhhhcccCcccC
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDS-----NVAKTKNNLASC-YLKQGKYKEAEILYKQVLTRAHEREFGACDG 459 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~-----~~~~~~~~La~~-y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 459 (546)
+-...|+.+.-.+.|++|+.-. +|-.. .....|.|.+.. -+...+.+.+...|+.++++.|...+.-...
T Consensus 331 L~e~~g~~~~Ire~yErAIanv----pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKi 406 (677)
T KOG1915|consen 331 LEESVGDKDRIRETYERAIANV----PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKI 406 (677)
T ss_pred HHHhcCCHHHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHH
Confidence 6677788888888888887641 00000 111222222211 1245666677777777776655433221111
Q ss_pred CC---------------------------------hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy597 460 DN---------------------------------KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLA 506 (546)
Q Consensus 460 ~~---------------------------------~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La 506 (546)
.. ..+-.....+.++.....|++-+.. +|....++...|
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kya 478 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYA 478 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHH
Confidence 10 1111133445555555555555544 788888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy597 507 SCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 507 ~~y~~~g~~~~A~~~~~~al~ 527 (546)
.+-..+|+.+.|...|+-|+.
T Consensus 479 ElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999998876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=85.88 Aligned_cols=153 Identities=24% Similarity=0.218 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|....+++..+..++..|++++|...+...+. ..|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------------------------------------------~~P~ 338 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA--------------------------------------------AQPD 338 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHH--------------------------------------------hCCC
Confidence 67778899999999999999999999998766 5677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..+...+.++...++..+|.+.+++++... |.......++|.+|...|++++|+..+.+.+..
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~------- 403 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALD--------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN------- 403 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------
Confidence 78888899999999999999999999999883 444677899999999999999999999998766
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
.|..+..|..||..|..+|+..+|...+ +..|...|+++.|+..+..+.+..
T Consensus 404 -~p~dp~~w~~LAqay~~~g~~~~a~~A~-------------------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 404 -DPEDPNGWDLLAQAYAELGNRAEALLAR-------------------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -CCCCchHHHHHHHHHHHhCchHHHHHHH-------------------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4888999999999999999877665444 455666888888888888887753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-05 Score=75.36 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
.-++..-+...-..|+++.|-.++.++-+. . ......
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~------------------------------------------~-~~~~l~ 154 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAEL------------------------------------------A-GDDTLA 154 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcc------------------------------------------C-CCchHH
Confidence 345555566667777777777777766552 1 122233
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR--------- 365 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------- 365 (546)
+...++.+....|+++.|..-..+++.. .|....++.....+|...|+|.....+..+..+..
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 4556667777777777777777777665 33335556666677777777776666655432210
Q ss_pred ----------HHhcC-C----------CCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------Hhc
Q psy597 366 ----------EKVLG-K----------EHP----DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE---------LKL 411 (546)
Q Consensus 366 ----------~~~~~-~----------~~~----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~---------~~~ 411 (546)
.+... . +-| ..+.....++.-+...|++++|.+..+++++... ...
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~ 306 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLR 306 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcC
Confidence 00000 0 001 1133445567777889999999999988876321 000
Q ss_pred C--------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHH
Q psy597 412 G--------------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNRE 477 (546)
Q Consensus 412 ~--------------~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 477 (546)
+ ..+|+.+..+..||.+|++.+.|.+|..+|+.+++..++. ......+..+...|+...|.
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAE 381 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHH
Confidence 0 1144556788999999999999999999999999864432 34455667788999999999
Q ss_pred HHHHHHHHHH
Q psy597 478 KYYQRALEIY 487 (546)
Q Consensus 478 ~~~~~Al~~~ 487 (546)
..+++++..+
T Consensus 382 ~~r~e~L~~~ 391 (400)
T COG3071 382 QVRREALLLT 391 (400)
T ss_pred HHHHHHHHHh
Confidence 9999998553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-08 Score=92.05 Aligned_cols=237 Identities=22% Similarity=0.204 Sum_probs=139.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..+........+.++|..+|+++..+.-.. ......-.+...+...+.......... ........ ....
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~-------~~~~~~l~av~~la~y~~~~~~~e~~l---~~l~~~~~-~~~~ 98 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIK-------KSSSPELQAVRLLAEYLSSPSDKESAL---EELKELLA-DQAG 98 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS--------TTSSCCCHHHHHHHHHHCTSTTHHCHH---HHHHHCCC-TS--
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhc-------cCCChhHHHHHHHHHHHhCccchHHHH---HHHHHHHH-hccc
Confidence 345567788888999999999876554331 112222223222222222111111111 11111111 1112
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....+....|.++...|++++|+..+.+.- + ..+......+|...++++.|.+.++.+.+.
T Consensus 99 ~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~----------~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----- 160 (290)
T PF04733_consen 99 ESNEIVQLLAATILFHEGDYEEALKLLHKGG----------S---LELLALAVQILLKMNRPDLAEKELKNMQQI----- 160 (290)
T ss_dssp -CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT----------C---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHccC----------c---ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 2334556677888888999999988886541 1 344556678899999999999888876544
Q ss_pred CCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQS--KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
..+...+....+++....| ++.+|..+|++..+. .+..+.+++.+|.++..+|+|++|...+.+++.
T Consensus 161 ---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 161 ---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp ---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred ---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2334444444555555555 689999999886443 345667788999999999999999999888876
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY-KEAEILYKQVL 526 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~-~~A~~~~~~al 526 (546)
. +|..+.++.+++.+....|+. +.+.+++.+..
T Consensus 230 ~----------------------------------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 230 K----------------------------------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp C-----------------------------------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred h----------------------------------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 4 344455666677776777766 44555665555
Q ss_pred HHhhhh
Q psy597 527 TRAHER 532 (546)
Q Consensus 527 ~~~~~~ 532 (546)
...|..
T Consensus 264 ~~~p~h 269 (290)
T PF04733_consen 264 QSNPNH 269 (290)
T ss_dssp HHTTTS
T ss_pred HhCCCC
Confidence 555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-07 Score=84.31 Aligned_cols=103 Identities=13% Similarity=0.160 Sum_probs=91.5
Q ss_pred HHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 294 TMLNILALVY-RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 294 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
...+..|..+ ...|+|++|+..|++.+..+ ++++....+++.+|.+|+..|++++|+..|.+++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4456666655 56799999999999999987 5567778899999999999999999999999999987 66
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
++....+++.+|.++...|++++|...|+++++.
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999987
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=94.44 Aligned_cols=200 Identities=21% Similarity=0.201 Sum_probs=153.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.-.++..|-....||...|+..+|..+..+-++. ... +. ....+...........++... ...
T Consensus 420 I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d-----~~--lyc~LGDv~~d~s~yEkawEl--------sn~ 482 (777)
T KOG1128|consen 420 IFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPD-----PR--LYCLLGDVLHDPSLYEKAWEL--------SNY 482 (777)
T ss_pred HHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCc-----ch--hHHHhhhhccChHHHHHHHHH--------hhh
Confidence 3456778888889999999999998888777761 111 01 111111111111111111111 123
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.+...+|......++|.++..+++.++++ .|....+|+.+|.+..+.++++.|...|.+.+.+
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------ 548 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------ 548 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------
Confidence 34456677777778899999999999999988 5777899999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.|+.+.+|+|++..|...|+-.+|...+++|++. +......|-|.-.+....|.+++|+..|.+.+.+..
T Consensus 549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 4999999999999999999999999999999997 455667788888889999999999999999998754
Q ss_pred h
Q psy597 451 E 451 (546)
Q Consensus 451 ~ 451 (546)
.
T Consensus 619 ~ 619 (777)
T KOG1128|consen 619 K 619 (777)
T ss_pred h
Confidence 4
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-06 Score=74.79 Aligned_cols=207 Identities=18% Similarity=0.174 Sum_probs=142.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.-.+...+..++..|..|-..|-+.-|..-|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL- 128 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL- 128 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence 4456778899999999999999999999999999998 4666889999999999999999999999999998
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+|..-.+..|.|..++.-|+|.-|.+-+.+-... .+++|... .|..+- ...-++.+|...+.+-
T Consensus 129 -------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR 192 (297)
T COG4785 129 -------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQR 192 (297)
T ss_pred -------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHH
Confidence 5888889999999999999999999887766553 13333322 121111 2334667777655443
Q ss_pred HHhhhhcccCcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
.....+. ..+|. ....|+... ...++++....+.. ..-.....++++.||..|...|+.++|..+|+
T Consensus 193 ~~~~d~e---------~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 193 AEKSDKE---------QWGWNIVEFYLGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHhccHh---------hhhHHHHHHHHhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3221111 12222 222333321 11222222221100 00023456789999999999999999999999
Q ss_pred HHHHH
Q psy597 524 QVLTR 528 (546)
Q Consensus 524 ~al~~ 528 (546)
-|+.-
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 88763
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-05 Score=78.24 Aligned_cols=254 Identities=11% Similarity=0.117 Sum_probs=178.2
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
.......+|.+-.+|+..-..--..|+.+.-...|++|+...+...
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~---------------------------------- 356 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS---------------------------------- 356 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh----------------------------------
Confidence 3445567788888999988888889999999999999987533221
Q ss_pred cCCCCChhHHHHHHHHHHHHH---HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYR---DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
......-.+|..+-.+++ ...+.+.+...|+.++++.+.. +-..+.+|...|....+..+...|...+-.
T Consensus 357 ---ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk----kFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 357 ---EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK----KFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc----cchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 011112223333333333 3578899999999999986432 556788899999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
|+..+ |. ...+-..-.+-.++++++.....|++-++. +|....+|...|.+-..+|+.+.|..
T Consensus 430 AIG~c--------PK-~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 430 AIGKC--------PK-DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HhccC--------Cc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 99886 32 233344445666788999999999999988 99999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHH-------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQ-------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL--- 510 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~--- 510 (546)
.|.-|+.... ....... ....|.+..|...|++.++. .+ ...++...|..-.
T Consensus 493 ifelAi~qp~---------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--------t~-h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 493 IFELAISQPA---------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--------TQ-HVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHhcCcc---------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--------cc-cchHHHhHHHHhcccc
Confidence 9998887421 1111122 34455555666666555543 11 1224444443333
Q ss_pred --HcC-----------CHHHHHHHHHHHHHHhhhhc
Q psy597 511 --KQG-----------KYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 511 --~~g-----------~~~~A~~~~~~al~~~~~~~ 533 (546)
..| +...|...|++|....++..
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 445 67788888888888776543
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-06 Score=77.20 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=120.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|.....+..+|.+|+...+|..|..+|++.-.. .|.........+..++..+.+..|+.........
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~--- 107 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN--- 107 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---
Confidence 34555566888899999999999999999887766 5666777777888888888988888776655432
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+.....+...-+-+.+..+++..+....++.- ..+.+.+..+.|.+.++.|+++.|+.-|+.+++
T Consensus 108 -----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 108 -----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred -----HHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 12233444455666677777777665554321 124567788889899999999999988888887
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
.. ...+-.-++++.++++.|+++.|+++..+.++
T Consensus 173 vs----------------------------------------------GyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 173 VS----------------------------------------------GYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred hc----------------------------------------------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 41 11223446788888888888888888777766
Q ss_pred Hh
Q psy597 528 RA 529 (546)
Q Consensus 528 ~~ 529 (546)
..
T Consensus 207 RG 208 (459)
T KOG4340|consen 207 RG 208 (459)
T ss_pred hh
Confidence 44
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-05 Score=70.43 Aligned_cols=186 Identities=22% Similarity=0.237 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
-+..++.-|......|+|++|+..|+.+.... +..|....+...++.++++.+++++|+...++-+... +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 46678999999999999999999999988654 5567778899999999999999999999999999997 7
Q ss_pred CChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH--------------HHHHHHHc
Q psy597 372 EHPDVAKQLNNLALLCQNQ-----SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN--------------LASCYLKQ 432 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------La~~y~~~ 432 (546)
.||+...+++..|.+++.. .|...+...+...-++..+. |+++....+... +|..|.+.
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr 180 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR 180 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999987652 34444444444444443333 444444433332 34444455
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
|.+-.|+..++.+++ -+ ++.+....++..+..+|...
T Consensus 181 ~~~~AA~nR~~~v~e--------------------------------------~y-----~~t~~~~eaL~~l~eaY~~l 217 (254)
T COG4105 181 GAYVAAINRFEEVLE--------------------------------------NY-----PDTSAVREALARLEEAYYAL 217 (254)
T ss_pred cChHHHHHHHHHHHh--------------------------------------cc-----ccccchHHHHHHHHHHHHHh
Confidence 555555444444444 32 22456677888899999999
Q ss_pred CCHHHHHHHHHHHHHHhhhh
Q psy597 513 GKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 513 g~~~~A~~~~~~al~~~~~~ 532 (546)
|-.++|...-.-.-.-.|+.
T Consensus 218 gl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 218 GLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred CChHHHHHHHHHHHhcCCCC
Confidence 99999987655433333333
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-06 Score=82.32 Aligned_cols=108 Identities=22% Similarity=0.185 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH-------PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
+.....-|..|++.|+|..|...|++++.......+.+. .....++.|++.++.++++|.+|+....++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 445567789999999999999999999988753322221 123467899999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 408 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|.+..+++.-|.++..+|+|+.|+..|++++++.|
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999744
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-06 Score=93.74 Aligned_cols=200 Identities=24% Similarity=0.226 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.-....|......|.+.+|.+ ..+++.+.....|.-+|..+..|..++.++...|++++|+.+..++.-+.++..|.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 34445566777777889999999 88899898888888899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
++|.....+.+++...+..++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+.+.+.|+....
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~- 1088 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK- 1088 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999988888899999999999999999999999999999999887421
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+..++..-....++..+++++...+++..|....+....+++
T Consensus 1089 -------------------------------------~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1089 -------------------------------------KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred -------------------------------------hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 222233344455555666666666666666666666666554
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.5e-06 Score=79.05 Aligned_cols=202 Identities=20% Similarity=0.176 Sum_probs=119.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHH
Q psy597 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY 303 (546)
Q Consensus 224 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 303 (546)
-+....+|..|+.+++-.+.. +.......-.++|.++
T Consensus 31 dfls~rDytGAislLefk~~~-------------------------------------------~~EEE~~~~lWia~C~ 67 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL-------------------------------------------DREEEDSLQLWIAHCY 67 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc-------------------------------------------chhhhHHHHHHHHHHH
Confidence 355678999999988776642 2222345567789999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
+..|+|++|...|.-+... .+.| +..+.+||.+++.+|.|.+|.....++- +.|.....+.++
T Consensus 68 fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vnLAcc~FyLg~Y~eA~~~~~ka~---------k~pL~~RLlfhl 130 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNK------DDAP--AELGVNLACCKFYLGQYIEAKSIAEKAP---------KTPLCIRLLFHL 130 (557)
T ss_pred HhhccHHHHHHHHHHHhcc------CCCC--cccchhHHHHHHHHHHHHHHHHHHhhCC---------CChHHHHHHHHH
Confidence 9999999999999887763 2333 6678899999999999999998777653 235555555554
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChh
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 463 (546)
+. +.|+-++-..+- ..+. +...-...||.+.+..-.|++|++.|++++.-.++- .......
T Consensus 131 ah---klndEk~~~~fh-~~Lq-----------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey----~alNVy~ 191 (557)
T KOG3785|consen 131 AH---KLNDEKRILTFH-SSLQ-----------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY----IALNVYM 191 (557)
T ss_pred HH---HhCcHHHHHHHH-HHHh-----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh----hhhHHHH
Confidence 43 334433322222 2211 111233456666666667777777777777543221 1122233
Q ss_pred hHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
+.++....-++-+.+.+.-.+.. .|+...+....+..+++.
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q--------~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhh
Confidence 34444444444443333332222 444555555556555554
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-05 Score=78.44 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=109.5
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH----hcCCCCHH------HHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK----TLGENHAA------VAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~g~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+.+.+|..-|..-....+++.|..+.++|...-.. .+.+..|. ...+|...+......|-++.....|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3566888999999999999999999999998875322 11222332 2356677788888889999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH---HHHHcCCH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS---CYLKQGKY 435 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~---~y~~~g~~ 435 (546)
.+.+++. -..+..-.|.|..+....-+++|.+.|++.+.++. .|.....|+..-. --+.--+.
T Consensus 501 driidLr--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 501 DRIIDLR--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHHHHHh--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccHHHHHHHHHHHHHHHhcCCCH
Confidence 9999986 44456667889999888899999999999988842 4555555544332 22333467
Q ss_pred HHHHHHHHHHHHhhhh
Q psy597 436 KEAEILYKQVLTRAHE 451 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~ 451 (546)
+.|..+|+++++.+|.
T Consensus 567 EraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHHhcCCH
Confidence 8999999999987653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-07 Score=66.56 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+.+|..+...|++++|+..|+++++. .|....++..+|.++..+|++++|+.+|+++++..|.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35799999999999999999999987 89999999999999999999999999999999987653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6e-06 Score=85.76 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 215 LRTLHNLVIQYASQGR---YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+-.++..|..|...++ +..|+.+|++|++ .+|+
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--------------------------------------------ldP~ 374 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--------------------------------------------SEPD 374 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------------------------------------hCCC
Confidence 3345667777776655 7789999999988 3677
Q ss_pred HHHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNK--------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.+.++..++.+|..... ...+.....+++.+ +..+..+.++..+|..+...|++++|...+++|+.
T Consensus 375 ~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~ 448 (517)
T PRK10153 375 FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAID 448 (517)
T ss_pred cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777765432 23334444443332 22333357788889999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+. |. ..+|..+|.++...|++++|+..|++|+.+
T Consensus 449 L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 449 LE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 94 53 679999999999999999999999999998
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-05 Score=69.29 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..|+.-|......|+|++|+..|+.+... .+..|....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----------------------------------------~p~s~~~~q 72 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----------------------------------------HPFSPYSEQ 72 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------------CCCCcccHH
Confidence 467899999999999999999999887753 335667788
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----CCH---HHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-----GKY---KEAEPLCKRALEIRE 366 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~al~~~~ 366 (546)
+...++.+++..++++.|+..+++-+.++ +.+|....+++..|.+++.. .+. ..|..-|+..+..+
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry- 146 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY- 146 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-
Confidence 99999999999999999999999999997 66788888899888887653 233 34555555555544
Q ss_pred HhcCCCChHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 367 KVLGKEHPDVAK--------------QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 367 ~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
++++.... --..+|..|.+.|.+..|+..++..++-+ ++.+....++..+..+|..+
T Consensus 147 ----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~l 217 (254)
T COG4105 147 ----PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYAL 217 (254)
T ss_pred ----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHh
Confidence 33332222 22356889999999999999999999875 34566778899999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVL 446 (546)
Q Consensus 433 g~~~eA~~~~~~al 446 (546)
|-.++|...-.-.-
T Consensus 218 gl~~~a~~~~~vl~ 231 (254)
T COG4105 218 GLTDEAKKTAKVLG 231 (254)
T ss_pred CChHHHHHHHHHHH
Confidence 99999987654433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-06 Score=87.56 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHH
Q psy597 292 VATMLNILALVYRDQ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY--------KEAEPLCKR 360 (546)
Q Consensus 292 ~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~ 360 (546)
.+.-++..|..|... +.+..|+.+|++|+++ +|..+.++..++.+|.....+ ..+.....+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455566777777654 4488999999999998 566677888877777654332 233333333
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++.+ +..+..+.++..+|..+...|++++|...+++|+++ .|. ..+|..+|.++...|++++|++
T Consensus 410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 3332 112444578888999999999999999999999998 564 6799999999999999999999
Q ss_pred HHHHHHHhhhhc
Q psy597 441 LYKQVLTRAHER 452 (546)
Q Consensus 441 ~~~~al~~~~~~ 452 (546)
.|++++.+.|..
T Consensus 475 ~~~~A~~L~P~~ 486 (517)
T PRK10153 475 AYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHhcCCCC
Confidence 999999986543
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-05 Score=85.24 Aligned_cols=260 Identities=16% Similarity=0.084 Sum_probs=187.3
Q ss_pred hhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHH
Q psy597 198 PSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277 (546)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 277 (546)
|+....+......+|+..-.|...-..+...++.++|...+++||....-..
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE---------------------------- 1492 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE---------------------------- 1492 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----------------------------
Confidence 3444556666677888888998888888999999999999999997431100
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPL 357 (546)
Q Consensus 278 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 357 (546)
....-....+|.++-. .-|.-+.-.+.|++|.+.+ ++ ...+..|..+|...+.+++|.++
T Consensus 1493 --------eeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqyc-------d~--~~V~~~L~~iy~k~ek~~~A~el 1552 (1710)
T KOG1070|consen 1493 --------EEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYC-------DA--YTVHLKLLGIYEKSEKNDEADEL 1552 (1710)
T ss_pred --------hHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhc-------ch--HHHHHHHHHHHHHhhcchhHHHH
Confidence 1111222333343333 3455667788889988875 22 44688899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
++..++.+ ......|..+|..+..+.+-+.|...+.+|+.... ...........|.+-++.|+.+.
T Consensus 1553 l~~m~KKF--------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP------k~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1553 LRLMLKKF--------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP------KQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHHHHHh--------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc------hhhhHHHHHHHHHHHhhcCCchh
Confidence 99999987 35678899999999999999999999999999732 23366777888999999999999
Q ss_pred HHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-CCHH
Q psy597 438 AEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYK 516 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g~~~ 516 (546)
+..+|+..+..+|... +.+..........++.......|++++.. .-.+.....++..=.-|.+. |+-+
T Consensus 1619 GRtlfEgll~ayPKRt----DlW~VYid~eik~~~~~~vR~lfeRvi~l------~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRT----DLWSVYIDMEIKHGDIKYVRDLFERVIEL------KLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hHHHHHHHHhhCccch----hHHHHHHHHHHccCCHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHhcCchh
Confidence 9999999998766532 34444555566778888888999998876 22455555555544444443 6655
Q ss_pred HHHHHHHHHHHHh
Q psy597 517 EAEILYKQVLTRA 529 (546)
Q Consensus 517 ~A~~~~~~al~~~ 529 (546)
.....=.+|.+..
T Consensus 1689 ~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1689 NVEYVKARAKEYV 1701 (1710)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555666544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-07 Score=64.89 Aligned_cols=63 Identities=29% Similarity=0.438 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
.+|..++..|++++|+..|++++.. .|....++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----------------------------------------------~P~~~~a~~ 35 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----------------------------------------------DPDNPEAWY 35 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----------------------------------------------STTHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------------------CCCCHHHHH
Confidence 4677888888888888888887764 688899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 504 NLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+|.++..+|++++|+.+|+++++..|++
T Consensus 36 ~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 36 LLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999998765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=82.75 Aligned_cols=165 Identities=24% Similarity=0.235 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
+.-.....|.++...|++++|+..+.+. ...
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------------------------------------------~~l 131 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-------------------------------------------------GSL 131 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------------------------------------------TCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------------------------------------------Ccc
Confidence 4455677778888899999988887542 123
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+......+|...++++.|.+.++.+-+. .++. .-+....|++....| ++.+|.-+|++..+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~------~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------- 196 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI------DEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------- 196 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC------SCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-------
Confidence 44556678899999999999988876544 2222 222333344444455 699999999986543
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY-KEAEILYKQVLTRAH 450 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~-~eA~~~~~~al~~~~ 450 (546)
.+..+..++.+|.++..+|+|++|...+.+++.. +|..+.++.|++.+....|+. +.+.+++.+.....|
T Consensus 197 -~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 197 -FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred -cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 2556778999999999999999999999998865 677888999999999999998 556667777666544
Q ss_pred h
Q psy597 451 E 451 (546)
Q Consensus 451 ~ 451 (546)
.
T Consensus 268 ~ 268 (290)
T PF04733_consen 268 N 268 (290)
T ss_dssp T
T ss_pred C
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00015 Score=65.12 Aligned_cols=235 Identities=20% Similarity=0.223 Sum_probs=167.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.++....+..|..-+.+|....+|++|...+.+|.+-++.. ...-..+.++-..|.+...+..+.++..+|++|..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44566677888888999999999999999999999887765 3444557788889999999999999999999999998
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.+... |+.+..-...+--....-++++|+.+|++++.+.+.- .........+...++++.+..+|.+|-..+.+-
T Consensus 102 ~E~Gs---pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VECGS---PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHhCC---cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 77632 4444444444444556789999999999999997654 223445667788899999999999998888775
Q ss_pred HHhhhhcc-c-CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 446 LTRAHERE-F-GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 446 l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
........ . .........+..+....++..|...|+..-++ .+-..+....++.+|-..| ..|+.++....+.
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 55433211 1 11111222334456667777777777766554 2233567778888887777 5788888877766
Q ss_pred HHHHHhhhh
Q psy597 524 QVLTRAHER 532 (546)
Q Consensus 524 ~al~~~~~~ 532 (546)
.-.-..-++
T Consensus 252 sp~~r~MDn 260 (308)
T KOG1585|consen 252 SPTVRNMDN 260 (308)
T ss_pred ChHhhhhhH
Confidence 544444344
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=78.71 Aligned_cols=105 Identities=22% Similarity=0.229 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
.++.|.-++..|+|..|..-|..-+..+ ++.+....+++.||.+++.+|+|+.|...|..++.-+ |++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 3444555567899999999999999887 6778889999999999999999999999999998863 67888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.+++++.||.+...+|+.++|...|+++++.+|..
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999987754
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=72.07 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++......+..|.-++..|++++|..+|+-..-. +|.....+..||.++..+++|++|+..|..|..+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---- 100 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---- 100 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 5566778889999999999999999999887765 3666778899999999999999999999999988
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+++.+...+..|.||+.+|+...|...|..++..
T Consensus 101 ----~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 101 ----LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ----ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 5555666889999999999999999999999873
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-05 Score=61.53 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...+-.-|......|+.+.|++.|.+++.+. |..+.+|+|.+..+.-+|+.++|+.-+.+|+++. |+.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 3455667888999999999999999999997 8889999999999999999999999999999983 344
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
......++...|.+|..+|+-+.|..-|+.+-.+
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5667788999999999999999999999998876
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00029 Score=62.86 Aligned_cols=195 Identities=15% Similarity=0.087 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
.+-.+.+..-|..|....+|..|=..|.++-+...+.+ +..+
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--------------------------------------skhD 72 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--------------------------------------SKHD 72 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--------------------------------------Cchh
Confidence 44455666666666666667777666666666544433 4566
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+..|...+.+|... +..+|+.+++++++++... +.-...+..+..+|.+|..- .++++|+.+|+++-+.+..-
T Consensus 73 aat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e-- 147 (288)
T KOG1586|consen 73 AATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE-- 147 (288)
T ss_pred HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--
Confidence 677777777777654 9999999999999999776 44445566777899999876 89999999999999887432
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD-DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~-~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
......-.++...|..-...++|.+|+..|++.....-.. +- ....-..+..-|.|++-..+.-.+...+++-....
T Consensus 148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n--~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN--NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 1112233456667777778999999999999877652111 00 01122334556777777788777776666666654
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
|.
T Consensus 226 P~ 227 (288)
T KOG1586|consen 226 PA 227 (288)
T ss_pred Cc
Confidence 43
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-05 Score=76.53 Aligned_cols=133 Identities=19% Similarity=0.158 Sum_probs=105.8
Q ss_pred CCChhHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQ---------NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPL 357 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 357 (546)
+.+|..+.+|..++.+++.. ....+|....++|+++ ++..+.++..+|.+....|+++.|...
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a~~~~g~~~~~~~~~~~a~~~ 360 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKILAIMGLITGLSGQAKVSHIL 360 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhhcchhhHHHH
Confidence 36788889999999988765 2345677777777776 455578899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH-HHHH-HHHHcCCH
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN-NLAS-CYLKQGKY 435 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~-~La~-~y~~~g~~ 435 (546)
|++|+.+ +|+.+.+++..|.++...|+.++|...+++|+++ +|....+-. .+-. .|+ -...
T Consensus 361 f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~ 423 (458)
T PRK11906 361 FEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRRRKAVVIKECVDMYV-PNPL 423 (458)
T ss_pred HHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CchhhHHHHHHHHHHHHc-CCch
Confidence 9999999 4999999999999999999999999999999998 665543322 2222 343 4557
Q ss_pred HHHHHHHHH
Q psy597 436 KEAEILYKQ 444 (546)
Q Consensus 436 ~eA~~~~~~ 444 (546)
++|+.+|-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 788877654
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.3e-05 Score=61.53 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
...+-.-|......|+.+.|++.|.+++.++ |..+.+|++.+..+.-.|+.++|++-+.+++++. |+.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 4456667888999999999999999999996 4458899999999999999999999999999996 444
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
......++...|.+|..+|+.+.|..-|+.|.++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5567788999999999999999999999999876
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-06 Score=71.26 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++......+..|.-++..|++++|...|+-..-. ++...+.+..||.|+..+|+|++|+..|..+..+..++
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4667788899999999999999999999888776 77778889999999999999999999999998875543
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 485 (546)
+ .+....+.++...|+...|...|..++.
T Consensus 105 p----~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 105 Y----RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred C----CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3 4466667777777777777777777664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0003 Score=64.91 Aligned_cols=173 Identities=32% Similarity=0.401 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
.......+..+...+.+..+...+...+.. ...+....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~ 96 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------------------------------------------ELLPNLAE 96 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------------------------------------------hhccchHH
Confidence 456677778888888888888888777652 13466677
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAV-LYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+...+..+...+++..++..+..++.... .+ .......+. ++...|+++.|...+.+++... +..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~ 163 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD-----PEL 163 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc
Confidence 788888888899999999999988887531 11 222333333 8889999999999999996531 000
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
......+...+..+...++++.|+..+.+++.. .+. ....+..++.++...+++..|...+..++...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 164 NELAEALLALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 245666666777788889999999999999988 455 577788899999999999999999998888654
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00056 Score=67.30 Aligned_cols=253 Identities=16% Similarity=0.089 Sum_probs=173.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHH
Q psy597 226 ASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRD 305 (546)
Q Consensus 226 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 305 (546)
...|-|++|..+-++++....+...... ...+ -.......+-.+..+-.-
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~-~sri-----------------------------lsm~km~~LE~iv~c~lv 335 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADL-MSRI-----------------------------LSMFKMILLEHIVMCRLV 335 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccc-hhHH-----------------------------HHHHHHHHHHHHHHHHHH
Confidence 3567788888888888876554431000 0000 001123445566777778
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGEN--HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
.|++.+|++....+.+.+.+..++. ....+.+...+|......|.|+.|...|..|.+...+. .-.+.+-.|+
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnl 410 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNL 410 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhH
Confidence 8999999999999999987763211 12245677888999999999999999999999987554 4567777889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDD-------SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~-------~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
|.+|...|+-+.- .++++.. ++.+ ...+.+++..|...+.++++.+|...+.+.++.....+...
T Consensus 411 Ai~YL~~~~~ed~----y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 411 AISYLRIGDAEDL----YKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHHHHHhccHHHH----HHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence 9999998875533 2333331 1211 12345677778888999999999999999999874433322
Q ss_pred ccC--CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Q psy597 457 CDG--DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK--YKEAEILYK 523 (546)
Q Consensus 457 ~~~--~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~--~~~A~~~~~ 523 (546)
... ...++......|+..++.+...-++++..+. +|.+........+-.+|...|+ .+...+.|.
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 221 2233444677889999999999999888777 4577777777778889999888 444444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=74.70 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS---KYEEVERYYQRALEIY 407 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~ 407 (546)
+|..+.-|..||.+|...|++..|...|.+|+++. |+....+..+|.+++.+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 56778899999999999999999999999999995 777778888888877644 467899999999998
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 408 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+|....+.+.||..++.+|+|.+|...++..++..+.+.
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999876543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=74.11 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG---KYKEAEILYKQVLTRA 449 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g---~~~eA~~~~~~al~~~ 449 (546)
+|..+.-|..||.+|..+|++..|...|.+|+++ .|+++..+..+|.++..+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 5888888999999999999999999999999988 7777778888888776654 345666666666664
Q ss_pred hhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+|....+.+.||..++.+|+|.+|...++..++..
T Consensus 223 ---------------------------------------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 ---------------------------------------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ---------------------------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77888999999999999999999999999999987
Q ss_pred hhh
Q psy597 530 HER 532 (546)
Q Consensus 530 ~~~ 532 (546)
|.+
T Consensus 258 p~~ 260 (287)
T COG4235 258 PAD 260 (287)
T ss_pred CCC
Confidence 654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.4e-05 Score=79.39 Aligned_cols=120 Identities=25% Similarity=0.280 Sum_probs=103.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
+-.++...++++.|+..|++.... .|. +...++.++...++-.+|+..+.+++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 344555678899999999987654 333 4556899999999999999999999966 366788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.+...+..+...++++.|+...++++.+ .|....+|..|+.+|...|+++.|+-.+..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999 8999999999999999999999999777643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-05 Score=75.46 Aligned_cols=136 Identities=13% Similarity=-0.020 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---------GKYKEAEPLCKRAL 362 (546)
Q Consensus 295 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 362 (546)
.++..|......+ ....|..+|.+|+... +-+|..+.+|..+|.++... ....+|....++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 4466676665544 4567888899998332 22677888898888888765 23566778888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
++ ++..+.++..+|.+....++++.|...|++|+.+ +|+.+.+++..|.+....|+.++|...+
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87 4888999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhh
Q psy597 443 KQVLTRAHE 451 (546)
Q Consensus 443 ~~al~~~~~ 451 (546)
++++.+.|.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 999998553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0022 Score=68.08 Aligned_cols=304 Identities=13% Similarity=-0.010 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHH-HhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA-LRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
|.....+..-+..+...|...+|+.+.-.|-+ +..+..+.... ........-..-.......-......+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d--------~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~- 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGD--------PEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLAST- 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCC--------HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhC-
Confidence 45567778888888999999999887655422 22222222111 100000000000000000000000122
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKT-LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+......++......++++|..++.++....+.. .+......+...-..|.+....|++++|+++.+.++.....
T Consensus 415 --P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~-- 490 (894)
T COG2909 415 --PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE-- 490 (894)
T ss_pred --chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc--
Confidence 2334455788888999999999999987765431 01112234455556788899999999999999999987522
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE--AEILYKQVLT 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e--A~~~~~~al~ 447 (546)
........++..+|.+..-.|++++|..+...+.++.+.. ...+....+....+.++..+|+... ....|...-.
T Consensus 491 -~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~ 567 (894)
T COG2909 491 -AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIRE 567 (894)
T ss_pred -ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1223456778899999999999999999999999998776 3345566677778999999994333 3333332222
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVA-KTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~-~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
..-...+.........+..+....+.+.+.......+.+-.... + .+... -.+..|+.+++..|++++|...+.+..
T Consensus 568 q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 568 QHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-P-QPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-c-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11111111001111112222223335555555555554432221 1 22222 233589999999999999999999999
Q ss_pred HHhhhhc
Q psy597 527 TRAHERE 533 (546)
Q Consensus 527 ~~~~~~~ 533 (546)
.....+.
T Consensus 646 ~l~~~~~ 652 (894)
T COG2909 646 RLLLNGQ 652 (894)
T ss_pred HHhcCCC
Confidence 8886554
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0017 Score=59.07 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+.+.+..++...|+|.-+...+.+.++.. ++..+.....+|.+.+..|+.+.|..+|+++-+...+. +
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~ 246 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--D 246 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--h
Confidence 45677888899999999999999999998842 34456677889999999999999999999887665555 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+-.....+..+.+.+|.-.+++..|...|.+++.. ++..+.+.++-|.|..-.|+..+|++.++.++.+.|.
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23445677888999999999999999999999987 8888899999999999999999999999999988765
Q ss_pred cc
Q psy597 452 RE 453 (546)
Q Consensus 452 ~~ 453 (546)
..
T Consensus 319 ~~ 320 (366)
T KOG2796|consen 319 HY 320 (366)
T ss_pred cc
Confidence 43
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.7e-05 Score=67.52 Aligned_cols=122 Identities=25% Similarity=0.251 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..+-.-|.-++..|+|.+|..-|..|+.+++... .......|.+.|.++.+++.++.|+.-+.+++++.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------- 164 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------- 164 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-------
Confidence 45566678899999999999999999999986641 23456678899999999999999999999999994
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|....++...|.+|....+|++|+.-|++.+++ +|..-.+.-.++.+--...
T Consensus 165 -pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 165 -PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKIN 216 (271)
T ss_pred -chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHH
Confidence 889999999999999999999999999999998 7766666666555544333
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0003 Score=73.26 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChHH----------HH
Q psy597 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--KEHPDV----------AK 378 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~----------~~ 378 (546)
++...+.+|+++++. .|....-.+|++.|.-+...++.+.|+++|+++-...-.++. .+.|.. ..
T Consensus 837 Qs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 333333444444433 444556778999999999999999999999986322211100 111222 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CCC--------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKL-----GPD--------DSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~-----~~~--------~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.|...|..+...|+.+.|+.+|..|-+.+-... |.- ......+.+.||+.|...|++.+|+.+|.++
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566678888899999999999998877653210 100 1122345677888999999999999888877
Q ss_pred HHh
Q psy597 446 LTR 448 (546)
Q Consensus 446 l~~ 448 (546)
-..
T Consensus 994 qaf 996 (1416)
T KOG3617|consen 994 QAF 996 (1416)
T ss_pred HHH
Confidence 553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-05 Score=64.48 Aligned_cols=109 Identities=21% Similarity=0.172 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...++.-|...+..|+|.+|++.|+...... +-.+....+...||.+|+..|++++|+..+++-+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5568889999999999999999999988776 445677889999999999999999999999999998 377
Q ss_pred ChHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhhhcc
Q psy597 415 DSNVAKTKNNLASCYLKQGK---------------YKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~---------------~~eA~~~~~~al~~~~~~~ 453 (546)
+|....+++..|.++..+.. ...|...|++.+...|++.
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 88889999999999999877 7889999999998877654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.9e-05 Score=64.68 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++.-|...+..|+|.+|++.|+.....+ +..+....+...++.+|+..|++++|+..+++-+++. +
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----P 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C
Confidence 35668899999999999999999999988776 5567778899999999999999999999999999997 7
Q ss_pred CChHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSK---------------YEEVERYYQRALEI 406 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~---------------~~eA~~~~~~al~~ 406 (546)
.||....+++..|.+++.+.. ...|...|++.+..
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 789999999999999998876 67777777777776
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.5e-05 Score=66.12 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=91.1
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
.-.+..++..++..|..|-..|-+.-|.-.|.+++.+
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------------------------------------------- 94 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------------------------------------------- 94 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc-------------------------------------------
Confidence 4455678889999999999999999999999999884
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.|..+.+++.+|..+...|+|+.|.+.|+..+++ +|..-.+..|.|..++.-|+|.-|.+-+.+-..
T Consensus 95 -~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 95 -RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred -CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------CCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 6888899999999999999999999999999988 566677889999999999999999988776544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-05 Score=76.48 Aligned_cols=121 Identities=26% Similarity=0.289 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 299 (546)
.+-..+...++++.|+.++++..+ ..|. +...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~--------------------------------------------~~pe---v~~~L 206 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE--------------------------------------------RDPE---VAVLL 206 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh--------------------------------------------cCCc---HHHHH
Confidence 344556667899999999988765 2343 45568
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
+.++...++..+|+..+.+++.. .|.....+...+..+...++++.|+.+.++++... |....+
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~ 270 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKE--------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFET 270 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHH
Confidence 99999999999999999999965 34447888899999999999999999999999995 999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 380 LNNLALLCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~~~~a 403 (546)
|..|+.+|...|+++.|+..+..+
T Consensus 271 W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 271 WYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999777643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0031 Score=60.69 Aligned_cols=256 Identities=18% Similarity=0.130 Sum_probs=145.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHH
Q psy597 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304 (546)
Q Consensus 225 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 304 (546)
...+|+++.|..++.++-....... .......+..+++.|....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~------------------------------------~~~~~~La~~~yn~G~~l~ 46 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLD------------------------------------PDMAEELARVCYNIGKSLL 46 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCC------------------------------------cHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999877653211 1233567889999999999
Q ss_pred Hhh-cHHHHHHHHHHHHHHHHH-h-cCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 305 DQN-KYKEAANLLNDALTIREK-T-LGEN----HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 305 ~~g-~~~~A~~~~~~al~~~~~-~-~g~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
..+ +++.|...++++.++... . .... ......++..++.+|...+.++...+ +.++++..+..+| ++|...
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~ 124 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF 124 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH
Confidence 999 999999999999999754 1 0111 13456788999999999998865444 5555555544433 233332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~ 457 (546)
. ..+ .++...++.+++.+.+.+++....- .............-+ .......|...+...+...........
T Consensus 125 ~--L~l-~il~~~~~~~~~~~~L~~mi~~~~~-----~e~~~~~~l~~i~~l-~~~~~~~a~~~ld~~l~~r~~~~~~~~ 195 (278)
T PF08631_consen 125 L--LKL-EILLKSFDEEEYEEILMRMIRSVDH-----SESNFDSILHHIKQL-AEKSPELAAFCLDYLLLNRFKSSEDQW 195 (278)
T ss_pred H--HHH-HHHhccCChhHHHHHHHHHHHhccc-----ccchHHHHHHHHHHH-HhhCcHHHHHHHHHHHHHHhCCChhHH
Confidence 1 222 2222288899999999988875210 111111111111111 223345666777666653222111100
Q ss_pred c--CCChhhHHHHhhchhhHH--HHHHHHHHHHHHHHcC-CCCHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 458 D--GDNKPIWQDRQKNKAKNR--EKYYQRALEIYELKLG-PDDSNV----AKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 458 ~--~~~~~~~~~~~~~~~~~A--~~~~~~Al~~~~~~~~-~~~~~~----~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. ......+.....++.... .+.....+....+..+ +-.+.. ...+.+.|.-.++.++|+.|..+|+-++.
T Consensus 196 ~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 196 LEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 0 000111111111222222 3333333333222222 222222 24556778999999999999999998874
|
It is also involved in sporulation []. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0043 Score=64.99 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---cCCCCHH---------HHHHHHHHHHHHHHcCCHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKT---LGENHAA---------VAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~g~~~~~---------~~~~~~~la~~~~~~g~~~~A~ 355 (546)
+....-..|++.|..+...++.+.|+++|+++-...-.. +.++++. ....|...|......|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 455666789999999999999999999999863321111 1111111 1234566788888999999999
Q ss_pred HHHHHHHHHHHHh-----cCCC--------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCChHHH-
Q psy597 356 PLCKRALEIREKV-----LGKE--------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK--LGPDDSNVA- 419 (546)
Q Consensus 356 ~~~~~al~~~~~~-----~~~~--------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~~~~~~- 419 (546)
.+|..|-..+..+ .|+- ......+.+.||..|...|++.+|+.+|.+|-.....+ ...++-..-
T Consensus 933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999987765432 0110 11223467789999999999999999998775542211 001111100
Q ss_pred ---------HHHHHHHHHHHHcC-CHHHHHHHHHHH------HHhhh------------hcccCccc--CCChhhHHHHh
Q psy597 420 ---------KTKNNLASCYLKQG-KYKEAEILYKQV------LTRAH------------EREFGACD--GDNKPIWQDRQ 469 (546)
Q Consensus 420 ---------~~~~~La~~y~~~g-~~~eA~~~~~~a------l~~~~------------~~~~~~~~--~~~~~~~~~~~ 469 (546)
.-....|..|...| +++.|..+|.++ ++++- ++-....+ ........+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 00112234444554 556666655443 22211 11000000 01111122334
Q ss_pred hchhhHHHHH------HHHHHHHHHHH-----------cC------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 470 KNKAKNREKY------YQRALEIYELK-----------LG------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 470 ~~~~~~A~~~------~~~Al~~~~~~-----------~~------~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
..+++.|... |..|+.+.... .. ++......++..+|.++.++|.|..|-+-|.+|=
T Consensus 1093 ~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 4555555433 45555544311 11 1123345688899999999999999998887764
Q ss_pred H
Q psy597 527 T 527 (546)
Q Consensus 527 ~ 527 (546)
.
T Consensus 1173 d 1173 (1416)
T KOG3617|consen 1173 D 1173 (1416)
T ss_pred h
Confidence 3
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=63.63 Aligned_cols=105 Identities=24% Similarity=0.237 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.+..+-.-|.-++..|+|++|..-|..|+++++... .....
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---------------------------------------~e~rs 134 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---------------------------------------TEERS 134 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---------------------------------------HHHHH
Confidence 345677789999999999999999999999987654 35566
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.+|.+.|.++..++.++.|+..+.+++++ .|....++...|.+|..+..|++|+.-|.+.++..
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 77889999999999999999999999998 56668888999999999999999999999999883
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=79.55 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA---KTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~---~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|..+..++++|.+|...|+|++|+..|++++++ +|+.. .+++|+|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999 66655 56999999999999999999999999986
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0005 Score=59.19 Aligned_cols=133 Identities=23% Similarity=0.195 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
-.+.||......|++.+|..+|++++.-. -......+..++...+..+++..|...+++..+.. ...
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------pa~ 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------PAF 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------Ccc
Confidence 46788999999999999999999998631 12225678899999999999999999999988773 112
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
..+.....+|..+..+|++.+|...|+.++..+ | .+.+....+..+.++|+.++|..-+..+.+..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------p-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------P-GPQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------C-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 234456778999999999999999999999972 2 23455667888999999999998888777654
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00063 Score=66.97 Aligned_cols=196 Identities=16% Similarity=0.107 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
..+-.++.|-...|++.+|+.....+.+.+.+..++. -.....+.+
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~----------------------------------Llr~~~~~i 369 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL----------------------------------LLRAHEAQI 369 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH----------------------------------HHHHhHHHH
Confidence 3455666777788999999988888888776655210 012345677
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
.+.+|......+.|+.|...|..|.+..... ...+.+-.++|.+|...|+-+.-.+.++..-... ...-.....
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n-t~s~ssq~l 443 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN-TNSLSSQRL 443 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC-CCcchHHHH
Confidence 8889999999999999999999999886443 4456777899999999877654333332211000 000000123
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
.+.+++..|...+.++++.+|...+.+.+++.... +.....+-.+..||.+....|+..++.....-+++.+.+..
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 45678888999999999999999999999986322 22344566778899999999999999999999998876643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00041 Score=59.68 Aligned_cols=139 Identities=23% Similarity=0.224 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
......+.+|......|++.+|...|++++. + .....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals------------------------------------------G-~fA~d 123 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS------------------------------------------G-IFAHD 123 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc------------------------------------------c-ccCCC
Confidence 3455678899999999999999999999986 2 23445
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.++..++...+..+++..|...+++..+.. .....+.....+|.++...|++.+|...|+.++..+
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y------- 190 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY------- 190 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------
Confidence 6678899999999999999999999988763 222334567788999999999999999999999985
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
| .+......+..+..+|+.++|..-+....+...+
T Consensus 191 -p-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 191 -P-GPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred -C-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3 2445566788899999999998888777665443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=57.96 Aligned_cols=58 Identities=33% Similarity=0.415 Sum_probs=54.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
|..+|...++|++|+.++++++.+ +|.....+..+|.++...|++++|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357899999999999999999999 4889999999999999999999999999999988
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=58.83 Aligned_cols=66 Identities=32% Similarity=0.395 Sum_probs=56.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425 (546)
Q Consensus 346 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~L 425 (546)
...|++++|+.+|++++... |....++..+|.+|...|++++|...+++++.. .|+....+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 57899999999999999984 888999999999999999999999999999987 56656555555
Q ss_pred HH
Q psy597 426 AS 427 (546)
Q Consensus 426 a~ 427 (546)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.8e-05 Score=76.91 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.|..+.+++++|.+|...|+|++|+..|++++++. ++++....+|+|+|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57778999999999999999999999999999994 222222356999999999999999999999999997
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.038 Score=59.63 Aligned_cols=310 Identities=13% Similarity=0.055 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCchhH---HHhhHHHHH-hhhhhhHHHHHHHH-HHHHhccC
Q psy597 212 PARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGKYEA---AETLEDCAL-RSRKESYDIVKQAK-VAQILGSG 285 (546)
Q Consensus 212 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~---a~~~~~~~l-~~~~~~~~~~~~~~-~~~~l~~~ 285 (546)
...+.+.+.+|.+++ ...+++.|..++.+++.+..+ .+-.+. +..+....+ ...... +..... .......
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~--a~~~l~~~I~~~~~- 131 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA--ALKNLDKAIEDSET- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhc-
Confidence 356788899999988 789999999999999998877 222211 111111111 111111 222211 1222221
Q ss_pred CCCChhHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNIL-ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 286 ~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
..+.....++..+ ...+...+++..|++.++......... ++......+....+.+....+..+++++...++...
T Consensus 132 -~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 132 -YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred -cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 1222233333333 333333479999999999999987654 445555666677788888899999999999999877
Q ss_pred HHHh--cCCCChHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------C-----------------h
Q psy597 365 REKV--LGKEHPDVAKQLNNLAL--LCQNQSKYEEVERYYQRALEIYELKLGPD-------D-----------------S 416 (546)
Q Consensus 365 ~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~eA~~~~~~al~~~~~~~~~~-------~-----------------~ 416 (546)
.... .+..++....++..+-. ++...|++..+...+++.-.......... + +
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~ 288 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTP 288 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCce
Confidence 6644 22223444555555544 34567887788777766555544332110 0 0
Q ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc-cCccc---------------------CCChhh
Q psy597 417 ----------NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE-FGACD---------------------GDNKPI 464 (546)
Q Consensus 417 ----------~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~-~~~~~---------------------~~~~~~ 464 (546)
-.+-+|..-|.++...|..++|.+++.++++...+.. ..... .....+
T Consensus 289 ~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~ 368 (608)
T PF10345_consen 289 LVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQI 368 (608)
T ss_pred eEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233444456667777888899999999998766533 00000 111223
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 465 WQDRQKNKAKNREKYYQRALEIYELKLG-PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
|.....+++..+............+... ......+..++..|..+...|+.+.|..+|.+..-.
T Consensus 369 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~ 433 (608)
T PF10345_consen 369 WCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFL 433 (608)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHh
Confidence 3355667777777777777665443322 112345677888999999999999999999855533
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=58.50 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
|..+|...+++++|+.++++++.+ +|..+..+...|.++..+|++.+|...|+++++..|+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 357889999999999999999999 88899999999999999999999999999999986643
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=60.26 Aligned_cols=160 Identities=23% Similarity=0.226 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.+......-|.+|...|++++|.........
T Consensus 106 sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~------------------------------------------------- 136 (299)
T KOG3081|consen 106 SNLIDLLLAAIIYMHDGDFDEALKALHLGEN------------------------------------------------- 136 (299)
T ss_pred hhHHHHHHhhHHhhcCCChHHHHHHHhccch-------------------------------------------------
Confidence 3334556677889999999999888766322
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 368 (546)
..+...--.++.+..+++-|...++++.++.+.. ++..||..+.. .+.+.+|.-+|+..-+.+
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--- 203 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--- 203 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---
Confidence 2223333467778889999999999988874322 34444444433 345777777777765543
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+.....++..+.++..+|+|++|...++.++.. ++..+.++.|+..+-...|...++..-+-.-+.
T Consensus 204 -----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 204 -----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred -----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 667888999999999999999999999999987 777889999999999999998877765544444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.003 Score=67.13 Aligned_cols=267 Identities=13% Similarity=-0.001 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
+++.....++......+|.+|..+..++....+.... .......+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~-----------------------------------~~~~~l~a 458 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMH-----------------------------------SRQGDLLA 458 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc-----------------------------------cchhhHHH
Confidence 4455666777777888888888877777664433210 11223345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
...-..|.+....|+++.|+++.+.++...... .......++..+|.+..-.|++++|..+...+.++.++. +..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~ 533 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVY 533 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccH
Confidence 555667888889999999999999999876442 223345678899999999999999999999999998765 333
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN---VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~---~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
....++....+.++..+|+ -+...-.++.........+..+. ...++..+..++.+ ++.+..-....+....
T Consensus 534 ~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~ 608 (894)
T COG2909 534 HLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGS 608 (894)
T ss_pred HHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhh
Confidence 5566777778999999993 22222233332222222222333 22333344444443 6666666666665543
Q ss_pred hcccCccc---CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 451 EREFGACD---GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 451 ~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
........ ....++.+....|+++.|.....+....+.... ......+.++.....+...+|++.+|.....+..
T Consensus 609 ~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 609 VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 32211111 112344457788999999998888877754332 1122233344444455567899999988887743
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-05 Score=57.27 Aligned_cols=56 Identities=34% Similarity=0.600 Sum_probs=50.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++...++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999 8889999999999999999999999999999886443
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0014 Score=60.40 Aligned_cols=177 Identities=34% Similarity=0.463 Sum_probs=138.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..+.....+...+..+...+++..++..+..++... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~ 127 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------------------------------------------PD 127 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------------------------------------------CC
Confidence 346677888899999999999999999998887631 11
Q ss_pred hhHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILAL-VYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
+ .......+. ++...|+++.|...+.+++... +........+...+..+...++++.|+..+.+++...
T Consensus 128 ~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--- 197 (291)
T COG0457 128 P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLN--- 197 (291)
T ss_pred c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC---
Confidence 1 222333333 8999999999999999996531 1012345666777777889999999999999999985
Q ss_pred cCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 369 LGKEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+. ....+..++..+...++++.|...+..++.. .+.....+..++..+...+.++++...+.+++.
T Consensus 198 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 198 -----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred -----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 5788999999999999999999999999998 454566677788888888889999999999998
Q ss_pred hhhh
Q psy597 448 RAHE 451 (546)
Q Consensus 448 ~~~~ 451 (546)
..+.
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 7543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.012 Score=56.74 Aligned_cols=170 Identities=13% Similarity=0.056 Sum_probs=110.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
...-+....-.|+|+.|..-|+.++. ++....--+.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~--------------------------------------------dPEtRllGLR 158 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD--------------------------------------------DPETRLLGLR 158 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc--------------------------------------------ChHHHHHhHH
Confidence 34445666778999999999988775 2222222222
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD-- 375 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 375 (546)
.|-.--...|.++.|..|-+.+.... |....+....-...+..|+|+.|+++........ +.+++...
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~ 228 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERS 228 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHH
Confidence 22233345799999999999998775 3334455555566778899999999988766542 11121111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.+..+...+.... ..+...|...-.+++++ .|+...+-..-+..+++.|+..++-.+++.+.+..|
T Consensus 229 rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 229 RAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 1222222222222 34577888888888887 677777777778888889998888888888887643
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00038 Score=63.21 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=100.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+.....+|.+-+..|+.+.|..+|++.-+...+. .+......+..+.+.+|.-.++|..|...|.+.+..
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--- 281 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--- 281 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hccchhHHHHhhhhhheecccchHHHHHHHhhcccc---
Confidence 456667778899999999999999999999877665555 333444567888999999999999999999999877
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
++..+.+-++.|.|....|+...|++..+.++.+. |.+...-....||..+|
T Consensus 282 -----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~-----P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 282 -----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD-----PRHYLHESVLFNLTTMY 333 (366)
T ss_pred -----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC-----CccchhhhHHHHHHHHH
Confidence 47788899999999999999999999999998872 22223334455555544
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00047 Score=67.82 Aligned_cols=273 Identities=17% Similarity=0.071 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh-
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD- 291 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (546)
+.+.++...+..++..|+|.+|...+... .+....+ +...|.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g------------------------------------~~~T~q~ 280 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAG------------------------------------GTITPQL 280 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccC------------------------------------ccccchh
Confidence 44567777888888889988888776432 1111111 111222
Q ss_pred -HHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHhcCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 292 -VATMLNILALVYRDQNKYKEAANLLNDALT-IREKTLGE---------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 292 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~g~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
....++++|.+++..|.|.-+..+|.+|+. .+...-.+ .......++++.|..|...|++-.|.++|.+
T Consensus 281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 345568999999999999999999999996 44333111 0122357899999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------------------------------------------------
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSK------------------------------------------------ 392 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------------------------------------ 392 (546)
+...+ ...+..|..+|.++....+
T Consensus 361 av~vf--------h~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~ 432 (696)
T KOG2471|consen 361 AVHVF--------HRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKL 432 (696)
T ss_pred HHHHH--------hcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCcc
Confidence 99987 4456678888887753100
Q ss_pred -HHHHHHHHHHHHHHHHHh---------------c--------------------------CCCChH--------HHHHH
Q psy597 393 -YEEVERYYQRALEIYELK---------------L--------------------------GPDDSN--------VAKTK 422 (546)
Q Consensus 393 -~~eA~~~~~~al~~~~~~---------------~--------------------------~~~~~~--------~~~~~ 422 (546)
.+=|.-+++.++-+.... . ++..|. ...++
T Consensus 433 slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~ 512 (696)
T KOG2471|consen 433 SLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIF 512 (696)
T ss_pred ccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHH
Confidence 234555666665543100 0 001111 12345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHH------------HHHHH-
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRAL------------EIYEL- 489 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al------------~~~~~- 489 (546)
.+.+.+-+.+|+.-.|+..-.+.+....-............+.+.....+..+|...+.-.+ .-+..
T Consensus 513 A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~ 592 (696)
T KOG2471|consen 513 ANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQW 592 (696)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhh
Confidence 66777788999999999999988876432221111112222222333444444443332210 00000
Q ss_pred -----HcC---CC-------CH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 490 -----KLG---PD-------DS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 490 -----~~~---~~-------~~--~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
... +. .+ .....+++||.+|.-+|++++|..++..|..+.+
T Consensus 593 ~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 593 WKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred hccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 000 00 11 2235678999999999999999999998888766
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.2e-05 Score=70.19 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+-..|.-|+.+|+|++|+.+|.+++.. .|..+..+.+.|.+|++...|..|..-|..|+.+. ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 445689999999999999999999988 45556788999999999999999999999999984 67
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+|...|..-..+|...+|..-++.++++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 8899999999999999999999999999998
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0037 Score=61.39 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=137.3
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
....+..+...+.+.+...+..++......+.+..++=..|....+|+.-+.+.+..-.+- ..+.+....+...+|
T Consensus 111 are~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~ya 186 (374)
T PF13281_consen 111 ARERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYA 186 (374)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHH
Confidence 3555666666677777766666544334445677788888999999998888887765541 011234455667788
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhhc
Q psy597 385 LLCQN---QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ---------GKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 385 ~~~~~---~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~---------g~~~eA~~~~~~al~~~~~~ 452 (546)
.++.+ .|+.++|+..+..++.. ..+..++++..+|.+|... ...++|+.+|.++..+.+
T Consensus 187 fALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-- 257 (374)
T PF13281_consen 187 FALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-- 257 (374)
T ss_pred HHHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc--
Confidence 88888 99999999999987653 2455677888899988542 247899999999998753
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG----PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~----~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
..+...+.+......|..........+....+....+ .+.....+.+..++.+..-.|++++|..+++++++.
T Consensus 258 ---~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 258 ---DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ---cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2233344444444555433333333333312221111 112334556667888889999999999999999987
Q ss_pred hhh
Q psy597 529 AHE 531 (546)
Q Consensus 529 ~~~ 531 (546)
.|.
T Consensus 335 ~~~ 337 (374)
T PF13281_consen 335 KPP 337 (374)
T ss_pred CCc
Confidence 543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=5e-05 Score=49.48 Aligned_cols=41 Identities=56% Similarity=0.890 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+.++.++|.+|...|++++|+.++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56899999999999999999999999999999999999884
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.1e-05 Score=71.18 Aligned_cols=98 Identities=22% Similarity=0.217 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+-..|.-|+++|.|++|+.+|.+++... |..+..+.|.|..|+++..|..|..-+..|+.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 3456889999999999999999999984 888889999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+|...+.+-..+|+..+|.+-++.++.+-|+
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 8999999999999999999999999999987664
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0029 Score=59.65 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=96.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.|...-++..--.+++..|+.......+++.+... .++-|-.......++..+...|-|++|++..++++++
T Consensus 132 d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi--- 204 (491)
T KOG2610|consen 132 DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI--- 204 (491)
T ss_pred hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC---
Confidence 556666666666677777777777777777766542 1445656666667777777888888888888888777
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
++..+++...++.++...|++.++.++..+.-...+.. .-....-|..-|.++...+.|+.|++.|..-+
T Consensus 205 -----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 205 -----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 37777777777888888888887777776655443211 22333445556777777778888887777543
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.4e-05 Score=66.11 Aligned_cols=108 Identities=27% Similarity=0.354 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
+.-+..-|..|+...+|+.|+.+|.+|+.+ +|..+..+.|-+.||++..+++.+..-..+++++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-------- 73 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-------- 73 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------
Confidence 444555677788888999999999999998 8999999999999999999999999888888875
Q ss_pred ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccCC
Q psy597 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 536 (546)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 536 (546)
.|+....++.+|.+......|++|+..+.+|..+.++.++..
T Consensus 74 --------------------------------------~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~ 115 (284)
T KOG4642|consen 74 --------------------------------------DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTF 115 (284)
T ss_pred --------------------------------------ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCC
Confidence 688889999999999999999999999999999998887765
Q ss_pred CC
Q psy597 537 CD 538 (546)
Q Consensus 537 ~~ 538 (546)
.+
T Consensus 116 ~~ 117 (284)
T KOG4642|consen 116 GD 117 (284)
T ss_pred cc
Confidence 43
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0046 Score=56.58 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.....-|.+|...|++++|+........+ .+...-..++.++.+++-|....+++.++.+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide------- 168 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDE------- 168 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccch-------
Confidence 44556678899999999999988774332 2333334677888899999999999888742
Q ss_pred hHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 374 PDVAKQLNNLALLCQ----NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 374 ~~~~~~~~~la~~~~----~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
-.++..||..+. ..+++.+|.-+|++.-+. .+..+.+.+.++.|...+|+|++|...++.++...
T Consensus 169 ---d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 169 ---DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred ---HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 122333443333 234577777777766553 45567788999999999999999999999999864
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
+.
T Consensus 238 ~~ 239 (299)
T KOG3081|consen 238 AK 239 (299)
T ss_pred CC
Confidence 43
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=62.53 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=107.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHH
Q psy597 221 LVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILA 300 (546)
Q Consensus 221 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 300 (546)
-+......|++.+|...+.+.++.+|...- +......+.... .......-....++..-..+.|....+.-.++
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDll----a~kfsh~a~fy~--G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLL----AVKFSHDAHFYN--GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhh----hhhhhhhHHHhc--cchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 344455566666666666666665554320 000000000000 00111111222333333556777788888888
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL 380 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 380 (546)
..+...|-|++|.+..++++++ .+....+...++.++...|+++++.++..+.-...+.. ......-|
T Consensus 183 FgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNy 250 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNY 250 (491)
T ss_pred hhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhh
Confidence 9999999999999999999988 45567788889999999999999999988876654321 22334456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
...|.++...+.|+.|+..|.+-+-
T Consensus 251 WH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 251 WHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHHHhhhcccchhHHHHHHHHHHH
Confidence 6678888889999999999987543
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0036 Score=64.64 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
.|-.++.-|...|+|+.|.++|.++-.. .+ --..|.+.|++..|.+.-.++.. ..
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~---------~d-------ai~my~k~~kw~da~kla~e~~~---------~e 821 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLF---------KD-------AIDMYGKAGKWEDAFKLAEECHG---------PE 821 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchh---------HH-------HHHHHhccccHHHHHHHHHHhcC---------ch
Confidence 4445666677777777777776665322 11 11345566677666555544421 33
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
.....|..-+.-+-+.|+|.+|..+|
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhhee
Confidence 45566777777777888888887766
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=65.15 Aligned_cols=103 Identities=27% Similarity=0.322 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
-+..-|..++.-.+|+.|+.+|.+++.+ +|..+..+.|.+.++.+..+++.+..-.++|+++ +|
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~ 75 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DP 75 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------Ch
Confidence 3455577777888999999999999998 4888999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
+.+...+.+|.+......|++|+..+.++....+...+.
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999998887765543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.13 Score=55.58 Aligned_cols=238 Identities=14% Similarity=0.082 Sum_probs=154.6
Q ss_pred CChhHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYR-DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
.+...+.++..+|.++. ...+++.|..++++++.++++. .-......+...++.++.+.+... |...+++.++..+
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 44556788999999988 6899999999999999997652 223334556677899999998877 9999999999986
Q ss_pred HhcCCCChHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNL-ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~l-a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.. + +.....++..+ ...+...+++..|+..++......... ++......+....+.+....+..+++++...++
T Consensus 131 ~~--~-~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY--G-HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc--C-chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 52 1 12222333333 333333489999999999999986543 334444555556677778888899999999998
Q ss_pred HHhhhhcccCcc-cCCChhhH-------HHHhhchhhHHHHHHHHHHHHHHHHcCCC-----------------------
Q psy597 446 LTRAHEREFGAC-DGDNKPIW-------QDRQKNKAKNREKYYQRALEIYELKLGPD----------------------- 494 (546)
Q Consensus 446 l~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~A~~~~~~Al~~~~~~~~~~----------------------- 494 (546)
............ .......+ +....|+++.+...+.+.-..+.......
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 776554311111 11111111 24556666666555444443333222110
Q ss_pred -----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 495 -----------DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 495 -----------~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
..-..-+|..-|......|..++|.++++++++...+..
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 001123444446666777888899999999999887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0036 Score=69.24 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=165.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+|..+..|...-..+...++.++|.+.+++|+....-.-+........+|.||=.. -|.-+.-.+.|++|.+++
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhc--
Confidence 467777777777778889999999999999999864111001122233344444444 456677778888888874
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+....+..|..+|...+++++|.++|+..++-+. .....|..+|..++++.+-+.|...+.+|+.
T Consensus 1528 -------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 -------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred -------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4466788999999999999999999999998742 4567899999999999999999999999999
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..|... ........+.+....|+.+.+...|+..+.. .|...+.|..+...-.+.|+.+.++.+|++++.
T Consensus 1593 ~lPk~e--Hv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1593 SLPKQE--HVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hcchhh--hHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 887632 2223334555677889999988888888765 677888999999999999999999999999998
Q ss_pred Hh
Q psy597 528 RA 529 (546)
Q Consensus 528 ~~ 529 (546)
+.
T Consensus 1663 l~ 1664 (1710)
T KOG1070|consen 1663 LK 1664 (1710)
T ss_pred cC
Confidence 63
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0032 Score=57.56 Aligned_cols=241 Identities=15% Similarity=0.120 Sum_probs=152.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhh
Q psy597 228 QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQN 307 (546)
Q Consensus 228 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g 307 (546)
..++++|+.-|++++++- +....+-..++-.+..+++..|
T Consensus 40 e~~p~~Al~sF~kVlelE----------------------------------------gEKgeWGFKALKQmiKI~f~l~ 79 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----------------------------------------GEKGEWGFKALKQMIKINFRLG 79 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----------------------------------------cccchhHHHHHHHHHHHHhccc
Confidence 347899999999999852 2233455677888889999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 387 (546)
+|++..+.|.+.+...+.....+... .+.+.+-..-....+.+--..+|+..++..+.. .+.......-..||.+|
T Consensus 80 ~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~ 155 (440)
T KOG1464|consen 80 NYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLY 155 (440)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhh
Confidence 99999999999998776653333222 122222222223445555566677666655443 22333445566789999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc--cCCC
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDS----NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC--DGDN 461 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~----~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~--~~~~ 461 (546)
+..|.|..-...+++.-..++.--|.++. ....+|..-..+|-.+++-.+-..+|++++.+-...+...+ ...-
T Consensus 156 fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRE 235 (440)
T KOG1464|consen 156 FDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRE 235 (440)
T ss_pred eeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHH
Confidence 99999998888888877777665554433 34455666677888899988888999999886432211100 0011
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 462 KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513 (546)
Q Consensus 462 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 513 (546)
..+..+...|.+..|...|-+|.+-|.....+. ....--|..||..+.+.|
T Consensus 236 CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR-RttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 236 CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR-RTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cCCccccccchHHHHHhHHHHHHhcccccCCcc-hhHHHHHHHHHHHHHHcC
Confidence 112336777888888888888877766543321 112223344555555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=47.64 Aligned_cols=41 Identities=46% Similarity=0.609 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+.+++++|.+|...|++++|+.++++++.+.++.+|+++|+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56789999999999999999999999999999999988874
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.013 Score=51.37 Aligned_cols=153 Identities=16% Similarity=0.040 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 217 TLHNLVIQYASQGRYE---VAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.....|+-|+...+.+ +|-..|.++++........ . .. .+..+....+....-.
T Consensus 33 ~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~---~--------------~~------~~ekf~~~n~~t~Ya~ 89 (207)
T COG2976 33 LGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPK---S--------------IA------AAEKFVQANGKTIYAV 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---h--------------HH------HHHHHHhhccccHHHH
Confidence 3445666676655544 7788888888765432210 0 00 0001111121233344
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+...+|..+...|++++|+..++.++... .|.....-+-.+||.+....|.+++|+..+.....-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--------- 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--------- 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---------
Confidence 556778899999999999999999998653 334455667789999999999999999988765432
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+......|.++...|+-++|+..|++++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 345556677899999999999999999999997
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00058 Score=58.87 Aligned_cols=93 Identities=14% Similarity=0.286 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY---KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~---~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 469 (546)
|+.|.+.++..... +|..+..+++-|.++..+.++ .++..+++.++..
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK--------------------- 57 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISK--------------------- 57 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH---------------------
Confidence 56677777776666 788899999999998887655 5577777776654
Q ss_pred hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhhhh
Q psy597 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-----------YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 470 ~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~-----------~~~A~~~~~~al~~~~~~ 532 (546)
|++|+.+ +|....++..+|.+|..++. |++|..+|++|....|.+
T Consensus 58 ----------~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 58 ----------FEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ----------HHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ----------HHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6778877 78888899999998877653 566777777777666654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0028 Score=65.62 Aligned_cols=178 Identities=22% Similarity=0.203 Sum_probs=123.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH----HcCCHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA---ATLNNLAVLYG----KRGKYKEAEPLCKRA 361 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~a 361 (546)
+|....++..+|. .|+-+.++..+.++.+. ... ..|... -.|+.....+. .....+.|.+.+...
T Consensus 188 Pp~~~kll~~vGF----~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~ 259 (468)
T PF10300_consen 188 PPKVLKLLSFVGF----SGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEM 259 (468)
T ss_pred CHHHHHHHhhcCc----CCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH
Confidence 5666665555553 58999999999988652 111 122111 11222211122 234667788888887
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
...+ |..+..+...|.++...|+.++|+..|++++...... ......+++.+|.++..+++|++|..+
T Consensus 260 ~~~y--------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 260 LKRY--------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHhC--------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 7775 8888889999999999999999999999998643332 344567799999999999999999999
Q ss_pred HHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH------
Q psy597 442 YKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY------ 515 (546)
Q Consensus 442 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~------ 515 (546)
+....+.. ....+...+..|.++...|+.
T Consensus 328 f~~L~~~s---------------------------------------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~ 362 (468)
T PF10300_consen 328 FLRLLKES---------------------------------------------KWSKAFYAYLAAACLLMLGREEEAKEH 362 (468)
T ss_pred HHHHHhcc---------------------------------------------ccHHHHHHHHHHHHHHhhccchhhhhh
Confidence 99887641 223344556677777888877
Q ss_pred -HHHHHHHHHHHHHhhh
Q psy597 516 -KEAEILYKQVLTRAHE 531 (546)
Q Consensus 516 -~~A~~~~~~al~~~~~ 531 (546)
++|..+|.++-.....
T Consensus 363 ~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 363 KKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7777777777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0052 Score=63.57 Aligned_cols=126 Identities=15% Similarity=0.017 Sum_probs=100.0
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....|..+..++..|.++...|+.++|+..|++++...... .....-+++.+|.++..+++|++|..++.+..+..
T Consensus 260 ~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 260 LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 33567888889999999999999999999999988543222 23345678999999999999999999999998763
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKY-------EEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
....+...+..|.++...|+. ++|..+|.++-....+..+...|....+.
T Consensus 336 -------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~ 392 (468)
T PF10300_consen 336 -------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVI 392 (468)
T ss_pred -------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHH
Confidence 355677778889999999999 88888888888887776565555544443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.013 Score=51.89 Aligned_cols=130 Identities=22% Similarity=0.197 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 389 (546)
.+-++-++.-+..++.. ........++..+|..|...|+++.|++.|.++.+.. .........+.++..+...
T Consensus 13 ~~~~~~Le~elk~~~~n--~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~ 85 (177)
T PF10602_consen 13 AEELEKLEAELKDAKSN--LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIF 85 (177)
T ss_pred HHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHH
Confidence 33344455555555444 2245567889999999999999999999999988875 3336677888899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 390 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|++..+..+..++-.+.... ++..........-|..++..++|.+|-..|-.+...
T Consensus 86 ~~d~~~v~~~i~ka~~~~~~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 86 FGDWSHVEKYIEKAESLIEKG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred hCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 999999999999999886653 222233344555677778899999999998877653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=56.04 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 351 YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY----------EEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 351 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
|+.|.+.++..... +|..+..+++-|.++..+.++ ++|+.-|++|+.+ +|....
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence 45666666666655 388888899999888776443 4555666666666 888999
Q ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhh
Q psy597 421 TKNNLASCYLKQGK-----------YKEAEILYKQVLTRAH 450 (546)
Q Consensus 421 ~~~~La~~y~~~g~-----------~~eA~~~~~~al~~~~ 450 (546)
+++++|.+|..++. |++|..+|+++....|
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999987653 4555555555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0093 Score=59.08 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA--VAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREK 367 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 367 (546)
+.+.++...+..++..|+|.+|.+.+...- +.....|.-.|. ....++++|.+++..|.|.-+..+|.+|+. .+.+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999999999886542 211111111222 345678999999999999999999999996 3333
Q ss_pred hcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 368 VLGKE---------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 368 ~~~~~---------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
...+- ......+++|.|..|...|++-.|.++|.++...+. ..+..|..||.|+..
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--------~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--------RNPRLWLRLAECCIM 381 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHH
Confidence 32110 122467899999999999999999999999999954 345678888888764
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.027 Score=51.69 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=145.2
Q ss_pred CCCCChhhHHHhhhc----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc--hhHHHhhHHHHHhhh
Q psy597 193 LSPTPPSQFAQQVNA----GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK--YEAAETLEDCALRSR 266 (546)
Q Consensus 193 ~~~~~~~~~~~~~~~----~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~~~l~~~ 266 (546)
....|.+++..+++. +..-.--..++-.+..++++.|+|++-...|.+.+...+....+ .+.......-.+...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 334555555555443 33344556788999999999999999999999999876654321 111111110001111
Q ss_pred hhhHHHHHHHHHH-HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHH
Q psy597 267 KESYDIVKQAKVA-QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA----AVAATLNNL 341 (546)
Q Consensus 267 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~----~~~~~~~~l 341 (546)
....-....+... ..+.. ..+.......-..+|.+|+..|+|.+-...+.+.-..+...-|.++. ....+|..-
T Consensus 119 ~~m~LLQ~FYeTTL~ALkd-AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKD-AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHh-hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 1111111111110 01111 12333334455678999999999999998888888777766555533 345666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV-AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
-.+|....+-.+-..+|++++.+...+ + ||.. ..+.-.=|..+.+.|+|++|-.-|=+|.+-+.....| ......
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAI--P-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRttCL 273 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAI--P-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRTTCL 273 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccC--C-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chhHHH
Confidence 788999999999999999999886444 2 3333 2333334667888999999999998888877665322 223344
Q ss_pred HHHHHHHHHHHcC
Q psy597 421 TKNNLASCYLKQG 433 (546)
Q Consensus 421 ~~~~La~~y~~~g 433 (546)
-|..||..+.+.|
T Consensus 274 KYLVLANMLmkS~ 286 (440)
T KOG1464|consen 274 KYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHcC
Confidence 4666777777665
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.061 Score=51.09 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..-..+..+|+..++|.+|+......+.-.++. +|.+.....+..-+.+|+...+..+|...+..|-......+- +
T Consensus 129 ~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--p 204 (411)
T KOG1463|consen 129 SLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--P 204 (411)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--C
Confidence 344567889999999999999999999988888 777888888888899999999999999998888766544432 2
Q ss_pred hH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 374 PD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 374 ~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
|. .+..-..-|.++....+|.-|..||-+|++-+... .+++....++-.+-.|-...+..++--.++
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 32 23333344777778899999999999999987665 444555556666666666677766655444
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.03 Score=58.24 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKR------ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
...|-.-|.+|.+..++++|+++|++ ++++.+-.+ +..+...-...|.-+...|+++.|+..|-+|-.+.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 45566778888888999999998875 444443321 123344445567777888899988887755433221
Q ss_pred Hh---cC--------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc
Q psy597 409 LK---LG--------------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN 471 (546)
Q Consensus 409 ~~---~~--------------~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (546)
.. .+ .+.......|-.++.-|...|+|+-|.++|.++-. ....+.+|...|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~------------~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL------------FKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch------------hHHHHHHHhccc
Confidence 11 00 11111222345567788888888888888776532 222334455556
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 472 KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 472 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
++..|..... +..+ .......|...+.-+-..|+|.+|..+|
T Consensus 806 kw~da~kla~-------e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 806 KWEDAFKLAE-------ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cHHHHHHHHH-------HhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 5555443322 2222 3345566777777777888888877766
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0048 Score=55.66 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
...+++.-|+-++..|+|.+|...|..|+..+....- .-.+....... -.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l-------------kEkP~e~eW~e-------------Ldk~~t 230 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQL-------------KEKPGEPEWLE-------------LDKMIT 230 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh-------------ccCCCChHHHH-------------HHHhhh
Confidence 4567899999999999999999999999987654430 00000000000 012234
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
..+.+.+.++...|+|-++++.....+.. +|....+|+..|.+....-+.++|..-|.+++++.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 56788899999999999999999999977 67779999999999999999999999999999983
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.014 Score=49.98 Aligned_cols=130 Identities=22% Similarity=0.127 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
....+...|......|+.+.++..+.+++.++....-.......+....... -.....
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~----------------------l~~~~~ 62 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERER----------------------LRELYL 62 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHH----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHH----------------------HHHHHH
Confidence 3445555677777889999999999999998764331100000000000000 123345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..++..+...|++++|+..+.+++.. +|..-.++..+-.+|...|++..|+..|++......+-+|..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 67888899999999999999999999998 6777889999999999999999999999999988877666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.026 Score=49.43 Aligned_cols=101 Identities=22% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
..+...+|..+...|++++|+..++.++... .|......+-.+||.+...+|.+++|+..+.....
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--------- 154 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE--------- 154 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------
Confidence 3445677888999999999999999998764 23345567778999999999999999988765433
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+...+..-...|.++...|+.++|...|++++...
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455556678999999999999999999999864
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.043 Score=55.03 Aligned_cols=133 Identities=22% Similarity=0.223 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 299 (546)
.+.....+..+++.-+...++|+++ .|+.+.+|..|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--------------------------------------------~pdCAdAYILL 208 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--------------------------------------------NPDCADAYILL 208 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------------------------------------------hhhhhHHHhhc
Confidence 3444455677888888888888874 46677777777
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENH-----------------AAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
|.-. ..-..+|..+|+++++..+..++.+. .....+-..+|.+..+.|+.++|++.++..+
T Consensus 209 AEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLl 286 (539)
T PF04184_consen 209 AEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLL 286 (539)
T ss_pred cccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 6522 23357888888888888777655431 1124456789999999999999999999998
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL 404 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 404 (546)
+.. ...+...+..+|..++...+.|.++...+.+--
T Consensus 287 ke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 287 KEF------PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 764 112467789999999999999999999888753
|
The molecular function of this protein is uncertain. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.14 Score=50.49 Aligned_cols=206 Identities=16% Similarity=0.087 Sum_probs=117.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCchhHHH--hhHHHHHhhhhhhHHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHH
Q psy597 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAE--TLEDCALRSRKESYDIVKQAKVAQILGSGG-HDHPDVATMLNILALVY 303 (546)
Q Consensus 227 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~la~~~ 303 (546)
....|..+.....+.+.......+..+... .+... +-.+.+..+.-........+.... .+.+....+....|.++
T Consensus 111 are~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~l-llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 111 ARERYSGARKELAKELRRIRQRLDDPELLSPDIVINL-LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHH-HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHH
Confidence 345555555666666665555544433211 11111 112222222222222222222211 12344556677888888
Q ss_pred HH---hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCC
Q psy597 304 RD---QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---------GKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 304 ~~---~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+ .|+.++|+..+..++... .+..++++..+|.+|... ...++|+..|.++.++.
T Consensus 190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------ 256 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------ 256 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence 88 899999999999876542 334466788888877543 23566777777776662
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH---HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL-EI---YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~---~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+ ....=.|++.++...|...+...-.++.. .+ ..+....+.....+.+..++.+..-.|++++|...+++++.
T Consensus 257 --~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 257 --P-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred --c-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2 33444677777777776554443343333 11 11111112334455666788888899999999999999998
Q ss_pred hh
Q psy597 448 RA 449 (546)
Q Consensus 448 ~~ 449 (546)
..
T Consensus 334 l~ 335 (374)
T PF13281_consen 334 LK 335 (374)
T ss_pred cC
Confidence 64
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.012 Score=50.55 Aligned_cols=109 Identities=25% Similarity=0.225 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGEN--------------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
...|......|+...++..+.+++.+++..+-++ ......++..++..+...|++++|+..+.+++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3345555666788888888888888775432111 11234567778888999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
.. +|..-.++..+-.+|...|++.+|+..|++....+..-+|.
T Consensus 90 ~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 90 AL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred hc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 99 58899999999999999999999999999999988876554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.033 Score=55.78 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=99.6
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH------- 373 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------- 373 (546)
.-.++..++..-++.-.+|+++. |..+.+|..||.- ...-..+|+.+|+++++..+..++.+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 33446678888999999999985 5557777777652 233578999999999998887766531
Q ss_pred ----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 374 ----------PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 374 ----------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
.....+...+|.+..+.|+.++|++.++..++.. ...+...++.+|..+++..+.|.++..++.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1124566789999999999999999999998761 122466789999999999999999998877
Q ss_pred HH
Q psy597 444 QV 445 (546)
Q Consensus 444 ~a 445 (546)
+-
T Consensus 320 kY 321 (539)
T PF04184_consen 320 KY 321 (539)
T ss_pred Hh
Confidence 64
|
The molecular function of this protein is uncertain. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.006 Score=55.75 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=83.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD-----DSNVA 419 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~-----~~~~~ 419 (546)
+.....+++|+..|.-|+-...-. +.++...+..+..+|++|...|+.+....++++|++.+....... .-+..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 334457889999998888765433 344457789999999999999999999999999999887764322 33556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+.+.+|.++.+.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 78899999999999999999999999975
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.27 Score=49.03 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 311 EAANLLNDALTIREKTLG--ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 388 (546)
......+..+......+. .........+...+.+..+.|+++.|...+.++....... ....+.+....+.+++
T Consensus 120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~----~~~~~~v~~e~akllw 195 (352)
T PF02259_consen 120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS----ESLLPRVFLEYAKLLW 195 (352)
T ss_pred cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc----cCCCcchHHHHHHHHH
Confidence 334445555555444422 1245567889999999999999999999999987653111 1224566777899999
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy597 389 NQSKYEEVERYYQRALE 405 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~ 405 (546)
..|+..+|+..++..+.
T Consensus 196 ~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 196 AQGEQEEAIQKLRELLK 212 (352)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998888
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.006 Score=55.05 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC---CCHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE---NHAA-------VAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~---~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
...++..-|+-++..|+|.+|...|..|+...+...-. ..|. ....+.|++.|+...|+|-++++.+...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999877654222 2222 3456889999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 421 (546)
+.. +|....+|+..|.++...=+.++|..-|.+++++ +|....+
T Consensus 257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--------dpslasv 300 (329)
T KOG0545|consen 257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--------DPSLASV 300 (329)
T ss_pred Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------ChhhHHH
Confidence 988 5999999999999999999999999999999998 7765544
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.027 Score=52.13 Aligned_cols=227 Identities=12% Similarity=0.049 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
..+++-.....++++|+..|.+.+..--... .......-.+...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~d------------------------------------ek~~nEqE~tvle 50 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKD------------------------------------EKTLNEQEATVLE 50 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChh------------------------------------hhhhhHHHHHHHH
Confidence 3456667788899999999988876300000 0011223345666
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
++.+|...|++..-.+.....-...... ..|....+...+-.- -.....++.-+..+...++.+.+. .......
T Consensus 51 l~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~ 125 (421)
T COG5159 51 LFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRL 125 (421)
T ss_pred HHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 7777877777665544444443333222 123333333333222 233455666777777776665332 0011122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc---c
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE---F 454 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~---~ 454 (546)
..-..+..+++..|+|.+|+......+.-+++. .|.+.....+..-..+|....+..++...+..+-..+...- .
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq 203 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELKKY--DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ 203 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH
Confidence 233456667777888888887777777666665 55666666677777777777777777666655544332110 0
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHH
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 488 (546)
.........|..+....++..|..+|-+|++.|.
T Consensus 204 lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 204 LQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 0000111112223444556666666666665543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.051 Score=43.37 Aligned_cols=120 Identities=23% Similarity=0.219 Sum_probs=85.8
Q ss_pred HHHHHHHHHHH--HHHhhcHHHHHHHHHHHHHHHHHhcCCC---C-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALV--YRDQNKYKEAANLLNDALTIREKTLGEN---H-AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 292 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~g~~---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
++.+|..|+.. ...-|-|++|...+.+|+++.+.+.... + -..+-++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 44556555544 3446889999999999999987763222 1 1235678889999999999999999999999988
Q ss_pred HHhcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 366 EKVLGKEHPD----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 366 ~~~~~~~~~~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
.+. |.-+.+ .+.+.++.|..+...|+.++|+..|+.+-++.....|
T Consensus 86 NRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 665 222222 3445667889999999999999999999998665433
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00028 Score=43.41 Aligned_cols=33 Identities=48% Similarity=0.783 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 399 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+|++|+++ +|+.+.+++++|.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 47899999 9999999999999999999999986
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00097 Score=41.01 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 499 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 499 ~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+.++.++|.+|..+|++++|+.+|++++++.|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.26 Score=47.96 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=155.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+..+-......|.++.|+.+...+... -|...++..
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~--------------------------------------------Ap~l~WA~~ 192 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEK--------------------------------------------APQLPWAAR 192 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhh--------------------------------------------ccCCchHHH
Confidence 334444456789999999999998773 345555555
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA--TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
..-...+..|+++.|+++.+....... .+++...... .+...+.... .-+...|......+.++. |+
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pd 261 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA--------PD 261 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------Cc
Confidence 555677788999999999987765422 1222222222 2222233232 346888899888888884 77
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
....-..-+..++..|+.-++-..++.+.+. .-+|... .+|....--+.++.-++++-.+..-. ..
T Consensus 262 lvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia-------~lY~~ar~gdta~dRlkRa~~L~slk-~n 327 (531)
T COG3898 262 LVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIA-------LLYVRARSGDTALDRLKRAKKLESLK-PN 327 (531)
T ss_pred cchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHH-------HHHHHhcCCCcHHHHHHHHHHHHhcC-cc
Confidence 7777777889999999999999999999887 3355544 33443333344555555554432111 01
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhhcc
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g~~~~A~~~~~~al~~~~~~~~ 534 (546)
............+..|++..|....+.+... .|. ..++..|+.+-... |+-.++..++-++++.=.+..+
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~--------~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAARE--------APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhh--------Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 1111222233355667777777776666655 333 45778889888776 9999999999999986555544
Q ss_pred CC
Q psy597 535 GA 536 (546)
Q Consensus 535 ~~ 536 (546)
..
T Consensus 399 ~a 400 (531)
T COG3898 399 TA 400 (531)
T ss_pred cc
Confidence 33
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00069 Score=44.61 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
.++..+|.+|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46789999999999999999999999999 8888888888875
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.016 Score=52.97 Aligned_cols=100 Identities=24% Similarity=0.292 Sum_probs=80.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE-----HPDVAKQL 380 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 380 (546)
...+++|+..|.-|+-.+.-. +.++...+..+..+|.+|...|+.+....++++|++.+++.+... ..+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 346778888888777665443 344557788999999999999999998899999988887765432 23557788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+.+|.++.+.|++++|..+|.+.+..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999886
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0011 Score=40.66 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 499 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 499 ~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+.+++.+|.+|..+|++++|+.+|++++++.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=55.15 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
+|..+.....+.+..+.|..+|.+|+.. ......+|...|.+.+. .++.+.|..+|+.+++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence 4666677777888899999999999732 23335678888999666 566677999999999987
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+.....+......+...|+.+.|...|++++... +........|......-...|+.+....+++++....++
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6667777788888899999999999999998761 111213557777888888899999999999999988765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.033 Score=52.78 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
....+..+-.-|+-|++..+|..|+.+|.++|..- -++..-.+..|.|.|-+....|+|-.|+.-..+++.+
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 33456777788999999999999999999998763 1444557889999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|....+++.-|.|++.+.++++|..++++.+.+..
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999999999999999999887643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.029 Score=49.74 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=89.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.......++..+|..|...|+++.|++.|.++.+.+ .........+.++..+....|++.....+..++-...+.
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 456677889999999999999999999999988764 334567888999999999999999999999999888755
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
. ++..........-|..+...++|..|-..|-.+...
T Consensus 106 ~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 G--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred c--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2 322333344555677778889999999999877654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0085 Score=56.59 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.....+.-+-.-|+-|+...+|..|+..|.+.+..- . +|....+..|.|.|.+....|+|..|+.-+.+++.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--- 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--C--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--- 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--C--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 445578888889999999999999999999998752 2 556667888999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
.|....+++.=|.++..+.++.+|..+++..+.+.
T Consensus 149 -----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 59999999999999999999999999999887763
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0015 Score=40.78 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
++.+||.+|...|++++|+.+|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999998877654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0018 Score=39.81 Aligned_cols=30 Identities=43% Similarity=0.573 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+.+|+++|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 457899999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.021 Score=60.82 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=85.8
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..+++.+|.....+.+.. +|....+...-|.++.++|+.++|..+++..-.. .+..-.++..+-
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--------~~~D~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--------KGTDDLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--------CCCchHHHHHHH
Confidence 467888998888888866 5666777788899999999999999666544333 234566778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
.+|..+|++++|..+|++++.. .|. ......+=.+|.+-+.|.+-.+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 565 5566666777777777765443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.018 Score=45.13 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=63.0
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 303 YRDQNKYKEAANLLNDALTIREKTLGEN-HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLN 381 (546)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~~~~~g~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 381 (546)
....|+|..|.+.+.+..+......... ......++.++|.++...|++++|+..+++++.+.++. +|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4567999999999999999887762222 11456678899999999999999999999999999887 44445555555
Q ss_pred HHHHH
Q psy597 382 NLALL 386 (546)
Q Consensus 382 ~la~~ 386 (546)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=44.74 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=63.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKE-HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
....|+|..|.+.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876653222 12456778899999999999999999999999999887 44555555555
Q ss_pred HHHHH
Q psy597 424 NLASC 428 (546)
Q Consensus 424 ~La~~ 428 (546)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55544
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.062 Score=42.87 Aligned_cols=123 Identities=19% Similarity=0.102 Sum_probs=86.7
Q ss_pred HHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 216 RTLHNLV--IQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 216 ~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.+|..++ .-....|-|++|..-|++|.+.....+..- .-......+
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eE--------------------------------aFDh~GFDA 55 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEE--------------------------------AFDHDGFDA 55 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHh--------------------------------hcccccHHH
Confidence 4444443 445667999999999999999876655100 001123457
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTL---GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.++..|+.++...|+|++++..-.+++..+.+.. .......+.+.++.|..+...|+.++|+..|+.+-+......|
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 7888999999999999999999999999876641 1123445667788999999999999999999999988755543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.19 Score=53.94 Aligned_cols=182 Identities=21% Similarity=0.149 Sum_probs=111.1
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.++....+....+|+..-+...-|..+++.|++++|..++ +++..
T Consensus 27 kal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~---------------------------------- 71 (932)
T KOG2053|consen 27 KALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYG---------------------------------- 71 (932)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhcc----------------------------------
Confidence 3555566666778888888888888999999999998444 44432
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+..-..+-.+-.+|...|++++|..+|++++..+ |. -..+..+-.+|.+.+.|.+-.+.-
T Consensus 72 ---------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 72 ---------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred ---------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122245567788899999999999999999999774 33 445666667777877776654443
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER---------YYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~---------~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
-+..+.. +..| ...|..+..+.......+.+.. .+++.++. .| .-...+... ..-.++
T Consensus 134 ~~LyK~~-----pk~~--yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~----~g-k~~s~aE~~-Lyl~iL 200 (932)
T KOG2053|consen 134 LQLYKNF-----PKRA--YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK----KG-KIESEAEII-LYLLIL 200 (932)
T ss_pred HHHHHhC-----Cccc--chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc----CC-ccchHHHHH-HHHHHH
Confidence 3333332 2223 2334444555555544444443 22222221 11 111222222 223456
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy597 430 LKQGKYKEAEILYKQVL 446 (546)
Q Consensus 430 ~~~g~~~eA~~~~~~al 446 (546)
..+|++++|.+.+..-+
T Consensus 201 ~~~~k~~eal~~l~~~l 217 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITL 217 (932)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 67899999999885433
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.24 Score=46.05 Aligned_cols=222 Identities=17% Similarity=0.108 Sum_probs=138.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTI----REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~----~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+|.-....+++++|+..|.+.+.. .++. ....-.+...++.+|...|++..-.+......+...... .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---c
Confidence 4556666778999999999888765 2211 223345788999999999999877766666655554431 1
Q ss_pred hHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 374 PDVAKQLNNLAL-LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 374 ~~~~~~~~~la~-~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
|....+...+-. .-.....++.-+..+...++...+- .........-..++.++++.|+|.+|+......+.-....
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 333333333332 2234567788888888888775433 0011223344567889999999999999998888765542
Q ss_pred c--cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 453 E--FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 453 ~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
. .........-...+....+...+...+..|.......+-| |. .+..-..-|.++..-.+|.-|..||-++++-+
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 2 2222223333344566666666666666665554444332 22 22222334566777889999999999998765
Q ss_pred h
Q psy597 530 H 530 (546)
Q Consensus 530 ~ 530 (546)
.
T Consensus 237 t 237 (421)
T COG5159 237 T 237 (421)
T ss_pred c
Confidence 3
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.56 Score=46.74 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
..+..+..++.+....|+++.|..++.++..... ......+.+....+.+....|+..+|+..++..+........
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 4445566666666666776666666666555410 111224555666666666677766676666666652211110
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHH
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ------GKYKEAEILYKQVLTR 528 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~------g~~~~A~~~~~~al~~ 528 (546)
..........+... . +... .............+.++..+|...... +..+++...|.++.+.
T Consensus 220 ~~~~~~~~~~~~~~---~-------~~~~--~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 220 DSISNAELKSGLLE---S-------LEVI--SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL 287 (352)
T ss_pred ccccHHHHhhcccc---c-------cccc--cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh
Confidence 00000000000000 0 0000 000000011234566777788877777 8888888888888887
Q ss_pred hhhh
Q psy597 529 AHER 532 (546)
Q Consensus 529 ~~~~ 532 (546)
.|..
T Consensus 288 ~~~~ 291 (352)
T PF02259_consen 288 DPSW 291 (352)
T ss_pred ChhH
Confidence 7643
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0016 Score=42.87 Aligned_cols=42 Identities=38% Similarity=0.456 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.++..+|.+|...|++++|+..|+++++.. |+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCCHHHHHHhhh
Confidence 468899999999999999999999999984 777888888775
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.24 Score=47.25 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
.....+|..|...|++.+=.......-..+... ..+..+.....+-..+. .-+....-+.++...++...+. +.
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kR 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KR 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hH
Confidence 344556666666666655444444433333221 11222223333322222 2233445555555555554322 00
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
....-..-..+..+|...++|.+|+......+.-.++. .|.+....++..=..+|+...+..+|...+..|-.
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 11112233455666667777777777666666665555 44455555555556666666666666665555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0031 Score=38.64 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 419 ~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+.+++.+|.+|..+|++++|+.+|++++.+.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999998654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0033 Score=39.24 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
++.+||.+|..+|++++|+.+|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999998876443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0012 Score=40.53 Aligned_cols=32 Identities=50% Similarity=0.812 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 480 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 480 ~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
|++|+++ +|..+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6778877 8999999999999999999999986
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0043 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.++..+|.+|..+|++++|..+|++++++.|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57889999999999999999999999999873
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=54.77 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
+|..+.....+.+..+.|..+|.+|++ .......+|
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------------------------------------------~~~~~~~vy 38 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------------------------------------------DKRCTYHVY 38 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------CCCS-THHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------------------------------------------CCCCCHHHH
Confidence 455666666677778888888888864 233445667
Q ss_pred HHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 297 NILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 297 ~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
...|.+-+. .++.+.|..+|+.++..+.. + ...|......+...|+.+.|..+|++++... +....
T Consensus 39 ~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~ 105 (280)
T PF05843_consen 39 VAYALMEYYCNKDPKRARKIFERGLKKFPS-----D---PDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQ 105 (280)
T ss_dssp HHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----C---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhH
Confidence 777888666 56667799999999988632 2 5556666778889999999999999998763 11121
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
...+|......-...|+.+.....++++.+.+
T Consensus 106 ~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 106 SKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35677778888888999999999999998873
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.71 Score=43.46 Aligned_cols=95 Identities=15% Similarity=0.050 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
...-...++++.+|++.+.+. +...........+|..|+..|++++|..+|+.+...+++- +.......++..+..
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLE 226 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHH
Confidence 344567788999999888766 3345566677889999999999999999999998887764 445567788889999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al 446 (546)
|+...|+.+..+.+.-+.+
T Consensus 227 Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999999998887665543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.11 Score=55.17 Aligned_cols=135 Identities=23% Similarity=0.234 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 213 ARLRTLHNLVIQYASQ-----GRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
.+..+.+.+|.+|..- .+.+.|+.+|+.+...+.+..
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-------------------------------------- 283 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-------------------------------------- 283 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH--------------------------------------
Confidence 3455666777776653 578888888888776311110
Q ss_pred CChhHHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQN-----KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---KYKEAEPLCK 359 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 359 (546)
......+.+.+|.+|.... ++..|..+|.++... ++ ..+.+.+|.++..-. ++..|..+|.
T Consensus 284 -~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 284 -TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------GN----PDAQYLLGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred -hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------CC----chHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 1113346778888888743 678899999998875 22 457788888887766 5789999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEI 406 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~ 406 (546)
.|... ....+.+++|.+|.. .-+...|..+|+++.+.
T Consensus 353 ~Aa~~----------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 353 LAAKA----------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHc----------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 98765 245677888888764 35789999999999886
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.89 Score=43.70 Aligned_cols=222 Identities=18% Similarity=0.112 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH---hcCchhHHHhhH-------HHHHhhhhhhHHHHHHHHHHHH
Q psy597 213 ARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEK---TSGKYEAAETLE-------DCALRSRKESYDIVKQAKVAQI 281 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~---~~~~~~~a~~~~-------~~~l~~~~~~~~~~~~~~~~~~ 281 (546)
.-.+.+++.|......+ +++.|+.+++++.+++.. ..........+. ..++-.........+.......
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 45678999999999999 999999999999999755 221111111111 1111111111122222222223
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 282 LGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 282 l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
+....+++|.. +...-.+....++.+.+.+.+.+++....-. ... .........-+.. .....|...+...
T Consensus 113 l~~e~~~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~----e~~-~~~~l~~i~~l~~-~~~~~a~~~ld~~ 183 (278)
T PF08631_consen 113 LESEYGNKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSVDHS----ESN-FDSILHHIKQLAE-KSPELAAFCLDYL 183 (278)
T ss_pred HHHhCCCCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhcccc----cch-HHHHHHHHHHHHh-hCcHHHHHHHHHH
Confidence 32223333332 2222222333677777777777777653110 111 1111111111122 2345666666666
Q ss_pred HHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhcC-CCChHH----HHHHHHHHHHHHHc
Q psy597 362 LEIREKVLGKEHPD--VAKQLNNLALLCQNQSKYEEV--ERYYQRALEIYELKLG-PDDSNV----AKTKNNLASCYLKQ 432 (546)
Q Consensus 362 l~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~eA--~~~~~~al~~~~~~~~-~~~~~~----~~~~~~La~~y~~~ 432 (546)
+...-.. .++ ........-......++.... ++.....+.......+ +-.+.. ...+.+.|.-.++.
T Consensus 184 l~~r~~~----~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~ 259 (278)
T PF08631_consen 184 LLNRFKS----SEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKA 259 (278)
T ss_pred HHHHhCC----ChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 5443111 122 111111111112222233333 4444444443333222 222222 23456678889999
Q ss_pred CCHHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVLT 447 (546)
Q Consensus 433 g~~~eA~~~~~~al~ 447 (546)
++|+.|..+|+-++.
T Consensus 260 k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 260 KNYDEAIEWYELALH 274 (278)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998774
|
It is also involved in sporulation []. |
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.31 Score=53.01 Aligned_cols=203 Identities=17% Similarity=0.140 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.+|..+|.+-...|...+|++.|-+|- + +..|.....+....|.|++-++++..|.+..+...-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad----------D---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i- 1168 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD----------D---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI- 1168 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC----------C---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc-
Confidence 45678999999999999999999887752 2 234667777888899999999998887665422100
Q ss_pred CChHHHHH---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQ---------------------LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 372 ~~~~~~~~---------------------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
......+ ....|.-++..|.|+.|.-+|. ...-+..||..+.
T Consensus 1169 -d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~----------------~vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1169 -DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS----------------NVSNFAKLASTLV 1231 (1666)
T ss_pred -hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH----------------HhhhHHHHHHHHH
Confidence 0000111 1223444444555554444432 2233556788888
Q ss_pred HcCCHHHHHHHHHHHHHhh--hh--------ccc--CcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCH
Q psy597 431 KQGKYKEAEILYKQVLTRA--HE--------REF--GACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDS 496 (546)
Q Consensus 431 ~~g~~~eA~~~~~~al~~~--~~--------~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 496 (546)
.+|+|+.|....+++-..- .+ ..+ ......+....+ .-..-.+.+-.++|++.+.+++..+|-..
T Consensus 1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER- 1310 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLER- 1310 (1666)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH-
Confidence 8888988888777764321 00 000 000011111111 12222334445667777777776666432
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 497 ~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
.....+..||.+|.+ -++++-.++++-...
T Consensus 1311 AHMgmfTELaiLYsk-ykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSK-YKPEKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 233445566666643 456666665554443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0073 Score=36.57 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.+++.+|.+|...|++++|...|+++++.+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999998875
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.28 Score=46.16 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
-..-+.-....|++.+|...|..++... +....+...++.+|...|+.+.|...+...=.-. ...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QDK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hhh
Confidence 3445666778899999999999999884 4447788999999999999999998887632211 011
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
....+...-.++.......+....-.+ +.. +|....+.+.+|..|...|++++|.+.+-..+..
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~-~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRR-LAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHH-HHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111111111233333333333322222 222 7778888999999999999999999998887775
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.6 Score=45.22 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q psy597 291 DVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-------KYKEAEPLCK 359 (546)
Q Consensus 291 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~ 359 (546)
..+.+.+.+|.+|.. ..++.+|..+|.+|... ++.+. ..+...+|.+|..-+ +...|...|.
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~------g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL------GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc------CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 345567778888877 45899999999999876 22221 345777787777642 2336777777
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
++-... ...+..++|.+|.. ..++.+|..+|.+|.+. .. ....+.++ ++...|
T Consensus 180 ~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 180 KAAELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 776652 45677888887765 44899999999999886 22 66777888 666666
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.8 Score=44.35 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHh----hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQ----NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 294 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 365 (546)
.....++.+|... .+..+|..+|..+... ..+.+.+.||.+|.. ..++.+|..+|.++....
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 4566666666553 4578888888855432 235677889999887 459999999999998873
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCC
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQS-------KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGK 434 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~ 434 (546)
++.-..+...+|.+|..-+ +...|...|.++... . ...+..++|.+|.. ..+
T Consensus 144 -------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--------~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 144 -------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--------G--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred -------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh--------c--CHHHHHHHHHHHHcCCCCCcC
Confidence 2222455778888777642 233677777777765 1 55677888888865 348
Q ss_pred HHHHHHHHHHHHHh
Q psy597 435 YKEAEILYKQVLTR 448 (546)
Q Consensus 435 ~~eA~~~~~~al~~ 448 (546)
+.+|..+|.++-..
T Consensus 207 ~~~A~~wy~~Aa~~ 220 (292)
T COG0790 207 LKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999988774
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=35.71 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.++..+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999865
|
... |
| >KOG4322|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.5 Score=43.37 Aligned_cols=196 Identities=12% Similarity=-0.047 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 329 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
.+-....+..+..+.++....++..|...+.+..-.+.+. .+......++..++.++..-+..-.+..+.-.++....
T Consensus 267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s 344 (482)
T KOG4322|consen 267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS 344 (482)
T ss_pred chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 3444456777889999999999999999999987665332 22344566777888888888888888888877777665
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc--C-----CChhhHH-HHhhchhhHHHHHH
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD--G-----DNKPIWQ-DRQKNKAKNREKYY 480 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~--~-----~~~~~~~-~~~~~~~~~A~~~~ 480 (546)
.. ..+...+.+-.+++......|..+.|+..+..++....-++..... . ....+.. .....+.+.+..++
T Consensus 345 ey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L 422 (482)
T KOG4322|consen 345 EY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYL 422 (482)
T ss_pred Hh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHH
Confidence 54 2344456667788999999999999999999998865543321111 0 1111111 22556677788889
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHhh
Q psy597 481 QRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE---AEILYKQVLTRAH 530 (546)
Q Consensus 481 ~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~---A~~~~~~al~~~~ 530 (546)
++|-.++.+.. .+....++.+.++..|-..|+.++ +...|++++.-.|
T Consensus 423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le 473 (482)
T KOG4322|consen 423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLE 473 (482)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Confidence 99998888773 366688899999999999998654 6667777776554
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.48 Score=49.47 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 330 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
++.....++.++|..+..+-.|++|.++|.+.-.. -++..+++...+|++-+.+.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la~-------- 846 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLAR-------- 846 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHHH--------
Confidence 34556677778888888887888887777665332 133444444444444222211
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
. -|.....+-.+|..+...|--++|.+.|-
T Consensus 847 ~----Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 847 T----LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred h----cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 1 12223344456777777777777776654
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=2 Score=43.95 Aligned_cols=188 Identities=19% Similarity=0.102 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHH--------HHcCCHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLA-VLY--------GKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al 362 (546)
..-+++.+|+++..+.+|..|..++....+.. .+.-..|..++ .++ ...|+-+.|-.+++...
T Consensus 302 ~~l~~fE~aw~~v~~~~~~~aad~~~~L~des--------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 302 KSLMVFERAWLSVGQHQYSRAADSFDLLRDES--------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh--------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 45567889999999999999999998887763 22222233333 222 22456666666666655
Q ss_pred HHHHHhcCCCChHHHH----------------------HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 363 EIREKVLGKEHPDVAK----------------------QLNNLALLCQN--QSKYEEVERYYQRALEIYELKLGPDDSNV 418 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~----------------------~~~~la~~~~~--~g~~~eA~~~~~~al~~~~~~~~~~~~~~ 418 (546)
.+.... |++.|.... .++.++.++.. ....++.. ++..-++..--.|....
T Consensus 374 ~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~ 448 (546)
T KOG3783|consen 374 ELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDE 448 (546)
T ss_pred HHHHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHH
Confidence 554331 122221111 11222222211 11112222 22111111111133344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHH
Q psy597 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498 (546)
Q Consensus 419 ~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 498 (546)
.--+..+|.++..+|+...|..+|..+++.... ...+....
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~---------------------------------------~~~d~w~~ 489 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESK---------------------------------------RTEDLWAV 489 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------------------------------------hccccccc
Confidence 555667788888888888888888877753111 11234456
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhh
Q psy597 499 AKTKNNLASCYLKQGK-YKEAEILYKQVLTRAHE 531 (546)
Q Consensus 499 ~~~~~~La~~y~~~g~-~~~A~~~~~~al~~~~~ 531 (546)
+.+++.+|.+|..+|. ..+|..++.+|-.-..+
T Consensus 490 PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 490 PFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred cHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 7789999999999988 99999999998876544
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.5 Score=40.88 Aligned_cols=58 Identities=24% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~~ 450 (546)
.+.|...|++|+++....++|.+|.......|.+..|+. .|+.++|+...++++..+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 478999999999999998889999988888888888755 8999999999999988654
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.4 Score=41.28 Aligned_cols=146 Identities=16% Similarity=0.101 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
+..+.......+.++-++-+++.++-.+.. +.....+.++.++|..|...++.+.+.+++.+.++..-.. +-.-+.
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eed--ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv 154 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEED--NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDV 154 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhh
Confidence 334444444455566777777777665554 2245668899999999999999999999999988765433 333456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+-..+|.+|..+.-.++.++.....++. |+|....-......|.......+|.+|-.++-.++..+..
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 667778888886665555555555544443 2333333334445677777888999999998888765544
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.3 Score=44.28 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.+.+-|.-.++..+|..++++|...+..++... .+...+...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~--------------------------------------~~~~FaK~q 397 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN--------------------------------------YSDRFAKIQ 397 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh--------------------------------------hhhHHHHHH
Confidence 344555666777778888888877776544322 345568888
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
..++.+|....+.+.|.+++++|-+.. |...-.-..+..+....|.-++|+.+..+.....
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d--------~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVD--------RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhc--------cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999999999999999999998773 3334455566677778899999999998887665
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.019 Score=34.70 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.+++.+|.+|...|++++|+..|++++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999988664
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.0088 Score=59.49 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+-+-+.-.+.-+.|+.|+..|.+|+++ +|..+..+.+.+..+...+++..|+.-+.+|++. +|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cch
Confidence 334566777889999999999999999 5888889999999999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
...+|+.-|.+....+++.+|...|+......|.+
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 99999999999999999999999999998877654
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.013 Score=58.40 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
.-+.-.+.-+.|+.|+..|.+|+++ +|..+..+.+.+..+.+.++|..|+.-+.++++. +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 4456677788999999999999998 5666778889999999999999999999999998 49999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.+|...|.++...+.+.+|...|+....+ .|+...+...+..|-
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECN 116 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHH
Confidence 99999999999999999999999999887 666666665555553
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.2 Score=44.35 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
-..+++-|.-.++..+|..++++|...+.....- ..+...+....+++.||..+.+.|.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3455666666777777777777777776654211 112334566677777777777777777777777666
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|..+.+...+-.+....|+-++|+...........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 555555666666666667777777777666655443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=2.2 Score=40.37 Aligned_cols=164 Identities=17% Similarity=0.124 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
....-+..+......|++.+|.+.|..++.. .+...
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------------------------------------------~~~~~ 168 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQA--------------------------------------------APENS 168 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHh--------------------------------------------Ccccc
Confidence 4445566777888999999999999999984 34446
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+...++.+|...|+.+.|...+...-.-... .. ...+...-..+.......+....-.+. .. +
T Consensus 169 ~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-----~~--~~~l~a~i~ll~qaa~~~~~~~l~~~~-aa--------d 232 (304)
T COG3118 169 EAKLLLAECLLAAGDVEAAQAILAALPLQAQD-----KA--AHGLQAQIELLEQAAATPEIQDLQRRL-AA--------D 232 (304)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHhCcccchh-----hH--HHHHHHHHHHHHHHhcCCCHHHHHHHH-Hh--------C
Confidence 77888999999999999998887764222111 00 111111112222222222222222221 11 4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
|+...+-+.+|..+...|++++|.+.+-..+.. .. ......+...+-.++...|.-+.+...|+
T Consensus 233 Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~---~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 233 PDDVEAALALADQLHLVGRNEAALEHLLALLRR---DR---GFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cc---cccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777888899999999999999999888666554 11 22223344455556666664444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.34 Score=41.71 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=86.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 343 VLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
.-|+..+.-..+-..|..++++. ..++.++|+..|...-+. +....-..+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt------g~g~YpvLA~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT------GYGSYPVLAR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc------CCCcchHHHH
Confidence 34555555555555555555543 345566666666544332 1112223345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 502 (546)
...|.+....|+...|+..|.++-.-.+.+..+........++.+...|.+ .......+.+.++.+|....+.
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy-------~dV~srvepLa~d~n~mR~sAr 170 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY-------DDVSSRVEPLAGDGNPMRHSAR 170 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH-------HHHHHHhhhccCCCChhHHHHH
Confidence 566777777777777777777765533222111111112223333333333 3333334444556678888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 503 NNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 503 ~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..||..-++.|++.+|..+|.....
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHc
Confidence 9999999999999999999998765
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.27 Score=39.08 Aligned_cols=95 Identities=19% Similarity=0.082 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc----CCHH-------HHHHHHHHHHHHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ----SKYE-------EVERYYQRALEIYEL 409 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~-------eA~~~~~~al~~~~~ 409 (546)
+|.-++..|++-+|+++.+..+... +++......+..-|.++..+ .+.+ .|+++|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---
Confidence 4667889999999999999998875 22233335566667777543 3444 345555555555
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|..+..++.+|.-+-....|+++..-.++++.+
T Consensus 74 -----sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 -----SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -----ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6777888888887766666677777777776654
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=95.16 E-value=5.2 Score=42.25 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALT 321 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (546)
.++.....++..+|..+..+..+++|.++|...-.
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35566778999999999999999999999987643
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=95.15 E-value=2.5 Score=43.76 Aligned_cols=194 Identities=11% Similarity=-0.029 Sum_probs=129.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+.....|......-...|++....-.|++++--+ ......|...+......|+.+-|...+.++.++.
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-- 361 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVLARACKIH-- 361 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--
Confidence 344555667777777778899999999999998765 2336778888888888899999999999998886
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.+....+...-+.+....|+++.|...+++...- .|....+-..-+....++|+.+.+.. +.....
T Consensus 362 -----~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s 427 (577)
T KOG1258|consen 362 -----VKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYS 427 (577)
T ss_pred -----CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHH
Confidence 4556666677788888899999999999998876 46666666666667778888888874 222222
Q ss_pred hhhhcccCc---ccCCChhhHH-HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 448 RAHEREFGA---CDGDNKPIWQ-DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513 (546)
Q Consensus 448 ~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 513 (546)
...+..... ........+. +.-.++.+.|...+.++.++ .|.....+..+..+....+
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence 211111000 0001111111 44567777888888887766 4444444444444444433
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.4 Score=35.41 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
-...-|.-++...+.++|+..++++++.. .+.++...++..+..+|...|+|.+++.+.-+=+++.+..
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445556668889999999999999886 4557888889999999999999999999999888887665
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.2 Score=41.38 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=110.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE---------------------NHAAVAATLNNLAVLYG 346 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~---------------------~~~~~~~~~~~la~~~~ 346 (546)
.+|....++..++.++..+|++..|.+++++|+-.++..+.+ .+.....+++.......
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999887643211 12234456777788899
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
+.|-+..|.++++-.+.+. +. .+-..++..+=....+.++|+--+..++.......+. .....+..-+..+
T Consensus 115 ~RG~~rTAlE~~KlLlsLd-----p~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a 185 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLD-----PD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA 185 (360)
T ss_pred hcCcHHHHHHHHHHHHhcC-----CC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence 9999999999999999884 22 1233444555556667788887777777655421000 0001223456678
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHHhhhh
Q psy597 427 SCYLKQGKY---------------KEAEILYKQVLTRAHE 451 (546)
Q Consensus 427 ~~y~~~g~~---------------~eA~~~~~~al~~~~~ 451 (546)
.+++..++. ++|...+.+|+...|.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 888888887 8999999999987664
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=94.91 E-value=3 Score=44.40 Aligned_cols=196 Identities=17% Similarity=0.106 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 293 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 365 (546)
+.+.+.+|.+|.... ++..|..+|..|... + ...+.+.+|.+|.. .-+...|..++.++.+..
T Consensus 325 ~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------G----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 325 PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------G----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------C----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 456778888887755 578999999998764 2 25577788887764 357899999999998872
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc----CCHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ----GKYKEAEI 440 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~----g~~~eA~~ 440 (546)
+ +.+...++.++..- +.++.+...+....+.--.. ....+..+.......... .+...+..
T Consensus 395 -------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 395 -------N---PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred -------C---hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH----HhhHHHHHHHhccccccccccccchhHHHH
Confidence 2 22233344333322 77777777666555542111 111111111111112111 24556666
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHH----hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-C--
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDR----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-G-- 513 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g-- 513 (546)
.+.++...... .....++..+. -..++..|...|..|... . +...+++|.++..- |
T Consensus 461 ~~~~a~~~g~~------~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 461 LYSRAAAQGNA------DAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred HHHHHHhccCH------HHHhhhcceeeecCCCCCChHHHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcc
Confidence 66655543221 11112222211 123456666666666533 2 77888999988652 1
Q ss_pred CHHHHHHHHHHHHHHh
Q psy597 514 KYKEAEILYKQVLTRA 529 (546)
Q Consensus 514 ~~~~A~~~~~~al~~~ 529 (546)
....|..+|.++....
T Consensus 524 ~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 524 VLHLAKRYYDQASEED 539 (552)
T ss_pred hhHHHHHHHHHHHhcC
Confidence 2688999998887754
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.0086 Score=56.85 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=81.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
.+..|.++.|++.|..++.+ +|..+..+...+.++..+++...|++-|..|+.+ +++.+.-|-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccch
Confidence 34567899999999999998 5889999999999999999999999999999999 8888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 425 LASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 425 La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+.....+|++++|...+..+.++
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999886
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.55 Score=34.72 Aligned_cols=70 Identities=23% Similarity=0.178 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.-...-|.-++...+..+|+..+.++++.. .+.+....++..+..+|...|+|.+.+.+..+-+++.+..
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455666778899999999999999876 5567778889999999999999999999999988887665
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.023 Score=54.07 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=94.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCCh
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 462 (546)
-+.-.+..|.++.|+..|..++.+ +|..+..+...+.+++++++...|+.-+..++.+.++.. ..+-.
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa----~~ykf 187 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA----KGYKF 187 (377)
T ss_pred HHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc----cccch
Confidence 344455688999999999999998 899999999999999999999999999999998865432 44556
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 463 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.+.+.+.+|++.+|...+..|.++ ..++... ..+-.+.-..+..++-...++++.+-.
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kl------d~dE~~~---a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKL------DYDEANS---ATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhc------cccHHHH---HHHHHhccchhhhhhchhHHHHHHHHh
Confidence 677888899999999999998876 2222222 234455555555555555555555443
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.78 Score=43.20 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
.......+...+|..|+..|+|++|..+|+.+...+++. +-......++..+..|+...|+.+..+.+.-+.+
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345566777899999999999999999999998888776 5666778889999999999999999888776554
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.3 Score=39.61 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~~~ 531 (546)
...|...|++|+.+....+++.+|.......+.+..|+. .|+.++|+...++|+..+-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 467889999999999998899999998888888887755 89999999999999887644
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.61 E-value=3.6 Score=40.43 Aligned_cols=112 Identities=10% Similarity=-0.009 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|.....+..+-.......+.++...-+++++... ++.+..-..|...-......-.+......|.+++.......
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~ 136 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR 136 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 3333344433444445556667677777777663 33444444444444444455678899999999988776553
Q ss_pred CCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 370 GKE----------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 370 ~~~----------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
... ......++..++......|..+.|+..++-.+++
T Consensus 137 ~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 137 SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 332 2234567778888889999999999999999987
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=94.60 E-value=2 Score=44.72 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHH------HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 298 ILALVYRDQNKYKEAANLLNDA------LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+|.++...|+|.+|.+.|.+. ++++.. .-.+.++.-+...|..++-..+.++--+.+... +
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~--k 704 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI--K 704 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc--C
Confidence 4678888899999999998763 333311 124566777777777777666666655544333 1
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYY------QRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~------~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.|. .-|..+...|+.++|+... +-++++.++. +......+..++..+.+...+.-|-+.|.+.
T Consensus 705 -ePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 705 -EPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred -CcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 122 2355667778888887653 4566666555 4444555555666566666666666666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.46 Score=40.72 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+......+..+..+-...++.+++..++.-.--+. |.....-..-|.++...|++.+|+..++...+-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---- 73 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEER---- 73 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----
Confidence 45567778888888889999999999998777664 888888889999999999999999999997654
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
.+..+.+.-.++.|+..+|+..
T Consensus 74 ----~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 ----APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ----CCCChHHHHHHHHHHHHcCChH
Confidence 6777777888999999888864
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=94.52 E-value=5.9 Score=40.53 Aligned_cols=181 Identities=19% Similarity=0.050 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
....+|..++-.|+|+-|...|+.+.+.+.... .....+.+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--------------------------------------aw~~~A~~~ 251 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--------------------------------------AWKYLAGAQ 251 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--------------------------------------hHHHHHhHH
Confidence 456799999999999999999998888654322 122334444
Q ss_pred HHHHHHHHHhhcH-------HHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKY-------KEAANLLNDALTIREKTLG---ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 297 ~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~g---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
-..|.+....+.. +....+++.|+..+.+... ........+....+.++...|.+.+|...+-+.....-
T Consensus 252 Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l 331 (414)
T PF12739_consen 252 EMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL 331 (414)
T ss_pred HHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 4555555555432 3666777777777766211 12234566777888889999999888887777765521
Q ss_pred HhcCCCChH---HHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 367 KVLGKEHPD---VAKQLNNLALLC--QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 367 ~~~~~~~~~---~~~~~~~la~~~--~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
. . ... .+..+-.+|.+| ...........- ....+.-+..-|.-|.+.|+...|..+
T Consensus 332 ~---~-~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rc 392 (414)
T PF12739_consen 332 E---S-DLRPFGSALLLEQAAYCYASLRSNRPSPGLTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRC 392 (414)
T ss_pred h---h-hhhhHhhHHHHHHHHHhhcccccCCCCccchh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0 0 112 444555556555 111000000000 112333344456789999999999999
Q ss_pred HHHHHHhhhhccc
Q psy597 442 YKQVLTRAHEREF 454 (546)
Q Consensus 442 ~~~al~~~~~~~~ 454 (546)
|..++..+....+
T Consensus 393 y~~a~~vY~~~~W 405 (414)
T PF12739_consen 393 YKQALQVYEGKGW 405 (414)
T ss_pred HHHHHHHhCCCCC
Confidence 9999998765443
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.85 Score=36.32 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=61.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHH
Q psy597 221 LVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILA 300 (546)
Q Consensus 221 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 300 (546)
.+..++..|++-+|+++.+..+..... ....+..+..-|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----------------------------------------~~~~~~lh~~QG 40 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----------------------------------------DESSWLLHRLQG 40 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----------------------------------------CCchHHHHHHHh
Confidence 467789999999999999988874322 222224455555
Q ss_pred HHHHHhh----cH-------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 301 LVYRDQN----KY-------KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 301 ~~~~~~g----~~-------~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.++.... +. -.|++.|.++..+ .|..+..++.+|.-+.....|+++..-.++++.+
T Consensus 41 ~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 41 TIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc--------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5554432 22 3445555555554 4555777888887776666777777777777655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=3.1 Score=36.06 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA--ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
-+....|.+....|+...|+.+|.++-.. ...|... .+...-+.++...|-|+.-.. ..+.+.++
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d 161 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGD 161 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCC
Confidence 34677899999999999999999987654 2233333 234455677788888876544 33444556
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
.+|....+.-.||..-++.|++..|...|.....
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6788888999999999999999999999998766
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.3 Score=42.42 Aligned_cols=173 Identities=14% Similarity=0.033 Sum_probs=113.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchh-HHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYE-AAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
..+|-.+.++..++.++..+|++..|.+++++|+-.+.......- ....-...+.. .+.-...
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~----------------rL~~~~~ 97 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC----------------RLDYRRP 97 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc----------------ccCCccc
Confidence 456888999999999999999999999999999987664431100 00000000000 0000012
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+...-.+++.......+.|-+..|.++.+-.+.+.+. ++| ..++..+-....+.++|+--+.+++.......+
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~----~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD----EDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence 33445566777778888999999999999999988522 144 345566666777888888778877765552100
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKY---------------EEVERYYQRALEI 406 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~---------------~eA~~~~~~al~~ 406 (546)
. -....+...+.++.+++..++- +.|...+.+|+..
T Consensus 172 ~---~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 172 N---WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred h---hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 0 0011234566778888888888 8999999999988
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4322|consensus | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.6 Score=40.88 Aligned_cols=158 Identities=16% Similarity=0.058 Sum_probs=107.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.......++..++.++...+.--.+..+.-.++..+.+. ..+...+.+-.+++....-.|..+.|...+..++....-
T Consensus 308 ~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~ 385 (482)
T KOG4322|consen 308 NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILV 385 (482)
T ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHh
Confidence 344556677777788777777777777777777666554 334444566678888899999999999999999877533
Q ss_pred hcCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH---HHH
Q psy597 368 VLGKEHPD-----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK---EAE 439 (546)
Q Consensus 368 ~~~~~~~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~---eA~ 439 (546)
..|-+... .+.++..-+..+ ...+.+.+.+++++|-.++.+. +-+....++.+.++..|-..|+.+ ++.
T Consensus 386 ~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~A 462 (482)
T KOG4322|consen 386 QGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLA 462 (482)
T ss_pred ccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 22211110 011111112222 5667899999999999998887 446668889999999999999865 555
Q ss_pred HHHHHHHHhhh
Q psy597 440 ILYKQVLTRAH 450 (546)
Q Consensus 440 ~~~~~al~~~~ 450 (546)
..|++.+...+
T Consensus 463 slFrk~~~~le 473 (482)
T KOG4322|consen 463 SLFRKAWRYLE 473 (482)
T ss_pred HHHHHHHHhcC
Confidence 66777766543
|
|
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=93.87 E-value=5.1 Score=38.39 Aligned_cols=133 Identities=18% Similarity=0.180 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 389 (546)
++-++-+++.++-.++.+| ......++.+.|..|.+.|+-+.|.+.+.+..+..-.. +..-+.......+|..|..
T Consensus 81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhcc
Confidence 4455566666666666544 35568899999999999999999999999887765433 3345566677788888765
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 390 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
. +-..+..++|-.++++- +|....-.....-|.......+|.+|-.+|-.++..+..
T Consensus 157 ~---~lV~~~iekak~liE~G--gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 157 H---DLVTESIEKAKSLIEEG--GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred H---HHHHHHHHHHHHHHHhC--CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 4 33444444444444432 333333344445666677888999999999888875443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.084 Score=30.89 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.++..+|.++...|++++|..++++++++.|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678999999999999999999999998754
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=93.71 E-value=5.4 Score=40.94 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q psy597 338 LNNLAVLYGKRGKYK-------EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS---KYEEVERYYQRALEIY 407 (546)
Q Consensus 338 ~~~la~~~~~~g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~ 407 (546)
+...+.++...|+.. ++..+|+++++.. .......++.++..-...- +++..-.++.+++.+.
T Consensus 289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-------~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~ 361 (656)
T KOG1914|consen 289 LIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-------LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE 361 (656)
T ss_pred HHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh
Confidence 344455666666654 4555555555443 1223333444443322222 3566666777776653
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH-HHhhchhhHHHHHHHHHHHH
Q psy597 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 408 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~Al~~ 486 (546)
+.....++.++-..-.+..-.+.|...|.++ .+......+.....+.+ +...++..-|...|+-.+..
T Consensus 362 -------~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka----R~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 362 -------DIDLTLVYCQYMNFIRRAEGLKAARKIFKKA----REDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred -------ccCCceehhHHHHHHHHhhhHHHHHHHHHHH----hhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 2222223333333333333344444444444 34444443444444444 55667777777777777655
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 487 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
+ ++.|. .-......+...++-..|..+|++++..
T Consensus 431 f-----~d~p~---yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 431 F-----GDSPE---YVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred c-----CCChH---HHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 2 22333 3334456666777777788888877765
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.21 Score=31.31 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
.++..||.+....++|++|+.-|++++++.++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999877654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.94 Score=34.98 Aligned_cols=82 Identities=26% Similarity=0.319 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHH
Q psy597 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNR 476 (546)
Q Consensus 397 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 476 (546)
+..+++.++. +|....+.+.+|..+...|++++|++.+-.++...+... -+.+
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-------------------~~~a 60 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-------------------DDAA 60 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-------------------CCHH
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-------------------ccHH
Confidence 4556667766 888899999999999999999999999999887643321 1122
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 477 EKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 477 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
...+-.... .+++.+|.+......|+.++
T Consensus 61 r~~ll~~f~----~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 61 RKRLLDIFE----LLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHH----HH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCChHHHHHHHHHHHHh
Confidence 233332222 34556788888877777665
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.25 Score=31.03 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.++..||.+....++|++|+.-|.+++++.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999877643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=93.38 E-value=7.4 Score=39.80 Aligned_cols=178 Identities=17% Similarity=0.060 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY-------KEAEPLCKRALEIRE 366 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 366 (546)
.....+|+.++..++|+-|...|+-+..-+... ......+.+....|.+....+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 457789999999999999999999998876432 22344566777777777777743 477788888888776
Q ss_pred HhcC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHH--HHcCCHHHH
Q psy597 367 KVLG---KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN---VAKTKNNLASCY--LKQGKYKEA 438 (546)
Q Consensus 367 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~---~~~~~~~La~~y--~~~g~~~eA 438 (546)
+... ........+....+.++...|.+.+|...+-+....+-. .+.. .+..+-.+|.+| ........-
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCcc
Confidence 6311 112345567777788888899988888877766654210 0222 566677777777 322111000
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 488 (546)
..-+++.- ......+..+...|+...|..+|..|+..|.
T Consensus 363 ~~r~RK~a-----------f~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 LTRFRKYA-----------FHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred chhhHHHH-----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 00000000 0011123347788899999999999998875
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.3 Score=41.94 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK-- 410 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~-- 410 (546)
..-.++..+|.-|...|+++.|+++|-++...+... ......+.++-.+-...|+|.....+-.+|.......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 346789999999999999999999999998888444 7788889999999999999999999988887752000
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
....-|....+.. |.+.+.+++|+.|..+|-.+.
T Consensus 223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 0011222334444 444555669999988876544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.15 E-value=8.9 Score=37.68 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=94.6
Q ss_pred CChhHHHHHHHHHHHHHHh------------hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQ------------NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.+|....+|..+...--.. .-.+.-+.+|++|++.. +++.. .+..+-.+.....+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-----p~~~~---L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-----PDSER---LLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHhCCHHHHH
Confidence 4566666666665443332 22355667777777662 33333 3444444455666888888
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNL---ALLCQNQSKYEEVERYYQRALEIYELKLGPD----------DSNVAKTK 422 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~----------~~~~~~~~ 422 (546)
.-+++++... |.....|..+ -......-.++.....|.+++.......... ......++
T Consensus 86 ~~we~~l~~~--------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 86 KKWEELLFKN--------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHC--------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 8888888773 4444444333 2233334568899999999999877664332 23456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
..+.......|..+.|+..++-.++..
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 778888889999999999999998864
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=93.11 E-value=12 Score=39.24 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
...+|+-.|..+....+|++|.+.|.++=
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34455666666667777777776665553
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.1 Score=53.15 Aligned_cols=112 Identities=21% Similarity=0.172 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
++..|..+...|+...|+.++..|+...+. .....+.+||.+....|-...|-.++.+++.+. ..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence 344455566689999999999999876432 223357789999999999999999999999985 44
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
.+..++.+|..+..+.+.+.|++.|+.|++. ++....+-..|-.+-+
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~--------~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL--------TTKCPECENSLKLIRC 721 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc--------CCCChhhHHHHHHHHH
Confidence 4567888999999999999999999999998 5555555554444433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.14 Score=29.80 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
.++..+|.++...|++++|...|.+++...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467899999999999999999999998764
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=92.85 E-value=8.2 Score=36.01 Aligned_cols=57 Identities=23% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|+++....++|.+|.......|.+..|+. .++.++|..+.++++.-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 568999999999998887888889888888888877665 599999999988888754
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.77 E-value=9 Score=36.31 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=122.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~ 366 (546)
.+......++.=+..+...|++..|.++..-.++.+.+. .. +.......+++.+....+.-+ +-..+..+++...
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~--~~-~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS- 80 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS--ED-PVDEESIARLIELISLFPPEEPERKKFIKAAIKWS- 80 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--T----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-
Confidence 445667778888888999999999999888888888775 22 212233456677776665433 4566777777776
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHhcCCCChHHHHHHHHHH-HHHHHcCCHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE--------IYELKLGPDDSNVAKTKNNLA-SCYLKQGKYKE 437 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--------~~~~~~~~~~~~~~~~~~~La-~~y~~~g~~~e 437 (546)
..+......+..+..+|..+++.|++.+|..+|-.+-+ +.........+.....+...| ..|...|+...
T Consensus 81 -~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~ 159 (260)
T PF04190_consen 81 -KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRD 159 (260)
T ss_dssp -HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHH
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHH
Confidence 33445556788999999999999999999998842211 111100011233333444333 44778899999
Q ss_pred HHHHHHHHHHhhhhc----c-----cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 438 AEILYKQVLTRAHER----E-----FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 438 A~~~~~~al~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
|...+..-.+..... . .....+..+..+.....-+. .+...|....+.|...+.. +|.....+..+|..
T Consensus 160 A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~-~~~~~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~ 237 (260)
T PF04190_consen 160 ANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCER-DNLPLFKKLCEKYKPSLKR-DPSFKEYLDKIGQL 237 (260)
T ss_dssp HHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHH-T-HHHHHHHHHHTHH---H-HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhc-CcHHHHHHHHHHhCccccc-cHHHHHHHHHHHHH
Confidence 998887777652211 1 11111222222222221111 1235566655555554432 46677788889999
Q ss_pred HHHcCC
Q psy597 509 YLKQGK 514 (546)
Q Consensus 509 y~~~g~ 514 (546)
|+....
T Consensus 238 yFgi~~ 243 (260)
T PF04190_consen 238 YFGIQP 243 (260)
T ss_dssp HH---S
T ss_pred HCCCCC
Confidence 887544
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=11 Score=37.23 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=104.5
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGE--NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
...++.+.++.+|...-+..+.-.... .. -+-..+.+|+.+..+|...|+...-...+..-+... .++.+....+
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qa 209 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQA 209 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHH
Confidence 344455788999988877765432111 00 023356788899999999999877777776665543 3345566677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+.|-..|...+.|+.|.....++.-- .. ..+...+..++.+|.+..-+++|..|.+++-+|+..+|.
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 88888889999999999998887765421 00 113367788889999999999999999999999998875
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.2 Score=38.29 Aligned_cols=91 Identities=16% Similarity=0.021 Sum_probs=72.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+......+..+..+-...++.+++...+...--+ .|.....-..-|.++...|+|.+|+.+++.+.+.
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--- 73 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--- 73 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---
Confidence 34556667777788888888999998888766655 4666778888999999999999999999997654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
.|....+--.++.|++.+|+.+
T Consensus 74 -----~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 -----APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----CCCChHHHHHHHHHHHHcCChH
Confidence 3666777777888888888864
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=92.52 E-value=15 Score=38.28 Aligned_cols=204 Identities=10% Similarity=-0.003 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 387 (546)
...+.+-.|+..+...-....+..+.....|......-...|+++...-.|++++--+ ......|...+...
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m 341 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWM 341 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHH
Confidence 3344444444444332222234455566778888888899999999999999998776 66778899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 467 (546)
...|+.+-|...+.++.++. .+..+.+...-+.+-...|++..|...++.+....+ +............
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~-------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p----g~v~~~l~~~~~e 410 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIH-------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP----GLVEVVLRKINWE 410 (577)
T ss_pred HHcCchhHHHHHHHhhhhhc-------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC----chhhhHHHHHhHH
Confidence 99999999999999999884 344555666677788889999999999999887642 2222222223335
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhhh
Q psy597 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY-LKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y-~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|....+.. +.......... ..+.......+...++.. .-.++.+.|...+.+++...|..
T Consensus 411 ~r~~~~~~~~~-~~~l~s~~~~~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 411 RRKGNLEDANY-KNELYSSIYEG-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred HHhcchhhhhH-HHHHHHHhccc-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 55666665553 22222211110 111223344455566544 44688999999999999877654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.74 Score=31.44 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
..++.+|..+++.|+|++|..+.+.++++ .|.+..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence 35788999999999999999999999999 6666555433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.36 Score=32.98 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
++++.+|..+.+.|+|++|..+.+.++++-|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 4678899999999999999999999999988764
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=92.20 E-value=16 Score=37.72 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-YKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~-~~eA~~~~~~al~~ 448 (546)
+..+...-+..+|.++..+|+...|..+|..+++... ....+....+.+++.+|.+|+.+|. ..++..++.+|-..
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~-~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKES-KRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 4455666778889999999999999999999987632 2234556678899999999999999 99999999988765
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.02 E-value=14 Score=41.74 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=91.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
....++.....|+.|+..|++...-+ +....--.+.+..|......-.-..--+.|.+|+..+++..+ .+..+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 34466677777888888888776654 333444567888888777654433333678888888877743 45566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA----SCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La----~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.-|...|.+|..+|++++-+++|.-|++.| +.+|..+...-.+. .+... +...|..+.--++..+|+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPE 623 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 678888999999999999999999999886 44555544333222 22221 234455555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.3 Score=37.29 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
......+......-...++++++..++...--+. |.....-..-|.++...|++++|+..++...+-
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~----- 73 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLIARGNYDEAARILRELLSS----- 73 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-----
Confidence 3445566666666667899999999888776664 777888888899999999999999999988764
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
.+..+.+.-.++.|+..+|+.+
T Consensus 74 ---~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 ---AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred ---CCCchHHHHHHHHHHHhcCChH
Confidence 4455666777888888888754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=12 Score=35.86 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
......++...|..|...|+-+.|.+.+.+.....-.. +....+.-+...+|..|....-..+.++-....++.
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~---- 173 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE---- 173 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh----
Confidence 35677889999999999999999999998887654443 334455566677777776554444444333333333
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
|+|....-..-..-|..+....+|.+|-..|-.++..+..
T Consensus 174 -GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 174 -GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred -CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 2443433444445677777788899998888888776543
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.86 Score=35.19 Aligned_cols=83 Identities=19% Similarity=0.073 Sum_probs=51.0
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
.+..+......+|.+..+.+.+|..+...|++++|+..+-.++..-+... .+.+...+...+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~--~~~ar~~ll~~f~~l------------- 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE--DDAARKRLLDIFELL------------- 71 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC--CCHHHHHHHHHHHHH-------------
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc--ccHHHHHHHHHHHHc-------------
Confidence 34445555567789999999999999999999999999988776533322 122222222222222
Q ss_pred HHhccCCCCChhHHHHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVY 303 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~ 303 (546)
+..+|........|+.++
T Consensus 72 ------g~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 72 ------GPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp -------TT-HHHHHHHHHHHHHH
T ss_pred ------CCCChHHHHHHHHHHHHh
Confidence 556777777766666654
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=91.53 E-value=27 Score=39.02 Aligned_cols=207 Identities=19% Similarity=0.159 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------H--HHHhcCchhHHHhhHHHHHhhhhhhHHH----HHHH--HHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALE------D--LEKTSGKYEAAETLEDCALRSRKESYDI----VKQA--KVA 279 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~--~~~~~~~~~~a~~~~~~~l~~~~~~~~~----~~~~--~~~ 279 (546)
.+.+|..+|.+-...|...+|++.|-+|-+ . .....+.++....++..+.....+..-. ...+ ...
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL 1182 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH
Confidence 457889999999999999999988876522 1 1122355666666655554333322111 0111 011
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
..++.- -..|..+. .-..|.-++..|.|+.|.-+|... .-+..||..+..+|+|..|....+
T Consensus 1183 ~elE~f-i~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v----------------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1183 TELEEF-IAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV----------------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHH-hcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 111100 01222222 334577777778887776665443 346678888889999999999988
Q ss_pred HHHHHH--HH---------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 360 RALEIR--EK---------------VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 360 ~al~~~--~~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
+|-... +. ..|-+---.+.-+-.+...|...|-|++-+..++.++-+ .......+
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL--------ERAHMgmf 1316 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL--------ERAHMGMF 1316 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch--------hHHHHHHH
Confidence 875431 11 011111111223445666777788888888888877776 34444566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
..||.+|.+- ++++-.++++--..
T Consensus 1317 TELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 7777777553 46666666554433
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.8 Score=44.52 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 293 ATMLNILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 293 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.+..++..|++ +|+..+|..++..++.+.... ..-.++..+|.++.+.|...+|--.+..|+.-+
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA------ 279 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH------NKDIALLSLATVLHRAGFSADAAVILHAALDDA------ 279 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc------cccchhhhHHHHHHHcccccchhheeehhccCC------
Confidence 3445555655554 799999999999999875322 223467889999999999999988887777654
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+....-++.+|.++...|++.....+|..+.+.
T Consensus 280 --~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 --DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred --ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 445555888999999999999998888877765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.1 Score=40.61 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
.....+.++-.+|...++++.|+.+.+..+.+. |+.+.-+.-.|.+|.++|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~--------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFD--------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 456778899999999999999999999999985 7777778889999999999999999999999873
Q ss_pred CCChHHHHHHHHHH
Q psy597 413 PDDSNVAKTKNNLA 426 (546)
Q Consensus 413 ~~~~~~~~~~~~La 426 (546)
|++|........+.
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 55665554444443
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=90.58 E-value=5.5 Score=39.35 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---H
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR---E 366 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~ 366 (546)
...-.++..+|.-|...|+++.|+..|-++-+.+.. ...+...+.++-.+-...|+|..-..+..+|.... .
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 445677889999999999999999999998887743 46778889999999999999999998888887662 0
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL 404 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 404 (546)
.. ...-|....++ -|.+....++|..|..+|-.+.
T Consensus 222 ~~-~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 222 NL-AQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hH-HHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhCC
Confidence 00 00012223344 4445555668998888886553
|
|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
Probab=90.58 E-value=4.3 Score=33.14 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=44.4
Q ss_pred CcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhh
Q psy597 79 GLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQ 137 (546)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~q 137 (546)
|.+..+++..|++.+...|.|++.++.++.+|..+-.-+++|+..+-...........+
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~ 69 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKE 69 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888999999888888888888888888887776666555444333
|
The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.6 Score=38.90 Aligned_cols=79 Identities=27% Similarity=0.233 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 350 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.-+.|...|-++-. ...-..+...+.||..|. ..+.++|+..+.++++++. +++...+..+..|+.+|
T Consensus 121 ~d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHH
Confidence 34566666555432 223456778888888777 6789999999999999843 33455688899999999
Q ss_pred HHcCCHHHHHH
Q psy597 430 LKQGKYKEAEI 440 (546)
Q Consensus 430 ~~~g~~~eA~~ 440 (546)
..+|+++.|.-
T Consensus 189 ~~~~~~e~AYi 199 (203)
T PF11207_consen 189 QKLKNYEQAYI 199 (203)
T ss_pred HHhcchhhhhh
Confidence 99999999863
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=90.35 E-value=9.2 Score=38.03 Aligned_cols=109 Identities=20% Similarity=0.144 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc--CC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTL--GE-N-------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--g~-~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.+-..=|..++.+++|..|..-|..+++++.+-. ++ . ......+-..+..||..+++.+.|+....+.+.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 3444456778889999999999999999886531 11 0 111234456789999999999999999999998
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+ +|....-+...|.++..+.+|.+|-+.+--+.-+|--.
T Consensus 257 l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 257 L--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred c--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8 48888888999999999999999998887776665433
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.09 E-value=17 Score=34.33 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
......++.++|..|...++.+.+.+...+.+...-.. +-...+.-+-..+|.+|..+.=.++.++.....++.
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk---- 184 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK---- 184 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh----
Confidence 35667899999999999999999999999888765444 334445556667888887766666666666665554
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
|++....-..-...|..+....+|.+|-..+-..+..+..
T Consensus 185 -GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 185 -GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred -CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 2443333344445677777778888888888877766543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.44 Score=26.97 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.45 Score=26.95 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
.+..++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=89.18 E-value=31 Score=35.98 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-------------CH---HHHHHHHHHHHHHHHcCCH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN-------------HA---AVAATLNNLAVLYGKRGKY 351 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-------------~~---~~~~~~~~la~~~~~~g~~ 351 (546)
.+|.....+..++.++..+|+.+.|.....+++-.+...+.+. .| ...-+++..-..+...|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 5688899999999999999999999999999998877653221 12 1223344444566788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 352 KEAEPLCKRALEIREKVLGKE-HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
..|.++++-.+.+- +. +|. -+.+.+-.......+|.=-+..++..-.. ... ..-|+... -..+|..|.
T Consensus 359 rTA~E~cKlllsLd-----p~eDPl--~~l~~ID~~ALrareYqwiI~~~~~~e~~-n~l--~~~PN~~y-S~AlA~f~l 427 (665)
T KOG2422|consen 359 RTALEWCKLLLSLD-----PSEDPL--GILYLIDIYALRAREYQWIIELSNEPENM-NKL--SQLPNFGY-SLALARFFL 427 (665)
T ss_pred HHHHHHHHHHhhcC-----CcCCch--hHHHHHHHHHHHHHhHHHHHHHHHHHHhh-ccH--hhcCCchH-HHHHHHHHH
Confidence 99999999988873 11 222 22222222333445555555555443221 111 11233222 234666777
Q ss_pred HcCC---HHHHHHHHHHHHHhhh
Q psy597 431 KQGK---YKEAEILYKQVLTRAH 450 (546)
Q Consensus 431 ~~g~---~~eA~~~~~~al~~~~ 450 (546)
.... -..|...+.+|+...|
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCc
Confidence 6665 5788888888888766
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.83 Score=43.07 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
-.+.|.-....|+.++|..+|+.|+.+. |....++..+|......++.-+|-.+|-+|+.+ +|.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~ 182 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPG 182 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCC
Confidence 3445555668899999999999999995 888889999999999999999999999999998 777
Q ss_pred HHHHHHHHHH
Q psy597 418 VAKTKNNLAS 427 (546)
Q Consensus 418 ~~~~~~~La~ 427 (546)
...++.+.+.
T Consensus 183 nseALvnR~R 192 (472)
T KOG3824|consen 183 NSEALVNRAR 192 (472)
T ss_pred chHHHhhhhc
Confidence 7777666543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.2 Score=40.55 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
....+.++-.+|...++++.|+.+.+..+.+ .|..+.-+...|.+|.++|.+..|..-++..++..|+.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 4567788899999999999999999999998 777777788899999999999999999999999877654
|
|
| >PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.8 Score=34.46 Aligned_cols=49 Identities=31% Similarity=0.424 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQ 133 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~ 133 (546)
-+..|..++..+-.+...|+.++..|-+||.-|+-|...++.++.+..+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778888899999999999999999999999999999888877766
|
SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.9 Score=39.84 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---h---H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEH---P---D----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
|..+++.++|..|.--|..+++++.+..-... + + ...+-..|..||...++.+-|+....+.+.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 45566777777777777777777755321111 1 1 2234567889999999999999999999988
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+|....-+..-|.|+..+.+|.+|-..+--+
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999998887655433
|
|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=7.2 Score=35.34 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
....++........++..|..+|+-|+.+|+.++.+....+..+..+.+...
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445566666677777777777777777777777776666655444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.44 E-value=30 Score=34.94 Aligned_cols=175 Identities=10% Similarity=0.063 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+....+|+.........++-+.|+...++++... |. ....++.+|...++-++...+|+++.....+..
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS--------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence 4456778888888888899999999888887663 43 456678888888888888888888776543321
Q ss_pred ---------CC-CChH-HHHH------HHHHHHH-----HHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH-HH
Q psy597 412 ---------GP-DDSN-VAKT------KNNLASC-----YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DR 468 (546)
Q Consensus 412 ---------~~-~~~~-~~~~------~~~La~~-----y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~ 468 (546)
+. +++. .... ...++.| -.+..-.+.|..+|-++ ...+..........+.. +.
T Consensus 368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~----rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL----RKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH----hccCCCCcceeeeHHHHHHH
Confidence 11 1110 0000 1111111 11222234444444443 33332222333333333 55
Q ss_pred hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 469 ~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
..+++..|-..|+-.+.. .|+........-..+...++-..|..+|++++...
T Consensus 444 ~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 444 ATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred hcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 566777666666666544 22222223333444555666666777776665544
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=88.15 E-value=2 Score=43.06 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++..|..++.-+|+|..|++.++-.---....+..-.+....+++.+|.+|..+++|.+|++.|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788999999999999876542222222333356677889999999999999999999999998766554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.94 E-value=3.5 Score=34.85 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=65.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.......+......-...++.+++...+...--+ .|.....-..-|.++...|+|.+|+..++...+-.
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--- 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--- 74 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC---
Confidence 3444555666666666688999988887766555 45557777788999999999999999999887652
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
+..+...-.++.|+..+||.+
T Consensus 75 -----~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 -----GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -----CCchHHHHHHHHHHHhcCChH
Confidence 444555666788888777754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4521|consensus | Back alignment and domain information |
|---|
Probab=87.28 E-value=38 Score=38.39 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391 (546)
Q Consensus 312 A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 391 (546)
|..||.+++++.+.. +-.+.+..+..+|++.. +++.|..+..+.++-.-+...|
T Consensus 982 ~lhYYlkv~rlle~h----------------------n~~E~vcQlA~~AIe~l----~dd~ps~a~~~t~vFnhhldlg 1035 (1480)
T KOG4521|consen 982 ALHYYLKVVRLLEEH----------------------NHAEEVCQLAVKAIENL----PDDNPSVALISTTVFNHHLDLG 1035 (1480)
T ss_pred HHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHhC----CCcchhHHHHHHHHHHhhhchh
Confidence 566777777665443 34556666666676653 5667888888888888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 392 ~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
.+-+|...+-+ . ++....-.++..+-.+++..|+.+.
T Consensus 1036 h~~qAy~ai~~---n------pdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1036 HWFQAYKAILR---N------PDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred hHHHHHHHHHc---C------CcHHHHHHHHHHHHHHHHhccchHH
Confidence 88777654432 2 4455566778888888888887653
|
|
| >KOG1497|consensus | Back alignment and domain information |
|---|
Probab=87.13 E-value=29 Score=33.33 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
...+.+...||.+|.+.++|..|-..+.-. .........+.......+..+|.+|...++..+|..+..++--..-..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 345678889999999999999998776432 111000001123456678899999999999999999998875443222
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.++..........|+++-..++|-+|...|-+...
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344445567777778888777776665543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=87.05 E-value=5 Score=45.04 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
..--.+.+..|.....+-.-..--..|.+|+..+... .+.+..+--|...|.+|..+|+|++-+++|.-|++.+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 582 (932)
T PRK13184 509 KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL--HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY---- 582 (932)
T ss_pred ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh--cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc----
Confidence 3345567777777766544333336667777776666 3344445557778888999999999999999998887
Q ss_pred CCCChHHHH
Q psy597 370 GKEHPDVAK 378 (546)
Q Consensus 370 ~~~~~~~~~ 378 (546)
++||....
T Consensus 583 -~~~~~~~~ 590 (932)
T PRK13184 583 -SQHPEISR 590 (932)
T ss_pred -CCCCccHH
Confidence 55565443
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=86.68 E-value=43 Score=34.76 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 309 YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388 (546)
Q Consensus 309 ~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 388 (546)
++..-.++++++.+... .+ .-++..+-..-.+..-.+.|...|.++-+.. ..+....+...+- -|.
T Consensus 347 ~~~~~~~~~~ll~~~~~-----~~--tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~------r~~hhVfVa~A~m-Ey~ 412 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDI-----DL--TLVYCQYMNFIRRAEGLKAARKIFKKAREDK------RTRHHVFVAAALM-EYY 412 (656)
T ss_pred hhhhHHHHHHHHhhhcc-----CC--ceehhHHHHHHHHhhhHHHHHHHHHHHhhcc------CCcchhhHHHHHH-HHH
Confidence 55555666666655322 22 2233333344444455666777777765542 1121222222222 244
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
..++..-|.+.|+-.+..+ ++.|.. -......+...|+-..|..+|++++..
T Consensus 413 cskD~~~AfrIFeLGLkkf-----~d~p~y---v~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 413 CSKDKETAFRIFELGLKKF-----GDSPEY---VLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hcCChhHHHHHHHHHHHhc-----CCChHH---HHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 5788888888888887762 334433 334455667778888888888888764
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=86.37 E-value=23 Score=38.49 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 316 LNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 316 ~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
|.-|+.+++.. +-+......++...|.-++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 44445555443 23344567788899999999999999999999998764
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.30 E-value=15 Score=35.05 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....++..++..+...|+++.+...+++.+.. +|..-..|..+-..|...|+...|+..|++.-.....-.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edl 221 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEEL 221 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhc
Confidence 455778899999999999999999999999977 677778899999999999999999999999988766555
Q ss_pred CCCChHHHH
Q psy597 370 GKEHPDVAK 378 (546)
Q Consensus 370 ~~~~~~~~~ 378 (546)
|-++.....
T Consensus 222 gi~P~~~~~ 230 (280)
T COG3629 222 GIDPAPELR 230 (280)
T ss_pred CCCccHHHH
Confidence 555444333
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=86.27 E-value=18 Score=42.52 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---C-C---------------
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---G-K--------------- 350 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---g-~--------------- 350 (546)
...++..-.+|..+...|.+.+|+..|.+|+...+.. .|.-+.+.++-.++.+..-. | +
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 3456778889999999999999999999999999987 88888888887776544321 1 0
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHhcC---CCChH--HHHHHHHHHHHHH
Q psy597 351 -------------------------------------YKEAEPLCKRALEIREKVLG---KEHPD--VAKQLNNLALLCQ 388 (546)
Q Consensus 351 -------------------------------------~~~A~~~~~~al~~~~~~~~---~~~~~--~~~~~~~la~~~~ 388 (546)
...=...+++++.++.+... ...|. ...+...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 11122345556665555421 11222 3456667777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 389 NQS--------------------KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 389 ~~g--------------------~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
... .-.++..+..+++.+.-..+ +..+....+..+|.+|...|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 766 67788888888887643322 24466888999999999999988888888877765
Q ss_pred h
Q psy597 449 A 449 (546)
Q Consensus 449 ~ 449 (546)
.
T Consensus 475 ~ 475 (1185)
T PF08626_consen 475 L 475 (1185)
T ss_pred h
Confidence 4
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.19 E-value=16 Score=34.82 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
....++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 44678899999999999999999999999988 5888889999999999999999999999999887555555
Q ss_pred CCCh
Q psy597 413 PDDS 416 (546)
Q Consensus 413 ~~~~ 416 (546)
.++.
T Consensus 223 i~P~ 226 (280)
T COG3629 223 IDPA 226 (280)
T ss_pred CCcc
Confidence 4443
|
|
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=86.14 E-value=33 Score=34.42 Aligned_cols=146 Identities=16% Similarity=0.032 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHHcCCH---HHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV-------AATLNNLAVLYGKRGKY---KEAEPLCKRAL 362 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~-------~~~~~~la~~~~~~g~~---~~A~~~~~~al 362 (546)
+..++..|.+......|++|+.++-.|-+.+... .+.. +..-..+.+||+.+.+. +.|..-+.++-
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~C----d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~ 238 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLC----DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRAR 238 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh----hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHH
Confidence 4455667788888889999999988887766543 2222 22334456777777653 45655555555
Q ss_pred HHHHHhcC-----------CCChHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--
Q psy597 363 EIREKVLG-----------KEHPDVA---KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA-- 426 (546)
Q Consensus 363 ~~~~~~~~-----------~~~~~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La-- 426 (546)
+-+...+| +..|..+ ..+..-|.+.+.+|+-++|..+++.+...+....-++.. ......+|
T Consensus 239 kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~--lsllv~mGfe 316 (568)
T KOG2561|consen 239 KGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDET--LSLLVGMGFE 316 (568)
T ss_pred HhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchH--HHHHHHcCCC
Confidence 54444444 4445443 344556999999999999999999998877665333221 11122221
Q ss_pred ----H--HHHHcCCHHHHHHHHHH
Q psy597 427 ----S--CYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 427 ----~--~y~~~g~~~eA~~~~~~ 444 (546)
. +-.-.|+.+.|..++.+
T Consensus 317 esdaRlaLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 317 ESDARLALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred chHHHHHHHhccccHHHHHHHHHH
Confidence 1 11234677777776643
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=85.97 E-value=17 Score=29.61 Aligned_cols=75 Identities=19% Similarity=0.021 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP-------DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+..+|......+++-.++-+|++|+.+.+.....+.. -......|||..+..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678888899999999999999999998877322211 124457799999999999999999999998876666
Q ss_pred cC
Q psy597 411 LG 412 (546)
Q Consensus 411 ~~ 412 (546)
.+
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.06 E-value=12 Score=33.63 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=52.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
+...-..+.+.+.+|..|. ..+.++|+.++.+++++... ++...+.++..|+.+|...|+++.|-
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3344566888899998877 56789999999999999643 23455788999999999999999885
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.83 E-value=1.3 Score=40.07 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=50.4
Q ss_pred hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccCC
Q psy597 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 536 (546)
Q Consensus 469 ~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 536 (546)
..++...+.+.|.+|+.+ .|.....|+.+|....+.|+++.|...|++.+++.|+..+++
T Consensus 7 ~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 7 ESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA 66 (287)
T ss_pred ccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccch
Confidence 445666666777777766 788899999999999999999999999999999998876654
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=84.76 E-value=34 Score=31.94 Aligned_cols=57 Identities=25% Similarity=0.184 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+.|...|+.|.++....+++.+|.......+.+..|+. .++.++|....++|+.-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 457788999999998877888899888888888877665 599999998888877655
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=84.66 E-value=5.3 Score=40.13 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
++..+.+++.-.|+|..|+..++.. ++-++.. + ....+....++
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l--------------------------------~---~~V~~~~is~~ 167 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGL--------------------------------Y---TKVPACHISTY 167 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Ccccchh--------------------------------h---ccCcchheehH
Confidence 4566778889999999998877542 2111000 0 22456667889
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKT 326 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 326 (546)
+.+|.+|...++|.+|+..|...+-...+.
T Consensus 168 YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 168 YYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998765443
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=84.43 E-value=43 Score=41.06 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=86.8
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
......+.+|...|.+.+..|.++.|..++-+|.+.. .+.++...|..++..|+-..|+..+++.++...
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 3467789999999999999999999999998887652 366888999999999999999999999997753
Q ss_pred HhcCC---------CChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 367 KVLGK---------EHPDVAKQLNNLALLCQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 367 ~~~~~---------~~~~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
..... +......+...++......|++ ..-+++|..+.++ .|.....++.+|
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLG 1796 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHH
Confidence 22100 1111223444555555555654 4567788888887 443344455555
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.40 E-value=1.7 Score=39.44 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=55.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
.....++.+.|.+.|.+++++ .|.....|+.+|....+.|+++.|...|++.+++.+++..+
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 455789999999999999999 88899999999999999999999999999999998876533
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=84.39 E-value=12 Score=31.06 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+.+++|.++....+ ..+.+.+++..++. ..+...-...+.|+..+++.++|+.++.|.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5677888888887654 45566666666651 223445678889999999999999999999999987
|
|
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=84.13 E-value=17 Score=36.37 Aligned_cols=120 Identities=18% Similarity=0.045 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
..++..|.++.....|++|+.++-.|-+.+..-...+ +. .....+..
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~kl----------Le-----------------------~VDNyall 210 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKL----------LE-----------------------LVDNYALL 210 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHH----------HH-----------------------hhcchhhh
Confidence 4567788888888999999988887766543322100 00 11122222
Q ss_pred HHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhc-----------CCCCHHHH---HHHHHHHHHHHHcCCHHHHHHHH
Q psy597 296 LNILALVYRDQNK---YKEAANLLNDALTIREKTL-----------GENHAAVA---ATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 296 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-----------g~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
-..+.|+|+...+ .++|..-+..+-.-+...+ |+..|..+ ..+..-|.+.+..|+-++|.+++
T Consensus 211 nLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~l 290 (568)
T KOG2561|consen 211 NLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEAL 290 (568)
T ss_pred hcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3334455555443 3445544444444444443 34455433 45566799999999999999999
Q ss_pred HHHHHHHHHh
Q psy597 359 KRALEIREKV 368 (546)
Q Consensus 359 ~~al~~~~~~ 368 (546)
+.+.......
T Consensus 291 e~a~~~l~el 300 (568)
T KOG2561|consen 291 ESAHAKLLEL 300 (568)
T ss_pred HHHHHHHHHe
Confidence 9998776554
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=83.61 E-value=5.6 Score=40.66 Aligned_cols=88 Identities=19% Similarity=0.098 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ---SKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
..+.+..|+..|.+++... |.....+.+.+.++.+. |+.-.|+.-...|+.+ +|....+++
T Consensus 386 y~~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~ 449 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHF 449 (758)
T ss_pred hhHHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHH
Confidence 3345677888888888774 77788888888888764 5666677777777777 888999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.|+.++...+++.+|+.+...+....|
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999988776665544
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=83.29 E-value=31 Score=30.35 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=109.4
Q ss_pred ChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-----KRGKYKEAEPLCKRAL 362 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al 362 (546)
+...+.....||..+.. +.+|++|...|.. . -+....+...+.+|..+. ..+++..|++++..+-
T Consensus 30 ~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~-------n--Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC 100 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLEGIQKNFQAAVKVFKK-------N--CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC 100 (248)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHh-------c--ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh
Confidence 34445666677765544 3455555555544 3 222333445555555443 3467899999998887
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHH-----cCC--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQN-----QSK--YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~--~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
+. ..+.+..++|.+++. .++ .++|++++.++.++ ....+.++|...|..- .
T Consensus 101 ~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g--~ 158 (248)
T KOG4014|consen 101 DA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGG--K 158 (248)
T ss_pred cc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhcc--c
Confidence 64 234556677877764 233 67899999998876 2344566676665432 1
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc---
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--- 512 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~--- 512 (546)
+++ ...+|..... ......+....+.+.|..+.-+|-++ ..+.+..++.+.|..-
T Consensus 159 ~k~-------~t~ap~~g~p-----~~~~~~~~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv 216 (248)
T KOG4014|consen 159 EKF-------KTNAPGEGKP-----LDRAELGSLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGV 216 (248)
T ss_pred hhh-------cccCCCCCCC-----cchhhhhhhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCC
Confidence 221 1112211111 01112233345555566555555543 3455667788877542
Q ss_pred -CCHHHHHHHHHHHHHHhhhhc
Q psy597 513 -GKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 513 -g~~~~A~~~~~~al~~~~~~~ 533 (546)
.+-++|..+-.+|.++..+-.
T Consensus 217 ~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 217 PKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999886654
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=82.93 E-value=2.7 Score=40.19 Aligned_cols=62 Identities=26% Similarity=0.411 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
|+.+|.+|+.+. |..+..|+.+|.++...|+.=.|+-+|-+++-. ......+..||..++.+
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~--------~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV--------RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS--------SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHH
Confidence 788999999996 999999999999999999999999999999965 23347778888888877
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.89 E-value=30 Score=32.91 Aligned_cols=76 Identities=26% Similarity=0.280 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...+...+..|...|.+.+|+.+.++++.+ +|..-..+..+-.++...|+--.|...|++.-+..+.-.|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 345566788899999999999999999998 588888888999999999999999999999888877766654
Q ss_pred ChHH
Q psy597 415 DSNV 418 (546)
Q Consensus 415 ~~~~ 418 (546)
..+.
T Consensus 351 vdds 354 (361)
T COG3947 351 VDDS 354 (361)
T ss_pred cchh
Confidence 4433
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.80 E-value=56 Score=32.93 Aligned_cols=142 Identities=18% Similarity=0.062 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
......+..++..++|..|...+...... .. + ........
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~------------------------------------~-~~~~~~~~ 171 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LP------------------------------------G-REEYQRYK 171 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC------------------------------------c-hhhHHHHH
Confidence 45567778889999999999999988763 11 0 11111222
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
....|.-++..-++.+|.+.++..+...... ......+..+..+. ++...+.............-.+.
T Consensus 172 ~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-----~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
T PF09670_consen 172 DLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-----NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYA 239 (379)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHH
Confidence 3334566677889999999999987652110 00111122221111 11222222221111100000111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
....+..-|.--...|+|+.|+..+-++++++-+
T Consensus 240 ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 240 LLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 2222233333334689999999999999998543
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=82.64 E-value=13 Score=30.92 Aligned_cols=70 Identities=19% Similarity=0.077 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.......+++|+++.... +..+.+.+++..+.. ..+...-...+.|+..+++.|+|+.++.+++..++.-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 334566788888887654 556777777777751 2344456788999999999999999999999999873
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.55 E-value=4 Score=26.61 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+|..|...|+++.|...+++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999864
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.49 E-value=58 Score=32.84 Aligned_cols=143 Identities=15% Similarity=0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS--CYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~--~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
......+.-.++.++|..|...+...... . ++ ... ...+..++. -++...++.+|.+.++..+.....
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~-~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~---- 201 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PG-REE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA---- 201 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cc-hhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh----
Confidence 34556677788999999999999998763 1 11 222 344555544 456788999999999998874211
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
.....+........-.+...+.............-.+.....+..-|.=-...|+|+.|...+=+++++.-+..+
T Consensus 202 ----l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL 276 (379)
T PF09670_consen 202 ----LNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRL 276 (379)
T ss_pred ----hHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111111112222221111111000001122222333333334589999999999999988765543
|
|
| >PRK13169 DNA replication intiation control protein YabA; Reviewed | Back alignment and domain information |
|---|
Probab=82.22 E-value=6 Score=31.65 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=35.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~ 131 (546)
.+..|..++..+-.+...|+.+|..|..||.-|+-|...++.++.+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777778888888888888888888888877777777654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.13 E-value=17 Score=37.37 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
...++..+..+|.++.|+.....- ...+. +..+.|+++.|.+...+. .
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rFe---LAl~lg~L~~A~~~a~~~-------------~ 345 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP----------------DHRFE---LALQLGNLDIALEIAKEL-------------D 345 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H----------------HHHHH---HHHHCT-HHHHHHHCCCC-------------S
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh----------------HHHhH---HHHhcCCHHHHHHHHHhc-------------C
Confidence 556667777778777766554331 22333 334778888777654431 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
....|..||.....+|+++-|+.+|+++-+. ..|..+|...|+.+.=.++.+.+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------------~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF----------------SGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------cccHHHHHHhCCHHHHHHHHHHHH
Confidence 3447889999999999999999999887543 345666777777655444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=82.10 E-value=13 Score=35.42 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 382 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+.|.-....|+.++|...|+.|+.+ .|..+.++..+|.+....++.-+|-.+|-+++.+.|.+.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3444456789999999999999999 888999999999999999999999999999999876543
|
|
| >PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif | Back alignment and domain information |
|---|
Probab=80.61 E-value=15 Score=28.75 Aligned_cols=55 Identities=29% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy597 96 VEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSS 150 (546)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~ 150 (546)
+=.|.+|||+|+..|-..----..--+.+...|...++.+..++.+...|.|.++
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~ 57 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQ 57 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888877765443222233334455555555555555555555555544
|
This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.59 E-value=4.7 Score=26.27 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTI 322 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~ 322 (546)
+.+|.+|...|+++.|...+++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=80.57 E-value=6.5 Score=24.30 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYK--QVLTRAH 530 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~--~al~~~~ 530 (546)
+.+..+|..+..+|++++|+.+|. -+..+.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999944 6655543
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.52 E-value=32 Score=31.17 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=59.0
Q ss_pred CChhHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHH
Q psy597 22 MNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQ 101 (546)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (546)
+=...-++.+..+...|..|+.|...+-..|...... ..+++. -++ +.+.......+.++.+.+
T Consensus 79 WV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~--~~~~~~-~l~-------------~~~~~~~~~~~~L~~~n~ 142 (206)
T PRK10884 79 WIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT--WNQRTA-EMQ-------------QKVAQSDSVINGLKEENQ 142 (206)
T ss_pred eEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHH-HHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3344566677777777777777776665555443211 001111 111 222334445566888888
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
+|+.++..+..++.-|..++...+.....-.-..+
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG 177 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888887777777777766655554444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 546 | ||||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 8e-99 | ||
| 3nf1_A | 311 | Crystal Structure Of The Tpr Domain Of Kinesin Ligh | 2e-48 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 3e-80 | ||
| 3ceq_A | 283 | The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc | 9e-46 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 3e-80 | ||
| 3edt_B | 283 | Crystal Structure Of The Mutated S328n Hklc2 Tpr Do | 3e-46 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-05 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 8e-05 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 1e-04 |
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-118
Identities = 217/324 (66%), Positives = 238/324 (73%), Gaps = 43/324 (13%)
Query: 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267
GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG----------------- 62
Query: 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTL 327
HDHPDVATMLNILALVYRDQNKYK+AANLLNDAL IREKTL
Sbjct: 63 -------------------HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103
Query: 328 GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387
G++H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK+HPDVAKQLNNLALLC
Sbjct: 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163
Query: 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
QNQ KYEEVE YYQRALEIY+ KLGPDD NVAKTKNNLASCYLKQGK+K+AE LYK++LT
Sbjct: 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Query: 448 RAHEREFGACDGDNKPIWQD-----RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502
RAHEREFG+ D +NKPIW K K K+ + + + D V T
Sbjct: 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG--WYKACKVDSPTVTTTL 281
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
NL + Y +QGK++ AE L + +
Sbjct: 282 KNLGALYRRQGKFEAAETLEEAAM 305
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 1e-67
Identities = 75/303 (24%), Positives = 111/303 (36%), Gaps = 77/303 (25%)
Query: 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK----------TS-------- 249
G++ P L+ L + Y Q +Y+ A L AL EK +
Sbjct: 62 GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121
Query: 250 ---GKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ 306
GKY+ AE L AL R++ G DHPDVA LN LAL+ ++Q
Sbjct: 122 GKRGKYKEAEPLCKRALEIREKVL---------------GKDHPDVAKQLNNLALLCQNQ 166
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-R 365
KY+E AL I + LG + VA T NNLA Y K+GK+K+AE L K L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
E+ G + + + + K ++ + + + D V T NL
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG--WYKACKVDSPTVTTTLKNL 284
Query: 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485
+ Y +QGK++ AE + A+
Sbjct: 285 GALYRRQGKFEAAE--------------------------------------TLEEAAMR 306
Query: 486 IYE 488
+
Sbjct: 307 SRK 309
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 1e-66
Identities = 80/211 (37%), Positives = 102/211 (48%), Gaps = 38/211 (18%)
Query: 316 LNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375
+ + + G A TL+NL + Y +G+Y+ A PLCK+ALE EK G +HPD
Sbjct: 8 SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 67
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
VA LN LAL+ ++Q+KY++ AL I E LG D VA T NNLA Y K+GKY
Sbjct: 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 127
Query: 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495
KEA E +RALEI E LG D
Sbjct: 128 KEA--------------------------------------EPLCKRALEIREKVLGKDH 149
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+VAK NNLA QGKY+E E Y++ L
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 6e-34
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 37/177 (20%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT---------------------SG 250
P + L+NL + +QG+YE ++ALE + G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 251 KYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310
K++ AETL L E + G + + + K K
Sbjct: 210 KFKQAETLYKEILTRAHE-----------REFG---SVDDENKPIWMHAEEREECKGKQK 255
Query: 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ + K + V TL NL LY ++GK++ AE L + A+ R++
Sbjct: 256 DGTSFG--EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-114
Identities = 187/317 (58%), Positives = 212/317 (66%), Gaps = 43/317 (13%)
Query: 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274
+ + H+ + AVPLCKQALEDLEKTSG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSG------------------------ 36
Query: 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV 334
HDHPDVATMLNILALVYRDQNKYKEAA+LLNDAL IREKTLG++H AV
Sbjct: 37 ------------HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK HPDVAKQLNNLALLCQNQ K E
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
EVE YY+RALEIY +LGPDD NVAKTKNNLASCYLKQGKY++AE LYK++LTRAHE+EF
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 455 GACDGDNKPIWQD-----RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
G+ +GDNKPIW K+K ++ Y + + D V T +L + Y
Sbjct: 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALY 262
Query: 510 LKQGKYKEAEILYKQVL 526
+QGK + A L
Sbjct: 263 RRQGKLEAAHTLEDCAS 279
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 1e-70
Identities = 72/236 (30%), Positives = 98/236 (41%), Gaps = 39/236 (16%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
PA TL+NL + Y +G+Y+ A PLCK+ALE EK GK
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------------------- 121
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
HPDVA LN LAL+ ++Q K +E AL I LG +
Sbjct: 122 ----------------FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKEHPDVAKQLNNLALLCQNQ 390
VA T NNLA Y K+GKY++AE L K L EK G + D + +++
Sbjct: 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225
Query: 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
K + Y + + D V T +L + Y +QGK + A L
Sbjct: 226 DKRRDSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 37/176 (21%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT---------------------SG 250
P + L+NL + +QG+ E ++ALE G
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 251 KYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310
KY+ AETL L E G + D + ++K +
Sbjct: 184 KYQDAETLYKEILTRAHEKE--------------FGSVNGDNKPIWMHAEEREESKDKRR 229
Query: 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
++A K + V TL +L LY ++GK + A L A R+
Sbjct: 230 DSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 8e-47
Identities = 51/343 (14%), Positives = 101/343 (29%), Gaps = 88/343 (25%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
L Y Y A+ L + A+ D A+
Sbjct: 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI 103
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ----------------- 306
+ DI ++ +D A L L VY +
Sbjct: 104 VCCQRHLDISREL----------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153
Query: 307 ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
N + A +L + L++ + AA NL + G +++A ++ L
Sbjct: 154 DVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
I ++ + + +NL ++E YY++ L + +L D + A++
Sbjct: 212 IAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR-QLK-DRAVEAQSCY 267
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRA 483
+L + Y Y++A Y+ +
Sbjct: 268 SLGNTYTLLQDYEKAI--------------------------------------DYHLKH 289
Query: 484 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
L I + +L D + +L + Y G + +A ++ L
Sbjct: 290 LAIAQ-ELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-44
Identities = 49/334 (14%), Positives = 95/334 (28%), Gaps = 106/334 (31%)
Query: 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDI 272
A L + G V + A++
Sbjct: 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQ----------------------------- 33
Query: 273 VKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA 332
G D ++ + + L Y + Y +A + LT+ +
Sbjct: 34 -----------VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQL 80
Query: 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392
A NL G + EA C+R L+I ++ + A+ L NL + + K
Sbjct: 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGK 138
Query: 393 --------------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
+ Y+ L + LG D + + NL + +
Sbjct: 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT-ALG-DRAAQGRAFGNLGNTHYLL 196
Query: 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492
G +++A +++ L I + + G
Sbjct: 197 GNFRDA--------------------------------------VIAHEQRLLIAK-EFG 217
Query: 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
D + + +NL + Y+ G+++ A YK+ L
Sbjct: 218 -DKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 28/216 (12%)
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
+A L K G + + A+++ ++ ++ + L
Sbjct: 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLH 57
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL----- 446
Y + Y+ L + +G D AK NL + G + EA + ++ L
Sbjct: 58 DYAKALEYHHHDLTLAR-TIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Query: 447 TRAHEREFGACD---------GDNKPIWQDRQKNKA-KNREKYYQRALEIYE------LK 490
E A G + + + ++ Q A+++YE
Sbjct: 116 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
LG D + + NL + + G +++A I ++Q L
Sbjct: 176 LG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 11/112 (9%), Positives = 24/112 (21%), Gaps = 42/112 (37%)
Query: 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN 475
S K G +
Sbjct: 2 SASCLELALEGERLCKSGDCRAGV------------------------------------ 25
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+++ A+++ D ++ + L + Y Y +A + LT
Sbjct: 26 --SFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-46
Identities = 50/341 (14%), Positives = 100/341 (29%), Gaps = 103/341 (30%)
Query: 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA 262
QQ + + L + + G V + A++
Sbjct: 36 QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ------------------- 76
Query: 263 LRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTI 322
+G D ++ + + L Y Y +A LT+
Sbjct: 77 ---------------------AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115
Query: 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
+ + A + NL G++ EA C+R L + ++ + + L N
Sbjct: 116 AKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYN 171
Query: 383 LALLCQNQSKY-----------------EEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
L + + K+ +YQ L++ LG D + NL
Sbjct: 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR-DLG-DRGAQGRACGNL 229
Query: 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485
+ Y G ++ A +++Q L
Sbjct: 230 GNTYYLLGDFQAA--------------------------------------IEHHQERLR 251
Query: 486 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
I + G D + + +NL + ++ G++++A YK+ L
Sbjct: 252 IAR-EFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 2e-44
Identities = 43/254 (16%), Positives = 87/254 (34%), Gaps = 33/254 (12%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETL---------------ED 260
++ NL GR++ A C++ L + + L +
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQR 186
Query: 261 CALRSRKESYDIVKQA--------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEA 312
+ + + + +A K+ + LG D L Y ++ A
Sbjct: 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLG----DRGAQGRACGNLGNTYYLLGDFQAA 242
Query: 313 ANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372
+ L I + + AA +NL + G++++A KR L + ++ E
Sbjct: 243 IEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GE 298
Query: 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
A+ +L ++ Y+ R L I + +LG D A+ +L + +
Sbjct: 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ-ELG-DRIGEARACWSLGNAHSAI 356
Query: 433 GKYKEAEILYKQVL 446
G ++ A +Q L
Sbjct: 357 GGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-33
Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 46/238 (19%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355
L+ A + ++ + + +++ L G +
Sbjct: 9 LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415
+ A++ ++ ++ + L Y + +Y++ L + + + D
Sbjct: 69 AFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK-SMN-DR 122
Query: 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN 475
AK+ NL + G++ EA
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEA------------------------------------- 145
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533
+R L + +LG D + + NL + Y +GK+ K
Sbjct: 146 -AICCERHLTLAR-QLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-30
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 42/191 (21%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
R NL Y G ++ A+ ++ L
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLR-------------------------------- 251
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
+A+ G D + L + ++++AA L + + LGE A
Sbjct: 252 --IAREFG----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE-LGEREV-EA 303
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
+ +L Y ++ A R L I +++ + A+ +L +E
Sbjct: 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSAIGGHER 361
Query: 396 VERYYQRALEI 406
+Y ++ L++
Sbjct: 362 ALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 26/193 (13%), Positives = 54/193 (27%), Gaps = 44/193 (22%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
++L+ A G ++ + +L N
Sbjct: 6 MSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCR 65
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
++Q A++ D ++ + L + Y G Y +A
Sbjct: 66 AGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKA---------------- 105
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
+Y++ L + + + D AK+ NL + G+
Sbjct: 106 ----------------------MQYHKHDLTLAK-SMN-DRLGEAKSSGNLGNTLKVMGR 141
Query: 515 YKEAEILYKQVLT 527
+ EA I ++ LT
Sbjct: 142 FDEAAICCERHLT 154
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD---- 467
GP S + + + L G + + + +
Sbjct: 1 GPLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSG------SDGGSSMCLELALE 54
Query: 468 --RQKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523
R N R ++Q A++ D ++ + L + Y G Y +A +K
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110
Query: 524 QVLT 527
LT
Sbjct: 111 HDLT 114
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 8e-46
Identities = 49/342 (14%), Positives = 100/342 (29%), Gaps = 88/342 (25%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCALR 264
L Y Y A+ L + A+ D A+
Sbjct: 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 108
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ------------------ 306
+ DI ++ +D A L L VY +
Sbjct: 109 CCQRHLDISREL----------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158
Query: 307 --NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364
+ + A + + L++ + AA NL + G +++A ++ L I
Sbjct: 159 VRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216
Query: 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424
++ + + +NL ++E YY++ L + +L D + A++ +
Sbjct: 217 AKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR-QLK-DRAVEAQSCYS 272
Query: 425 LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRAL 484
L + Y Y++A Y+ + L
Sbjct: 273 LGNTYTLLQDYEKA--------------------------------------IDYHLKHL 294
Query: 485 EIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
I + +L D + +L + Y G + +A ++ L
Sbjct: 295 AIAQ-ELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-43
Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 28/239 (11%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
L + + + A+ + E+ ++A + L Y
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFY 59
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
Y +A L + + + AK NL + ++E QR L+I
Sbjct: 60 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
+L D A+ NL + Y +GK R+
Sbjct: 118 R-ELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD-------------- 161
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A +Y+ L + LG D + + NL + + G +++A I ++Q L
Sbjct: 162 -ALQAA---VDFYEENLSLVT-ALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 48/331 (14%), Positives = 95/331 (28%), Gaps = 106/331 (32%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
L + G V + A++
Sbjct: 10 LELALEGERLCKSGDCRAGVSFFEAAVQ-------------------------------- 37
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
G D ++ + + L Y + Y +A + LT+ + A
Sbjct: 38 --------VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEA 87
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK--- 392
NL G + EA C+R L+I ++ + A+ L NL + + K
Sbjct: 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFG 145
Query: 393 -----------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
+ +Y+ L + LG D + + NL + + G +
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT-ALG-DRAAQGRAFGNLGNTHYLLGNF 203
Query: 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495
++A +++ L I + + G D
Sbjct: 204 RDA--------------------------------------VIAHEQRLLIAK-EFG-DK 223
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + +NL + Y+ G+++ A YK+ L
Sbjct: 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTL 254
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-38
Identities = 41/318 (12%), Positives = 85/318 (26%), Gaps = 85/318 (26%)
Query: 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKES 269
+ + + AV ++ L +
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--------------------- 180
Query: 270 YDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE 329
D L + +++A L I ++
Sbjct: 181 -----------------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--G 221
Query: 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389
+ AA +NL Y G+++ A K+ L + ++ K+ A+ +L
Sbjct: 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTL 279
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
YE+ Y+ + L I + +L D + +L + Y G + +A
Sbjct: 280 LQDYEKAIDYHLKHLAIAQ-ELN-DRIGEGRACWSLGNAYTALGNHDQA----------- 326
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
+ ++ LEI ++G D S + NL+
Sbjct: 327 ---------------------------MHFAEKHLEISR-EVG-DKSGELTARLNLSDLQ 357
Query: 510 LKQGK-YKEAEILYKQVL 526
+ G Y + +
Sbjct: 358 MVLGLSYSTNNSIMSENT 375
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 39/236 (16%), Positives = 67/236 (28%), Gaps = 34/236 (14%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
R NL + G + AV +Q L ++ K + A
Sbjct: 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
K++ + +Q D A L Y Y++A + L I
Sbjct: 248 EYYKKTLLLARQL----------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE-----HPDVAK 378
++ + +L Y G + +A ++ LEI +V K +++
Sbjct: 298 QEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434
L L + +L KLG S N+ L K
Sbjct: 356 LQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSM-----ENMELMKLTPEK 406
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 46/204 (22%)
Query: 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389
+ A L K G + + A+++ + + ++ + L
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFY 59
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
Y + Y+ L + +G D AK NL + G + EA
Sbjct: 60 LHDYAKALEYHHHDLTLAR-TIG-DQLGEAKASGNLGNTLKVLGNFDEAI---------- 107
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
QR L+I +L D A+ NL + Y
Sbjct: 108 ----------------------------VCCQRHLDISR-ELN-DKVGEARALYNLGNVY 137
Query: 510 LKQGKYKEAEILYKQVLTRAHERE 533
+GK R+
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRD 161
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 3e-41
Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 45/228 (19%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
+ +L VY +++ EA +K+ +H A L+ + ++
Sbjct: 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERM 78
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G + A E+ L ++ + +A + + + Y+++L
Sbjct: 79 AGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
+ + D +A L ++ EA
Sbjct: 138 Q-QAD-DQVAIACAFRGLGDLAQQEKNLLEA----------------------------- 166
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515
++++ RA +I+ +L D V + L +
Sbjct: 167 ---------QQHWLRARDIFA-ELE-DSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 6e-38
Identities = 34/220 (15%), Positives = 65/220 (29%), Gaps = 43/220 (19%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
L YA R++ A + +
Sbjct: 27 GARFMLGYVYAFMDRFDEARASFQALQQ-------------------------------- 54
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
AQ G DH L+ + +V R + A + + L E+ A +
Sbjct: 55 --QAQKSG----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAAS 107
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
A +A + G A +++L ++ + +A L L Q + E
Sbjct: 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLE 165
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
++++ RA +I+ +L D V + L +
Sbjct: 166 AQQHWLRARDIFA-ELE-DSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-24
Identities = 20/179 (11%), Positives = 45/179 (25%), Gaps = 43/179 (24%)
Query: 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412
EA + + + + L + +++E +Q + + K G
Sbjct: 4 EAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ-KSG 60
Query: 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK 472
D + + + + G + A
Sbjct: 61 -DHTAEHRALHQVGMVERMAGNWDAAR--------------------------------- 86
Query: 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
+ + E+ L D + +A+ L G A Y++ L A +
Sbjct: 87 -----RCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-39
Identities = 56/321 (17%), Positives = 110/321 (34%), Gaps = 24/321 (7%)
Query: 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274
+ H L++ Y G+ P + LE +E K L+ +L R K
Sbjct: 58 MCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLT--GLLKYYSLFFRGMYEFDQK 115
Query: 275 QAKVA--------QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKT 326
+ A + L D + A +A Y + + + AL I +
Sbjct: 116 EYVEAIGYYREAEKELPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 327 LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386
+ +L +A Y Y +A P + ALE+ + + +A L N+A
Sbjct: 175 PLYSIR-TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANS 231
Query: 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ ++Q+A ++ K + K L+ K G+ ++A ++ L
Sbjct: 232 YDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288
Query: 447 TRAHEREFGACDGDNKPIWQD-RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505
R K ++ + K E+ L +E K + + +
Sbjct: 289 DHITARS----HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSA 342
Query: 506 ASCYLKQGKYKEAEILYKQVL 526
A+ + +++A Y++VL
Sbjct: 343 AAVFESSCHFEQAAAFYRKVL 363
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 41/321 (12%), Positives = 95/321 (29%), Gaps = 57/321 (17%)
Query: 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALR---------SRKESYDIVK 274
+ Q A L + +D+++ + R K +
Sbjct: 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPT 80
Query: 275 QAKVAQILGSGGHDHPDVATMLNIL--ALVYRDQNKYKEAANLLNDALTIREKTLGENHA 332
++ + + + + ++ + DQ +Y EA +A +
Sbjct: 81 VTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDI 138
Query: 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392
A +A Y + + +AL+I + + L +A +
Sbjct: 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN-HPLYSIRTIQSLFVIAGNYDDFKH 197
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
Y++ + + ALE+ +D +A + N+A+ Y + G + A
Sbjct: 198 YDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAV------------- 242
Query: 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512
+++Q+A ++ K + K L+ K
Sbjct: 243 -------------------------EHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKA 274
Query: 513 GKYKEAEILYKQVLTRAHERE 533
G+ ++A ++ L R
Sbjct: 275 GQTQKAFQFIEEGLDHITARS 295
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKE 268
+L N+ Y G ++AV ++A + + +
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 269 SYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG 328
Q + H + L VY++ ++ ++D L+ EK
Sbjct: 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK----IHDLLSYFEK--K 329
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373
HA + A + A ++ +++A ++ L+ +E +L E
Sbjct: 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-38
Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 6/159 (3%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
L + +++A L I ++ + AA +NL Y
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIF 61
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G+++ A K+ L + ++ K+ A+ +L YE+ Y+ + L I
Sbjct: 62 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ +L D + +L + Y G + +A ++ L
Sbjct: 120 Q-ELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-33
Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 44/197 (22%)
Query: 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389
+ AA NL + G +++A ++ L I ++ + +NL
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIF 61
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
++E YY++ L + +L D + A++ +L + Y Y++A
Sbjct: 62 LGEFETASEYYKKTLLLAR-QLK-DRAVEAQSCYSLGNTYTLLQDYEKA----------- 108
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
Y+ + L I + +L D + +L + Y
Sbjct: 109 ---------------------------IDYHLKHLAIAQ-ELK-DRIGEGRACWSLGNAY 139
Query: 510 LKQGKYKEAEILYKQVL 526
G + +A ++ L
Sbjct: 140 TALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 6e-22
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 24/165 (14%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
R NL + G + AV +Q L ++ K + A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
K++ + +Q D A L Y Y++A + L I
Sbjct: 70 EYYKKTLLLARQL----------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368
++ ++ +L Y G + +A ++ LEI +V
Sbjct: 120 QEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 7e-37
Identities = 34/240 (14%), Positives = 93/240 (38%), Gaps = 10/240 (4%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
D + A ++ Y + + + A I ++ N + + A +
Sbjct: 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR-LLQCHSLFATNFL 195
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+Y++A ++A + E K+ + + L N+ L +QS+YE+ Y++RA+ +
Sbjct: 196 DLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
+E + ++ + + + K GK +A + + + + + + + +
Sbjct: 254 FE-ESN-ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + + LE L +++ ++A Y ++ +++A + +V
Sbjct: 312 LYLSGPDEEAIQGFFDFLESKMLY-----ADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 36/321 (11%), Positives = 98/321 (30%), Gaps = 58/321 (18%)
Query: 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAE-----------TLEDCALRSRKESYDI 272
Y + A L ++ ++L++ + LE + +
Sbjct: 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQ 80
Query: 273 VKQAKVAQILGSGGHDHPDVATMLN--ILALVYRDQNKYKEAANLLNDALTIREKTLGEN 330
+ + + + + + DQ +Y A A + ++
Sbjct: 81 PRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KD 138
Query: 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
A ++ Y + + ++A EI ++ + + + + A +
Sbjct: 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDL 197
Query: 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450
+YE+ ++Q+A + E + +T N+ C Q +Y++A
Sbjct: 198 KQYEDAISHFQKAYSMAE-AEK-QPQLMGRTLYNIGLCKNSQSQYEDA------------ 243
Query: 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510
Y++RA+ ++E + ++ + + +
Sbjct: 244 --------------------------IPYFKRAIAVFE-ESN-ILPSLPQAYFLITQIHY 275
Query: 511 KQGKYKEAEILYKQVLTRAHE 531
K GK +A + + + + +
Sbjct: 276 KLGKIDKAHEYHSKGMAYSQK 296
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 30/244 (12%), Positives = 81/244 (33%), Gaps = 34/244 (13%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG-KYEAAETLE------------DCA 262
+ Y + ++ +QA E ++ + + A
Sbjct: 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203
Query: 263 LRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTI 322
+ +++Y + + K + L + L Q++Y++A A+ +
Sbjct: 204 ISHFQKAYSMAEAEK----------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
Query: 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
E++ ++ + ++ K GK +A + + +K + + L +
Sbjct: 254 FEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311
Query: 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
L EE + + LE L +++ ++A Y ++ +++A +
Sbjct: 312 LY----LSGPDEEAIQGFFDFLESKMLY-----ADLEDFAIDVAKYYHERKNFQKASAYF 362
Query: 443 KQVL 446
+V
Sbjct: 363 LKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 19/203 (9%), Positives = 55/203 (27%), Gaps = 55/203 (27%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
+ + +YE A+ ++A E TL + A+
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
K + + +++ P + ++ ++ K +A + +
Sbjct: 245 PYFKRAIAVFEESN----------ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294
Query: 324 EKTLGENHAA---------------------------------VAATLNNLAVLYGKRGK 350
+K + + + ++A Y +R
Sbjct: 295 QKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKN 354
Query: 351 YKEAEPLCKRALEIREKVLGKEH 373
+++A + ++R+ + G
Sbjct: 355 FQKASAYFLKVEQVRQLIQGGVS 377
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-31
Identities = 50/333 (15%), Positives = 99/333 (29%), Gaps = 82/333 (24%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P L L + R + + A++ ++ K G+ + A
Sbjct: 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI-- 87
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
E Y ++ PD LA + A
Sbjct: 88 ---------EHYR-----HALRL-------KPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
AL + ++L L G+ +EA+ +A+E + P+ A
Sbjct: 127 ALQYNPD--------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--------PNFAV 170
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
+NL + Q + ++++A+ + D N NL + + + A
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRA 222
Query: 439 EILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGP 493
Y + L + ++ + + ++ Y+RA+E+
Sbjct: 223 VAAYLRAL---------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------- 266
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ NLA+ ++G EAE Y L
Sbjct: 267 -QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 9e-31
Identities = 64/327 (19%), Positives = 106/327 (32%), Gaps = 82/327 (25%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
NL + G E AV AL+ +L K G+ E A+
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK-------- 155
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
Y K + P+ A + L V+ Q + A + A+T+
Sbjct: 156 ---ACYL-----KAIET-------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
NL + + + A RAL + P+ A NLA
Sbjct: 201 N--------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLA 244
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ Q + Y+RA+E+ + NLA+ ++G EAE Y
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 445 VLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
L + + ++ + + Y++ALE+ A
Sbjct: 297 AL---------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFA 339
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
+NLAS +QGK +EA + YK+ +
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-30
Identities = 53/327 (16%), Positives = 96/327 (29%), Gaps = 82/327 (25%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALED-------------LEKTSGKYEAAETLEDCALR 264
L + G +E A C Q + + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSA-------- 53
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ +P +A + L VY+++ + +EA AL ++
Sbjct: 54 ---HFST-----LAIKQ-------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
NLA G + A AL+ PD+ ++L
Sbjct: 99 D--------FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------PDLYCVRSDLG 142
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
L + + EE + Y +A+E N A +NL + QG+ A +++
Sbjct: 143 NLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194
Query: 445 VLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
+ D + + + + Y RAL + N A
Sbjct: 195 AV---------TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHA 237
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
NLA Y +QG A Y++ +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAI 264
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 6e-26
Identities = 54/313 (17%), Positives = 96/313 (30%), Gaps = 82/313 (26%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRS 265
+L + GR E A +A+E + G+ A
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI--------- 189
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
++ K + P+ L V ++ + A AL++
Sbjct: 190 --HHFE-----KAVTL-------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
A NLA +Y ++G A +RA+E++ P NLA
Sbjct: 236 --------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLAN 279
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
+ + E E Y AL + A + NNLA+ +QG +EA LY++
Sbjct: 280 ALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKA 331
Query: 446 LTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500
L + + Q+ K + +Y+ A+ I A
Sbjct: 332 L---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFAD 374
Query: 501 TKNNLASCYLKQG 513
+N+ + +
Sbjct: 375 AYSNMGNTLKEMQ 387
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 122 bits (306), Expect = 1e-30
Identities = 41/320 (12%), Positives = 84/320 (26%), Gaps = 25/320 (7%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEA-AETLEDCALRSRKESYDIVKQAKVAQILG 283
+ G + A L K ALE+L A ++ L + E + + + +
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAV 343
L + + Q + A A + + E + A
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143
Query: 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
L + EAE + +E+ + + L L + + R
Sbjct: 144 LLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463
+ ++ + G A + + N
Sbjct: 201 ENLLG-NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---------EFANNH 250
Query: 464 IWQDRQKNKAKNR---------EKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
Q + +N A+ + E + E D + + L Y + G+
Sbjct: 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD--LNRNLLLLNQLYWQAGR 308
Query: 515 YKEAEILYKQVLTRAHEREF 534
+A+ + L A+ F
Sbjct: 309 KSDAQRVLLDALKLANRTGF 328
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 34/278 (12%), Positives = 74/278 (26%), Gaps = 59/278 (21%)
Query: 249 SGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNK 308
+ K A A + K S D+ A+ A+ +++ +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTS------------FMKWKPDYDSAASEYAKAAVAFKNAKQ 51
Query: 309 YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368
++A + HAA A ++ + EA ++A + +
Sbjct: 52 LEQAKDAYLQEAEAHANNRSLFHAAKA--FEQAGMMLKDLQRMPEAVQYIEKASVMYVE- 108
Query: 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428
A L+ L + + YQ+A ++E A+ +
Sbjct: 109 -NGTPDTAAMALDRAGKLMEPL-DLSKAVHLYQQAAAVFE--NEERLRQAAELIGKASRL 164
Query: 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488
++Q K+ EA Q+ +Y+
Sbjct: 165 LVRQQKFDEA--------------------------------------AASLQKEKSMYK 186
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++ + K L + Y A+ ++
Sbjct: 187 -EME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 1e-21
Identities = 30/214 (14%), Positives = 72/214 (33%), Gaps = 11/214 (5%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYDIVKQ 275
+ + + + E A Q E + AA+ E L+ + + V+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
+ A ++ A L+ + + +A +L A + E E A
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENE--ERLRQAA 155
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
+ + L ++ K+ EA ++ + +++ + +P K+ L+ +++ Y
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVA 213
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429
++ + + I S +L Y
Sbjct: 214 AQKCVRESYSIPGF----SGSEDCAALEDLLQAY 243
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-21
Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 48/229 (20%)
Query: 306 QNKYKEAANLLNDALTIREKTL---GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362
K EA + A + + ++ + A+ AV + + ++A+ +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Query: 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422
E + AK ++ ++ + E +Y ++A +Y PD A
Sbjct: 64 EAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD--TAAMAL 119
Query: 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQR 482
+ + +A YQ+
Sbjct: 120 DRAGKLM-EPLDLSKAV--------------------------------------HLYQQ 140
Query: 483 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
A ++E A+ + ++Q K+ EA ++ + E
Sbjct: 141 AAAVFEN--EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 7e-07
Identities = 23/174 (13%), Positives = 43/174 (24%), Gaps = 44/174 (25%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
+ + AV L +QA E
Sbjct: 117 MALDRAGKLMEPLDLSKAVHLYQQAAAVFENE---------------------------- 148
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
A ++ + + Q K+ EAA L ++ ++ EN+
Sbjct: 149 ----------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYK 196
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
++ R Y A+ + + I G + L +L Q
Sbjct: 197 KCIAQVLVQLHRADYVAAQKCVRESYSI----PGFSGSEDCAALEDLLQAYDEQ 246
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 2e-23
Identities = 30/249 (12%), Positives = 70/249 (28%), Gaps = 44/249 (17%)
Query: 289 HPDVATMLNILALVYRDQNKYKEA---ANLLNDALTIREKTLGENHAAVAATLNNLAVLY 345
+ + N A+ Y + KY A + + +A +
Sbjct: 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA--------KSADFEYYGKIL 84
Query: 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405
K+G+ A + A++ + N+ + +Y ++ +
Sbjct: 85 MKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465
+ K L Y +Y +A+ + +VL + +
Sbjct: 137 P--------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---------KPNIYIGY 179
Query: 466 QDR--------QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517
R K + YY++ +E+ + + +A Y +
Sbjct: 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239
Query: 518 AEILYKQVL 526
A+ +K +L
Sbjct: 240 ADAAWKNIL 248
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 33/233 (14%), Positives = 70/233 (30%), Gaps = 40/233 (17%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
A N Y EA + N + + N AV Y + KY A+
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNS--------PYIYNRRAVCYYELAKYDLAQ--- 57
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
+ +E + + + + + + YQ A++ D+
Sbjct: 58 -KDIETYFSKV-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTR 107
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREK 478
+ S + +G + A ++ + + ++ + +A K
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQI---------RPTTTDPKVFYEL--GQAYYYNK 156
Query: 479 YYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQG---KYKEAEILYKQVL 526
Y +A + L+L P+ A Q K A+ Y++++
Sbjct: 157 EYVKADSSFVKVLELKPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 19/149 (12%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY---G 346
+ L Y +Y +A + L ++ A
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI--------YIGYLWRARANAAQD 190
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K A+P ++ +E+ K ++ + +A + + ++ L +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKY 435
D K + L +
Sbjct: 251 --------DPTNKKAIDGLKMKLEHHHHH 271
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 43/326 (13%), Positives = 82/326 (25%), Gaps = 73/326 (22%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALR 264
L + R+ + + + LE +L+ SG+
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY-------- 359
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ + HP+ A + + Y NK EA + + T+
Sbjct: 360 ---LISN-----DLVDR-------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ A + G++ +A A + L
Sbjct: 405 QF--------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------QGTHLPYLFLG 448
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ Y Q + ++ D + N L + + A ++
Sbjct: 449 MQHMQLGNILLANEYLQSSYALF-----QYDPLLL---NELGVVAFNKSDMQTAINHFQN 500
Query: 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAK--NREKYYQRALEIYE--LKLGPDDSNVAK 500
L N+ W N + K Y A++ L L +D A
Sbjct: 501 AL------LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND---AN 551
Query: 501 TKNNLASCYLKQGKYKEAEILYKQVL 526
+A YL + A + L
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 50/329 (15%), Positives = 91/329 (27%), Gaps = 48/329 (14%)
Query: 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDC-----AL 263
+I L Y G Y A L + ++ +Y AA L AL
Sbjct: 111 LDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGAL 170
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
E+ K K A L A+M + VY + + + A +AL +
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383
K + L + + L++ KE + L L
Sbjct: 231 AKC--------YEAFDQLVSNHLLTADEEWDL-----VLKLNYSTYSKEDAAFLRSLYML 277
Query: 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443
L + Y ++ S++ A + ++ + +
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGL-----EKSSDL---LLCKADTLFVRSRFIDVLAITT 329
Query: 444 QVLTRAHERE-----FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498
++L A + + +KNK ++ + P+
Sbjct: 330 KILEIDPYNLDVYPLHLAS------LHESGEKNKL---YLISNDLVDRH-----PEK--- 372
Query: 499 AKTKNNLASCYLKQGKYKEAEILYKQVLT 527
A T + YL K EA + + T
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSST 401
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 1e-22
Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 68/237 (28%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ L L Y + ++A L AL I A LAV++
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--------SADAHAALAVVFQTEM 85
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+ K A+ ++AL A+ LNN Q +YEE + A +
Sbjct: 86 EPKLADEEYRKALASD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD--- 134
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
++ NL L+ K +A
Sbjct: 135 ---TLYPERSRVFENLGLVSLQMKKPAQA------------------------------- 160
Query: 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++Y++++L + + N +A K+ +Y A Y
Sbjct: 161 -------KEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFA 202
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 4e-18
Identities = 38/235 (16%), Positives = 68/235 (28%), Gaps = 66/235 (28%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
L + Y +G E A ++ALE
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALE---------------------------- 65
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
P A LA+V++ + + K A AL +
Sbjct: 66 ----------------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----- 104
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
A LNN ++ +Y+EA A + P+ ++ NL L+
Sbjct: 105 ---ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY------PERSRVFENLGLVSLQMK 155
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
K + + Y++++L + + N +A K+ +Y A Y
Sbjct: 156 KPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFA 202
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 31/151 (20%)
Query: 381 NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440
++ + + + + + K + L YL++G ++A++
Sbjct: 8 HHHSSGLVPRGSHMGDQNPLK------TDKGRDEA---RDAYIQLGLGYLQRGNTEQAKV 58
Query: 441 LYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDD 495
++ L D + + + K ++ Y++AL D
Sbjct: 59 PLRKAL---------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--------D 101
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
S A+ NN +Q +Y+EA +
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 45/312 (14%), Positives = 94/312 (30%), Gaps = 42/312 (13%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277
+ +L ++ +++ L +E K + K + K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAA-NLLNDALTIREKTLGENHAAVAA 336
+ + +P + Y E A L+ A T+ KT G
Sbjct: 82 LVDL-------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAW----- 128
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEV 396
+ ++ +A A ++ + + L + +
Sbjct: 129 --IAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGLTNNSKLA 178
Query: 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456
ER++ +AL I P+D V + + + G++K AE + L +
Sbjct: 179 ERFFSQALSIA-----PEDPFVM---HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230
Query: 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGK 514
+P+ + K Y AL+ + L L P + A T + + + G
Sbjct: 231 TVDKWEPLL--NNLGHVCRKLKKYAEALDYHRQALVLIPQN---ASTYSAIGYIHSLMGN 285
Query: 515 YKEAEILYKQVL 526
++ A + L
Sbjct: 286 FENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 7e-19
Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV-AATLNNLAVLYGK 347
P+ +++ + +V ++K A DAL + E LNNL + K
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
KY EA ++AL + P A + + + +E Y+ AL +
Sbjct: 249 LKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL- 299
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
+ + L C EA I
Sbjct: 300 -------RRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 50/265 (18%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
++ DV + LA + +K L + + HA+ L
Sbjct: 19 QENLDV---VVSLAERHYYNCDFKMCYKLTSVVMEKDP-----FHASC---LPVHIGTLV 67
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-YEEVERYYQRALE 405
+ K E L + +++ +P + E RY +A
Sbjct: 68 ELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465
+ + + + ++ +A Y
Sbjct: 120 L--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA---------QLMKGCHLPM 162
Query: 466 -----QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520
+ N +K E+++ +AL I P+D V + + + G++K AE
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIA-----PEDPFVM---HEVGVVAFQNGEWKTAEK 214
Query: 521 LYKQVLTRAHEREFGACDGDNKPIW 545
+ L + +P+
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLL 239
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 9e-12
Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 45/225 (20%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
+ K + ++ +++ L EN + +LA + +K L +E
Sbjct: 2 SYNKPSETVIPESV----DGLQEN----LDVVVSLAERHYYNCDFKMCYKLTSVVMEK-- 51
Query: 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426
P A L +K E+ + +++Y P + + +
Sbjct: 52 ------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-----PSN---PVSWFAVG 97
Query: 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNRE-----KYYQ 481
YL G E Y L++A + P W + A E Y
Sbjct: 98 CYYLMVGHKNEHARRY---LSKATT-----LEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149
Query: 482 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A ++ + Y K AE + Q L
Sbjct: 150 TAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 43/191 (22%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
+ + ++Y ++A QAL + +G+++ AE AL
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
K + V +LN L V R KY EA + AL +
Sbjct: 222 KIKAIGNEVTV--------------DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ A+T + + ++ G ++ A AL +R D + L
Sbjct: 268 QN--------ASTYSAIGYIHSLMGNFENAVDYFHTALGLR--------RDDTFSVTMLG 311
Query: 385 LLCQNQSKYEE 395
+ E
Sbjct: 312 HCIEMYIGDSE 322
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 19/179 (10%), Positives = 52/179 (29%), Gaps = 28/179 (15%)
Query: 349 GKY-KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G Y K +E + +++ +E+ DV + +LA ++ + +E
Sbjct: 1 GSYNKPSETVIPESVDGL-----QENLDV---VVSLAERHYYNCDFKMCYKLTSVVMEKD 52
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
P ++ ++ K E L +++ +
Sbjct: 53 -----PFHASCL---PVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF---AVGCYYL 101
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+K ++ +Y +A + + + + ++ +A Y
Sbjct: 102 MVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 4e-22
Identities = 44/242 (18%), Positives = 72/242 (29%), Gaps = 69/242 (28%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
V+ + LA+ Y Y++A + DAL K A +Y
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--------NELAWLVRAEIYQY 54
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL-ALLCQNQSKYEEVERYYQRALEI 406
+A+ ++AL I+ PD A+ NN LC ++ E Y+ +AL
Sbjct: 55 LKVNDKAQESFRQALSIK--------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD 106
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
P N C KQG++ A
Sbjct: 107 ------PTYPTPYIANLNKGICSAKQGQFGLA---------------------------- 132
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
E Y +R+L LA + G+ +A+ +K+
Sbjct: 133 ----------EAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 527 TR 528
+R
Sbjct: 175 SR 176
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 34/249 (13%), Positives = 67/249 (26%), Gaps = 61/249 (24%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
L ++Y Y A + AL+ ++ + + A+
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ-- 62
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ-NKYKEAANLLN 317
ES+ + I PD A + N + N+ E+ +
Sbjct: 63 ---------ESFR-----QALSI-------KPDSAEINNNYGWFLCGRLNRPAESMAYFD 101
Query: 318 DALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377
AL N + K+G++ AE KR+L + P
Sbjct: 102 KALADPTY------PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--------PQFP 147
Query: 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
LA + + + Y+++ E ++L +
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVE----------VLQADDLLLGWKIAKALGN 197
Query: 438 AEILYKQVL 446
A+ Y+
Sbjct: 198 AQAAYEYEA 206
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 92.5 bits (231), Expect = 6e-22
Identities = 34/237 (14%), Positives = 58/237 (24%), Gaps = 70/237 (29%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ + +Y +A LL V +L + Y K G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----AFDVDV---ALHLGIAYVKTG 56
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
L +R+L PD K L L KY+ + E
Sbjct: 57 AVDRGTELLERSLADA--------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--- 105
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ + L G++ EA
Sbjct: 106 -----NPINFNVRFRLGVALDNLGRFDEA------------------------------- 129
Query: 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++ AL + N K +A Y + G+++EA +K+
Sbjct: 130 -------IDSFKIALGL--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 68.6 bits (169), Expect = 9e-14
Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 52/201 (25%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
+ I +A GRY AV L +Q + D++ +G +
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGT--------- 62
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
E + + PD + +L L Y KY A LL
Sbjct: 63 --ELLE-----RSLAD-------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
L V G++ EA K AL +R P+ K +A
Sbjct: 109 --------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------PNEGKVHRAIAF 152
Query: 386 LCQNQSKYEEVERYYQRALEI 406
+ ++EE ++++A E+
Sbjct: 153 SYEQMGRHEEALPHFKKANEL 173
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 46/231 (19%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ A A + N+ + A + AL + A +Y +
Sbjct: 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSS--------AATAYYGAGNVYVVKE 105
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
YKEA+ + ++AL + L + + + Y QRA+E+
Sbjct: 106 MYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--- 154
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR- 468
+ N + + C +G EA + V D + + +
Sbjct: 155 -----NENDTEARFQFGMCLANEGMLDEALSQFAAVT---------EQDPGHADAFYNAG 200
Query: 469 ----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515
K + + +A++I + + +
Sbjct: 201 VTYAYKENREKALEMLDKAIDI--------QPDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 49/226 (21%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+ + ++ L+ + + T + G Y++A +A+E
Sbjct: 5 HHHHHHSSGLVPRGSHMA-----------SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN 53
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
+ A N A L + ++ E +Y +ALE+ DS+ A
Sbjct: 54 --------KEDAIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGA 97
Query: 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYY 480
+ Y+ + YKEA+ ++++ L +N ++ + + K Y
Sbjct: 98 GNVYVVKEMYKEAKDMFEKAL---------RAGMENGDLFYMLGTVLVKLEQPKLALPYL 148
Query: 481 QRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
QRA+E+ + N + + C +G EA + V
Sbjct: 149 QRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVT 186
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 6e-15
Identities = 27/230 (11%), Positives = 54/230 (23%), Gaps = 60/230 (26%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRS 265
N +S E A+ +ALE ++ Y+ A+
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK--------- 111
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ ++ K + + + +L V + K A L A+ + E
Sbjct: 112 --DMFE-----KALRA-------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
+ G EA E P A N +
Sbjct: 158 --------DTEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGV 201
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
+ E+ +A++I + + +
Sbjct: 202 TYAYKENREKALEMLDKAIDI--------QPDHMLALHAKKLLGHHHHHH 243
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 7e-21
Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 16/242 (6%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTI-REKTLGENHAAVAATLNNLAVLYG 346
+ ATM N+LA + + + + A L A + +++ + T N A +Y
Sbjct: 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY 105
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL--ALLCQNQSKYEEVERYYQRAL 404
G+ + + + + EK + + L ++ E + +++AL
Sbjct: 106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165
Query: 405 EIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPI 464
E P + + + A +Q + + ++ K
Sbjct: 166 EKK-----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220
Query: 465 WQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 524
+ + EK + ALE V + A Y ++ + +A L K+
Sbjct: 221 KMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 525 VL 526
L
Sbjct: 273 AL 274
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 9e-21
Identities = 47/338 (13%), Positives = 99/338 (29%), Gaps = 47/338 (13%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLED-----CALRSR 266
+ + L +G+ E A+ ++A E +++ +L
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 267 KESYD----IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTI 322
D + K V + S + N+ + A AL
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
+ + + L + + A ++A+ + +PD
Sbjct: 168 K-----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVL 214
Query: 383 LALLCQNQSK----YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
LAL + E E+ + ALE V + A Y ++ + +A
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKA 266
Query: 439 EILYKQVLTRAHEREF-----GACDGDNKPIWQDRQKNKAKNREK---YYQRALEIYE-- 488
L K+ L + G C + ++N + K A+ +
Sbjct: 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + + + LAS + +Y+EAE +++
Sbjct: 327 DEANDNL---FRVCSILASLHALADQYEEAEYYFQKEF 361
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 91.5 bits (227), Expect = 8e-20
Identities = 48/337 (14%), Positives = 108/337 (32%), Gaps = 62/337 (18%)
Query: 225 YASQGRYEVAVPLCKQALE----DLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQ 280
+ E A ++ALE + E TSG A+ L++ + + D ++QA
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--WPPSQNAIDPLRQAI--- 202
Query: 281 ILGSGGHDHPDVATML-NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLN 339
D+ + +L L + + + E L+ +AL L
Sbjct: 203 ---RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--------TDVLR 251
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK------- 392
+ A Y ++ + +A L K+ALE P+ A + + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRE 303
Query: 393 -----YEEVERYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
++ A+ + + + + + LAS + +Y+EAE +++
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNL---FRVCSILASLHALADQYEEAEYYFQKE 360
Query: 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE----------------L 489
++ +Q Q ++ ++I +
Sbjct: 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420
Query: 490 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ ++ + LA K ++A+ ++ L
Sbjct: 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 36/227 (15%), Positives = 79/227 (34%), Gaps = 16/227 (7%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
N + +L + + +T +N A N LA L +G+ + A ++A E+ +
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 367 KVLGKE-HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
+ + N A + + + +V+ Y + + E P +
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142
Query: 426 ASCYLK--QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRA 483
LK + + A++ +++ L + G ++ ++N ++A
Sbjct: 143 GWTRLKCGGNQNERAKVCFEKAL-EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201
Query: 484 LEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEILYKQVL 526
+ + PD+ K LA K + E E L ++ L
Sbjct: 202 IRLN-----PDN---QYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 42/306 (13%), Positives = 87/306 (28%), Gaps = 55/306 (17%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
L + + + A+ +QA+ + + K A L +E
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
+ + P V +L A YR +++ +A LL AL A
Sbjct: 238 EALEK-------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--------AY 282
Query: 337 TLNNLAVLYGKRGK------------YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ Y + ++ L A+ +K + + ++ + + LA
Sbjct: 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EANDNLFRVCSILA 341
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-YKEAEILYK 443
L +YEE E Y+Q+ + L Q K +A +
Sbjct: 342 SLHALADQYEEAEYYFQKEFS-----KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396
Query: 444 QVL------TRAHEREFGACDGDNKPIWQD--------------RQKNKAKNREKYYQRA 483
+ + + + + ++ K + ++ +R
Sbjct: 397 EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
Query: 484 LEIYEL 489
LE L
Sbjct: 457 LESGSL 462
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-20
Identities = 58/414 (14%), Positives = 117/414 (28%), Gaps = 61/414 (14%)
Query: 129 QSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDND 188
S E + ++ + D+ Q + + K P +
Sbjct: 108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE---NLPSVTSM 164
Query: 189 DRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 248
P FA + + L NL S Y+ A +A E+
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNL--YKRSPESYDKADESFTKAARLFEEQ 222
Query: 249 SGKYEAAETLEDC---ALRSRKESYDIVKQAKVA--------QILGSGGHDHPDVATMLN 297
K E L++ +L + A ++ P V +
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-------FPRVNS-YI 274
Query: 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPL 357
+AL+ D+N E N + AL + ++ + + Y +A
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSN--------NSSVYYHRGQMNFILQNYDQAGKD 326
Query: 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417
+A E+ P+ LA L ++K+++ E + A
Sbjct: 327 FDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPE 370
Query: 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF-----GACDGDNKPIWQDRQKNK 472
+ N A + + +A Y + ++ + G + ++
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++A ++ D + K LA L+Q EA L+++
Sbjct: 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 43/350 (12%), Positives = 84/350 (24%), Gaps = 69/350 (19%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE--------------------DLEKTSGKYEAAETL 258
NL Y S G + V + +ALE
Sbjct: 43 SNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102
Query: 259 EDCALRSRKESYDIV-----------KQAKVAQILGSGGHDHPDVATMLNILALVYRDQN 307
D S + + K + + A
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ LT N A + Y +A+ +A + E+
Sbjct: 163 SMASFFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221
Query: 368 VL------GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421
L K +A L + + ++ ++A+E++ P +
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-----PR----VNS 272
Query: 422 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNR 476
+A + E + + L D +N ++ R
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKAL---------KLDSNNSSVYYHRGQMNFILQNYDQA 323
Query: 477 EKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
K + +A E+ D LA ++ K+ + E L+ +
Sbjct: 324 GKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAK 365
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 33/244 (13%), Positives = 63/244 (25%), Gaps = 23/244 (9%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
+ A L + KY +A N AL ++E +NL+ Y
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED---------PVFYSNLSACYVS 51
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G K+ + +ALE+ PD +K L A + K+ +
Sbjct: 52 VGDLKKVVEMSTKALEL--------KPDYSKVLLRRASANEGLGKFADAMFDLSVL---- 99
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
L +D++ + K KE E
Sbjct: 100 SLNGDFNDAS-IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+ ++ L ++++ Y +A+ + +
Sbjct: 159 PSVTSMASFFGIFKPELTFANYD-ESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 528 RAHE 531
E
Sbjct: 218 LFEE 221
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 32/316 (10%), Positives = 73/316 (23%), Gaps = 65/316 (20%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQA--LEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
L G++ A+ D S + L A+ KE + +
Sbjct: 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135
Query: 276 AKVAQILGSGGHD----HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
A S + K + +++ E +
Sbjct: 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN---EADKELMN 192
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
+ + +A L + L+ + K +A L + + ++
Sbjct: 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE-KLKEKLAISLEHTGIFKFLKN 251
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
++A+E++ P + +A + E
Sbjct: 252 DPLGAHEDIKKAIELF-----PR----VNSYIYMALIMADRNDSTEYY------------ 290
Query: 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511
Y+ +AL++ DSN + +
Sbjct: 291 --------------------------NYFDKALKL--------DSNNSSVYYHRGQMNFI 316
Query: 512 QGKYKEAEILYKQVLT 527
Y +A + +
Sbjct: 317 LQNYDQAGKDFDKAKE 332
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 42/254 (16%), Positives = 72/254 (28%), Gaps = 40/254 (15%)
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
A++ QIL S + A +L ++Y A N + AL IR
Sbjct: 26 ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM--------P 77
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
N L + + G + A LE+ P N + + +
Sbjct: 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGRDKL 129
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455
+ + D N L K + K+A+ + KQ ++
Sbjct: 130 AQDDLLAFYQD--------DPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSD----- 175
Query: 456 ACDGDNKPIWQDRQKNKAKNREK-YYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQ 512
+ W + E+ +R L ++T L YL
Sbjct: 176 ----KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL---SETNFYLGKYYLSL 228
Query: 513 GKYKEAEILYKQVL 526
G A L+K +
Sbjct: 229 GDLDSATALFKLAV 242
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 35/242 (14%), Positives = 64/242 (26%), Gaps = 58/242 (23%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
L+ + Y S G +A QAL +G ++AA
Sbjct: 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY-------- 97
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
E++D V ++ P + + K A + L
Sbjct: 98 ---EAFD-----SVLEL-------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
L + K + + E L + + KE L
Sbjct: 143 N--------DPFRSLWLYLAEQKLDEKQAKEVLKQHF-----EKSDKEQWGWNIVEFYLG 189
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ Q+ E ++ + ++++T L YL G A L+K
Sbjct: 190 NI-SEQTLMERLKADATDNTSL--------AEHLSETNFYLGKYYLSLGDLDSATALFKL 240
Query: 445 VL 446
+
Sbjct: 241 AV 242
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 20/152 (13%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
++ LA+ Q + E + ++ L L D A+ Y G
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALT----DDERAQLLYERGVLYDSLGLRA 60
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPD 494
A + Q L A D ++ + + A E ++ L+L P
Sbjct: 61 LARNDFSQAL---------AIRPDMPEVFNYL--GIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 495 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
N G+ K A+
Sbjct: 110 Y---NYAHLNRGIALYYGGRDKLAQDDLLAFY 138
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/189 (12%), Positives = 51/189 (26%), Gaps = 34/189 (17%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLEKTSGKYEAAETLEDC-ALRSRKESYDIV 273
N I GR ++A + D ++ Y A + L++ A K+ ++
Sbjct: 115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174
Query: 274 KQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA 333
+ + + L + +Q + D ++ E
Sbjct: 175 DK------------EQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEH-------- 213
Query: 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY 393
++ T L Y G A L K A+ + L +
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANN--------VHNFVEHRYALLELSLLGQD 265
Query: 394 EEVERYYQR 402
++ +
Sbjct: 266 QDDLAESDQ 274
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 6e-20
Identities = 38/327 (11%), Positives = 76/327 (23%), Gaps = 89/327 (27%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE------------DLEKTSGKYEAAETLE 259
L I + + A L ++++ +
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFF--- 296
Query: 260 DCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDA 319
+ + K + +P+ +Y YK A A
Sbjct: 297 --------KFFQ-----KAVDL-------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
Query: 320 LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379
++ + LA L K+GK+ E+E P + +
Sbjct: 337 QSLNPE--------NVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEV 380
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
A + ++ ++ + Y A + + K + K
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRL--------EEVQEKIHVGIGPLIGKATILARQ- 431
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
+ + K K +A E+ D
Sbjct: 432 ---------------------SSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSE 462
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K LA L+ K EA L++
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-18
Identities = 40/336 (11%), Positives = 95/336 (28%), Gaps = 55/336 (16%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKY-EAAETLEDCALR 264
N+ Y S G E + +ALE ++ G + +A L +L
Sbjct: 63 SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ I + + + +++ + V + + L +
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182
Query: 325 KTLGENHAAVAATLNN---------LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375
N+ A L++ ++ + L +
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD-PLREN 241
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
A L + ++ + + Q ++ ++ P + LA +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH-----PT----PNSYIFLALTLADKENS 292
Query: 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELK 490
+E +++ + + + P + R KN ++ +Q+A +
Sbjct: 293 QEFFKFFQKAV---------DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL---- 339
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ LA KQGK+ E+E + +
Sbjct: 340 ----NPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 4e-18
Identities = 27/306 (8%), Positives = 85/306 (27%), Gaps = 35/306 (11%)
Query: 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283
+ + A+ + + L E + + T ++ +
Sbjct: 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191
Query: 284 SGGHDHPDVATMLN-ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLA 342
+ + + + + ++ ++ + L+ A L
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD-PLRENAALALCYTG 250
Query: 343 VLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
+ + + +A+ L + ++ + LAL ++ +E +++Q+
Sbjct: 251 IFHFLKNNLLDAQVLLQESINLHPT---------PNSYIFLALTLADKENSQEFFKFFQK 301
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462
A+++ + T + Y YK A+ +++ + + +N
Sbjct: 302 AVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ---------SLNPENV 344
Query: 463 PIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520
+ Q ++ + + + P + A +G + A
Sbjct: 345 YPY--IQLACLLYKQGKFTESEAFFNETKLKFPTL---PEVPTFFAEILTDRGDFDTAIK 399
Query: 521 LYKQVL 526
Y
Sbjct: 400 QYDIAK 405
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 33/227 (14%), Positives = 59/227 (25%), Gaps = 36/227 (15%)
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ + + A A L N + + EA + A+E+
Sbjct: 2 SHMNGEPDIAQLKGLSP----SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--- 54
Query: 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427
P+ +N++ + E+V + +ALEI + +K AS
Sbjct: 55 -----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--------KPDHSKALLRRAS 101
Query: 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487
G + +A + D D I ++N K K L
Sbjct: 102 ANESLGNFTDAMFDLSVLSLNG--------DFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 488 ELKLGPDDSNVAKTKNNLAS--------CYLKQGKYKEAEILYKQVL 526
E + + + Y A L L
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDAL 200
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 7e-14
Identities = 28/238 (11%), Positives = 56/238 (23%), Gaps = 22/238 (9%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P+ + ++ Y ++ AL I+ + L A
Sbjct: 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--------HSKALLRRASANESL 106
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
G + +A + P + + LN A+ N E + + R ++
Sbjct: 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLN----ENLSKDEGRGSQVLP 162
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
+ S Y A L L
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDAL---------QRLYSATDEGYLV 213
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ Y L P N A + + +A++L ++ +
Sbjct: 214 ANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 58/177 (32%)
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
G + EP + + + A QL N + E +YYQ A+E+
Sbjct: 1 GSHMNGEPDIAQLKGLSPS----QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-- 54
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
D N +N+++CY+ G ++
Sbjct: 55 ------DPNEPVFYSNISACYISTGDLEKV------------------------------ 78
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525
++ +ALEI + +K AS G + +A +
Sbjct: 79 --------IEFTTKALEI--------KPDHSKALLRRASANESLGNFTDAMFDLSVL 119
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 9e-20
Identities = 34/239 (14%), Positives = 54/239 (22%), Gaps = 43/239 (17%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L EAA +L + + K A
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAP-----EREEA---WRSLGLTQAENEKDGLAIIAL 78
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI-------YELKL 411
A + P LA+ N+ + L + L
Sbjct: 79 NHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN 471
D + + +Y+E L L P +
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-------------NPNDAQLHAS 177
Query: 472 K--AKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
N Y A ++L PDD A+ N L + + +EA Y + L
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAYNRAL 233
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-19
Identities = 42/249 (16%), Positives = 72/249 (28%), Gaps = 45/249 (18%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P+ L L + K A LN A + AV LAV +
Sbjct: 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PKDIAV---HAALAVSHTNEH 103
Query: 350 KYKEAEPLCKRALEIREK-------VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
A + L + + L + + + ++Y E
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462
ALE+ P+D A+ +L Y Y A ++ + D+
Sbjct: 164 ALEMN-----PND---AQLHASLGVLYNLSNNYDSAAANLRRAV---------ELRPDDA 206
Query: 463 PIWQDR---QKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517
+W N + +E Y RAL+I + + N+A Y +Y
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDL 258
Query: 518 AEILYKQVL 526
A + +
Sbjct: 259 AAKQLVRAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 8e-19
Identities = 52/290 (17%), Positives = 92/290 (31%), Gaps = 53/290 (18%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
+L + A + +A+ A D+ AA L S
Sbjct: 59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ + + A + + + + N+Y+E LL+ AL +
Sbjct: 119 QPQYEQLGSVNLQADVDIDDLN--------VQSEDFFFAAPNEYRECRTLLHAALEMN-- 168
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
N A + +L VLY Y A +RA+E+R PD A+ N L
Sbjct: 169 ---PNDAQL---HASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGA 214
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
N ++ +E Y RAL+I + + N+A Y +Y A +
Sbjct: 215 TLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 446 LT---RAHEREFGACDGDNKPIWQDRQK-----NKAKNREKYYQRALEIY 487
+ A + +W + N+ E Y + +E +
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 25/206 (12%), Positives = 47/206 (22%), Gaps = 29/206 (14%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388
N + K EA + + P+ + +L L
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQA 66
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448
K A + D LA + + A + L
Sbjct: 67 ENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118
Query: 449 ------AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAK 500
A + Q + Y+ + L++ P+D A+
Sbjct: 119 QPQYEQLGSVNLQADVDIDDLNVQSE--DFFFAAPNEYRECRTLLHAALEMNPND---AQ 173
Query: 501 TKNNLASCYLKQGKYKEAEILYKQVL 526
+L Y Y A ++ +
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAV 199
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 39/251 (15%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE----DLEKTSGKYEAAETLEDCALRSRK 267
P + L + + ++ A+ + L + S +A ++D ++S
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145
Query: 268 ESYDIVKQ--------AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDA 319
+ + ++ +P+ A + L ++Y N Y AA L A
Sbjct: 146 FFFAAPNEYRECRTLLHAALEM-------NPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198
Query: 320 LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379
+ +R A N L + +EA RAL+I P +
Sbjct: 199 VELRPD--------DAQLWNKLGATLANGNRPQEALDAYNRALDIN--------PGYVRV 242
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEI---YELKLGPDDSNVAKT-KNNLASCYLKQGKY 435
+ N+A+ N S+Y+ + RA+ + G ++ + +
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302
Query: 436 KEAEILYKQVL 446
E+ Y Q +
Sbjct: 303 DLVELTYAQNV 313
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 91.0 bits (225), Expect = 2e-19
Identities = 51/245 (20%), Positives = 86/245 (35%), Gaps = 37/245 (15%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P A LN LA + R+Q +EA L AL + + AA +NLA + ++G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------FAAAHSNLASVLQQQG 57
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
K +EA K A+ I P A +N+ + + + Y RA++I
Sbjct: 58 KLQEALMHYKEAIRIS--------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--- 106
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ A +NLAS + G EA Y+ L + C N +
Sbjct: 107 -----NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC---NL-AHCLQI 157
Query: 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529
+ ++ ++ + I D KN L S + +++ +
Sbjct: 158 VCDWTDYDERMKKLVSI-----VAD----QLEKNRLPSVHPHHSMLYPLSHGFRKAIAER 208
Query: 530 HEREF 534
H
Sbjct: 209 HGNLC 213
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 5e-16
Identities = 50/323 (15%), Positives = 92/323 (28%), Gaps = 75/323 (23%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277
L+NL QG E AV L ++ALE
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEV--------------------------------- 38
Query: 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAAT 337
P+ A + LA V + Q K +EA +A+ I A
Sbjct: 39 -----------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--------ADA 79
Query: 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVE 397
+N+ + + A RA++I P A +NLA + ++ E
Sbjct: 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAI 131
Query: 398 RYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457
Y+ AL++ + NLA C + + + K++++ ++
Sbjct: 132 ASYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 458 DGDNKPIW-------QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510
P +K A+ + + ++ + L Y+
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 511 KQGKYKEAEILYKQVLTRAHERE 533
Q + H +
Sbjct: 244 SSDFGNHPTSHLMQSIPGMHNPD 266
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 5e-10
Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 69/243 (28%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
P NL QG+ + A+ K+A+
Sbjct: 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---------------------------- 71
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
P A + + ++ + A A+ I
Sbjct: 72 ----------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-------- 107
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
A A +NLA ++ G EA + AL+++ PD NLA Q
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--------PDFPDAYCNLAHCLQIVC 159
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+ + + ++ + I D KN L S + +++ + H
Sbjct: 160 DWTDYDERMKKLVSI-----VAD----QLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHG 210
Query: 452 REF 454
Sbjct: 211 NLC 213
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 3e-19
Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 29/200 (14%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L G+ +A A++ PD A + K +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSK 54
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL------TR 448
+ + + + + LKQGK EAE +K+VL
Sbjct: 55 AALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106
Query: 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLA 506
E E D + + + + Y A+ + L++ D A+ + A
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGAD--YTAAITFLDKILEVCVWD---AELRELRA 161
Query: 507 SCYLKQGKYKEAEILYKQVL 526
C++K+G+ ++A K
Sbjct: 162 ECFIKEGEPRKAISDLKAAS 181
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 50/331 (15%), Positives = 98/331 (29%), Gaps = 57/331 (17%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALE---DLEKT----------SGKYEAAETLEDCAL 263
+ + + G+ + A+P + + D GK + AE L
Sbjct: 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
+S + K A+ D L AL D Y A L+ L +
Sbjct: 99 KSNPSEQE----EKEAE----SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383
A A + K G+ ++A K A +++ D + +
Sbjct: 151 --------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------SDNTEAFYKI 194
Query: 384 ALLCQNQSKYEEVERYYQRALEI----YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
+ L +E + L++ A ++ G+Y +A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAK--NREKYYQRALEIYE--LKLGPDD 495
Y+ V+ + ++ ++++ A+ I L++ PD+
Sbjct: 255 SKYESVMKT---------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ A YL + Y EA Y+
Sbjct: 306 ---VNALKDRAEAYLIEEMYDEAIQDYEAAQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 8e-19
Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 61/282 (21%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD A V+ K K A L + ++ A L K+G
Sbjct: 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--------FTAARLQRGHLLLKQG 85
Query: 350 KYKEAEPLCKRALEIR------EKVLGK-EHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
K EAE K+ L+ ++ + D ++L + AL + + Y + +
Sbjct: 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL------TRAH------ 450
LE+ A+ + A C++K+G+ ++A K T A
Sbjct: 146 ILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197
Query: 451 EREFG-------------ACDGDNKPIWQDRQKNKAKNREKY----------YQRALEIY 487
+ G D D+K + ++ K N+ Y A Y
Sbjct: 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257
Query: 488 E--LKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVL 526
E +K P + ++K + C+ K K EA + +VL
Sbjct: 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 30/240 (12%), Positives = 73/240 (30%), Gaps = 39/240 (16%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355
L + +A + + A+ A ++ GK K A
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDN--------YIAYYRRATVFLAMGKSKAAL 57
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI-------YE 408
P + + ++ D L Q K +E E +++ L+ E
Sbjct: 58 PDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
+ ++ + + A Y A ++L + + + R
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL---------EVCVWDAELRELR 160
Query: 469 QKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ +E ++A+ + KL D+ + +++ Y + G ++ + ++ L
Sbjct: 161 --AECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECL 215
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 44/239 (18%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
+ +G A+ K A + L G +E + +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
L+ ++ K + L L A +Y +A +
Sbjct: 211 VRECLKLDQDHKRCFAHYKQVKKLNK-----------LIESAEELIRDGRYTDATSKYES 259
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
+ + + + K K EA +C L++ PD
Sbjct: 260 VMKTE----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--------PDNVN 307
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
L + A + Y+E + Y+ A E + N + + L + ++
Sbjct: 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGLEKAQRLLKQSQK 358
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 47/299 (15%)
Query: 193 LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGK 251
L P Q ++ + ++ L + + Y A+ + LE + +
Sbjct: 98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157
Query: 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKE 311
AE +++ +K A +++ D ++ +Y ++
Sbjct: 158 ELRAECFI--KEGEPRKAISDLKAA--SKL-------KSDNTEAFYKISTLYYQLGDHEL 206
Query: 312 AANLLNDALTI----REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ + + + L + + L A + G+Y +A + ++
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 263
Query: 368 VLGKEHPDVA----KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
P VA + + K E R L++ + +
Sbjct: 264 -----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALK 310
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQR 482
+ A YL + Y EA Y+ + +++ I + + KA+ K Q+
Sbjct: 311 DRAEAYLIEEMYDEAIQDYEAAQ---------EHNENDQQIREGLE--KAQRLLKQSQK 358
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 1e-18
Identities = 39/248 (15%), Positives = 56/248 (22%), Gaps = 58/248 (23%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L + +Y A L AL L LA K G A
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENP-----QDPEA---LYWLARTQLKLGLVNPALENG 62
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLA-----------LLCQNQSKYEEVERYYQRALEIY 407
K + P L+ + + E+ + A +
Sbjct: 63 KTLVART--------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV- 113
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
+ A Y G+ +AE KQ L D I
Sbjct: 114 -------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----------DTPEIRSA 156
Query: 468 R-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522
+ Y +ALE + AS L +GK +EA
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARAA 208
Query: 523 KQVLTRAH 530
H
Sbjct: 209 ALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-15
Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 50/204 (24%)
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398
L V G+Y A L +RAL+ P + L LA
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKEN--------PQDPEALYWLARTQLKLGLVNPALE 60
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-----------QGKYKEAEILYKQVLT 447
+ + L+ Y+ +G ++A + K
Sbjct: 61 NGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE- 111
Query: 448 RAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502
+ P+ R + E ++AL + +D+ + +
Sbjct: 112 --------RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-------EDT--PEIR 154
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
+ LA YL G+ EA Y + L
Sbjct: 155 SALAELYLSMGRLDEALAQYAKAL 178
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 2e-15
Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 72/255 (28%)
Query: 220 NLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRSR 266
L +Q + GRY+ A+ L ++AL+ + G A
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPAL---------- 59
Query: 267 KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY-----------RDQNKYKEAANL 315
E+ + P +L+ Y R + ++A ++
Sbjct: 60 -ENGK-----TLVAR-------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106
Query: 316 LNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375
L DA + +A + ++Y G+ +AE K+AL + D
Sbjct: 107 LKDAERVNP-----RYAPL---HLQRGLVYALLGERDKAEASLKQALALE---------D 149
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
+ + LA L + + +E Y +ALE + AS L +GK
Sbjct: 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201
Query: 436 KEAEILYKQVLTRAH 450
+EA H
Sbjct: 202 EEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 4e-12
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 31/164 (18%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
+ L + +Y+ ++RAL+ P D + LA LK G
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQD---PEALYWLARTQLKLG 53
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIW---------QDRQKNKAKNREKYYQRAL 484
A K ++ A + RQ + + Y ++AL
Sbjct: 54 LVNPALENGKTLV---------ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 485 EIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + ++ P A Y G+ +AE KQ L
Sbjct: 105 SVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQAL 145
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-11
Identities = 35/220 (15%), Positives = 52/220 (23%), Gaps = 71/220 (32%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE------------------------DLEKTSGKYEA 254
+ L G A+ K + D E+ G E
Sbjct: 43 YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
Query: 255 AETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAAN 314
A ++ +P A + LVY + +A
Sbjct: 103 AL-----------SVLK-----DAERV-------NPRYAPLHLQRGLVYALLGERDKAEA 139
Query: 315 LLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374
L AL + + + LA LY G+ EA +ALE P
Sbjct: 140 SLKQALALEDT---------PEIRSALAELYLSMGRLDEALAQYAKALEQA--------P 182
Query: 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414
A + K EE A L+
Sbjct: 183 KDLDLRVRYASALLLKGKAEE-------AARAAALEHHHH 215
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-18
Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 42/239 (17%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+A + ++ EA N A + + + LNN A ++G
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-----DITY----LNNRAAAEYEKG 52
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+Y+ A A+E ++ ++ ++ +E Y
Sbjct: 53 EYETAISTLNDAVEQG--------REMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-- 102
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
T++ A K ++ + + + R
Sbjct: 103 ---QKSL----TEHRTADILTKLRNAEKELKKAEAEA---------YVNPEKAEEA--RL 144
Query: 470 KNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K + + A++ Y +K P+D A+ +N A+ K + EA + +
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAI 200
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 1e-17
Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 42/240 (17%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
H D+ + N A ++ +Y+ A + LNDA+ + + A ++ + +
Sbjct: 35 HKDITYLNN-RAAAEYEKGEYETAISTLNDAVEQGRE--------MRADYKVISKSFARI 85
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
G K+ +E +K + + A + E+ + + +
Sbjct: 86 GNAYHKLGDLKKTIEYYQK---------SLTEHRTADILTKLRNAEKELKKAEAEAYV-- 134
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
+ A+ Y + + A Y +++ R ++ + +R
Sbjct: 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---------APEDARGYSNR 179
Query: 469 QKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A + + A+ ++ P+ + A+ + +Y A
Sbjct: 180 --AAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 6e-14
Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 34/196 (17%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A + K ++ EA +A E+ H D+ LNN A + +YE
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------HKDIT-YLNNRAAAEYEKGEYE 55
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
A+E + ++ + + G K+ +
Sbjct: 56 TAISTLNDAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEY------ 101
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQ 512
K + + R + + + ++ L+ E + P+ + A Y +
Sbjct: 102 -----YQKSLTEHRTAD-ILTKLRNAEKELKKAEAEAYVNPEKAEEA---RLEGKEYFTK 152
Query: 513 GKYKEAEILYKQVLTR 528
+ A Y +++ R
Sbjct: 153 SDWPNAVKAYTEMIKR 168
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 26/242 (10%), Positives = 50/242 (20%), Gaps = 61/242 (25%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
L+N +G YE A+ A+E G
Sbjct: 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL-------- 92
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ T A + ++ +
Sbjct: 93 ---GDLKKTIEYY------------QKSLTEHR-TADILTKLRNAEKELKKAEAEAYVNP 136
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ A Y + + A ++ P+ A+ +N A
Sbjct: 137 E--------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRA 180
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ E +A+E D N + A+ + +Y A
Sbjct: 181 AALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDA 232
Query: 445 VL 446
Sbjct: 233 AR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 23/220 (10%), Positives = 44/220 (20%), Gaps = 68/220 (30%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
T H E + +
Sbjct: 107 TEHRTADILTKLRNAEKELKKAEAEAY--------------------------------- 133
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
+P+ A + Y ++ + A + + + A
Sbjct: 134 -----------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--------AR 174
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEV 396
+N A K + EA C +A+E P+ + A +Y
Sbjct: 175 GYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKEYASA 226
Query: 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
A D+ V + L +
Sbjct: 227 LETLDAARTK--------DAEVNNGSSAREIDQLYYKASQ 258
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 48/330 (14%), Positives = 90/330 (27%), Gaps = 79/330 (23%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
L A + +A+ ++ LE + A + LR
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+V A+ G + ++L + + E L A+ +
Sbjct: 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--------SDSLFLEVKELFLAAVRLDPT 213
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
+ L VL+ G+Y +A AL +R P+ N L
Sbjct: 214 S------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGA 259
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
N ++ EE Y+RALE+ +++ NL + G ++EA + +
Sbjct: 260 TLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEA 311
Query: 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505
L + K+R + + + L
Sbjct: 312 L-----------------------NMQRKSRGPRGEGGAMSENI------------WSTL 336
Query: 506 ASCYLKQGKYKEAEILYKQVLTRAHEREFG 535
G+ + L+ FG
Sbjct: 337 RLALSMLGQSDAYGAADARDLS-TLLTMFG 365
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 45/250 (18%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P L + + A + L L ++ L LAV +
Sbjct: 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD--------NQTALMALAVSFTNES 146
Query: 350 KYKEAEPLCKRALEIREK--------VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ 401
++A + + L G + L L + S + EV+ +
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFL 205
Query: 402 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN 461
A+ + P + + L + G+Y +A + L + ++
Sbjct: 206 AAVRLD-----PTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAAL---------SVRPND 250
Query: 462 KPIWQDR---QKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 516
+W N ++ E Y+RALE+ +++ NL + G ++
Sbjct: 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHR 302
Query: 517 EAEILYKQVL 526
EA + + L
Sbjct: 303 EAVEHFLEAL 312
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 43/264 (16%), Positives = 83/264 (31%), Gaps = 50/264 (18%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA----------- 336
D+ D+ + + ++N ++ + L + G+ AV
Sbjct: 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQDPKH 97
Query: 337 --TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L + + A +R LE++ PD L LA+ N+S
Sbjct: 98 MEAWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQR 149
Query: 395 EVERYYQRALEI--------YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ + L + G + + +K L S L + E + L+ +
Sbjct: 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAV 208
Query: 447 TRAHEREFGACDGDNKPIWQDRQKNK--AKNREKYYQRALEIYE--LKLGPDDSNVAKTK 502
D + I D Q N Y +A++ + L + P+D
Sbjct: 209 ---------RLDPTS--IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLW 254
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
N L + + +EA Y++ L
Sbjct: 255 NKLGATLANGNQSEEAVAAYRRAL 278
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 37/253 (14%), Positives = 75/253 (29%), Gaps = 37/253 (14%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE----------DLEKTSGKYEAAETLEDCALRSRK 267
L L + + ++ A + + L E+ +G +
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194
Query: 268 ESYDIVKQA--KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ VK+ ++ D + L +++ +Y +A + AL++R
Sbjct: 195 SLFLEVKELFLAAVRL----DPTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
N L + +EA +RALE++ P + NL +
Sbjct: 250 --------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGI 293
Query: 386 LCQNQSKYEEVERYYQRALEI---YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
C N + E ++ AL + G + + L G+
Sbjct: 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353
Query: 443 KQVLTRAHEREFG 455
+ L+ FG
Sbjct: 354 ARDLS-TLLTMFG 365
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 80.5 bits (200), Expect = 3e-18
Identities = 46/150 (30%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
L Y Q Y EA AL + ++ A NL Y K+G Y EA
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRS--------AEAWYNLGNAYYKQGDYDEAIE 56
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416
++ALE+ P A+ NL Q Y+E YYQ+ALE+ D
Sbjct: 57 YYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 100
Query: 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
A+ NL + Y KQG Y EA Y++ L
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 77.8 bits (193), Expect = 2e-17
Identities = 55/192 (28%), Positives = 72/192 (37%), Gaps = 62/192 (32%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A NL Y K+G Y EA ++ALE+ P A+ NL Q Y+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYD 52
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
E YYQ+ALE+ D A+ NL + Y KQG Y EA
Sbjct: 53 EAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEA---------------- 88
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
+YYQ+ALE+ D A+ NL + Y KQG
Sbjct: 89 ----------------------IEYYQKALEL--------DPRSAEAWYNLGNAYYKQGD 118
Query: 515 YKEAEILYKQVL 526
Y EA Y++ L
Sbjct: 119 YDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 62.4 bits (153), Expect = 5e-12
Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P A L Y Q Y EA AL + ++ A NL Y K+
Sbjct: 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--------AEAWYNLGNAYYKQ 82
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
G Y EA ++ALE+ P A+ NL Q Y+E YYQ+ALE+
Sbjct: 83 GDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 2e-17
Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 44/247 (17%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P A L + + + A L L ++ N+ L LAV Y
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-----PNNLKA---LMALAVSYTNTS 147
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE- 408
++A K ++ +P + N + + + E
Sbjct: 148 HQQDACEALKNWIKQ--------NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
Query: 409 ----LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPI 464
D + + L + G++ A + L ++ +
Sbjct: 200 YLEAAHQNGDMID-PDLQTGLGVLFHLSGEFNRAIDAFNAAL---------TVRPEDYSL 249
Query: 465 WQDR---QKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
W N ++ E + Y RALEI +++ NL + G Y+EA
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAV 301
Query: 520 ILYKQVL 526
+ L
Sbjct: 302 SNFLTAL 308
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 37/295 (12%), Positives = 85/295 (28%), Gaps = 39/295 (13%)
Query: 249 SGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNK 308
+ ++E A+ + + ++ + V + + +N
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 309 YKEAANLLNDALTIREKTLGENHAAVAA-------------TLNNLAVLYGKRGKYKEAE 355
+K+ + L + G+ + L + + + A
Sbjct: 62 FKDWPGAFEEGLKRLK--EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAI 119
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415
+R LE++ P+ K L LA+ N S ++ + ++ +
Sbjct: 120 VALQRCLELQ--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--------N 163
Query: 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK--A 473
N + ++ + L E A + I D Q
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222
Query: 474 KNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + RA++ + L + P+D N L + + +EA Y + L
Sbjct: 223 FHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRAL 274
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-16
Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 57/283 (20%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
L I A + A+ ++ LE +L+ + + A ++
Sbjct: 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ +VK K + + ++ D + + L +A
Sbjct: 163 NPKYKYLVKNKKGSP-------------GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
L VL+ G++ A AL +R P+ N L
Sbjct: 210 ------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGA 255
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
N + EE Y RALEI +++ NL + G Y+EA +
Sbjct: 256 TLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTA 307
Query: 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488
L + ++ Q + N + AL + +
Sbjct: 308 L---------SLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 39/245 (15%), Positives = 70/245 (28%), Gaps = 40/245 (16%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
L L + Y + + A K ++ + + +
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
KE Y + A G D D + L +++ ++ A + N ALT+R
Sbjct: 196 V-KELYL-----EAAHQNG----DMID-PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP 244
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ + N L + +EA RALEI+ P + NL
Sbjct: 245 E--------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLG 288
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ C N Y E + AL + N+ + + L++
Sbjct: 289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348
Query: 445 VLTRA 449
Sbjct: 349 ANLGD 353
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 2e-17
Identities = 27/202 (13%), Positives = 62/202 (30%), Gaps = 31/202 (15%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIRE--------KVLGKEHPDVAKQLNNLALL 386
+ + G+ +A ++ + + + K +K LAL
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ Y++ +Y+ L+ N A + +G+ K+A +Y+++L
Sbjct: 64 YKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
Query: 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNN 504
+ DN N + ++ LE L +
Sbjct: 116 QL---------EADNLAANIFL-GNYYYLTAEQEKKKLETDYKKLSSPTKM---QYARYR 162
Query: 505 LASCYLKQGKYKEAEILYKQVL 526
L +Y++A ++V+
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 7e-15
Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 53/231 (22%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
+ V G+ AV +Q + + E
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA------LNIDRTE-------------------- 39
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
+ + + + LAL Y+ Y +A + L
Sbjct: 40 --MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN--------VD 89
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEE 395
L A + RG+ K+A + ++ L++ D L + + ++
Sbjct: 90 CLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEKK 141
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ L + + + L +Y++A ++V+
Sbjct: 142 KLETDYKKLSS--------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 9e-09
Identities = 24/235 (10%), Positives = 50/235 (21%), Gaps = 70/235 (29%)
Query: 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL 263
N + L + Y Y+ A K+ L+
Sbjct: 43 WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-------------------- 82
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
P+ L A + + + K+A + L +
Sbjct: 83 ------------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
A L Y + K+ + L +
Sbjct: 119 ADN--------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYARYR 162
Query: 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
L ++YE+ Q+ + + P + + L + +
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVILRF-----PST----EAQKTLDKILRIEKEVNR 208
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 44/236 (18%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
+ + +N Y ++ + D L G+ +A
Sbjct: 7 HSSGVDLGTENLYFQS---MADV----------------EKHLELGKKLLAAGQLADALS 47
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416
A++ PD A + K + + +++
Sbjct: 48 QFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KM 91
Query: 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVL----TRAHEREFGACDGDNKPIWQDRQKNK 472
+ + LKQGK EAE +K+VL + E+E + + + + R +
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 473 AKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
Y A+ + L++ D A+ + A C++K+G+ ++A K
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWD---AELRELRAECFIKEGEPRKAISDLKAAS 204
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 7e-17
Identities = 55/282 (19%), Positives = 91/282 (32%), Gaps = 61/282 (21%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD A V+ K K A L + ++ AA L K+G
Sbjct: 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----FTAA----RLQRGHLLLKQG 108
Query: 350 KYKEAEPLCKRALEI-------REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
K EAE K+ L+ +E D ++L + AL Y + +
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT--------------- 447
LE+ A+ + A C++K+G+ ++A K
Sbjct: 169 ILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 448 ----------RAHEREFGACDGDNKPIWQDRQKNKAKNREKY----------YQRALEIY 487
+ RE D D+K + ++ K N+ Y A Y
Sbjct: 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280
Query: 488 E--LKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVL 526
E +K P + ++K + C+ K K EA + +VL
Sbjct: 281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 9e-17
Identities = 47/336 (13%), Positives = 97/336 (28%), Gaps = 67/336 (19%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALE---DLEKT----------SGKYEAAETLEDCAL 263
+ + + G+ + A+P + ++ D GK + AE L
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
+S + + D L AL Y A L+ L +
Sbjct: 122 KSNPSENEEKEAQSQLI--------KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383
A A + K G+ ++A K A +++ D + +
Sbjct: 174 VWD--------AELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKI 217
Query: 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK---------TKNNLASCYLKQGK 434
+ L +E + L++ D A ++ G+
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272
Query: 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAK--NREKYYQRALEIYE--LK 490
Y +A Y+ V+ + ++ ++++ A+ + L+
Sbjct: 273 YTDATSKYESVM---------KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ PD+ + A YL + Y EA Y+
Sbjct: 324 MEPDN---VNALKDRAEAYLIEEMYDEAIQDYETAQ 356
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 42/324 (12%), Positives = 85/324 (26%), Gaps = 73/324 (22%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
+ +G A+ K A + L G +E + +
Sbjct: 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
L+ ++ K + L L A +Y +A +
Sbjct: 234 VRECLKLDQDHKRCFAHYKQVKKLNK-----------LIESAEELIRDGRYTDATSKYES 282
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
+ + + + K K EA +C L++ PD
Sbjct: 283 VMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVN 330
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
L + A + Y+E + Y+ A E + N + + L + ++
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKR 382
Query: 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498
+ + R K + + Y + AL+ + PD+
Sbjct: 383 DYYKILGV--------------------KRNAKKQEIIKAYRKLALQWH-----PDN--- 414
Query: 499 AKTKNNLASCYLKQGKYKEA-EIL 521
+ + K A E+L
Sbjct: 415 FQNEEEKKKAEKKFIDIAAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 22/133 (16%)
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458
++ +++ L + L L G+ +A + + D
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAV---------DGD 56
Query: 459 GDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513
DN + R K+K + +++ + + LKQG
Sbjct: 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDFTAARLQRGHLLLKQG 108
Query: 514 KYKEAEILYKQVL 526
K EAE +K+VL
Sbjct: 109 KLDEAEDDFKKVL 121
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 26/341 (7%), Positives = 67/341 (19%), Gaps = 64/341 (18%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ + +
Sbjct: 69 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 128
Query: 259 EDCALRSRKESYD-IVKQAKVAQILGSGG----------HDHPDVATMLNILALVYRDQN 307
A E I Q L + P+ + +
Sbjct: 129 LCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE 188
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ +L A + + + + + P+ +A +
Sbjct: 189 TVQRLLPVLCQAHGLTPQQ--------VVAIASNGGGKQALETVQRLLPVLCQAHGLT-- 238
Query: 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427
P + + Q + + +A + P + +
Sbjct: 239 ------PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-----PQQ---VVAIASNSG 284
Query: 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487
+ + Q K + QR L +
Sbjct: 285 GKQALETVQRLLPVLCQAH---------GLTPQQVVAIASN--GGGKQALETVQRLLPVL 333
Query: 488 E--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
L P + + + Q
Sbjct: 334 CQAHGLTPQQ---VVAIASHDGGKQALETVQRLLPVLCQAH 371
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 22/330 (6%), Positives = 63/330 (19%), Gaps = 76/330 (23%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL-- 228
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
+ + P + + + +L
Sbjct: 229 ---------PVLC-----QAHGL-------TPQQVVAIASNGGGKQALETVQRLLPVLCQ 267
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
A + + + + + + P+ +A + P
Sbjct: 268 AHGLTPQQ--------VVAIASNSGGKQALETVQRLLPVLCQAHGLT--------PQQVV 311
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
+ + Q + + +A L P + +
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQAHG-----LTPQQ---VVAIASHDGGKQALETVQRL 363
Query: 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDS 496
+ Q + K + QR L + L P+
Sbjct: 364 LPVLCQAH---------GLTPEQVVAIASNG--GGKQALETVQRLLPVLCQAHGLTPEQ- 411
Query: 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + + Q
Sbjct: 412 --VVAIASHDGGKQALETVQRLLPVLCQAH 439
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 3e-15
Identities = 16/239 (6%), Positives = 42/239 (17%), Gaps = 40/239 (16%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P + + + + +L A + + +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT--------PQQVVAIASNGGGKQALE 324
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+ P+ +A + P + + Q + + +A +
Sbjct: 325 TVQRLLPVLCQAHGLT--------PQQVVAIASHDGGKQALETVQRLLPVLCQAHGL--- 373
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ + + Q +
Sbjct: 374 -----TPEQVVAIASNGGGKQALETVQRLLPVLCQAH---------GLTPEQVVAIASH- 418
Query: 470 KNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K + QR L + L P + L
Sbjct: 419 -DGGKQALETVQRLLPVLCQAHGLTPQQ---VVAIASNGGGRPALESIVAQLSRPDPAL 473
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 8e-14
Identities = 21/232 (9%), Positives = 46/232 (19%), Gaps = 35/232 (15%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
+L + R EA + +ALT L + + + P
Sbjct: 37 QLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVV---AIASHDGGKQALETVQRLLP 93
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416
+ +A + P + + Q + + +A +
Sbjct: 94 VLCQAHGLT--------PQQVVAIASHDGGKQALETVQRLLPVLCQAHGL--------TP 137
Query: 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNR 476
+ + + Q + K
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGL---------TPEQVVAIASNG--GGKQA 186
Query: 477 EKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ QR L + L P + + + Q
Sbjct: 187 LETVQRLLPVLCQAHGLTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAH 235
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 13/248 (5%), Positives = 44/248 (17%), Gaps = 60/248 (24%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL-- 330
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
P + + + +L
Sbjct: 331 ---------PVLCQAHGLT------------PQQVVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
A + + + + + P+ +A + P+
Sbjct: 370 AHGLTPEQ--------VVAIASNGGGKQALETVQRLLPVLCQAHGLT--------PEQVV 413
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
+ + Q + + +A + +
Sbjct: 414 AIASHDGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIASNGGGRPALESIVAQ 465
Query: 439 EILYKQVL 446
L
Sbjct: 466 LSRPDPAL 473
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-07
Identities = 15/221 (6%), Positives = 43/221 (19%), Gaps = 57/221 (25%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ +
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL-- 364
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
+ + P+ + + + +L
Sbjct: 365 ---------PVLC-----QAHGL-------TPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
A + + + + P+ +A + P
Sbjct: 404 AHGLT--------PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--------PQQVV 447
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA 419
+ + AL +D VA
Sbjct: 448 AIASNGGGRPALESIVAQLSRPDPALAAL-----TNDHLVA 483
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 21/186 (11%), Positives = 39/186 (20%), Gaps = 25/186 (13%)
Query: 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
+ + + E L A E+R P L + + E ++ A
Sbjct: 6 HHHQWSGARALEALLTVAGELRGP------PLQLDTGQLLKIAKRGGVTAVEAVHAWRNA 59
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463
L L L P+ + + + Q
Sbjct: 60 LTGAPLNLTPEQ---VVAIASHDGGKQALETVQRLLPVLCQAH---------GLTPQQVV 107
Query: 464 IWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
K + QR L + L P+ + + +
Sbjct: 108 AIASHDG--GKQALETVQRLLPVLCQAHGLTPEQ---VVAIASHDGGKQALETVQALLPV 162
Query: 522 YKQVLT 527
Q
Sbjct: 163 LCQAHG 168
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 8e-16
Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 10/211 (4%)
Query: 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN 340
GS + + A + A +YR + + A + A ++K E+ A T
Sbjct: 25 FSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA--GNTYVE 82
Query: 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-YEEVERY 399
+ G A + A++I + A L + +N Y +
Sbjct: 83 AYKCFKSGGNSVNAVDSLENAIQIFTH--RGQFRRGANFKFELGEILENDLHDYAKAIDC 140
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA---HEREFGA 456
Y+ A E Y + K A G+Y EA +Y +++ + ++
Sbjct: 141 YELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198
Query: 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487
D K A + Q
Sbjct: 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED 229
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 4e-12
Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 24/221 (10%)
Query: 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGG 286
++E A LC QA A ++ A D K+A
Sbjct: 29 DSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAA--------DYQKKAG--------- 71
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLA-VLY 345
+ + ++ A + L +A+ I T A L +L
Sbjct: 72 -NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFKFELGEILE 128
Query: 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405
Y +A + A E + + K A L +Y E Y + ++
Sbjct: 129 NDLHDYAKAIDCYELAGEWYAQ--DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ ++ C L A ++
Sbjct: 187 SS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 4e-11
Identities = 25/203 (12%), Positives = 48/203 (23%), Gaps = 45/203 (22%)
Query: 328 GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387
A A +Y R + A +A + ++K +
Sbjct: 30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCF 87
Query: 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYKEAEILYKQVL 446
++ + A++I+ + A K L Y +A
Sbjct: 88 KSGGNSVNAVDSLENAIQIFTHRGQFR--RGANFKFELGEILENDLHDYAKAI------- 138
Query: 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLA 506
Y+ A E Y + K A
Sbjct: 139 -------------------------------DCYELAGEWYAQD--QSVALSNKCFIKCA 165
Query: 507 SCYLKQGKYKEAEILYKQVLTRA 529
G+Y EA +Y +++ +
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSS 188
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 9e-09
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 6/186 (3%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYDIVKQAKVAQIL 282
Y + +A +A + +K + EA T + +S S + V + A +
Sbjct: 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106
Query: 283 GSGGHDHPDVATMLNILALVYR-DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL 341
+ A L + D + Y +A + A + ++ A
Sbjct: 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKC 164
Query: 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ 401
A L G+Y EA + + ++ + L + R Q
Sbjct: 165 ADLKALDGQYIEASDIYSKLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223
Query: 402 RALEIY 407
Sbjct: 224 EGQSED 229
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 69.3 bits (171), Expect = 1e-14
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 24/146 (16%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
D + A L Y Q Y EA AL + A NL Y K
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--------AEAWYNLGNAYYK 55
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
+G Y EA ++ALE+ P+ A+ NL Q Y+E YYQ+ALE+
Sbjct: 56 QGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL- 106
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQG 433
D N A+ K NL + KQG
Sbjct: 107 -------DPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 2e-14
Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A NL Y K+G Y EA ++ALE+ P+ A+ NL Q Y+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYD 60
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
E YYQ+ALE+ D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 61 EAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 5e-10
Identities = 44/153 (28%), Positives = 58/153 (37%), Gaps = 54/153 (35%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
+ A+ NL Q Y+E YYQ+ALE+ D N A+ NL + Y KQG
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQG 57
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP 493
Y EA +YYQ+ALE+
Sbjct: 58 DYDEAI--------------------------------------EYYQKALEL------- 72
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 2e-04
Identities = 38/171 (22%), Positives = 51/171 (29%), Gaps = 60/171 (35%)
Query: 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279
NL Y QG Y+ A+ ++ALE +
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALE----------------------------L------- 38
Query: 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLN 339
P+ A L Y Q Y EA AL + A
Sbjct: 39 ---------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--------AEAWY 81
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
NL Y K+G Y EA ++ALE+ P+ A+ NL Q Q
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQ 124
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 9e-14
Identities = 30/204 (14%), Positives = 55/204 (26%), Gaps = 49/204 (24%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A +L N VL + +K A ++ N+ +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQ-----------DPHSRICFNIGCMYTILKNMT 54
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
E E+ + R++ D ++A Y + KY A K+ L
Sbjct: 55 EAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL-------- 98
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
+ + Y L+ + N+A Y K+ +
Sbjct: 99 --------------IQLRGNQLIDYKILGLQFKL--------FACEVLYNIAFMYAKKEE 136
Query: 515 YKEAEILYKQVLTRAHEREFGACD 538
+K+AE + E D
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 27/171 (15%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355
L ++ D+ +K A + + + H+ + N+ +Y EAE
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRI---CFNIGCMYTILKNMTEAE 57
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI--------Y 407
R++ +A +L KY+ + + AL Y
Sbjct: 58 KAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458
++ + N+A Y K+ ++K+AE + E D
Sbjct: 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 23/159 (14%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ + + +Y EA ++ + H AVA +LY +
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHLAVA--YFQRGMLYYQTE 85
Query: 350 KYKEAEPLCKRALEIRE-------KVLGKEH-PDVAKQLNNLALLCQNQSKYEEVERYYQ 401
KY A K AL K+LG + + L N+A + + ++++ E
Sbjct: 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145
Query: 402 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440
A + + + +K + C KQ Y+ I
Sbjct: 146 LATSMK-----SEPRH-SKIDKAME-CVWKQKLYEPVVI 177
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 35/146 (23%)
Query: 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405
G G +A P ++A+ G + D+A+ L + +Y + E ++
Sbjct: 1 GVLGLEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465
+ P+ + A G+Y++ L +++ A D++ I
Sbjct: 56 QF-----PNH---QALRVFYAMVLYNLGRYEQGVELLLKII---------AETSDDETI- 97
Query: 466 QDRQKNKAKNREKYYQRALEIYELKL 491
+ Y++A+ Y KL
Sbjct: 98 ------------QSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-09
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 32/144 (22%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+A A+ G +A L + G+Y++AE + ++
Sbjct: 3 LGLEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ- 56
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
P+ A++ N +YE+ + + DD +
Sbjct: 57 -------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE-----TSDDETIQ------ 98
Query: 426 ASCYLKQGKYKEAEILYKQVLTRA 449
YK+A + Y L
Sbjct: 99 --------SYKQAILFYADKLDET 114
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 9e-08
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 51/142 (35%)
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+ YY++A+ G ++A+ L S + G+Y++A
Sbjct: 5 LEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKA------------- 46
Query: 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511
E ++ + P+ + A
Sbjct: 47 -------------------------EAVLANGVKQF-----PNH---QALRVFYAMVLYN 73
Query: 512 QGKYKEAEILYKQVLTRAHERE 533
G+Y++ L +++ + E
Sbjct: 74 LGRYEQGVELLLKIIAETSDDE 95
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 34/128 (26%)
Query: 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAV 343
+ G D+A L +R +Y++A +L + + A A+
Sbjct: 18 ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAM 69
Query: 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
+ G+Y++ L + + + + Y++A
Sbjct: 70 VLYNLGRYEQGVELLLKIIAETS-----DDETIQ---------------------SYKQA 103
Query: 404 LEIYELKL 411
+ Y KL
Sbjct: 104 ILFYADKL 111
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 2e-13
Identities = 30/324 (9%), Positives = 70/324 (21%), Gaps = 65/324 (20%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALED-------LEKTSGKYEAAETLEDCALR 264
PA++ + + + + +P+ QA + G +A ET++ L
Sbjct: 189 PAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR-LL- 246
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ + PD + + + +L A +
Sbjct: 247 ---PVLC-----QAHGL-------PPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT- 290
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ + + P+ +A + PD + +
Sbjct: 291 -------PDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT--------PDQVVAIASHD 335
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
Q + + +A + + + + + Q
Sbjct: 336 GGKQALETVQRLLPVLCQAHGL--------TPDQVVAIASNGGGKQALETVQRLLPVLCQ 387
Query: 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTK 502
D +A QR L + L PD
Sbjct: 388 AH---------GLTPDQVVAIASNGGKQALET---VQRLLPVLCQAHGLTPDQ---VVAI 432
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
+ + + Q
Sbjct: 433 ASHDGGKQALETVQRLLPVLCQTH 456
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 18/244 (7%), Positives = 44/244 (18%), Gaps = 40/244 (16%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD + + + +L A + V A + +
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGL-------TPDQVVA-IASNGGGKQALE 579
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+ P+ +A + + + Q + + +A
Sbjct: 580 TVQRLLPVLCQAHGLT--------QVQVVAIASNIGGKQALETVQRLLPVLCQAHG---- 627
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ + + Q D
Sbjct: 628 ----LTPAQVVAIASHDGGKQALETVQRLLPVLCQAH---------GLTPDQVVAIASNG 674
Query: 470 KNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
K + QR L + L + + + + Q
Sbjct: 675 G--GKQALETVQRLLPVLCQAHGLTQEQ---VVAIASNNGGKQALETVQRLLPVLCQAHG 729
Query: 528 RAHE 531
+
Sbjct: 730 LTPD 733
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 4e-09
Identities = 26/317 (8%), Positives = 66/317 (20%), Gaps = 51/317 (16%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
P ++ + + + + +P+ QA T + A +
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAHGL---TPDQVVAIASNGGGKQALETVQRL 381
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
+ + + PD + + + +L A +
Sbjct: 382 LPVLCQAHGL-------TPDQVVAIASNGGK-QALETVQRLLPVLCQAHGL-------TP 426
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
V A + + + P+ + + P + + Q
Sbjct: 427 DQVVA-IASHDGGKQALETVQRLLPVLCQTHGLT--------PAQVVAIASHDGGKQALE 477
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+++ +A + + + + + Q
Sbjct: 478 TVQQLLPVLCQAHGL--------TPDQVVAIASNIGGKQALATVQRLLPVLCQAH----- 524
Query: 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCY 509
D K + QR L + L PD +
Sbjct: 525 ----GLTPDQVVAIASNG--GGKQALETVQRLLPVLCQAHGLTPDQVV---AIASNGGGK 575
Query: 510 LKQGKYKEAEILYKQVL 526
+ + Q
Sbjct: 576 QALETVQRLLPVLCQAH 592
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 5e-09
Identities = 30/324 (9%), Positives = 74/324 (22%), Gaps = 53/324 (16%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGKYEAAETLEDCALRSRKESY 270
P ++ + + + + +P+ QA + + AL + +
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ--ALETVQRLL 619
Query: 271 DIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN 330
++ QA P + + + +L A +
Sbjct: 620 PVLCQAH---------GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL-------T 663
Query: 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
V A + + + P+ +A + + + + Q
Sbjct: 664 PDQVVA-IASNGGGKQALETVQRLLPVLCQAHGLT--------QEQVVAIASNNGGKQAL 714
Query: 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT--- 447
+ + +A + PD + + + Q
Sbjct: 715 ETVQRLLPVLCQAHGLT-----PDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766
Query: 448 -------------RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD 494
+A E + + A ++ALE + +L P
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQ-RLLPV 825
Query: 495 DSNVAKTKNNLASCYLKQGKYKEA 518
+ K+A
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQA 849
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 29/325 (8%), Positives = 64/325 (19%), Gaps = 80/325 (24%)
Query: 202 AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDC 261
A PA++ + + + + +P+ QA
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG------------------ 661
Query: 262 ALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALT 321
PD + + + +L A
Sbjct: 662 --------------------------LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695
Query: 322 IREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLN 381
+ V A + + + P+ +A + PD +
Sbjct: 696 L-------TQEQVVA-IASNNGGKQALETVQRLLPVLCQAHGLT--------PDQVVAIA 739
Query: 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441
+ Q + + +A L P + + +
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHG-----LTPAQ---VVAIASNIGGKQALETVQRLLPV 791
Query: 442 YKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT 501
Q + + K + QR L + G V
Sbjct: 792 LCQDHGLTLAQ-----------VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAI 840
Query: 502 KNNLASCYLKQGKYKEAEILYKQVL 526
+N+ + + Q
Sbjct: 841 ASNIG-GKQALETVQRLLPVLCQDH 864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 4e-13
Identities = 19/125 (15%), Positives = 43/125 (34%)
Query: 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
+ K+++ + ++ + L + + L+ G +EA R +E
Sbjct: 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
HP Q+ + L +Q + + + + A +I + G + S +
Sbjct: 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417
Query: 424 NLASC 428
L C
Sbjct: 418 LLEEC 422
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-08
Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 10/160 (6%)
Query: 236 PLCKQALEDLEKTSGKYEA---AETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD- 291
C+ +D + +G + + + A I+ S PD
Sbjct: 265 FRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI 324
Query: 292 ---VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
+L+ + +EA + +H + + L +
Sbjct: 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQ 384
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388
G + +A + A +I G+EH + + L + LL +
Sbjct: 385 GMFPQAMKNLRLAFDIMRVTHGREHSLI-EDL--ILLLEE 421
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-07
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+++ +C+ + + L + K L+ C N EE Y R +E
Sbjct: 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP 358
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ---VLTRAHEREFGACDGDNKP 463
Y + + L QG + +A + ++ H G
Sbjct: 359 YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH--------GREHS 410
Query: 464 IWQD 467
+ +D
Sbjct: 411 LIED 414
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 9e-13
Identities = 17/139 (12%), Positives = 31/139 (22%), Gaps = 30/139 (21%)
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
+ A+ P D LA L G E+ ++ L
Sbjct: 5 GPRELLQLRAAVRHR-----PQD---FVAWLMLADAELGMGDTTAGEMAVQRGL------ 50
Query: 453 EFGACDGDNKPIW-----QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLAS 507
A + + + Q+A + P+ L
Sbjct: 51 ---ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD-----AAPEH---PGIALWLGH 99
Query: 508 CYLKQGKYKEAEILYKQVL 526
G+ + A Y +
Sbjct: 100 ALEDAGQAEAAAAAYTRAH 118
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 26/198 (13%), Positives = 43/198 (21%), Gaps = 52/198 (26%)
Query: 228 QGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRSRKESYDIVK 274
+ + A+ D E G A E L
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------- 52
Query: 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV 334
HP + L V Q ++ EAA LL A
Sbjct: 53 --------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--------PEH 90
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L G+ + A RA ++ P+ L + +
Sbjct: 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITAQLLNWRRRLCDWR 142
Query: 395 EVERYYQRALEIYELKLG 412
++ + +G
Sbjct: 143 ALDVLSAQVRAAVAQGVG 160
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 44/321 (13%), Positives = 90/321 (28%), Gaps = 57/321 (17%)
Query: 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA-QILGSG 285
+ + + + ++ L Y ++ED ++ D+ ++ + Q +
Sbjct: 39 EEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAG----RKQQDVQEEMEKTLQQMEEV 94
Query: 286 GHDHPDVATMLNILALVYRDQNKY-KEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344
A L + Y EA LL+ A+ + + N L +
Sbjct: 95 LGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------VEAWNQLGEV 146
Query: 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER--YYQR 402
Y K+G A AL + L NL+++ + E +
Sbjct: 147 YWKKGDVTSAHTCFSGALTHC--------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Query: 403 ALEIYE--LKLGPDDSNVAKTKNNLASCYL--------KQGKYKEAEILYKQVLTRAHER 452
++ + +++ D L + YL ++A Y Q
Sbjct: 198 SVRQAKLAVQMDVLDGRSW---YILGNAYLSLYFNTGQNPKISQQALSAYAQAE------ 248
Query: 453 EFGACDGDNKPIWQDRQKNKA---KNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLAS 507
+ N + N+A K E Y ALE + L P + +
Sbjct: 249 KVDRKASSNPDLHL----NRATLHKYEESY-GEALEGFSQAAALDPAW---PEPQQREQQ 300
Query: 508 CYLKQGKYKEAEILYKQVLTR 528
+ + +
Sbjct: 301 LLEFLSRLTSLLESKGKTKPK 321
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 68.4 bits (166), Expect = 2e-12
Identities = 21/140 (15%), Positives = 47/140 (33%)
Query: 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
R + Y E L + L +E + + V L+ + + Y+EA +R ++
Sbjct: 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
K+ + + + L + E +A I + GP +
Sbjct: 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA 439
Query: 424 NLASCYLKQGKYKEAEILYK 443
++ +++ E +Y
Sbjct: 440 MRMQTEMELRMFRQNEFMYH 459
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 3e-08
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 21/191 (10%)
Query: 236 PLCKQALEDLEKTSGKYEAAETLEDC---------------ALRSRKESYDIVKQAKVAQ 280
C++ L+D + K + + E RS +++VK +
Sbjct: 277 EHCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECL 336
Query: 281 ILGSG--GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATL 338
+ V +L+I + V Y+EA++ + K N+A + +
Sbjct: 337 EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN---QSKYEE 395
+ G + + +A I G HP K L + + + + E
Sbjct: 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT-KDLEAMRMQTEMELRMFRQNE 455
Query: 396 VERYYQRALEI 406
+ R +
Sbjct: 456 FMYHKMREAAL 466
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 3e-06
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 38/177 (21%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
G Y E LC+ LE +E V + V + L+ + + YEE Y +R ++
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
Y +++ + G +
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGH--------------------------- 413
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523
+A I + GP + ++ +++ E +Y
Sbjct: 414 -----------GMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 3e-12
Identities = 13/111 (11%), Positives = 34/111 (30%)
Query: 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
+ E + + +++ + + + ++ A ++ ++
Sbjct: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414
K +VA L L E+ ++A+ I E+ G D
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 2e-08
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 8/140 (5%)
Query: 238 CKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD-HPDVATML 296
+ + ++ A+ + E +I + ++ + + S D + + M+
Sbjct: 291 IRDMVRYARNVIEEFRRAKHYKSP-----SELLEICELSQ--EKMSSVFEDSNVYMLHMM 343
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
V ++ A + K VA+ L LY E
Sbjct: 344 YQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEK 403
Query: 357 LCKRALEIREKVLGKEHPDV 376
K+A+ I E GK+HP +
Sbjct: 404 ALKKAIAIMEVAHGKDHPYI 423
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 21/146 (14%), Positives = 38/146 (26%), Gaps = 38/146 (26%)
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
E +C+ + E V + + + +C +E +Y Q+ ++ Y
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
NVA L Y+ E
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGE----------------------------- 402
Query: 469 QKNKAKNREKYYQRALEIYELKLGPD 494
K ++A+ I E+ G D
Sbjct: 403 ---------KALKKAIAIMEVAHGKD 419
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 7e-11
Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388
A +L K+ +++A +A+E+ P NN A +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYF 53
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+ K+ E ++ ++A+E+ + D +AK + + + KQ A + + L+
Sbjct: 54 EEKKFAECVQFCEKAVEVGR-ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-10
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
D A L Q +++A + A+ + + NN A +Y +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEE 55
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+ E C++A+E+ + ++ +AK ++ Q Q+ +++ R+L
Sbjct: 56 KKFAECVQFCEKAVEVGRETR-ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-09
Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 47/157 (29%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
D A +L Q +E+ +Y +A+E+ D + NN A+ Y
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYF 53
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELK 490
++ K+ E ++ ++A+E+ +
Sbjct: 54 EEKKFAECV--------------------------------------QFCEKAVEVGR-E 74
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
D +AK + + + KQ A + + L+
Sbjct: 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 9e-11
Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 10/232 (4%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
+ + ++ Q +YKE N + + L E +A
Sbjct: 69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVL 126
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+ Y+ K+ L + + N +A + ++ +++ L+
Sbjct: 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYI--ENAIANIYAENGYLKKGIDLFEQILKQ 184
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGD---NKP 463
E L ++ K + N A +Y+E+ + + + A G +
Sbjct: 185 LE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243
Query: 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515
+ + + E Y++A +++ + N ++ +
Sbjct: 244 ECLRKLEYEEAEIEDAYKKASFFFDIL--EMHAYKEALVNKISRLEHHHHHH 293
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 8e-10
Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 8/225 (3%)
Query: 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYD 271
R + + VI Q RY+ L+ E + + A + + +
Sbjct: 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEY 133
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
+ + K G D + N +A +Y + K+ +L L E L +N
Sbjct: 134 CILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNE 192
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
N A +Y+E+ +A+EI ++ + + +
Sbjct: 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLE 250
Query: 392 KYEE-VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
E +E Y++A +++ + N ++ +
Sbjct: 251 YEEAEIEDAYKKASFFFDIL--EMHAYKEALVNKISRLEHHHHHH 293
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 7/164 (4%)
Query: 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
+ KQ + ++ Q +Y+E+ L+ E P+ + + +A+ LK+
Sbjct: 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKK 128
Query: 433 GKYKEAEILYKQVLTRAHEREFGACDGD---NKPIWQDRQKNKAKNREKYYQRALEIYEL 489
Y+ + K++L + + K +++ L+ E
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKG-IDLFEQILKQLE- 186
Query: 490 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533
L ++ K + N A +Y+E+ + + +
Sbjct: 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 2e-10
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 14/112 (12%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
VL G Y E+ L ++A+++ P+ +K N +YE
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYE 57
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
E Y + + E D A + + +
Sbjct: 58 EAVDCYNYVINVIE------DEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 3e-06
Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 14/110 (12%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
+ ++ D Y E+ +L A+ + + +Y+EA
Sbjct: 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE----ESKY----WLMKGKALYNLERYEEAVD 61
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+ + E A + E + ++
Sbjct: 62 CYNYVINV------IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-05
Identities = 13/150 (8%), Positives = 31/150 (20%), Gaps = 52/150 (34%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
++ +L + Y E +++A+++ D +K +Y+
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYE 57
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496
EA Y + + E D
Sbjct: 58 EAV--------------------------------------DCYNYVINVIE------DE 73
Query: 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A + + +
Sbjct: 74 YNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-10
Identities = 20/153 (13%), Positives = 55/153 (35%), Gaps = 20/153 (13%)
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHA---AVAATLNNLAVLYGKRGKYKEAEPLCKRA 361
+ + + + + DA+ TL + +A + + + A + +G+ +EAE +
Sbjct: 4 NITENESISTAVIDAIN-SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFL 62
Query: 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421
+ LA + Q + ++++ Y A + N
Sbjct: 63 CIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--------GKNDYTP 106
Query: 422 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
+ C L+ +A+ ++ V+ +++ +
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 24/153 (15%)
Query: 389 NQSKYEEVERYYQRALEIYE-----LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443
N ++ E + A+ + D + + A + +G+ +EAE+ ++
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIY---SYAYDFYNKGRIEEAEVFFR 60
Query: 444 QVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKT 501
+ D N ++ +Q+A ++Y LG +D
Sbjct: 61 FLC---------IYDFYNVDYIM--GLAAIYQIKEQFQQAADLYAVAFALGKND---YTP 106
Query: 502 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534
+ C L+ +A+ ++ V+ +++ +
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 10/119 (8%), Positives = 34/119 (28%), Gaps = 16/119 (13%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
D+ + A + ++ + +EA + LA +Y +
Sbjct: 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKE 84
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
++++A L A + + + + + + ++ ++
Sbjct: 85 QFQQAADLYAVAFAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-10
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L L + GK+ +A+ + + + A+ L Q+ YE
Sbjct: 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYE 69
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+ + Y + D N + + A C+L+ G AE + A
Sbjct: 70 QALQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 14/148 (9%), Positives = 29/148 (19%), Gaps = 21/148 (14%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
D L L K+ +A + + + L G
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----DARY----FLGLGACRQSLG 66
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
Y++A + + + + A + E + A
Sbjct: 67 LYEQALQSYSYGALMD--------INEPRFPFHAAECHLQLGDLDGAESGFYSARA---- 114
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKE 437
L + K+
Sbjct: 115 -LAAAQPAHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-07
Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 54/158 (34%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
D +QL L K+++ ++ +Q + D A+ L +C G
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLG 66
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP 493
Y++A + Y +
Sbjct: 67 LYEQAL--------------------------------------QSYSYGALM------- 81
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
D N + + A C+L+ G AE + A
Sbjct: 82 -DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.1 bits (134), Expect = 7e-10
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398
NL Y K+G Y EA ++ALE+ P+ A+ NL Q Y+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
YYQ+ALE+ D N A+ K NL + KQG
Sbjct: 65 YYQKALEL--------DPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
+ A+ NL Q Y+E YYQ+ALE+ D N A+ NL + Y KQG
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQG 57
Query: 434 KYKEAEILYKQVL 446
Y EA Y++ L
Sbjct: 58 DYDEAIEYYQKAL 70
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 1e-06
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ A L Y Q Y EA AL + A NL Y K+G
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--------AEAWYNLGNAYYKQG 57
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
Y EA ++ALE+ P+ A+ NL Q Q
Sbjct: 58 DYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQ 90
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 9/116 (7%)
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
A L K+ + A +A E+ P + N A + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKG 52
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
Y + ++A+E+ + D +AK + + Y K+ KYK+A Y + L
Sbjct: 53 DYNKCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK 352
A L + + A + A + + N A +Y ++G Y
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYN 55
Query: 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+ LC++A+E+ + +++ +AK + + KY++ +Y ++L
Sbjct: 56 KCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 47/151 (31%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
A + L + ++ ++Y +A E+ D N A+ Y ++G Y
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYN 55
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496
+ + ++A+E+ + D
Sbjct: 56 KCR--------------------------------------ELCEKAIEVGR-ENREDYR 76
Query: 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+AK + + Y K+ KYK+A Y + L
Sbjct: 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P T + A VY ++ Y + L A+ + + E++ +A + Y K
Sbjct: 34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSYFKE 92
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392
KYK+A ++L PDV K+ + + Q +
Sbjct: 93 EKYKDAIHFYNKSLAE------HRTPDVLKKCQQAEKILKEQER 130
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-09
Identities = 47/308 (15%), Positives = 78/308 (25%), Gaps = 88/308 (28%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284
Y +Q +Y L++++ +S A + L S IV +
Sbjct: 44 YLAQRKYG-------VVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSV 96
Query: 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344
T L + A +Y A L+ ++ + +
Sbjct: 97 ----DVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAM-------------TVQI 139
Query: 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA--LLCQNQSKYEEVERYYQR 402
K + A K+ + D A L K ++ +Q
Sbjct: 140 LLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462
+ S N A+C++ QG+++ A
Sbjct: 192 MADKC--------SPTLLLLNGQAACHMAQGRWEAA------------------------ 219
Query: 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522
E Q AL+ DS +T NL GK E Y
Sbjct: 220 --------------EGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRY 257
Query: 523 KQVLTRAH 530
L AH
Sbjct: 258 LSQLKDAH 265
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 1e-08
Identities = 30/228 (13%), Positives = 58/228 (25%), Gaps = 40/228 (17%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L Y Q KY + + + AV A +
Sbjct: 40 LYRAYLAQRKYGVVLDEIKPSSA-------PELQAVRM----FAEYLASHSRRDAI---- 84
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
E+ ++ L A + + R + +
Sbjct: 85 --VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE----------- 131
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREK 478
LK + A K++ D D +
Sbjct: 132 --CMAMTVQILLKLDRLDLARKELKKMQ---------DQDEDATLTQLATAWVSLAAGGE 180
Query: 479 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
Q A I++ ++ S N A+C++ QG+++ AE + ++ L
Sbjct: 181 KLQDAYYIFQ-EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 4e-07
Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 40/217 (18%)
Query: 215 LRTLHNLVIQYASQGRYEVAVPLCKQALE---DLEKTSGKYEAAETLEDC-----ALRSR 266
L+ + AS R + V + + D+ T+ AA ALR+
Sbjct: 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124
Query: 267 KESYDIVKQAKVAQILGSGGHD-------------HPDVATMLNILALV--YRDQNKYKE 311
+ + A QIL D A V K ++
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
A + + + + LN A + +G+++ AE + + AL+
Sbjct: 185 AYYIFQEMA--------DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD------ 230
Query: 372 EHPDVAKQLNNLALLCQNQSKYEE-VERYYQRALEIY 407
+ L NL +L Q+ K E RY + + +
Sbjct: 231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-09
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 14/105 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
T LA + K A L + +E PD +L L + + +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTD 58
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
+ Y + +E+ ++ K + L LK +
Sbjct: 59 DAIDTYAQGIEVA-----REEGT-QKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-08
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431
E P+ LA ++ +E D + T +L Y +
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYER 53
Query: 432 QGKYKEAEILYKQVL 446
+ +A Y Q +
Sbjct: 54 LDRTDDAIDTYAQGI 68
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 14/111 (12%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P+ LA + + A L + + T +L LY +
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD--------YVGTYYHLGKLYERLD 55
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYY 400
+ +A + +E+ +E K L+ L E ++
Sbjct: 56 RTDDAIDTYAQGIEVA-----REEGT-QKDLSELQDAKLKAEGLEHHHHHH 100
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-08
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 16/117 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L +LA + G Y++A + + + ++ L Q +Y+
Sbjct: 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------HYDSRFFLGLGACRQAMGQYD 72
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
Y + D + + A C L+ G+ EAE
Sbjct: 73 LAIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-08
Identities = 13/107 (12%), Positives = 23/107 (21%), Gaps = 16/107 (14%)
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERY 399
+ K EA + + P+ + +L L K
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIA 73
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
A + D LA + + A + L
Sbjct: 74 LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWL 112
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 13/108 (12%), Positives = 21/108 (19%), Gaps = 16/108 (14%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L EAA + +L + + K A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPER--------EEAWRSLGLTQAENEKDGLAIIAL 74
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
A + P LA+ N+ + L
Sbjct: 75 NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 8e-04
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P+ L L + K A LN A + ++ A LAV +
Sbjct: 47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAV----HAALAVSHTNE 98
Query: 349 GKYKEAEPLCKRALEIREK 367
A + L + +
Sbjct: 99 HNANAALASLRAWLLSQPQ 117
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 60/383 (15%), Positives = 121/383 (31%), Gaps = 135/383 (35%)
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRR-------LVQENAWLRDELANT 124
SL+ + L +V + L + ++ Q L +V ++ E+ +RD LA
Sbjct: 290 SLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATW 344
Query: 125 QQ-KLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFP 183
K + ++ + +E SS+ + + D V FP
Sbjct: 345 DNWKHVNCDKLTTIIE---------SSLNVLEPAEY-----------RKMFDRLSV--FP 382
Query: 184 DEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEV---AVPLCKQ 240
+ IP L L + + + +V L K
Sbjct: 383 PS-------------------AH----IPTIL-----LSLIWFDVIKSDVMVVVNKLHKY 414
Query: 241 ALEDLEKTSGKYEAAETLEDCALRSRK-------------ESYDIVKQAKVAQILGSG-- 285
+L + + ++ L + + Y+I K ++
Sbjct: 415 SLVEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 286 -------GHDH---PDVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENH 331
GH H + + + +V+ D + K IR + N
Sbjct: 471 QYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQK-------------IRHDSTAWN- 515
Query: 332 AAVAATLNNLAVLYGKRGKYK----EAEPLCKRALE--------IREKVLGKEHPDVAKQ 379
A + LN L L YK + +P +R + I E ++ ++ D+ +
Sbjct: 516 -ASGSILNTLQQLK----FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR- 569
Query: 380 LNNLALLCQNQSKYEEVERYYQR 402
+AL+ ++++ +EE + QR
Sbjct: 570 ---IALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 6e-04
Identities = 41/319 (12%), Positives = 94/319 (29%), Gaps = 91/319 (28%)
Query: 238 CKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297
K L E + ++D +S I+ + ++ I+ S D +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQD-MPKS------ILSKEEIDHIIMS-----KDAVSGTL 65
Query: 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY-GKRGK-YKEAE 355
L + + + + + L I K L + + +Y +R + Y + +
Sbjct: 66 RLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 356 PLCKR-------ALEIREKVLG-KEHPDVA--------KQLNNLAL-LCQNQSKYEEVER 398
K L++R+ +L + +V K +AL +C + +V+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLS----YKVQC 178
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458
+ +I+ +L E + + + ++ +
Sbjct: 179 --KMDFKIF---------------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 459 GDNKPIWQDRQKNKAKNR------EKYYQRALEIYELKLGPDD---SNVAKTKNNLASCY 509
+ + + + K Y+ L + L + + N SC
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--L----LNVQNAKAWNAFNL--SC- 266
Query: 510 LKQGKYKEAEILYKQVLTR 528
+IL + TR
Sbjct: 267 ---------KIL---LTTR 273
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 5e-07
Identities = 28/143 (19%), Positives = 45/143 (31%), Gaps = 25/143 (17%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A L K ++ A +A+E+ +P A N A Y
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYA 63
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
+ +RA+ I D +K + K+ EA YK+ L
Sbjct: 64 GAVQDCERAICI--------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL-------- 107
Query: 455 GACDGDNKPIWQDRQKNKAKNRE 477
D DN+ + + + K RE
Sbjct: 108 -ELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-05
Identities = 28/156 (17%), Positives = 44/156 (28%), Gaps = 54/156 (34%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
+E A++L +E +Y +A+E+ + A N A+ Y
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYS 57
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELK 490
K G Y A QD +RA+ I
Sbjct: 58 KLGNYAGAV--------------------------QD------------CERAICI---- 75
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
D +K + K+ EA YK+ L
Sbjct: 76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-07
Identities = 13/105 (12%), Positives = 26/105 (24%), Gaps = 14/105 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L Y + ++ A P + AL+ P + L Q Q
Sbjct: 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRA 70
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
+ ++ L + + L + + E
Sbjct: 71 GARQAWESGLAAAQ------SRGDQQVVKELQVFLRRLAREDALE 109
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420
E E +L + D L +++ + + AL+ D +
Sbjct: 4 ITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSV 54
Query: 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
L QG A ++ L A R
Sbjct: 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-05
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
D + L Y + ++ A L AL + L +
Sbjct: 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--------SVAWKWLGKTLQGQ 66
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ 401
G A + L + D + + L + + ++ + +E ++
Sbjct: 67 GDRAGARQAWESGLAAAQ-----SRGD-QQVVKELQVFLRRLAREDALEHHHH 113
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 16/133 (12%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
+Y + + L + EK + + + A NLA+ Y K +Y +A C +AL +
Sbjct: 289 IQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347
Query: 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426
K L +++E + +++ LE+ P + + ++
Sbjct: 348 -------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-----PQNKAA---RLQIS 392
Query: 427 SCYLKQGKYKEAE 439
C K ++ E +
Sbjct: 393 MCQKKAKEHNERD 405
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 25/177 (14%)
Query: 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412
E + ++ KE + A + + KY + Y + + E++ G
Sbjct: 244 EVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG 303
Query: 413 PDDSNVAKTK-------NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN-KPI 464
+ ++ NLA CYLK +Y +A + L D N K +
Sbjct: 304 LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL---------GLDSANEKGL 354
Query: 465 WQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
+ ++ +A+ ++ A +E L++ P + + ++ C K ++ E +
Sbjct: 355 Y---RRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA---RLQISMCQKKAKEHNERD 405
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 347 KRGKYKEAEPLCKRALEI--REKVLGKEHPDVAKQL-----NNLALLCQNQSKYEEVERY 399
K GKY +A + + E L ++ ++ NLA+ +Y +
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+AL + DS K L +++ A+ +++VL
Sbjct: 340 CDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
+YK+ + L + + + A A+ NLA+ + K + A C +ALE+
Sbjct: 168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 225
Query: 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426
+ K L+ + +E +Q+ L++Y P++ K LA
Sbjct: 226 ------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PNNKAA---KTQLA 271
Query: 427 SCYLKQGKYKEAE-ILYKQVLTRAHERE 453
C + + E LY + R E E
Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEEE 299
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK-------N 423
+E + + + + + KY++ Y++ + E + + K +
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN-KPIWQDRQKNKAKNREKYYQR 482
NLA C+LK + A + L D +N K + ++ +A ++
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKAL---------ELDSNNEKGLS---RRGEAHLAVNDFEL 248
Query: 483 ALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE-ILYKQVLTRAHERE 533
A ++ L+L P++ K LA C + + E LY + R E E
Sbjct: 249 ARADFQKVLQLYPNNKAA---KTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 24/161 (14%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY- 345
+P + +L Y QN Y + AL + GEN LA +
Sbjct: 38 RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL----RGENAEL----YAALATVLY 89
Query: 346 --GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
+ + + +AL + + L LA Q+ Y + +Q+
Sbjct: 90 YQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKV 141
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
++ L N + ++ L Q + +
Sbjct: 142 MD-----LNSPRINRTQLVESINMAKLLQRRSDLEHHHHHH 177
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 33/147 (22%)
Query: 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+Q E + Q + P + ++ L YL Q Y + + Y+Q L
Sbjct: 21 ASQQNPEAQLQALQDKIRAN-----PQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 448 RAHEREFGACDGDNKPIWQD------RQKNKAKNRE--KYYQRALEIYELKLGPDDSNVA 499
G+N ++ Q ++ + +AL + DSN
Sbjct: 73 L---------RGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEI 115
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
LAS Q Y +A L+++V+
Sbjct: 116 TALMLLASDAFMQANYAQAIELWQKVM 142
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 25/140 (17%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
R +Y +A L +AL I P L+N A ++E+ + A +
Sbjct: 23 ARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
D +K + L YK A+ Y++ + +G+
Sbjct: 75 --------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI---------EAEGNGGSDAM 117
Query: 467 DRQKNKAKNREKYYQRALEI 486
R K + + R E
Sbjct: 118 KRGLETTKRKIEEANRGAEP 137
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 22/134 (16%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+ +Y +A +L AL+I L+N A Y G++++A + A +
Sbjct: 24 RKEYSKAIDLYTQALSIAPA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
P +K + L L + + Y+ + Y++ +E + + K L
Sbjct: 76 --------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIE-----AEGNGGS-DAMKRGL 121
Query: 426 ASCYLKQGKYKEAE 439
+ K +
Sbjct: 122 ETTKRKIEEANRGA 135
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 307 NKYKEAANLLNDALTIR--EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364
+Y+ A + D + K A N+A K +Y EA C L
Sbjct: 200 QQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259
Query: 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424
K L + + +++A + PDD + +
Sbjct: 260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-----PDDKAI---RRE 303
Query: 425 LASCYLKQGKYKEAE 439
L + ++ + +
Sbjct: 304 LRALAEQEKALYQKQ 318
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 27/184 (14%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ--------- 379
E A K K +EA + A+ + +
Sbjct: 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
N+A +Y+E + L + K + G+ A
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSAR 284
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
+++ D+K I ++ + + + YQ+ E+Y+ D A
Sbjct: 285 DDFRKAQK---------YAPDDKAIRRELRALAEQEKA-LYQKQKEMYKGIFKGKDEGGA 334
Query: 500 KTKN 503
K+K+
Sbjct: 335 KSKS 338
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 18/149 (12%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATL-NNLAVLYGKRGKYKEAEPLCKRALEIR 365
KYKEA + ++ L + + + NLA Y K Y +A + L+I
Sbjct: 59 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
+ K L L + EE + +A + P++ ++ +N+
Sbjct: 118 -------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLDI---RNSY 162
Query: 426 ASCYLKQGKYKEAE-ILYKQVLTRAHERE 453
C K + ++ + + + + + E
Sbjct: 163 ELCVNKLKEARKKDKLTFGGMFDKGPLYE 191
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 2e-04
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 300 ALVYRDQNKYKEAANLLNDALTIREKTLGE----NHAAVAATLNNLAVLYGKRGKYKEAE 355
A +Y EAA A+ I E + A LA + EA
Sbjct: 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77
Query: 356 PLCKRALEIREKVLGKEHPDVAKQ----LNNLALLCQNQSKYEEVERYYQRALEI 406
+AL + G+ + D K + + AL + E +++ +E+
Sbjct: 78 HSADKALHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 2e-04
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPD----VAKQLNNLALLCQNQSKYEEVERYYQR 402
G+Y EA C+RA+EI + +E D A LA ++E +
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82
Query: 403 ALEIYELK--LGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453
AL + + L D+ + + A G+ EA +K+V+ ER+
Sbjct: 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 25/144 (17%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K Y+ A +A+E+ +P A N +L Y RA+E+
Sbjct: 25 KAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
D K A+ + GK++ A Y+ V+ +K
Sbjct: 77 --------DKKYIKGYYRRAASNMALGKFRAALRDYETVVK---------VKPHDKDAKM 119
Query: 467 DRQKNKAKNREKYYQRALEIYELK 490
Q+ ++K ++RA+ E K
Sbjct: 120 KYQECNKIVKQKAFERAIAGDEHK 143
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 31/132 (23%), Positives = 40/132 (30%), Gaps = 20/132 (15%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
KY EA RA+ +P VA N AL + E+ +RALE+
Sbjct: 21 VGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
D K L C L+ Y EA L RA+ I
Sbjct: 73 --------DGQSVKAHFFLGQCQLEMESYDEA----IANLQRAYSLAKEQRLNFGDDIPS 120
Query: 467 DRQKNKAKNREK 478
+ K K
Sbjct: 121 ALRIAKKKRWNS 132
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 24/139 (17%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
KY EAA A+T VA N A+ Y K + ++A C+RALE+
Sbjct: 22 GRKYPEAAACYGRAITRNPL--------VAVYYTNRALCYLKMQQPEQALADCRRALEL- 72
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
K L Y+E QRA + +
Sbjct: 73 -------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL--------AKEQRLNFGDD 117
Query: 426 ASCYLKQGKYKEAEILYKQ 444
L+ K K + ++
Sbjct: 118 IPSALRIAKKKRWNSIEER 136
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359
L++ D A+ LL + + E A A A++ R +
Sbjct: 206 YLLHGDDKSLNRASELLGEIVQSSP----EFTYARA----EKALVDIVRHSQHPLDEKQL 257
Query: 360 RALE--IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417
AL I V E +++ A+ + K +E + +++ + S
Sbjct: 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------EMSW 310
Query: 418 VAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ L Y +G +EA Y
Sbjct: 311 LNY--VLLGKVYEMKGMNREAADAYLTAF 337
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 34/215 (15%)
Query: 196 TPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAA 255
T +Q A Q + + L Q + +P L + Y+A
Sbjct: 155 TNGNQLAIQNDLLESLSKALN----QPWPQRMQETLQKILPHRGALLTNF------YQAH 204
Query: 256 ETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKY----KE 311
+ L +S + +++ + + P+ ALV ++ ++
Sbjct: 205 DYLLHGDDKSLNRASELLGEIVQSS---------PEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
LN + N+ ++ AV +GK E+ +++ L
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTGIDLEMSWLN- 312
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
L + + + E Y A +
Sbjct: 313 --------YVLLGKVYEMKGMNREAADAYLTAFNL 339
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 307 NKYKEAANLLNDALT---IREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
+ Y++A L+ + E E N++ Y G EAE L+
Sbjct: 32 DAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
K L A K +E E + L + +
Sbjct: 92 R--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-------HPAAASVVAR 136
Query: 424 NLASCYLKQGKYKEAE 439
+ ++ + K
Sbjct: 137 EMKIVTERRAEKKADS 152
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
Y A AL L A N A + K Y +AE +A+E
Sbjct: 41 CGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K L + + + ++ QR + +
Sbjct: 96 --------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.96 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.93 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.93 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.89 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.88 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.85 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.85 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.85 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.85 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.84 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.84 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.84 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.84 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.83 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.82 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.82 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.81 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.76 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.76 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.75 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.75 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.73 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.71 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.7 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.7 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.7 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.68 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.63 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.56 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.56 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.56 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.55 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.55 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.55 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.52 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.52 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.51 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.49 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.48 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.48 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.48 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.44 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.42 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.39 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.37 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.37 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.37 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.36 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.35 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.35 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.34 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.34 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.34 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.34 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.34 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.32 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.31 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.31 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.3 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.28 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.26 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.26 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.26 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.23 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.2 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.19 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.18 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.18 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.18 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.17 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.09 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.07 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.05 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.05 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.04 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.03 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.02 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.93 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.9 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.82 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.64 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.57 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.47 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.2 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.08 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.04 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.02 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.79 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.69 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.39 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.17 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.05 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.98 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.8 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.58 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 96.18 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.85 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 95.81 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 95.55 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.33 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.71 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 94.32 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.27 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.25 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.25 | |
| 1deb_A | 54 | APC protein, adenomatous polyposis coli protein; c | 94.08 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.74 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.62 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.55 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.8 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.74 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 92.44 | |
| 2xdj_A | 83 | Uncharacterized protein YBGF; unknown function; 1. | 91.92 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 91.69 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.69 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.58 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 91.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 91.1 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 91.04 | |
| 3ubw_A | 261 | 14-3-3E, 14-3-3 protein epsilon; adapter protein, | 90.68 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 90.65 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.59 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 90.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.44 | |
| 3uzd_A | 248 | 14-3-3 protein gamma; structural genomics, SGC, st | 90.31 | |
| 2npm_A | 260 | 14-3-3 domain containing protein; cell regulator p | 89.38 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.26 | |
| 3iqu_A | 236 | 14-3-3 protein sigma; signal transuction, nucleus, | 88.23 | |
| 2o8p_A | 227 | 14-3-3 domain containing protein; signaling protei | 88.21 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.47 | |
| 1ci6_A | 63 | Transcription factor ATF-4; BZIP; 2.60A {Homo sapi | 86.66 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.68 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 85.28 | |
| 2o8p_A | 227 | 14-3-3 domain containing protein; signaling protei | 84.36 | |
| 3ra3_B | 28 | P2F; coiled coil domain, fiber, KIH interactions, | 83.5 | |
| 2npm_A | 260 | 14-3-3 domain containing protein; cell regulator p | 82.68 | |
| 3a7p_A | 152 | Autophagy protein 16; coiled-coil, coiled coil, cy | 81.87 | |
| 2w6b_A | 56 | RHO guanine nucleotide exchange factor 7; X-RAY cr | 81.69 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 81.67 | |
| 2xdj_A | 83 | Uncharacterized protein YBGF; unknown function; 1. | 81.58 | |
| 2w83_C | 77 | C-JUN-amino-terminal kinase-interacting protein 4; | 81.35 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 81.19 | |
| 1nkp_B | 83 | MAX protein, MYC proto-oncogene protein; transcrip | 80.31 |
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-26 Score=223.08 Aligned_cols=284 Identities=76% Similarity=1.135 Sum_probs=239.5
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
....+.++|..+.++..+|.++...|++++|+.+|+++++......
T Consensus 16 ~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---------------------------------- 61 (311)
T 3nf1_A 16 FQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS---------------------------------- 61 (311)
T ss_dssp CSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc----------------------------------
Confidence 3446678899999999999999999999999999999999887765
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
+.+.+..+.++..+|.+|...|++++|+.+|++++.+.....+++++....++..+|.+|...|++++|+.+|++++.
T Consensus 62 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 62 --GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp --CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 557788999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
+.++..+++++....++.++|.++...|++++|+.+|++++.++....+++++....++..+|.+|...|++++|+.+|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998888899999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHhhhhcccCcccCCChhhHH-----------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 444 QVLTRAHEREFGACDGDNKPIWQ-----------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 444 ~al~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
+++...+...++.........+. ....+.+..+...+.++.. .+|....++..+|.+|...
T Consensus 220 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~ 291 (311)
T 3nf1_A 220 EILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQ 291 (311)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHC
Confidence 99998776443332222222222 1122233333444444443 3788999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q psy597 513 GKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 513 g~~~~A~~~~~~al~~~~~ 531 (546)
|++++|..+|++++++.|+
T Consensus 292 g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 292 GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp TCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-24 Score=205.88 Aligned_cols=268 Identities=69% Similarity=1.001 Sum_probs=224.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHH
Q psy597 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304 (546)
Q Consensus 225 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 304 (546)
....|++++|+.+|+++++.+.+.. +.++|..+.++..+|.+|.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~------------------------------------~~~~~~~~~~~~~l~~~~~ 54 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTS------------------------------------GHDHPDVATMLNILALVYR 54 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHH------------------------------------CSSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhc------------------------------------CCCCHHHHHHHHHHHHHHH
Confidence 3467999999999999999888766 5577899999999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..|++++|+.+|++++.+.....+++++....++..+|.+|...|++++|+.+|.+++.+.++..++++|....++.++|
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhh
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPI 464 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 464 (546)
.++...|++++|+.+|+++++++....++++|....++.++|.+|..+|++++|+.+|++++...+..............
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999988776555444444333
Q ss_pred HHH----HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 465 WQD----RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 465 ~~~----~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+.. ...+........+..+...+. ....++|....++..+|.+|...|++++|..+|++++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 215 WMHAEEREESKDKRRDSAPYGEYGSWYK-ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 331 112222222334555554433 3345578999999999999999999999999999998753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-24 Score=216.84 Aligned_cols=314 Identities=16% Similarity=0.090 Sum_probs=255.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.+.....++.+|..++..|++++|+.+|+++++..+........+............+...+...+..+..+.....+.+
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 47788889999999999999999999999999973321111111222222223333444444444444444433345678
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----------------HHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK-----------------YKE 353 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~-----------------~~~ 353 (546)
..+.++..+|.+|...|++++|+.+|++++.+.+.. ++.+....++.++|.+|...|+ +++
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 899999999999999999999999999999999887 6778889999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|+.++.+++.+.... .+++....++.++|.++...|++++|+.+|++++++.... ++......++.++|.+|...|
T Consensus 202 A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 202 AVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCc
Confidence 999999999998777 5567788999999999999999999999999999998775 445667779999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccC--cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 434 KYKEAEILYKQVLTRAHEREFG--ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++++|+.+|++++...+..... ........+.++...|++++|..++++++.+..... +.+....++..+|.+|..
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSLGNAHSA 355 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHHHH
Confidence 9999999999999988754221 123445566778899999999999999999987763 356778899999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhh
Q psy597 512 QGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 512 ~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|++++|..+|++++++.++.
T Consensus 356 ~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCHH
T ss_pred hccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-24 Score=214.51 Aligned_cols=311 Identities=15% Similarity=0.103 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
....+..+|.++...|++++|+.+|+++++..+........+............+...+......+..+.....+.+..+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 35567778888888888888888888888763221110111111222222233333444444444333333345678889
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--------------------HHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--------------------YKE 353 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--------------------~~~ 353 (546)
.++..+|.+|...|++++|+.++.+++.+.+.. ++.+..+.++..+|.+|...|+ +++
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999887 6677788899999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|+.++.+++.+.... ++++..+.++.++|.++...|++++|+.+|++++.+.... ++.+..+.++.++|.+|...|
T Consensus 166 A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcC
Confidence 999999999998776 5567888999999999999999999999999999998775 456677889999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccC--cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 434 KYKEAEILYKQVLTRAHEREFG--ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++++|+.+|++++.+.+..... ........+.++...|++++|..++.+++.+.... .+.+....++..+|.+|..
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999987764321 12344556777889999999999999999987765 3356778899999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhh
Q psy597 512 QGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 512 ~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|++++|+.+|++++++.+..
T Consensus 320 ~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=205.93 Aligned_cols=308 Identities=15% Similarity=0.108 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHH--HHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLED--CALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~--~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
...++..|..+...|++++|+.+|+++++..+.. ....+..+.. .......+...+......+..+.....+.+..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED--LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4455666677777777777777777766652211 1111111111 11222222223333332222222223367788
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--------------------HH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--------------------YK 352 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--------------------~~ 352 (546)
+.++..+|.+|...|++++|+.++.+++.+.+.. ++.+....++..+|.++...|+ ++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999887 6677788899999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
+|+.++++++.+.+.. ++.+....++.++|.++...|++++|+.++++++++.... ++.+....++.++|.+|...
T Consensus 161 ~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 161 AAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHc
Confidence 9999999999998776 5567788899999999999999999999999999998776 44667788999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhcccC--cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVLTRAHEREFG--ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~ 510 (546)
|++++|+.++++++...+..... ........+.++...|+++.|..++.+++.+..... +.+....++..+|.+|.
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYT 314 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHH
Confidence 99999999999999987764221 123344566678899999999999999999987663 35667889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhh
Q psy597 511 KQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..|++++|..++++++++.++.
T Consensus 315 ~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHTCHHHHHHHHHHHHHC----
T ss_pred HcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-24 Score=213.94 Aligned_cols=268 Identities=15% Similarity=0.097 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.++..|..+...|+|++|+.+|++++....... +.+..+.++
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~~a~~~ 146 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--------------------------------------DRIEKAEFF 146 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--------------------------------------CHHHHHHHH
Confidence 456699999999999999999999998755433 567789999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGEN-HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+.+|.+|...|++++|+.++.+++.+++.. ++ .+..+.++.++|.+|...|++++|+.+|++++++.++. ++++.
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~ 222 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEH--EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQL 222 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHH
Confidence 999999999999999999999999999876 44 67788999999999999999999999999999998877 55677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
.+.++.++|.+|...|++++|+.+|++++++.+.. .+.|..+.++.++|.+|..+|++++|+.++++++.+.+.....
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 300 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 88999999999999999999999999999998775 3337789999999999999999999999999999987653221
Q ss_pred ccc-CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 456 ACD-GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 456 ~~~-~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
... .....+..+...|+. ..+.+|+..+.+. ...+....++..+|.+|...|++++|..+|++++++.+...-
T Consensus 301 ~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 111 122344556666664 5677777777766 346778889999999999999999999999999999865443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=216.65 Aligned_cols=291 Identities=23% Similarity=0.254 Sum_probs=203.9
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
......+|..+.+++.+|.+|...|++++|+..|++++...+... |+++.|...+..++...++...
T Consensus 57 ~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 333445677788899999999999999999999999887644321 4445555555444433222111
Q ss_pred HHHHH-----------HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy597 272 IVKQA-----------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN 340 (546)
Q Consensus 272 ~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~ 340 (546)
..... .+...+.......|..+.++..+|.++...|++++|+..|++++.+ .|....++..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 208 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYIN 208 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 11000 0000000001123555667777788888888888888888887776 3444667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
+|.++...|++++|+..|.+++.+ +|....++.++|.++...|++++|+.+|++++++ .|..+.
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 272 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPD 272 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHH
Confidence 888888888888888888888777 3666777888888888888888888888888876 666667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 500 (546)
++.++|.++...|++++|+.+|++++...|.+. ......+..+...|++++|...|++++.. .|....
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 340 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHA----DSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA 340 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHH
Confidence 788888888888888888888888887755432 23445566677788888888888888765 566777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
++..+|.+|...|++++|+.+|++++++.|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888999999999999999999988886654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=201.74 Aligned_cols=268 Identities=17% Similarity=0.123 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
...++..|..+...|+|++|+.+|++++...+... +.+..+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~~a~ 142 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--------------------------------------DDIEKAE 142 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC--------------------------------------ChHHHHH
Confidence 34678899999999999999999999998765533 5678899
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN-HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
+++.+|.+|...|+++.|+.++.+++.+++.. ++ .+..+.++.++|.+|...|++++|+.+|.+++++.++. ++.
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~ 218 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNH--PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QND 218 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 99999999999999999999999999998875 33 45678999999999999999999999999999998776 455
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+..+.++.++|.+|...|++++|+.+|++++.+++.. .+|..+.++.++|.+|..+|++++|+.++++++.+.+...
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 6778899999999999999999999999999988765 2556689999999999999999999999999999876533
Q ss_pred cCcccC-CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 454 FGACDG-DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 454 ~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...... .......+...++. ..+.+|+..+.+. ...+....++..+|.+|...|++++|..+|+++++..+..
T Consensus 296 ~~~~~~~~~~l~~ly~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 296 HKFYKELFLFLQAVYKETVDE----RKIHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp CSCHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 211111 11111122233332 5567777776653 3357778889999999999999999999999999987654
Q ss_pred c
Q psy597 533 E 533 (546)
Q Consensus 533 ~ 533 (546)
.
T Consensus 370 ~ 370 (378)
T 3q15_A 370 L 370 (378)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=198.15 Aligned_cols=296 Identities=16% Similarity=0.115 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHH--hhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL--RSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
...++..+|.+|...|++++|+.+|++++...+........+..+...+. ....+...+......+..+.....+.+.
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 125 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc
Confidence 46889999999999999999999999999998887666555555544443 2333344444444444433333345677
Q ss_pred HHHHHHHHHHHHHHhhc--------------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 292 VATMLNILALVYRDQNK--------------------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY 351 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~ 351 (546)
.+.++..+|.+|...|+ +++|+.++.+++.+.... ++.+..+.++.++|.+|...|++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 203 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNF 203 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBH
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCH
Confidence 78899999999999999 999999999999998887 67788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 352 KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
++|+.++++++.+.... ++++..+.++.++|.++...|++++|+.+|++++.+.... ++.+....++.++|.+|..
T Consensus 204 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHH
Confidence 99999999999998775 4456678899999999999999999999999999998765 4456678899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhhccc--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 432 QGKYKEAEILYKQVLTRAHEREF--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 432 ~g~~~eA~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
.|++++|+.+|++++.+.+.... .........+.++...|++.+|..++.+++.+.... .+.+....++..+|.++
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQ 357 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHH
Confidence 99999999999999998765422 112344456777889999999999999999998766 33677889999999999
Q ss_pred HHcCCHHH
Q psy597 510 LKQGKYKE 517 (546)
Q Consensus 510 ~~~g~~~~ 517 (546)
...|+...
T Consensus 358 ~~~g~~~~ 365 (406)
T 3sf4_A 358 MVLGLSYS 365 (406)
T ss_dssp HHHHTTSC
T ss_pred HHhhHhHH
Confidence 99998744
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=207.14 Aligned_cols=249 Identities=17% Similarity=0.174 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.....++.+|..+...|++++|+.+|++++.. .|..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p~~ 98 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------------------------------------------DPGD 98 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------CTTC
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------------------CcCC
Confidence 34556899999999999999999999999984 3555
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.+++.+|.+|...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+........
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence 778999999999999999999999999988 344577899999999999999999999999999852221000
Q ss_pred Ch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HP--DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.. .....+..+|.++...|++++|+.+|++++.+ .|. .+.++.++|.+|...|++++|+.+|++++..
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHH--------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00 01233445699999999999999999999998 555 6778999999999999999999999999998
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+... ......+.++...|++++|...|++++.+ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 243 ~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 243 RPEDY----SLWNRLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66532 34566777799999999999999999988 6777889999999999999999999999999999
Q ss_pred hhhhc
Q psy597 529 AHERE 533 (546)
Q Consensus 529 ~~~~~ 533 (546)
.|+..
T Consensus 311 ~~~~~ 315 (365)
T 4eqf_A 311 QRKSR 315 (365)
T ss_dssp HHCC-
T ss_pred CcccC
Confidence 98643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=206.69 Aligned_cols=287 Identities=17% Similarity=0.146 Sum_probs=226.5
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
+..........+|.++.++..+|.++...|++++|+.+++++++..+... .+............+...+...+..+
T Consensus 18 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA----EAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333444445677788899999999999999999999999988643221 12222222222222233333333222
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
.. ..|....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|+
T Consensus 94 l~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 94 LR------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HH------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HH------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 22 23566778999999999999999999999999987 34556788899999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+++.. .|....++.++|.++...|++++|+.+|++++.+ +|....++.++|.++...|++++|+
T Consensus 160 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 160 KAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99987 4777889999999999999999999999999998 7788889999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
..|++++...|... ......+..+...|++++|...|++++.. .|....++..+|.+|...|++++|+
T Consensus 224 ~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 224 AAYLRALSLSPNHA----VVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHhhCcCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999998865432 33455677788999999999999999976 6667788999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
.+|+++++..|..
T Consensus 292 ~~~~~al~~~p~~ 304 (388)
T 1w3b_A 292 DCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhhCccc
Confidence 9999999987654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=190.68 Aligned_cols=200 Identities=21% Similarity=0.213 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.++.+++.+|.++...|++++|+..|+++++ ..|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------------------------~~p~ 37 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK--------------------------------------------ENPQ 37 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------------------------TSSS
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------hCCC
Confidence 55667899999999999999999999999997 4677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-----------GKYKEAEPLCKR 360 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~ 360 (546)
.+.+++.+|.++...|++++|+..|++++.+ .|....++.++|.++... |++++|+..|++
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 109 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence 7889999999999999999999999999998 455578999999999999 999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++++ .|....++.++|.++...|++++|+..|++++++ + ..+.++.++|.+|...|++++|+.
T Consensus 110 al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 110 AERV--------NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHh--------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 9998 4888899999999999999999999999999999 4 567889999999999999999999
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.|++++.. .|....++..+|.++...|++++|+.
T Consensus 173 ~~~~al~~----------------------------------------------~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 173 QYAKALEQ----------------------------------------------APKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHH----------------------------------------------STTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHh----------------------------------------------CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 99999986 56667788999999999999999999
Q ss_pred HHHHHH
Q psy597 521 LYKQVL 526 (546)
Q Consensus 521 ~~~~al 526 (546)
+|+++-
T Consensus 207 ~~~~~~ 212 (217)
T 2pl2_A 207 AAALEH 212 (217)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-22 Score=204.59 Aligned_cols=296 Identities=15% Similarity=0.124 Sum_probs=212.8
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cCchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-------------SGKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
......+|..+..++.+|..++..|++++|+.+|+++++..+.. .+.++.|...+..++...+....
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 95 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 33445567777777888888888888888888887777643221 14555555555555443322221
Q ss_pred HHHHH-----------HHHHHhccCCCCChhHH---HHH------------HHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy597 272 IVKQA-----------KVAQILGSGGHDHPDVA---TML------------NILALVYRDQNKYKEAANLLNDALTIREK 325 (546)
Q Consensus 272 ~~~~~-----------~~~~~l~~~~~~~~~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~ 325 (546)
..... .+...+.......|... .++ ..+|.++...|++++|+.+|++++..
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 172 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--- 172 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 11100 01111111111223222 333 34477788899999999999998876
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 326 ~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
.|....++..+|.+|...|++++|+.+|++++... |....++..+|.+|...|++++|+.+|++++.
T Consensus 173 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 173 -----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34446789999999999999999999999999885 66678999999999999999999999999998
Q ss_pred HHHHhcCCCChHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchh
Q psy597 406 IYELKLGPDDSNVAKTKNN------------LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473 (546)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~------------La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (546)
+ .|....++.. +|.++...|++++|+.+|++++...+.+...........+.++...|++
T Consensus 240 ~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 240 L--------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred h--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 7 4444444443 3999999999999999999999976553221122345566778899999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 474 KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 474 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
++|...+.+++.. .|....++..+|.+|...|++++|+.+|++++++.|+.
T Consensus 312 ~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 312 VEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 9999999999987 67778899999999999999999999999999987764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-22 Score=195.36 Aligned_cols=294 Identities=16% Similarity=0.128 Sum_probs=220.6
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
+...+.......|..+.+++.+|.++...|++++|+..|+++++..+... .+............+...+......+
T Consensus 22 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 22 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444444445677788999999999999999999999999998644322 11111122222222222222222222
Q ss_pred HHhccCCCCCh---hHHHHHHHH------------HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy597 280 QILGSGGHDHP---DVATMLNIL------------ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344 (546)
Q Consensus 280 ~~l~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~ 344 (546)
. ...| ....++..+ |.++...|++++|+..+++++... |....++..+|.+
T Consensus 98 ~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 98 L------KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--------VWDAELRELRAEC 163 (359)
T ss_dssp H------TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHH
T ss_pred H------hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCchHHHHHHHHH
Confidence 1 1234 444555544 799999999999999999999873 3446789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH---
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT--- 421 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~--- 421 (546)
+...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|+++++.. ++.+.....
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~ 230 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQ 230 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHH
Confidence 99999999999999999987 36677899999999999999999999999999871 223322221
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC
Q psy597 422 ------KNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495 (546)
Q Consensus 422 ------~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 495 (546)
...+|.++...|++++|+..|++++...+.............+.++...|+++.|...|.+++.. .
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~ 302 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------E 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 23558999999999999999999999876533222222334667788999999999999999987 6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 496 ~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
|....++..+|.+|...|++++|..+|++++++.|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7778899999999999999999999999999987654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=182.91 Aligned_cols=241 Identities=15% Similarity=0.135 Sum_probs=210.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+..+|.+++..|++++|+.+|+++++. . .
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----------------------------------------~----~ 36 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----------------------------------------H----K 36 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------S----C
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------------h----c
Confidence 467889999999999999999999999999985 1 3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.++..+|.++...|++++|+.++.+++.+.+.. +++.+..+.++..+|.++...|++++|+.+|++++.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------ 109 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH------ 109 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------
Confidence 35679999999999999999999999999997664 12445558899999999999999999999999999973
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|. +.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++...+.
T Consensus 110 --~~--------~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 171 (258)
T 3uq3_A 110 --RT--------ADILTKLRNAEKELKKAEAEAYV--------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171 (258)
T ss_dssp --CC--------HHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --ch--------hHHHHHHhHHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc
Confidence 32 45677888999999999999987 8999999999999999999999999999999998655
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.. ......+.++...|++++|...+.+++.. .|....++..+|.+|...|++++|..+|++++++.++
T Consensus 172 ~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 172 DA----RGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239 (258)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChh
Confidence 32 34555677788999999999999999987 6777889999999999999999999999999999966
Q ss_pred hcc
Q psy597 532 REF 534 (546)
Q Consensus 532 ~~~ 534 (546)
...
T Consensus 240 ~~~ 242 (258)
T 3uq3_A 240 VNN 242 (258)
T ss_dssp HHT
T ss_pred hcC
Confidence 543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-23 Score=201.24 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=220.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.++..+..+|..++..|+|++|+.+|+++++..+....... .....+....+...+......+.. ..|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~------~~~~ 88 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP----VHIGTLVELNKANELFYLSHKLVD------LYPS 88 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHH----HHHHHHHHHTCHHHHHHHHHHHHH------HCTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHH----HHHHHHHHhhhHHHHHHHHHHHHH------hCcC
Confidence 444567888999999999999999999999876544332111 111111122222222222222211 2355
Q ss_pred HHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQN-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+.++..+|.++...| ++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----- 155 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----- 155 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----
Confidence 5678999999999999 999999999999976 34446789999999999999999999999999984
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...+
T Consensus 156 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 156 ---KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp ---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 556677888999999999999999999999987 677788999999999999999999999999999876
Q ss_pred hcccC-----cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 451 EREFG-----ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 451 ~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
..... ........+.++...|++++|...|++++.. .|....++..+|.+|...|++++|..+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 53322 1223445667788999999999999999987 5667889999999999999999999999999
Q ss_pred HHHhhhh
Q psy597 526 LTRAHER 532 (546)
Q Consensus 526 l~~~~~~ 532 (546)
+++.|+.
T Consensus 297 l~~~p~~ 303 (330)
T 3hym_B 297 LGLRRDD 303 (330)
T ss_dssp TTTCSCC
T ss_pred HccCCCc
Confidence 9887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=194.62 Aligned_cols=251 Identities=13% Similarity=0.134 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++..|.+++..|++++|+..|+++++. .|....
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------------------------------------------~p~~~~ 38 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--------------------------------------------KYNSPY 38 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------------------------------------------TCCCST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------------------------------------CCCcHH
Confidence 457889999999999999999999999983 344455
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..+|.+|...|++++|+.+|++++... ++......++..+|.++...|++++|+.+|+++++.. |
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~ 105 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------T 105 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------c
Confidence 78999999999999999999999999731 2233347789999999999999999999999999983 6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
....++..+|.++...|++++|+.+|++++++ .|....++.++|......+++++|+..|++++...|...
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~- 176 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY- 176 (272)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch-
Confidence 67789999999999999999999999999987 677788999999555556799999999999999866542
Q ss_pred CcccCCChhhHHHHhhch---hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 455 GACDGDNKPIWQDRQKNK---AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~---~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
......+.++...++ ++.|...|++++........+.......++..+|.+|...|++++|+.+|++++++.|+
T Consensus 177 ---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 177 ---IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp ---HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 233445666777777 88899999999988654322212335678999999999999999999999999999887
Q ss_pred hcc
Q psy597 532 REF 534 (546)
Q Consensus 532 ~~~ 534 (546)
++.
T Consensus 254 ~~~ 256 (272)
T 3u4t_A 254 NKK 256 (272)
T ss_dssp CHH
T ss_pred HHH
Confidence 643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=200.70 Aligned_cols=244 Identities=12% Similarity=0.008 Sum_probs=207.5
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
....|....++..+|.++...|++++|+..|++++.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------------------------------------------- 126 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------------------------------------------- 126 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-------------------------------------------
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------------------------------------------
Confidence 3557999999999999999999999999999999984
Q ss_pred CChhHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNK-YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
.|....+|+.+|.++...|+ +++|+..|++++.+ .|....+|+++|.++...|++++|+.+|++++++
T Consensus 127 -~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-- 195 (382)
T 2h6f_A 127 -NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-- 195 (382)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--
T ss_pred -CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 57778899999999999997 99999999999998 4556889999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHH-----HH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEA-----EI 440 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA-----~~ 440 (546)
+|....+|+++|.++...|++++|+.+|++++++ +|....+|+++|.++.. .|.+++| +.
T Consensus 196 ------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 196 ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred ------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 4888999999999999999999999999999999 89999999999999999 5655888 59
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhc--hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC-----
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKN--KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG----- 513 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g----- 513 (546)
+|++++.+.|.+. ..+...++++...| ++.+|...+.++ . ..|....++..+|.+|..+|
T Consensus 262 ~~~~Al~l~P~~~----~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 262 YTLEMIKLVPHNE----SAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHSTTCH----HHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCH----HHHHHHHHHHHccCccchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhccccc
Confidence 9999999866543 23344455555555 466666655443 2 25667889999999999985
Q ss_pred ---C-HHHHHHHHHHH-HHHhhhh
Q psy597 514 ---K-YKEAEILYKQV-LTRAHER 532 (546)
Q Consensus 514 ---~-~~~A~~~~~~a-l~~~~~~ 532 (546)
+ +++|+.+|+++ +++.|..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 3 58999999998 7766543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=206.67 Aligned_cols=280 Identities=13% Similarity=0.053 Sum_probs=224.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.+..++..+|..|...|++++|+.+|+++++..+.... +.......+....+...+......... ..|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~ 371 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD----VYPLHLASLHESGEKNKLYLISNDLVD------RHPE 371 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT----THHHHHHHHHHHTCHHHHHHHHHHHHH------HCTT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHhCCHHHHHHHHHHHHh------hCcc
Confidence 678899999999999999999999999999976443221 111111112222222222222222211 2355
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.+|...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++...
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 437 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------ 437 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 6778999999999999999999999999987 34446789999999999999999999999999773
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.+|...|++++|+.+|+++++. .|....++..+|.+|...|++++|+.+|++++...+.
T Consensus 438 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 438 --QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp --TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 666788999999999999999999999999988 5666788999999999999999999999999998765
Q ss_pred cccCc---ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 452 REFGA---CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 452 ~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+... .......+..+...|++++|...|++++.. .|....++..+|.+|...|++++|..+|++++++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 32221 234556777799999999999999999987 5666789999999999999999999999999999
Q ss_pred hhhhc
Q psy597 529 AHERE 533 (546)
Q Consensus 529 ~~~~~ 533 (546)
.|++.
T Consensus 580 ~p~~~ 584 (597)
T 2xpi_A 580 SPNEI 584 (597)
T ss_dssp CTTCH
T ss_pred CCCCh
Confidence 87653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-20 Score=180.11 Aligned_cols=218 Identities=54% Similarity=0.772 Sum_probs=196.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+.++|..+.++..+|.++...|++++|+.+|++++.+.....+++.+....++..+|.+|...|++++|+.+|++++.+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999999888767889999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
++..+++++....++.++|.++...|++++|+.+|++++++.....+++++....++.++|.+|...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988888999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
+... ....+++++....++..+|.+|...|++++|+.+++++
T Consensus 180 ~~~~--------------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 180 LEIY--------------------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHH--------------------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH--------------------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8752 23334457888899999999999999999999999999
Q ss_pred HHHhhhhccCCCCCCC
Q psy597 526 LTRAHEREFGACDGDN 541 (546)
Q Consensus 526 l~~~~~~~~~~~~~~~ 541 (546)
++..++..++...+..
T Consensus 222 l~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 222 LTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHhcCCCCCcch
Confidence 9999887766554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=197.37 Aligned_cols=269 Identities=13% Similarity=0.039 Sum_probs=209.1
Q ss_pred hhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHH
Q psy597 198 PSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277 (546)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 277 (546)
..+...+.......|..+.+++.+|.+|...|++++|+..|+++++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------------- 128 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------------------------------- 128 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------------
Confidence 34444455555556788899999999999999999999999999984
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHcCCHHHHH
Q psy597 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA--AVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 278 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~--~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.|....++..+|.+|...|++++|+.+|++++.+.+........ .....+..+|.++...|++++|+
T Consensus 129 -----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 129 -----------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp -----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 35557789999999999999999999999999985443111000 12344556799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 356 PLCKRALEIREKVLGKEHPD--VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
.+|++++... |. ...++.++|.++...|++++|+.+|++++++ .|....++.++|.+|...|
T Consensus 198 ~~~~~al~~~--------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 198 ELYLEAAHQN--------GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp HHHHHHHHHS--------CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC--------cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcC
Confidence 9999999984 55 6778999999999999999999999999998 7777889999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHH
Q psy597 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS----NVAKTKNNLASCY 509 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~----~~~~~~~~La~~y 509 (546)
++++|+.+|++++...|.. .......+.++...|++.+|...|.+++.+.....++.++ ....++..++.++
T Consensus 262 ~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGF----IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 9999999999999986543 2345567777999999999999999999986543332111 1367889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhh
Q psy597 510 LKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~~~ 530 (546)
...|+.+.|..+..+.+..+.
T Consensus 338 ~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 338 SLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHTCHHHHHHHHTTCCGGGT
T ss_pred HHcCcHHHHHHHHHhhHHHHH
Confidence 999999999988888666553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=193.84 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
...++.+|.++...|++++|+.+|+++++ ..|....
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------------------------------------~~p~~~~ 99 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--------------------------------------------QDPKHME 99 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------------SCTTCHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------------------hCCCCHH
Confidence 45688999999999999999999999998 3466678
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..+|.++...|++++|+.+|++++.+. |....++..+|.++...|++++|+.+|++++... |
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~ 163 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--------P 163 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------T
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c
Confidence 89999999999999999999999999883 4457789999999999999999999999999874 2
Q ss_pred HHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHH
Q psy597 375 DVAKQL----------------NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 375 ~~~~~~----------------~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~ 436 (546)
.....+ ..++.++ ..|++++|+.+|++++.+ .|. .+.++.++|.+|...|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHH
Confidence 222222 2567776 999999999999999998 666 6789999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHH
Q psy597 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 516 (546)
Q Consensus 437 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 516 (546)
+|+.+|++++...+... ......+.++...|++++|...|.+++.+ .|....++..+|.+|...|+++
T Consensus 235 ~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 235 KAVDCFTAALSVRPNDY----LLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCcCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999865432 34556677789999999999999999987 6777889999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy597 517 EAEILYKQVLTRAHER 532 (546)
Q Consensus 517 ~A~~~~~~al~~~~~~ 532 (546)
+|+.+|++++++.|..
T Consensus 303 ~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 303 EAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999998865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=191.81 Aligned_cols=214 Identities=19% Similarity=0.082 Sum_probs=183.0
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 368 (546)
|....++..++.++...|++++|+.++.+++.. .|....++..+|.++...| ++++|+.+|++++..
T Consensus 53 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~---- 120 (330)
T 3hym_B 53 PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL---- 120 (330)
T ss_dssp TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----
T ss_pred CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence 444556778889999999999999999999987 3444678999999999999 999999999999987
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++..
T Consensus 121 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 121 ----EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp ----CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3667788999999999999999999999999998 6666677888999999999999999999999998
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD-SNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~-~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
.+... ......+.++...|++++|...+.+++........... +....++..+|.+|...|++++|+.+|+++++
T Consensus 189 ~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 189 APEDP----FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCh----HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 65532 34556677789999999999999999988654432211 45567899999999999999999999999999
Q ss_pred Hhhh
Q psy597 528 RAHE 531 (546)
Q Consensus 528 ~~~~ 531 (546)
..|.
T Consensus 265 ~~~~ 268 (330)
T 3hym_B 265 LIPQ 268 (330)
T ss_dssp HSTT
T ss_pred hCcc
Confidence 8765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=198.42 Aligned_cols=241 Identities=19% Similarity=0.147 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+.++..+|.++...|++++|+..|++++.. .|. ..
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------------------------------------------~~~-~~ 277 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--------------------------------------------HPT-PN 277 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CCC-HH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------------------------------------------CCC-ch
Confidence 567999999999999999999999999984 233 67
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+|++++... |
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~ 341 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN--------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------P 341 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------C
Confidence 89999999999999999999999999873 4446789999999999999999999999999983 6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++...+....
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 66788999999999999999999999999998 6777788999999999999999999999999998876543
Q ss_pred CcccC--CChhhHHHHhh----------chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 455 GACDG--DNKPIWQDRQK----------NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 455 ~~~~~--~~~~~~~~~~~----------~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
..... ....+.++... |++++|...|.+++.. .|....++..+|.+|...|++++|+.+|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 32221 12334557777 9999999999999987 6777789999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy597 523 KQVLTRAHER 532 (546)
Q Consensus 523 ~~al~~~~~~ 532 (546)
++++++.|..
T Consensus 486 ~~al~~~~~~ 495 (537)
T 3fp2_A 486 EDSAILARTM 495 (537)
T ss_dssp HHHHHHC--C
T ss_pred HHHHHhCCCc
Confidence 9999988754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-20 Score=174.75 Aligned_cols=205 Identities=41% Similarity=0.529 Sum_probs=188.3
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
+.++|..+.++..+|.+|...|++++|+.+|.++++...... +.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------~~ 79 (283)
T 3edt_B 36 GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL------------------------------------GK 79 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------------------------------CT
T ss_pred CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc------------------------------------CC
Confidence 346799999999999999999999999999999999877765 45
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+.++..+|.+|...|++++|+.+|.+++.+.+...++++|....++.++|.+|...|++++|+.+|++++.+.+.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------------------------------------
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL------------------------------------ 411 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~------------------------------------ 411 (546)
..++++|....++.++|.++...|++++|+.+|++++.+.....
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 98888999999999999999999999999999999999855421
Q ss_pred -----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 412 -----GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 412 -----~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+.++|....++..+|.+|..+|++++|+.+|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1256888899999999999999999999999999874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=195.79 Aligned_cols=271 Identities=16% Similarity=0.141 Sum_probs=217.3
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...+...+.......|..+.++..+|.++...|++++|+..|+++++.
T Consensus 80 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------- 127 (368)
T 1fch_A 80 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-------------------------------- 127 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------------------------------
Confidence 344555555666667888899999999999999999999999999984
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHHHc
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH--------AAVAATLNNLAVLYGKR 348 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~--------~~~~~~~~~la~~~~~~ 348 (546)
.|....++..+|.+|...|++++|+..|++++...+....... ......+..++.++ ..
T Consensus 128 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 128 ------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc
Confidence 3455678999999999999999999999999987432100000 00011222567776 99
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 349 GKYKEAEPLCKRALEIREKVLGKEHPD--VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 349 g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
|++++|+.+|++++... |. ...++.++|.++...|++++|+.+|++++.+ .|....++.++|
T Consensus 195 ~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~ 258 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLD--------PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLG 258 (368)
T ss_dssp HHHHHHHHHHHHHHHHS--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHH
Confidence 99999999999999884 55 6788999999999999999999999999998 677788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCC---CCHHHHHHHH
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP---DDSNVAKTKN 503 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~~ 503 (546)
.++...|++++|+.+|++++...+... ......+.++...|++.+|...|.+++.+.....++ ..+....++.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYI----RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 999999999999999999999865432 345567777999999999999999999885432110 1122378899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 504 NLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+|.+|...|++++|..+++++++.+++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 99999999999999999999999987643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=185.32 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
++..++.+|..++..|+|++|+..|+++++. .|..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------------------------------------------~p~~~ 37 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------------------------------------------DPDNY 37 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------CcccH
Confidence 4678999999999999999999999999984 34556
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------- 101 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------- 101 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------
Confidence 78999999999999999999999999988 34446789999999999999999999999999873
Q ss_pred h---HHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 374 P---DVAKQLNNL------------ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 374 ~---~~~~~~~~l------------a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
| ....++..+ |.++...|++++|+.+|+++++. .|....++..+|.++...|++++|
T Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHH
Confidence 5 566666655 79999999999999999999998 677788999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHH---------HHHHHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT---------KNNLASCY 509 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~---------~~~La~~y 509 (546)
+..+++++...+... ......+.++...|+++.|...+.+++... ++.+..... ...+|.++
T Consensus 174 ~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 174 ISDLKAASKLKSDNT----EAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHHHHHHHTTCSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998755432 334566677889999999999999999761 223332222 23558899
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhh
Q psy597 510 LKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|++++|+.+++++++..|..
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~ 267 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSV 267 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999987653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-20 Score=186.34 Aligned_cols=273 Identities=17% Similarity=0.198 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHH
Q psy597 231 YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310 (546)
Q Consensus 231 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (546)
...+..++..+.... ..++++.|...+..++... ..+....+.++..+|.+|...|+++
T Consensus 45 ~~~~~~l~~~g~~~~--~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~lg~~~~~~g~~~ 103 (411)
T 4a1s_A 45 SSMCLELALEGERLC--NAGDCRAGVAFFQAAIQAG-------------------TEDLRTLSAIYSQLGNAYFYLGDYN 103 (411)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHC-------------------CSCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHhc-------------------ccChhHHHHHHHHHHHHHHHCCCHH
Confidence 445555554443322 2356666666666655432 2233445678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 390 (546)
+|+.+|++++.+.+.. ++.+....++..+|.+|...|++++|+.+|++++.+.... .+++....++.++|.+|...
T Consensus 104 ~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 104 KAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHc
Confidence 9999999999998887 6778889999999999999999999999999999998776 55688899999999999999
Q ss_pred CC-----------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 391 SK-----------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 391 g~-----------------~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|+ +++|+.+|++++++.... ++.+....++.++|.+|...|++++|+.+|++++.+.+...
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 99 999999999999998777 45678888999999999999999999999999999887643
Q ss_pred c--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 454 F--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 454 ~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
. .........+.++...|++++|...|++++.+.... .+......++..+|.+|...|++++|+.++++++.+.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 111245566777999999999999999999997765 335566889999999999999999999999999999876
Q ss_pred h
Q psy597 532 R 532 (546)
Q Consensus 532 ~ 532 (546)
.
T Consensus 336 ~ 336 (411)
T 4a1s_A 336 L 336 (411)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=182.82 Aligned_cols=302 Identities=13% Similarity=0.041 Sum_probs=228.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhH----H--HHHhhhhhhH-----------HHHH
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE----D--CALRSRKESY-----------DIVK 274 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~----~--~~l~~~~~~~-----------~~~~ 274 (546)
+..+....+-...+...+++++|..+++++.+..+....+.+...-+. + .......... ....
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 456677777778889999999999999999887766543333221111 0 0111111111 1111
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
..... .. ..+.......++.+|.++...|++++|+.+|++++.+.+.. ++.+..+.++..+|.+|...|++++|
T Consensus 89 ~i~~~---~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A 162 (383)
T 3ulq_A 89 EIDKK---QA-RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFS 162 (383)
T ss_dssp HHHHH---TH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhc---CC-CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 11110 00 00111223356669999999999999999999999987776 66777899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
+.++.+++++.++. +...+..+.++.++|.+|...|++++|+.+|++++++.... ++.+..+.++.++|.+|..+|+
T Consensus 163 ~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 163 MDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCC
Confidence 99999999998765 12257788999999999999999999999999999998877 5577888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcc--cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 435 YKEAEILYKQVLTRAHERE--FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
+++|+.+|++++.+..... ..........+.++...|+++.|..++.+++.+..... ++.....+..+|.+|...
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---DVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCC
Confidence 9999999999999866532 22234456677779999999999999999999987662 355555578899999999
Q ss_pred CC---HHHHHHHHHHH
Q psy597 513 GK---YKEAEILYKQV 525 (546)
Q Consensus 513 g~---~~~A~~~~~~a 525 (546)
|+ +++|+.++++.
T Consensus 317 ~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK 332 (383)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHC
Confidence 99 66666665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=190.66 Aligned_cols=280 Identities=13% Similarity=0.063 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
...++.+|..+...|++++|+.+|+++++..+... .+............+...+......+.. ..|....
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~ 90 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE----EAWRSLGLTQAENEKDGLAIIALNHARM------LDPKDIA 90 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCcCCHH
Confidence 34566667777777777777777777666433211 1111111111122222222222222221 1345567
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------------HH-HHHHcCCHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL--------------AV-LYGKRGKYKEAEPLCK 359 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~ 359 (546)
++..+|.++...|++++|+..|++++...+.. ...+..+ +. ++...|++++|+.+++
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQY--------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--------TTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc--------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 89999999999999999999999999874222 2223333 55 5888999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+++... |....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+
T Consensus 163 ~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 163 AALEMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp HHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 999884 667889999999999999999999999999998 6777889999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHcCCH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD----DSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~----~~~~~~~~~~La~~y~~~g~~ 515 (546)
.+|++++...+... ......+.++...|+++.|...+++++.......... ......++..+|.++...|++
T Consensus 227 ~~~~~a~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 227 DAYNRALDINPGYV----RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 99999999865432 2345667778999999999999999998732211100 001688999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 516 KEAEILYKQVLTRAHER 532 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~~ 532 (546)
++|..+++++++..++.
T Consensus 303 ~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 303 DLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcchh
Confidence 99999999999988765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=176.87 Aligned_cols=237 Identities=19% Similarity=0.209 Sum_probs=206.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+..+.++..+|.++...|++++|+.++++++.+.+.. ++.+..+.++..+|.++...|++++|+.++.+++.+...
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 38 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344457889999999999999999999999999998887 777888999999999999999999999999999999877
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSK--------------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
. ++.+....++..+|.++...|+ +++|+.++++++.+.... ++.+....++.++|.
T Consensus 116 ~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~ 191 (338)
T 3ro2_A 116 L--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGN 191 (338)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred h--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Confidence 6 4456678899999999999999 999999999999998776 456778889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhccc--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVLTRAHEREF--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
+|...|++++|+.++++++...+.... .........+..+...|++++|...+.+++.+.... .+.+....++..+
T Consensus 192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 269 (338)
T 3ro2_A 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHH
Confidence 999999999999999999998776432 112244556677889999999999999999987765 3356668899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 506 ASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 506 a~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
|.+|...|++++|..++++++.+.+..
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=186.82 Aligned_cols=207 Identities=19% Similarity=0.153 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 119 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ---- 119 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 556778899999999999999999999999987 34447789999999999999999999999999874
Q ss_pred CCCChHHHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 370 GKEHPDVAKQLNNL--------------AL-LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 370 ~~~~~~~~~~~~~l--------------a~-~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
|.....+..+ +. ++...|++++|+.+++++++. .|....++..+|.+|...|+
T Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~ 187 (327)
T 3cv0_A 120 ----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNN 187 (327)
T ss_dssp ----TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTC
T ss_pred ----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcc
Confidence 3333333333 55 688899999999999999998 67778899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
+++|+.++++++...+... ......+.++...|++++|...+.+++.. .|....++..+|.+|...|+
T Consensus 188 ~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDDA----QLWNKLGATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcc
Confidence 9999999999998865432 33456677788999999999999999987 56677889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy597 515 YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~ 532 (546)
+++|+.+|++++...|..
T Consensus 256 ~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 999999999999998773
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=175.86 Aligned_cols=208 Identities=18% Similarity=0.206 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
...+..++.+|.++...|++++|+.+|+++++ ..|.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--------------------------------------------~~~~ 55 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--------------------------------------------ENKE 55 (243)
T ss_dssp ----------------------CCTTHHHHHT--------------------------------------------TCTT
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--------------------------------------------hCcc
Confidence 34567899999999999999999999999987 3455
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 121 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD--------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------ 121 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------
Confidence 57889999999999999999999999999873 3447789999999999999999999999999884
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 122 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 188 (243)
T 2q7f_A 122 --MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--- 188 (243)
T ss_dssp --CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---
T ss_pred --CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 555778999999999999999999999999998 6667788999999999999999999999998875
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.|....++..+|.+|...|++++|..+|++++++.|+
T Consensus 189 -------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 189 -------------------------------------------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred -------------------------------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 3334557788899999999999999999999888766
Q ss_pred hc
Q psy597 532 RE 533 (546)
Q Consensus 532 ~~ 533 (546)
..
T Consensus 226 ~~ 227 (243)
T 2q7f_A 226 HM 227 (243)
T ss_dssp CH
T ss_pred hH
Confidence 53
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-20 Score=192.10 Aligned_cols=194 Identities=13% Similarity=0.168 Sum_probs=164.3
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 382 (546)
|++++|+..|++++... ++++. .+.++..+|.++...|++++|+.+|++++... |. ..++..
T Consensus 216 ~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--------~~-~~~~~~ 281 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--------PT-PNSYIF 281 (537)
T ss_dssp HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CC-chHHHH
Confidence 45666666666665543 33332 36689999999999999999999999999983 55 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCCh
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 462 (546)
+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+..|++++...+... .....
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~ 349 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQ 349 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHH
Confidence 999999999999999999999998 777788999999999999999999999999999865532 34556
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 463 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
.+.++...|++++|...+.+++.. .|....++..+|.+|...|++++|+.+|+++++..|....
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 677789999999999999999987 5666788999999999999999999999999999876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.1e-20 Score=172.05 Aligned_cols=212 Identities=19% Similarity=0.166 Sum_probs=185.7
Q ss_pred CchHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 210 EIPAR-LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 210 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
.+|.. +.+++.+|.++...|++++|+.+|+++++.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------------------------------------------- 66 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI-------------------------------------------- 66 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------------------------------------
Confidence 34655 899999999999999999999999999984
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+|++++.
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----- 133 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ----- 133 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----
Confidence 34456789999999999999999999999999873 33467899999999999999999999999987
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.++++++..
T Consensus 134 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 134 -DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1335788899999999999999999999999999998 6666788999999999999999999999998875
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.|....++..++.++...|++++|..+++++++.
T Consensus 205 ----------------------------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 205 ----------------------------------------------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ----------------------------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2334556788999999999999999999999998
Q ss_pred hhhhc
Q psy597 529 AHERE 533 (546)
Q Consensus 529 ~~~~~ 533 (546)
.|+.+
T Consensus 239 ~p~~~ 243 (252)
T 2ho1_A 239 YPGSL 243 (252)
T ss_dssp CTTSH
T ss_pred CCCCH
Confidence 87653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=197.02 Aligned_cols=245 Identities=17% Similarity=0.125 Sum_probs=215.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|..+.+++.+|.++...|++++|+.+|+++++. .|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------------------------------------~~~ 269 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------------------------------------------FPR 269 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------------------------------------------CCC
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------------------------------------------Ccc
Confidence 888999999999999999999999999999984 233
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
..++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 270 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 334 (514)
T 2gw1_A 270 -VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD------ 334 (514)
T ss_dssp -HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC------
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence 888999999999999999999999999876 34446689999999999999999999999999873
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++...+.
T Consensus 335 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 335 --PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp --SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 556778999999999999999999999999988 6666788999999999999999999999999998776
Q ss_pred cccCc--ccCCChhhHHHHh---hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 452 REFGA--CDGDNKPIWQDRQ---KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 452 ~~~~~--~~~~~~~~~~~~~---~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
..... .......+.++.. .|+++.|...|.+++.. .|....++..+|.+|...|++++|..+|++++
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 53221 1245566777888 99999999999999987 66677899999999999999999999999999
Q ss_pred HHhhhhc
Q psy597 527 TRAHERE 533 (546)
Q Consensus 527 ~~~~~~~ 533 (546)
++.|+.+
T Consensus 477 ~~~~~~~ 483 (514)
T 2gw1_A 477 DLARTME 483 (514)
T ss_dssp HHCSSHH
T ss_pred HhccccH
Confidence 9887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-20 Score=164.26 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.+|+.+|.+|...|++++|+..|++++++ +|....++..+|.+|...|++++|+..+.+++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------ 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 4678999999999999999999999999988 45557899999999999999999999999999883
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...++++.|...+.+++.+ .|....++..+|.+|..+|++++|+..|+++++.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 677888999999999999999999999999998 7888889999999999999999999999999886
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+|....++.++|.+|..+|++++|+.+|++|+++.|.
T Consensus 137 -------------------------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 137 -------------------------------------------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred -------------------------------------------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 5666788999999999999999999999999999887
Q ss_pred hc
Q psy597 532 RE 533 (546)
Q Consensus 532 ~~ 533 (546)
+.
T Consensus 174 ~a 175 (184)
T 3vtx_A 174 KA 175 (184)
T ss_dssp HH
T ss_pred CH
Confidence 63
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=190.87 Aligned_cols=286 Identities=12% Similarity=0.061 Sum_probs=221.2
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh-----------h-----HHHHHhh--------
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET-----------L-----EDCALRS-------- 265 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~-----------~-----~~~~l~~-------- 265 (546)
..|.++.+++.+|.+|...|++++|+..|+++++..+.....+..... . +......
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 347789999999999999999999999999998864332210000000 0 0000000
Q ss_pred ----hhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy597 266 ----RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL 341 (546)
Q Consensus 266 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~l 341 (546)
............+...+..... .+....++..+|.+|...|++++|+.+|++++... |....++..+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l 345 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSING-LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--------PYNLDVYPLH 345 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTT-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCCTTHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--------cccHHHHHHH
Confidence 0000001111122222332222 25667889999999999999999999999999763 3345678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 421 (546)
+.++...|++++|...+.+++.. .|....++..+|.+|...|++++|+.+|++++++ .|....+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ 409 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPA 409 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHH
Confidence 99999999999999999999976 3777889999999999999999999999999998 7777889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q psy597 422 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT 501 (546)
Q Consensus 422 ~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 501 (546)
+..+|.+|...|++++|+.+|++++...+.+ .......+..+...|++++|...|.+++.. .|....+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ 477 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGT----HLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLL 477 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHH
Confidence 9999999999999999999999999875542 233455667788999999999999999976 4556678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 502 KNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 502 ~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
+..+|.+|...|++++|+.+|+++++..++.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999997654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=175.52 Aligned_cols=196 Identities=12% Similarity=0.015 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
..-...+...|.+|...|+|++|+..|.+++++.+..+ +.+.
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~ 75 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--------------------------------------NEDE 75 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------------------------------------CHHH
Confidence 34456677788999999999999999999999877654 5567
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+.++..+|.+|...|++++|+.+|++++.+.+.. ++....+.++.++|.+|... |++++|+.+|++++++....
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-- 151 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-- 151 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--
Confidence 78899999999999999999999999999999876 56666788999999999996 99999999999999998543
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD-SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~-~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
++......++.++|.++..+|++++|+.+|++++++.... +.. .....++.++|.++..+|++++|+.+|++++.+.
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2223446789999999999999999999999999873111 000 1344578999999999999999999999999876
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
|.
T Consensus 230 p~ 231 (292)
T 1qqe_A 230 PN 231 (292)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-19 Score=175.71 Aligned_cols=276 Identities=11% Similarity=-0.001 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
...++..+|.++...|++++|...+.+++...+..+ +.....
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~~~ 93 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--------------------------------------VWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--------------------------------------cHHHHH
Confidence 456788899999999999999999999998877644 445567
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+|.++...|++++|+.++++++.+.+...+..++....++.++|.++...|++++|..++++++.+.... .+
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 170 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QP 170 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---Cc
Confidence 788999999999999999999999999999887444457788899999999999999999999999999986432 12
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA--KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~--~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+....++.++|.++...|++++|..++++++.+.... + .+... .....++.++...|++++|..++++++...+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--K-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--C-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence 3356788999999999999999999999999885432 1 22122 22234566788999999999999998865432
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
............+..+...|++.+|...+.+++...... +..+....++..+|.++...|++++|..++++++.+.+.
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 111100112344556888899999999999999887653 223345568899999999999999999999999999887
Q ss_pred hccC
Q psy597 532 REFG 535 (546)
Q Consensus 532 ~~~~ 535 (546)
.++.
T Consensus 326 ~g~~ 329 (373)
T 1hz4_A 326 TGFI 329 (373)
T ss_dssp HCCC
T ss_pred ccHH
Confidence 5543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=185.20 Aligned_cols=287 Identities=17% Similarity=0.100 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChhhH
Q psy597 122 ANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQF 201 (546)
Q Consensus 122 a~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 201 (546)
+.++..|+..+...+++++++++++-...+.+-...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-------------------------------------------- 86 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-------------------------------------------- 86 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG--------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc--------------------------------------------
Confidence 556777788888888888888877665555322111
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy597 202 AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQI 281 (546)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 281 (546)
...+|..+.++.++|.+|...|++++|+.+|++++++.+...
T Consensus 87 ------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~-------------------------------- 128 (472)
T 4g1t_A 87 ------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS-------------------------------- 128 (472)
T ss_dssp ------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--------------------------------
T ss_pred ------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc--------------------------------
Confidence 011244567899999999999999999999999999988766
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHHcCCHHHHHH
Q psy597 282 LGSGGHDHPDVATMLNILALVYRDQ--NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL---YGKRGKYKEAEP 356 (546)
Q Consensus 282 l~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~---~~~~g~~~~A~~ 356 (546)
...++..+.++..+|.++... ++|++|+.+|++++.+. |..+.++..+|.+ +...+++++|+.
T Consensus 129 ----~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--------p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 129 ----SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--------PKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp ----CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred ----cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 445566777888888877665 57999999999999883 3334556666665 445678889999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
.|++++++ +|....++.++|..+.. .|++++|+.+|++++.+ +|....++.++|.+|...
T Consensus 197 ~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 197 PLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHT
T ss_pred HHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHc
Confidence 99999988 36666777777766554 56788999999999988 778888899999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh-------------------hchhhHHHHHHHHHHHHHHHHcCC
Q psy597 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ-------------------KNKAKNREKYYQRALEIYELKLGP 493 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~A~~~~~~Al~~~~~~~~~ 493 (546)
|++++|+..|++++...|.... ....++.++.. ...+..|...+.+++..
T Consensus 261 ~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------- 329 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPNNAY----LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA------- 329 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CchHHHHHHHHHHHHhCCChHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 9999999999999988665321 12222322221 22344455555555544
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 494 ~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.|....++..+|.+|...|++++|+.+|++++++.+
T Consensus 330 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 330 -NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp -CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred -CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 566667788888888888888888888888887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-19 Score=164.87 Aligned_cols=212 Identities=17% Similarity=0.153 Sum_probs=181.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|..+.++..+|.++...|++++|+.+|+++++. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------------------------------------~ 38 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------------------------------------------D 38 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------C
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------------------------------------------C
Confidence 45788999999999999999999999999999984 3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 368 (546)
|....++..+|.++...|++++|+.+|++++... |....++..+|.++... |++++|+.++++++. .
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~--- 106 (225)
T 2vq2_A 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D--- 106 (225)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S---
T ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C---
Confidence 4446789999999999999999999999999873 33467889999999999 999999999999987 1
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+..|....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 107 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 107 --PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp --TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345777889999999999999999999999999998 6667788999999999999999999999999876
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+. .....+..++.++...|++++|..+++.+...
T Consensus 177 ~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 177 VEV---------------------------------------------LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HCS---------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC---------------------------------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 320 22344567788888999999999999988887
Q ss_pred hhhh
Q psy597 529 AHER 532 (546)
Q Consensus 529 ~~~~ 532 (546)
.|+.
T Consensus 212 ~p~~ 215 (225)
T 2vq2_A 212 FPYS 215 (225)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=171.85 Aligned_cols=229 Identities=15% Similarity=0.143 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.++.+++.+|.+|...|++++|+.+|+++++ +.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------------------------------~~ 36 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD----------------------------------------------LK 36 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------------------TT
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------------------------------------CC
Confidence 56778999999999999999999999999987 12
Q ss_pred HHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALE 363 (546)
Q Consensus 292 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 363 (546)
.+.+++.+|.+|.. .+++++|+.+|+++++. . ...+++.+|.+|.. .+++++|+.+|+++++
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 24678999999999 99999999999999876 2 26789999999999 9999999999999987
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKY 435 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~ 435 (546)
. ....++.++|.+|.. .+++++|+.+|+++++. . ...++.++|.+|.. .+++
T Consensus 107 ~----------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 107 L----------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--------N--DGDGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp T----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred c----------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--------C--cHHHHHHHHHHHHcCCCCCCCH
Confidence 5 146788999999999 99999999999999986 2 34678899999999 9999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++|+.+|++++.... ......++.++.. .+++++|..+|+++++. .+ ..++..+|.+|..
T Consensus 167 ~~A~~~~~~a~~~~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 167 KKALASYDKACDLKD------SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHc
Confidence 999999999997621 2334556777888 89999999999999875 22 5688999999999
Q ss_pred ----cCCHHHHHHHHHHHHHHhhhh
Q psy597 512 ----QGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 512 ----~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+++++|+.+|+++++..|..
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=180.90 Aligned_cols=359 Identities=14% Similarity=0.099 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChh
Q psy597 120 ELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPS 199 (546)
Q Consensus 120 ~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 199 (546)
+.+.....++......+++++++..++-+..+. ++ .. ....+...+-. ......
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~----~~----------~~~~la~~~~~---------~g~~~~ 57 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK---ED----PV----------FYSNLSACYVS---------VGDLKK 57 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CC----HH----------HHHHHHHHHHH---------HTCHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cc----HH----------HHHhHHHHHHH---------HhhHHH
Confidence 345556667777777788888877665554443 11 00 00001111000 011233
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHH--hhhhhhHH------
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL--RSRKESYD------ 271 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l--~~~~~~~~------ 271 (546)
+...+.......|..+.++..+|.+|...|++++|+..|++++...+................. ........
T Consensus 58 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444557777889999999999999999999999888764422221111111110000 00000000
Q ss_pred -----------------------HHHHHHHHHHhccC----CCCChhHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHH
Q psy597 272 -----------------------IVKQAKVAQILGSG----GHDHPDVATMLNILALVYRD---QNKYKEAANLLNDALT 321 (546)
Q Consensus 272 -----------------------~~~~~~~~~~l~~~----~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~ 321 (546)
..........+... .-..|....++..+|.++.. .|++++|+.+|++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 00000000000000 00124558888999998887 8999999999999999
Q ss_pred HHHHhc--CCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 322 IREKTL--GENH----AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395 (546)
Q Consensus 322 ~~~~~~--g~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~e 395 (546)
.++... .+++ |....++..+|.++...|++++|+.+|++++... |. ..++..+|.++...|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~-~~~~~~l~~~~~~~~~~~~ 288 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--------PR-VNSYIYMALIMADRNDSTE 288 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHTSSCCTT
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------cc-HHHHHHHHHHHHHCCCHHH
Confidence 654443 2222 6778999999999999999999999999999883 55 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhH
Q psy597 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN 475 (546)
Q Consensus 396 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (546)
|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++...+... ......+..+...|+++.
T Consensus 289 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 289 YYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAYRENKFDD 356 (514)
T ss_dssp GGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTTTTTCHHH
T ss_pred HHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHHcCCHHH
Confidence 99999999987 666777899999999999999999999999998755432 334456666888999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 476 A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
|...+.+++.. .|....++..+|.+|...|++++|+.+|++++...|..+
T Consensus 357 A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 357 CETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 99999999977 566677899999999999999999999999999887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=162.29 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
+++.+|+.+|.+|...|+|++|+..|+++++. +|..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p~~ 38 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------------------------------------------DPNN 38 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------CTTC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------CCCC
Confidence 34678999999999999999999999999984 4666
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.++..+|.+|...|++++|+..+.+++.. .|....++..+|.++...++++.|...+.+++.+
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------- 102 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVL--------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-------- 102 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 788999999999999999999999999987 3444778899999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.|....++..+|.++...|++++|+.+|++++++ +|..+.++.++|.+|..+|++++|+.+|++++++.|++
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 103 NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 3777889999999999999999999999999999 88889999999999999999999999999999987653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=173.84 Aligned_cols=272 Identities=12% Similarity=0.076 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
....++..+|.++...|++++|+.++++++...+ ..+....
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------~~~~~~~ 52 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---------------------------------------PGWFYSR 52 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---------------------------------------TTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---------------------------------------CCchhHH
Confidence 4467788899999999999999999999988532 1122335
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..++..+|.++...|++++|..++.+++.+.+.. ++......++.++|.++...|++++|+.++++++.+.....+..
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 130 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 6688999999999999999999999999998876 55556677899999999999999999999999999998775555
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....++.++|.++...|++++|+.++++++.+.... .++....++.++|.++...|++++|..++++++.+.+..
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 57888999999999999999999999999999985443 122356789999999999999999999999999876543
Q ss_pred ccCcc-cCCC--hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 453 EFGAC-DGDN--KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 453 ~~~~~-~~~~--~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
..... .... ..+..+...|+++.|...+.+++... ..........+..+|.++...|++++|...+++++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22100 0000 12233667888888888888776431 11112223467889999999999999999999999987
Q ss_pred hhh
Q psy597 530 HER 532 (546)
Q Consensus 530 ~~~ 532 (546)
+..
T Consensus 284 ~~~ 286 (373)
T 1hz4_A 284 RSL 286 (373)
T ss_dssp HHT
T ss_pred HhC
Confidence 653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=184.64 Aligned_cols=259 Identities=16% Similarity=0.101 Sum_probs=208.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
++..+..++.+|.++...|++++|+.+|++|+++.+...+ ...++
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-----------------------------------~~~~~ 91 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-----------------------------------DQAEI 91 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-----------------------------------GGCTT
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-----------------------------------cccch
Confidence 4455678899999999999999999999999998776542 22467
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHh
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR--GKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~ 368 (546)
..+.++.++|.+|..+|++++|+.+|++++.+.+...+..++..+.++.++|.++... ++|++|+.+|++++++.
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--- 168 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--- 168 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---
Confidence 7788899999999999999999999999999999887666667788888888877765 47999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLC---QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEIL 441 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~---~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA~~~ 441 (546)
|..+.++..+|.++ ...+++++|+..|++++++ +|....++.++|..+.. .|++++|..+
T Consensus 169 -----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 235 (472)
T 4g1t_A 169 -----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235 (472)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56666777777664 4568889999999999998 77777778888876654 4678899999
Q ss_pred HHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc---------
Q psy597 442 YKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--------- 512 (546)
Q Consensus 442 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~--------- 512 (546)
|++++...+... ......+..+...|++..|...|.+++.. +|....++..+|.+|...
T Consensus 236 ~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 236 VEEALEKAPGVT----DVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp HHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCccHH----HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999998755432 33456777899999999999999999988 788888999999998654
Q ss_pred ----------CCHHHHHHHHHHHHHHhhhh
Q psy597 513 ----------GKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 513 ----------g~~~~A~~~~~~al~~~~~~ 532 (546)
+.+++|+.+|++++...|..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 333 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNL 333 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence 34677888888888876543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=194.09 Aligned_cols=177 Identities=27% Similarity=0.341 Sum_probs=163.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|..+.+++++|.+|..+|++++|+.+|++++++ .|....+++++|.+|...|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 56889999999999999999999999999999998 4556889999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|..+.+++++|.++..+|++++|+.+|++++++ +|..+.+++++|.+|..+|++++|+..|+++++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999999 888999999999999999999999999999998
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
+ .|....++.++|.+|..+|++++|.+.++++++
T Consensus 140 l----------------------------------------------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 140 L----------------------------------------------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp H----------------------------------------------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred h----------------------------------------------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 6 566678899999999999999999999999999
Q ss_pred Hhhhhcc
Q psy597 528 RAHEREF 534 (546)
Q Consensus 528 ~~~~~~~ 534 (546)
+.++..-
T Consensus 174 l~~~~~~ 180 (723)
T 4gyw_A 174 IVADQLE 180 (723)
T ss_dssp HHHHHHH
T ss_pred hChhHHh
Confidence 9887643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-18 Score=172.74 Aligned_cols=301 Identities=12% Similarity=0.004 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHH-------hhhhhhH------HHHHHHHHHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL-------RSRKESY------DIVKQAKVAQ 280 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l-------~~~~~~~------~~~~~~~~~~ 280 (546)
.+....+--..+...+++++|..+++++.........+.... .++.... ....... ..........
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence 344444444455899999999999999877665554332222 1111111 1111111 0001111111
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
.... ..++......++.+|..+...|++++|+.+|++++.+.+.. ++.+..+.++.++|.+|...|+++.|+.++.+
T Consensus 90 ~~~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 90 TPQK-KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp GGGH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCC-CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0000 00122233467889999999999999999999999988776 66788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++++.++..+ ..+..+.++.++|.+|...|++++|+.+|++++++.+.. ++.+..+.++.++|.+|..+|++++|+.
T Consensus 167 al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 167 ALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999876411 134678899999999999999999999999999998776 4566788899999999999999999999
Q ss_pred HHHHHHHhhhhcc-cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC---HH
Q psy597 441 LYKQVLTRAHERE-FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK---YK 516 (546)
Q Consensus 441 ~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~---~~ 516 (546)
+|++++.+..... ..........+.++...|+++.|..++++++.+..... ++.....+..++.+|...|+ +.
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS---HKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC---CSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999766422 11134556677779999999999999999998854432 34444567889999999999 77
Q ss_pred HHHHHHHH
Q psy597 517 EAEILYKQ 524 (546)
Q Consensus 517 ~A~~~~~~ 524 (546)
+|+.++++
T Consensus 321 ~al~~~~~ 328 (378)
T 3q15_A 321 DLLSYFEK 328 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776665
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=193.67 Aligned_cols=174 Identities=25% Similarity=0.330 Sum_probs=162.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|+++.+++++|.+|..+|++++|+.+|++++++ .
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------------------------------------------~ 39 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------------------------F 39 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------C
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------C
Confidence 35899999999999999999999999999999984 4
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|..+.+++++|.+|...|++++|+.+|++++++ .|..+.+++++|.+|..+|++++|+.+|++++++
T Consensus 40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----- 106 (723)
T 4gyw_A 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----- 106 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 667789999999999999999999999999998 4566889999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+|....+++++|.+|..+|++++|+.+|++|+++ +|....++.++|.+|..+|++++|.+.|++++++.
T Consensus 107 ---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 107 ---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 4888999999999999999999999999999999 88889999999999999999999999999999987
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
++
T Consensus 176 ~~ 177 (723)
T 4gyw_A 176 AD 177 (723)
T ss_dssp HH
T ss_pred hh
Confidence 75
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=165.69 Aligned_cols=171 Identities=20% Similarity=0.159 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.+++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------ 68 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR------ 68 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34567899999999999999999999999976 5666889999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQ-----------SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~-----------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
.|....++.++|.++... |++++|+..|++++++ +|....++.++|.+|..+|++++|+
T Consensus 69 --~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 69 --TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Confidence 488889999999999999 9999999999999999 8888899999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
..|++++.+ . ....++.++|.+|...|++++|+
T Consensus 139 ~~~~~al~~----------------------------------------------~-~~~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 139 ASLKQALAL----------------------------------------------E-DTPEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp HHHHHHHHH----------------------------------------------C-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhc----------------------------------------------c-cchHHHHHHHHHHHHcCCHHHHH
Confidence 999999986 2 34567889999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..|++++++.|+.
T Consensus 172 ~~~~~al~~~P~~ 184 (217)
T 2pl2_A 172 AQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHHSTTC
T ss_pred HHHHHHHHhCCCC
Confidence 9999999988765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=184.91 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=219.0
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cCchhHHHhhHHHHHhhh
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-------------SGKYEAAETLEDCALRSR 266 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~a~~~~~~~l~~~ 266 (546)
++..+.......|..+.+++.+|.+|...|++++|+..|+++++..+.. .+.++.|...+..++...
T Consensus 45 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 124 (450)
T 2y4t_A 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3333444444466678888888888888899999998888888763322 256666766666665433
Q ss_pred hhhH---HHHHH-----------------------HHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy597 267 KESY---DIVKQ-----------------------AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDAL 320 (546)
Q Consensus 267 ~~~~---~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (546)
+... ..... ..+...+.......|....++..+|.+|...|++++|+.+|++++
T Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3222 11100 001111111111245567789999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHHHHHHHcC
Q psy597 321 TIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL---------NNLALLCQNQS 391 (546)
Q Consensus 321 ~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g 391 (546)
... |....++..+|.+|...|++++|+.+|++++... ++++.....+ ..+|.++...|
T Consensus 205 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 205 KLK--------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDG 271 (450)
T ss_dssp HHH--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 884 3336789999999999999999999999999773 2233322222 33499999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhh
Q psy597 392 KYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQK 470 (546)
Q Consensus 392 ~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 470 (546)
++++|+.+|++++.+. ++++. ...++..+|.++...|++++|+.++++++...+... ......+.++...
T Consensus 272 ~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 272 RYTDATSKYESVMKTE-----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV----NALKDRAEAYLIE 342 (450)
T ss_dssp CHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHh
Confidence 9999999999999871 22222 356899999999999999999999999998755432 3455677778999
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHHHhhhh
Q psy597 471 NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC------------YLKQG-----KYKEAEILYKQ-VLTRAHER 532 (546)
Q Consensus 471 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~------------y~~~g-----~~~~A~~~~~~-al~~~~~~ 532 (546)
|++++|...|++++.+ .|....++..++.+ |...| +.+++...|++ +++..|+.
T Consensus 343 ~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999976 56667778888844 44455 56777888886 77766655
Q ss_pred c
Q psy597 533 E 533 (546)
Q Consensus 533 ~ 533 (546)
.
T Consensus 415 ~ 415 (450)
T 2y4t_A 415 F 415 (450)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=172.82 Aligned_cols=234 Identities=15% Similarity=0.095 Sum_probs=186.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHH
Q psy597 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY 303 (546)
Q Consensus 224 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 303 (546)
.+...|++++|+..|+++++.. ...+|..+.+++.+|.++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~l~~~~ 53 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASR----------------------------------------ALTDDERAQLLYERGVLY 53 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSS----------------------------------------CCCHHHHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcc----------------------------------------cccCchhHHHHHHHHHHH
Confidence 3445688999999999988731 123577899999999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++... |....++..+
T Consensus 54 ~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l 117 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNR 117 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHH
Confidence 9999999999999999988 34446789999999999999999999999999983 6667899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChh
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 463 (546)
|.++...|++++|+.+|++++++ .|........++ ++...|++++|+..+.+++...+... .....
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~ 183 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQ-----WGWNI 183 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCS-----THHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--------CCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcch-----HHHHH
Confidence 99999999999999999999998 444444444444 44677999999999999998755431 11223
Q ss_pred hHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+..+...++...|...+.+++...... .+....++..+|.+|...|++++|+.+|++++...|.
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccc----cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 334556666777777777776543221 2345789999999999999999999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-18 Score=167.95 Aligned_cols=249 Identities=12% Similarity=0.083 Sum_probs=188.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHh
Q psy597 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ 306 (546)
Q Consensus 227 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~ 306 (546)
..|++++|..+++++.+..+... ....++.......+...|.+|...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~---------------------------------~~~~~~~~~A~~~~~~a~~~~~~~ 49 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF---------------------------------MKWKPDYDSAASEYAKAAVAFKNA 49 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS---------------------------------SSCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHccccc---------------------------------cCCCCCHHHHHHHHHHHHHHHHHc
Confidence 45788999999999887654211 000234455566777888999999
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
|++++|+.+|.+++.+.+.. ++....+.++.++|.+|...|++++|+.+|++++++.... ++....+.++.++|.+
T Consensus 50 g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKL 125 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 99999999999999999887 6667778899999999999999999999999999998654 3344568899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc--ccCCChhh
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA--CDGDNKPI 464 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~--~~~~~~~~ 464 (546)
|.. |++++|+.+|+++++++... ++......++.++|.+|..+|++++|+.+|++++.+.+...... .......+
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 999 99999999999999998764 33445678999999999999999999999999999877643211 11233344
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 465 WQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.++...|++..|..+|++++ +.. .. ........+..++..+ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p-~~--~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIP-GF--SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TST-TS--TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCC-CC--CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45666788888888888887 411 00 0123344566666665 5677665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=186.76 Aligned_cols=205 Identities=15% Similarity=0.062 Sum_probs=182.2
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
.......|..+.+++.+|.++...|+| ++|+.+|+++++.
T Consensus 92 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------------------------------------- 132 (474)
T 4abn_A 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------------------------------------- 132 (474)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------------------------------------
Confidence 334455677889999999999999999 9999999999984
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---------GKYKEA 354 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---------g~~~~A 354 (546)
.|..+.+++.+|.+|...|++++|+.+|++++.+ .|. ..++.++|.++... |++++|
T Consensus 133 -----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A 198 (474)
T 4abn_A 133 -----EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198 (474)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHH
Confidence 4556788999999999999999999999999987 233 48899999999999 999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCh---HHHHHHH
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ--------SKYEEVERYYQRALEIYELKLGPDDS---NVAKTKN 423 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~eA~~~~~~al~~~~~~~~~~~~---~~~~~~~ 423 (546)
+.+|++++++ .|....++.++|.+|... |++++|+.+|++++++ +| ..+.+++
T Consensus 199 ~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 262 (474)
T 4abn_A 199 VRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHL 262 (474)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHH
Confidence 9999999998 477888999999999999 9999999999999999 77 8899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
++|.+|...|++++|+..|++++.+ .|....++.
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~al~l----------------------------------------------~p~~~~a~~ 296 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQAAAL----------------------------------------------DPAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------CTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------CCCCHHHHH
Confidence 9999999999999999999999986 455567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy597 504 NLASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~ 524 (546)
.++.++...|++++|+..+.+
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 888888888988888876544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-17 Score=161.72 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.-...+...|.+|...|+|++|+..|.+++++.+..+ +...
T Consensus 33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~ 74 (307)
T 2ifu_A 33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--------------------------------------SLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--------------------------------------CHHH
Confidence 44556777788999999999999999999999877654 5567
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.++..+|.+|...|++++|+.+|++++.++... ++....+.++.++|.+|.. |++++|+.+|++++.+.+.. +
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~ 149 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--E 149 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--C
Confidence 78899999999999999999999999999998775 5556678899999999999 99999999999999998664 3
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+......++.++|.+|..+|++++|+.+|++++.+.... +..+....++.++|.++..+|++++|+.+|++++ ..|.
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 334567899999999999999999999999999997765 2244556789999999999999999999999999 7554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-18 Score=164.75 Aligned_cols=249 Identities=14% Similarity=0.087 Sum_probs=182.0
Q ss_pred hHHHhhhcCCCchHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPAR-LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
++..........|.. ......++.+|...|+++.|+..++.
T Consensus 18 ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------------------------------------- 59 (291)
T 3mkr_A 18 CINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------------------------------------- 59 (291)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT--------------------------------------
T ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc--------------------------------------
Confidence 344444444555655 45777788889999998888875532
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+....++..++..+...|++++|+..+++++.. ...|....++..+|.++...|++++|+.+|
T Consensus 60 ---------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l 124 (291)
T 3mkr_A 60 ---------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTL 124 (291)
T ss_dssp ---------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 12335677788888888888888888888887753 113444667888888888889998888888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHHHHcCCHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA--SCYLKQGKYK 436 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La--~~y~~~g~~~ 436 (546)
++ |....++..+|.++..+|++++|+..|+++++. +|.........+ .++...|+++
T Consensus 125 ~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 125 HQ-------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp TT-------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred hC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhCchHHH
Confidence 76 233457788888888889999999888888887 333322222222 2333458888
Q ss_pred HHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHH
Q psy597 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 516 (546)
Q Consensus 437 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 516 (546)
+|+..|++++...|.+ .......+.++...|++++|...|++++.. +|..+.++.++|.++...|++.
T Consensus 184 eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCH
Confidence 8998888888875432 234555667788888888888888888887 7888889999999999999997
Q ss_pred H-HHHHHHHHHHHhhhhcc
Q psy597 517 E-AEILYKQVLTRAHEREF 534 (546)
Q Consensus 517 ~-A~~~~~~al~~~~~~~~ 534 (546)
+ +..++++++++.|+.++
T Consensus 252 eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 252 EVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCChH
Confidence 6 57899999999887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=163.67 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|..+..++.+|..++..|+|++|+..|+++++. .+.++
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------------------------------------~p~~~ 49 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----------------------------------------GRTHE 49 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----------------------------------------CSCST
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----------------------------------------CCCCc
Confidence 4566789999999999999999999999999884 34566
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK--------RGKYKEAEPLCKRAL 362 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al 362 (546)
....+++.+|.+|...|++++|+..|++++... ++++....+++.+|.++.. .|++++|+..|++++
T Consensus 50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l 124 (261)
T 3qky_A 50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI 124 (261)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 668999999999999999999999999999985 4566778899999999999 999999999999999
Q ss_pred HHHHHhcCCCChHHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQL--------------NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~--------------~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
... ++++....++ +.+|.+|...|++++|+..|+++++.. |+++....++..+|.+
T Consensus 125 ~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~ 194 (261)
T 3qky_A 125 DRY-----PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRA 194 (261)
T ss_dssp HHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHH
T ss_pred HHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence 985 4444445454 899999999999999999999999872 3445588899999999
Q ss_pred HHHc----------CCHHHHHHHHHHHHHhhh
Q psy597 429 YLKQ----------GKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 429 y~~~----------g~~~eA~~~~~~al~~~~ 450 (546)
|..+ |++++|+..|++++...|
T Consensus 195 ~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 195 YIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 9987 788888888888887643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=176.44 Aligned_cols=235 Identities=9% Similarity=-0.000 Sum_probs=193.4
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 275 (546)
...++.........+|....+|+.+|.++...|+ +++|+.+|++++.+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------------------------------- 161 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------------------------------- 161 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------------------------------
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-------------------------------
Confidence 4455555666667789999999999999999997 99999999999984
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.|....+|+.+|.++...|++++|+..|++++.+ +|....+|+++|.++...|++++|+
T Consensus 162 -------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 162 -------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred -------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHH
Confidence 5667889999999999999999999999999998 4666889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN-QSKYEEV-----ERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~eA-----~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.+|++++++ +|....+|+++|.++.. .|.+++| +.+|++++.+ +|....+++++|.++
T Consensus 221 ~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 221 QYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH
Confidence 999999999 48889999999999999 5665888 5999999999 888899999999999
Q ss_pred HHcC--CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc---------hhhHHHHHHHHH-HHHHHHHcCCCCHH
Q psy597 430 LKQG--KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN---------KAKNREKYYQRA-LEIYELKLGPDDSN 497 (546)
Q Consensus 430 ~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~A-l~~~~~~~~~~~~~ 497 (546)
...| ++++|+..+.++ ...+ ........++.++...+ ..++|+..|.++ +++ +|.
T Consensus 285 ~~~g~~~~~~a~~~~~~~-~~~p----~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~ 351 (382)
T 2h6f_A 285 QDRGLSKYPNLLNQLLDL-QPSH----SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTI 351 (382)
T ss_dssp TTTCGGGCHHHHHHHHHH-TTTC----CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGG
T ss_pred HccCccchHHHHHHHHHh-ccCC----CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------Cch
Confidence 9988 699999988776 3322 11223344555565553 235566666665 444 788
Q ss_pred HHHHHHHHHHHHHHc
Q psy597 498 VAKTKNNLASCYLKQ 512 (546)
Q Consensus 498 ~~~~~~~La~~y~~~ 512 (546)
....|..++..+..+
T Consensus 352 r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 352 RKEYWRYIGRSLQSK 366 (382)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 888999888887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=170.74 Aligned_cols=242 Identities=9% Similarity=0.065 Sum_probs=194.5
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.++..+.......|..+.++..+|.+|...|++++|+..|+++++.
T Consensus 21 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------------------- 66 (272)
T 3u4t_A 21 EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---------------------------------- 66 (272)
T ss_dssp HHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------------------------------
Confidence 3444444444556667778999999999999999999999999872
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+....+.++..+|.++...|++++|+.+|++++... |....++..+|.+|...|++++|+.+|
T Consensus 67 -------~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 67 -------VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp -------SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 22334457789999999999999999999999999973 444678999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC---H
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK---Y 435 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~---~ 435 (546)
+++++. .|....++.++|...+..+++++|+.+|++++++ .|....++..+|.++...|+ +
T Consensus 132 ~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~ 195 (272)
T 3u4t_A 132 EKQIRP--------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQ 195 (272)
T ss_dssp GGGCCS--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHhhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhh
Confidence 999987 3777889999995555567999999999999998 77778899999999999999 9
Q ss_pred HHHHHHHHHHHHhhhhcccC----cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 436 KEAEILYKQVLTRAHEREFG----ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++|+..|++++......+.. .......++..+...|+++.|..+|++++.+ .|....++..++.+...
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcc
Confidence 99999999999987443321 1123445667788899999999999999988 67777787777776654
Q ss_pred cC
Q psy597 512 QG 513 (546)
Q Consensus 512 ~g 513 (546)
.+
T Consensus 268 ~~ 269 (272)
T 3u4t_A 268 HH 269 (272)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=160.96 Aligned_cols=225 Identities=16% Similarity=0.103 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.....+...|.+|...|++++|+.+|.+++.+.+.. ++.+..+.++.++|.+|...|++++|+.+|++++.+....
T Consensus 35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-- 110 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-- 110 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--
Confidence 345567777889999999999999999999998876 5667778999999999999999999999999999998665
Q ss_pred CCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
++....+.++.++|.+|... |++++|+.+|++|+++.... ++......++.++|.+|..+|++++|+.+|++++.+.
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44455678999999999996 99999999999999997653 2233446789999999999999999999999999986
Q ss_pred hhcccCcc---cCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 450 HEREFGAC---DGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 450 ~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
+....... ......+.++...|++..|..+|++++.+..... .......+..++..+ ..++.++ ++.++
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~-~~~~~~~----~~~A~ 260 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAV-NEGDSEQ----LSEHC 260 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHH-HTTCTTT----HHHHH
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHH-HcCCHHH----HHHHH
Confidence 65432110 1233455667777888888888888876521110 111122344555544 3455444 55566
Q ss_pred HHh
Q psy597 527 TRA 529 (546)
Q Consensus 527 ~~~ 529 (546)
..+
T Consensus 261 ~~~ 263 (292)
T 1qqe_A 261 KEF 263 (292)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=155.55 Aligned_cols=221 Identities=12% Similarity=0.075 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+.++..+|.++...|++++|+.+|.++++..+... ++.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~ 78 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-------------------------------------ADYKVI 78 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------------------------------CCHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-------------------------------------cchHHH
Confidence 3457899999999999999999999999999876542 234555
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.++..+|.++...|++++|+.+|++++.+. .. +.++...|++++|+..+++++..
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~----------~~~~~~~~~~~~a~~~~~~~~~~-------- 134 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH------RT----------ADILTKLRNAEKELKKAEAEAYV-------- 134 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CC----------HHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------ch----------hHHHHHHhHHHHHHHHHHHHHHc--------
Confidence 8899999999999999999999999999873 11 45677788899999999999886
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.|....++..+|.++...|++++|+.+|++++.. .|....++.++|.+|...|++++|+.+|++++...+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 4888999999999999999999999999999998 67777899999999999999999999999999876543
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
. ......+.++...|++..|...|.+++.+...... .|....++..++.+
T Consensus 207 ~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 207 V----RAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 2 33455677788999999999999999988654432 36666666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-18 Score=156.96 Aligned_cols=212 Identities=15% Similarity=0.123 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++.+|.+++..|+|++|+..|+++++.. ++....
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 43 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------------------------------------------NNQDSV 43 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------------------------------TTCCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------------------------------------------CCCCcH
Confidence 4789999999999999999999999999852 113335
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+++.+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+. ++++
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 110 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKK--------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNA 110 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcH
Confidence 6778999999999999999999999976 45568899999999999999999999999999985 2222
Q ss_pred H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 375 D----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 375 ~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
. .+.++.++|.++...|++++|+.+|++++++ +|. .+.++.++|.+|...|+. .++++..+
T Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~ 177 (228)
T 4i17_A 111 TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD-----VLRKATPL 177 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGG
T ss_pred HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhc
Confidence 1 2367999999999999999999999999998 888 899999999999877653 34444433
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
.+.. ............+.+..|..+|++++++ .|....+...++.+.
T Consensus 178 ~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 178 ASSN------KEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRTEIKQMQDQVK 224 (228)
T ss_dssp TTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred ccCC------HHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHH
Confidence 2111 1111222344556778888888888877 666666777776664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=155.50 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..++.+|.++...|++++|+..|++++.+.+. ....+++++|.++...|++++|+.+|++++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 378999999999999999999999999998420 22467788999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA-------KTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~-------~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.|....++..+|.++...|++++|+.+|++++++ .|... .++.++|.++...|++++|+..|+++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 4888999999999999999999999999999998 44433 67999999999999999999999999
Q ss_pred HHhhhh--cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 446 LTRAHE--REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 446 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
+...|. .. .....++.++...| ...+.++..+ .... .. ...+......+.+++|+.+|+
T Consensus 144 l~~~p~~~~~----~~~~~l~~~~~~~~-----~~~~~~a~~~-----~~~~---~~--~~~~~~~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 144 TDVTSKKWKT----DALYSLGVLFYNNG-----ADVLRKATPL-----ASSN---KE--KYASEKAKADAAFKKAVDYLG 204 (228)
T ss_dssp TTSSCHHHHH----HHHHHHHHHHHHHH-----HHHHHHHGGG-----TTTC---HH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcccH----HHHHHHHHHHHHHH-----HHHHHHHHhc-----ccCC---HH--HHHHHHHHHHHHHHHHHHHHH
Confidence 987443 21 11222233332222 1222333222 1111 11 123344555677899999999
Q ss_pred HHHHHhhhhc
Q psy597 524 QVLTRAHERE 533 (546)
Q Consensus 524 ~al~~~~~~~ 533 (546)
+++++.|++.
T Consensus 205 ~a~~l~p~~~ 214 (228)
T 4i17_A 205 EAVTLSPNRT 214 (228)
T ss_dssp HHHHHCTTCH
T ss_pred HHhhcCCCCH
Confidence 9999987653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=167.90 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=147.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
...+..+..+|+|++|+.++++++++..+.+|+++|.++.++++||.+|..+|+|++|+.++++++++.++.+|++||.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+..+++||.+|..+|++++|+.+|++|+++.+..+|+++|....+..+++.++..++.+++|...|.++.+.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=171.32 Aligned_cols=175 Identities=20% Similarity=0.170 Sum_probs=158.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKY-KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
..+..+.+++.+|.++...|++ ++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~- 167 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC- 167 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 4567788999999999999999 9999999999998 35557899999999999999999999999999883
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-----
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQ---------SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ----- 432 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~---------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~----- 432 (546)
|. ..++.++|.++... |++++|+.+|++++++ +|....++.++|.+|...
T Consensus 168 -------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 168 -------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp -------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhc
Confidence 55 58999999999999 9999999999999999 788889999999999999
Q ss_pred ---CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHH
Q psy597 433 ---GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS---NVAKTKNNLA 506 (546)
Q Consensus 433 ---g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~---~~~~~~~~La 506 (546)
|++++|+.+|++++.+ .| ....++.++|
T Consensus 232 ~~~g~~~~A~~~~~~al~~----------------------------------------------~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKV----------------------------------------------DRKASSNPDLHLNRA 265 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHH----------------------------------------------CGGGGGCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHh----------------------------------------------CCCcccCHHHHHHHH
Confidence 8888888888888875 44 6778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 507 SCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 507 ~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.+|...|++++|+.+|++++++.|+..
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999887643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=161.42 Aligned_cols=231 Identities=13% Similarity=0.027 Sum_probs=181.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|..+.+++.+|.++...|++++|+.+|+++++. .|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------------------------------------------~~ 74 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------------------------------------------RP 74 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CC
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------------------------------------------CC
Confidence 5789999999999999999999999999999984 34
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
....++..+|.+|...|++++|+.+|++++.+. |....++..+|.+|...|++++|+.+|++++...
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----- 141 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----- 141 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----
Confidence 456789999999999999999999999999883 3346789999999999999999999999999874
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|........++ ++...|++++|+.++.+++.. .|.... ...++.++...+++++|+..+.+++...+
T Consensus 142 ---~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 142 ---PNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQW-GWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp ---TTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred ---CCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 33333333334 346679999999999999887 222222 24578888899999999999999988766
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
.............+.++...|++++|...|++++.. .|... ...+.++...|++++|+..+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 432222344556777788999999999999999876 34322 23477888999999998887
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=157.12 Aligned_cols=188 Identities=19% Similarity=0.237 Sum_probs=160.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++.+|..++..|++++|+..|++++... ++++....+++.+|.+|...|++++|+..|++++...
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-- 82 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-- 82 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--
Confidence 356667889999999999999999999999999874 5566668899999999999999999999999999985
Q ss_pred hcCCCChHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH--------------HHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQN--------QSKYEEVERYYQRALEIYELKLGPDDSNVAKTK--------------NNL 425 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~L 425 (546)
++++....+++.+|.++.. .|++++|+..|++++... |+++....++ +.+
T Consensus 83 ---p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 83 ---QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp ---TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557788999999999999 999999999999999982 3344444444 888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 426 a~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
|.+|...|++++|+..|++++...| +++....++..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p-------------------------------------------~~~~~~~a~~~l 191 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYP-------------------------------------------DTPWADDALVGA 191 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-------------------------------------------TSTTHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCC-------------------------------------------CCchHHHHHHHH
Confidence 9999999999999999998887633 234467788999
Q ss_pred HHHHHHc----------CCHHHHHHHHHHHHHHhhhhc
Q psy597 506 ASCYLKQ----------GKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 506 a~~y~~~----------g~~~~A~~~~~~al~~~~~~~ 533 (546)
|.+|... |++++|+.+|+++++..|+++
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 192 MRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 9999877 999999999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-17 Score=152.20 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=158.4
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQIL 282 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 282 (546)
.+.......|....++..+|.++...|++++|+..|+++++.
T Consensus 45 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------------------------------- 86 (243)
T 2q7f_A 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-------------------------------------- 86 (243)
T ss_dssp THHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------------
Confidence 334444456777899999999999999999999999999984
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 283 GSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 283 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
.|....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++
T Consensus 87 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 87 ------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34456789999999999999999999999999874 2235679999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
... |....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|
T Consensus 153 ~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 153 ELN--------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HhC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 883 666778999999999999999999999999998 6667788999999999999999999999
Q ss_pred HHHHHhhh
Q psy597 443 KQVLTRAH 450 (546)
Q Consensus 443 ~~al~~~~ 450 (546)
++++...+
T Consensus 217 ~~~~~~~p 224 (243)
T 2q7f_A 217 DKAIDIQP 224 (243)
T ss_dssp HHHHHHCT
T ss_pred HHHHccCc
Confidence 99998744
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=153.94 Aligned_cols=197 Identities=18% Similarity=0.102 Sum_probs=161.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|.....+...+..+...|+|++|+..+.++++..+... ...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~--------------------------------------~~~ 112 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP--------------------------------------EFQ 112 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH--------------------------------------HHH
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh--------------------------------------hHH
Confidence 466777888899999999999999999999987422111 112
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.....++.+|.++...|++++|+.+|++++...... .+....+.+++++|.+|...|++++|+.+|++++.+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-- 188 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-- 188 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--
Confidence 344567779999999999999999999999875443 3444567899999999999999999999999999987765
Q ss_pred CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q psy597 371 KEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLTR 448 (546)
Q Consensus 371 ~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~~~~~al~~ 448 (546)
++.+. ...+++++|.+|..+|++++|+.+|++++++.... .+....+.+++++|.+|..+|++++| ..+|++++.+
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 23333 33899999999999999999999999999997543 34555788999999999999999999 8889999987
Q ss_pred hhh
Q psy597 449 AHE 451 (546)
Q Consensus 449 ~~~ 451 (546)
...
T Consensus 267 ~~~ 269 (293)
T 2qfc_A 267 FDI 269 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=142.09 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=154.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.......+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 72 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-- 72 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 34566788999999999999999999999998865 23346789999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.
T Consensus 73 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 73 ------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 666788999999999999999999999999998 666778899999999999999999999999887
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. .|....++..+|.++...|++++|..+++++++
T Consensus 139 ~----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 139 L----------------------------------------------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp H----------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c----------------------------------------------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 334467889999999999999999999999999
Q ss_pred Hhhhhcc
Q psy597 528 RAHEREF 534 (546)
Q Consensus 528 ~~~~~~~ 534 (546)
..|+...
T Consensus 173 ~~~~~~~ 179 (186)
T 3as5_A 173 LDEGASV 179 (186)
T ss_dssp HHHCCCG
T ss_pred cCCCchh
Confidence 9876543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=141.34 Aligned_cols=174 Identities=21% Similarity=0.223 Sum_probs=155.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.....+..+|.++...|++++|+..|++++. ..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------------------------------~~~~ 40 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYD--------------------------------------------ADAF 40 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCC--------------------------------------------TTSC
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------------------------------hCcc
Confidence 45678899999999999999999999998876 3345
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 106 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA--------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN------ 106 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Confidence 57789999999999999999999999999873 3346789999999999999999999999999883
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..++++++...+.
T Consensus 107 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 107 --PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred --cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 666788999999999999999999999999998 6666789999999999999999999999999998766
Q ss_pred cc
Q psy597 452 RE 453 (546)
Q Consensus 452 ~~ 453 (546)
..
T Consensus 177 ~~ 178 (186)
T 3as5_A 177 AS 178 (186)
T ss_dssp CC
T ss_pred ch
Confidence 43
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-16 Score=144.47 Aligned_cols=175 Identities=23% Similarity=0.302 Sum_probs=154.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|..+.++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+|++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 72 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-- 72 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence 457888999999999999999999999999999873 3346789999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
|....++..+|.++... |++++|+.+|++++.. +..|....++..+|.++...|++++|+.+|++++
T Consensus 73 ------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 73 ------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66678899999999999 9999999999999882 3467788899999999999999999999999988
Q ss_pred HhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
.. .|....++..+|.++...|++++|..++++++
T Consensus 141 ~~----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 141 AA----------------------------------------------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HH----------------------------------------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hh----------------------------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 33445678899999999999999999999999
Q ss_pred HHhh
Q psy597 527 TRAH 530 (546)
Q Consensus 527 ~~~~ 530 (546)
+..|
T Consensus 175 ~~~~ 178 (225)
T 2vq2_A 175 SRVE 178 (225)
T ss_dssp HHHC
T ss_pred HhCC
Confidence 9876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=137.84 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=140.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+.++..+|.++...|++++|+.++++++.+++.. ++.+..+.++.++|.++...|++++|+.++.+++.+.+.
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999877 677888999999999999999999999999999999875
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
. +.++...+.++.++|.++...|++++|+.++++++.+.... ++....+.++.++|.++...|++++|..++++++.
T Consensus 99 ~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 99 L-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5 22333778899999999999999999999999999997765 44555677889999999999999999999999999
Q ss_pred hhhh
Q psy597 448 RAHE 451 (546)
Q Consensus 448 ~~~~ 451 (546)
+...
T Consensus 176 ~~~~ 179 (203)
T 3gw4_A 176 IFAE 179 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-16 Score=161.30 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=145.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
...+..+..+|+|++|+.+|++++++..+.. ++++|..+.++.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l------------------------------------g~~Hp~~a~~~~n 356 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVF------------------------------------ADTNLYVLRLLSI 356 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB------------------------------------CTTSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc------------------------------------CCCCHHHHHHHHH
Confidence 3445567789999999999999999988887 8899999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
+|.+|..+|+|++|+.++++++.+..+.+|++||.++.++++||.+|..+|+|++|+.+|++|+++.+..+|++||.+..
T Consensus 357 La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 357 ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
+..+++.++..++.+.+|+..|.++.+.+
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-16 Score=150.47 Aligned_cols=195 Identities=19% Similarity=0.106 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.....+...+..++..|+|++|+..++++++. ....+.
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-----------------------------------------~~~~~~ 110 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-----------------------------------------EEYHPE 110 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------------------------------------CCCCHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-----------------------------------------ccCChH
Confidence 455566677788999999999999999999873 112222
Q ss_pred ---HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 292 ---VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 292 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
....+..+|.++...|++++|+.+|++++.+.... .+....+.+++++|.+|...|++++|+.+|+++++..+..
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 24455668999999999999999999999864332 3444557789999999999999999999999999988765
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-YKEAEILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~-~~eA~~~~~~al~ 447 (546)
. .+.+..+.+++++|.+|..+|++++|+.++++++++.... .+.+..+.++.++|.+|..+|+ +++|+.+|++++.
T Consensus 189 ~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 189 H-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred c-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 3557788899999999999999999999999999998776 4466778999999999999995 6999999999999
Q ss_pred hhhhc
Q psy597 448 RAHER 452 (546)
Q Consensus 448 ~~~~~ 452 (546)
++...
T Consensus 266 i~~~~ 270 (293)
T 3u3w_A 266 FFDIL 270 (293)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-16 Score=149.61 Aligned_cols=225 Identities=14% Similarity=0.142 Sum_probs=173.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|....++..++..+...|++++|+..+++++. ...+|
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~------------------------------------------~~~~P 98 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMS------------------------------------------RSVDV 98 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH------------------------------------------SCCCC
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh------------------------------------------cccCC
Confidence 455788999999999999999999999999886 22356
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.+++.+|.++...|++++|+..|++ + ....++..+|.++...|++++|+..|++++...
T Consensus 99 ~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----- 160 (291)
T 3mkr_A 99 TNTTFLLMAASIYFYDQNPDAALRTLHQ----------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQD----- 160 (291)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTT----------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHhC----------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----
Confidence 7778899999999999999999999887 1 225688899999999999999999999999873
Q ss_pred CCChHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 371 KEHPDVAKQLNN--LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 371 ~~~~~~~~~~~~--la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|........ +..++...|++++|+.+|+++++. .|..+.+++++|.++..+|++++|+..|++++..
T Consensus 161 ---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 161 ---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332222222 223344568999999999999998 6777889999999999999999999999999998
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKN-REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
.|.+. ......+.++...|+..+ +..++++++++ +|..+.+. .+..+.+.|++|..-|
T Consensus 230 ~p~~~----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--------~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 DSGHP----ETLINLVVLSQHLGKPPEVTNRYLSQLKDA--------HRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------CCCChHHH----HHHHHHHHHHHHHHHc
Confidence 66543 335566667788888876 56788888877 45544332 3444555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=143.81 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------HHHHHHHcCCHHHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN----------------LAVLYGKRGKYKEAEP 356 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 356 (546)
+..+...|..+...|++++|+..|++++.. .|....+++. +|.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788999999999999999999999998 5666777888 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH-
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY- 435 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~- 435 (546)
+|++++++ +|....++.++|.++...|++++|+.+|++++++ +|..+.+++++|.+|...|+.
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 99999998 4778889999999999999999999999999998 888889999999998877643
Q ss_pred -HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 436 -KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 436 -~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
..+...|++++.. .| ...+++.+|.++...|+
T Consensus 140 ~~~~~~~~~~~~~~----------------------------------------------~~-~~~a~~~~g~~~~~~~~ 172 (208)
T 3urz_A 140 KKKLETDYKKLSSP----------------------------------------------TK-MQYARYRDGLSKLFTTR 172 (208)
T ss_dssp HHHHHHHHC---CC----------------------------------------------CH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC----------------------------------------------Cc-hhHHHHHHHHHHHHccC
Confidence 3334444433221 22 22355667777777788
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy597 515 YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~ 532 (546)
+++|+.+|++++++.|+.
T Consensus 173 ~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 173 YEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 888888888888777653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=140.88 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++.+|..++..|+|++|+..|++++.. .+..+....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----------------------------------------~p~~~~~~~ 42 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----------------------------------------YPFGPYSQQ 42 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------------CTTSTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------------------CCCChHHHH
Confidence 467899999999999999999999999985 345666778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------------------cCCHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK------------------RGKYKEAEP 356 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~ 356 (546)
+++.+|.+|...|++++|+..|++++... ++++....+++.+|.++.. .|++++|+.
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 99999999999999999999999999885 5556667789999999886 579999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 357 LCKRALEIREKVLGKEHPDVAK--------------QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
.|+++++.. ++++.... ....+|.+|...|++++|+..|+++++.+ |+++....++
T Consensus 118 ~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~ 187 (225)
T 2yhc_A 118 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDAL 187 (225)
T ss_dssp HHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHH
T ss_pred HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHH
Confidence 999999875 33333222 22678999999999999999999999983 5566677899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+|.+|..+|++++|+..++.+....|.
T Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 188 PLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 99999999999999999999988876544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=174.97 Aligned_cols=176 Identities=15% Similarity=0.065 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
..+|.++.+++..| ...|++++|+..|+++++..-... ...
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~------------------------------------~~~ 428 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDAD------------------------------------GVD 428 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------------------------------------------C
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccc------------------------------------ccc
Confidence 44566666666666 789999999999999982111101 225
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....+++.+|.+|...|++++|+..|++++... |....+++++|.++...|++++|+..|++++++.
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--- 497 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--- 497 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 67778889999999999999999999999999984 3447899999999999999999999999999994
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|....++.++|.++...|++++ +.+|++++++ +|....+++++|.+|..+|++++|+..|++++++
T Consensus 498 -----P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 498 -----PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp -----TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred -----CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 7788999999999999999999 9999999999 8888899999999999999999999999999876
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-16 Score=151.17 Aligned_cols=211 Identities=13% Similarity=0.024 Sum_probs=167.5
Q ss_pred ChhHHHHHHHHHHHHHH-------hhcH-------HHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 289 HPDVATMLNILALVYRD-------QNKY-------KEAANLLNDALT-IREKTLGENHAAVAATLNNLAVLYGKRGKYKE 353 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~ 353 (546)
.|..+.+|+.+|.++.. .|++ ++|...|++|+. + .|....+|..+|.++...|++++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHhcCCHHH
Confidence 35566778888888764 4665 899999999997 4 34557789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAK-QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK- 431 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~- 431 (546)
|...|++++++. |.... ++.++|.++...|++++|+..|+++++. .|....++...+.+...
T Consensus 118 A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 118 VHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHTSS--------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------TTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHH
Confidence 999999999863 44343 8999999999999999999999999986 34445556655555443
Q ss_pred cCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHH
Q psy597 432 QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS-NVAKTKNNLASCYL 510 (546)
Q Consensus 432 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~-~~~~~~~~La~~y~ 510 (546)
.|++++|...|++++...|... ......+..+...|+++.|...|++++... ...| ....++..++.++.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIP----EYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999876532 233444555777899999999999998630 0133 35678889999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhh
Q psy597 511 KQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..|++++|..+++++++..|+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHSCHHHHHHHHHHHHHHTTTT
T ss_pred HcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999864
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-16 Score=142.15 Aligned_cols=183 Identities=13% Similarity=0.133 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..++.+|..+...|++++|+..|++++... ++.+....+++.+|.+|...|++++|+..|+++++.. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence 4568899999999999999999999999874 4456667899999999999999999999999999885 55
Q ss_pred ChHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH------------
Q psy597 373 HPDVAKQLNNLALLCQN------------------QSKYEEVERYYQRALEIYELKLGPDDSNVAKTK------------ 422 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~------------------~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~------------ 422 (546)
++....+++.+|.++.. .|++++|+..|+++++.+ |+++....++
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 56667789999999876 578999999999999872 3343333333
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy597 423 --NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500 (546)
Q Consensus 423 --~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 500 (546)
..+|.+|...|++++|+..|+++++.. ++++....
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------------------------------------------p~~~~~~~ 185 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-------------------------------------------PDTQATRD 185 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------------------------------------TTSHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------------------------------------------cCCCccHH
Confidence 344555555555555555555555432 33566678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
++..+|.+|..+|++++|+..++.+....|...
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 999999999999999999999998887655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=135.45 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+.++..+|.++...|++++|+.+|++++..+...+ +.+.
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~ 64 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--------------------------------------DHTA 64 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--------------------------------------CcHH
Confidence 46789999999999999999999999999999887654 6678
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+.++..+|.+|...|++++|+.++.+++.+.+.. ++.+ ..+.++.++|.++...|++++|+.++++++.+.+..
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 140 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-- 140 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--
Confidence 88999999999999999999999999999998865 4334 778899999999999999999999999999987665
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
++....+.++.++|.++...|++++|+.++++++++.+.. ++......+..+++.+.
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGLE 197 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccchh
Confidence 4445567788999999999999999999999999998877 44555666666666553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=147.85 Aligned_cols=197 Identities=14% Similarity=0.068 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+.....+...+..+...|+|++|+..+.+++...+.. +........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG- 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence 5556677888999999999999999999998864221 1122345667789999999999999999999999875332
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~-~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+....+.+++++|.+|...|++++|+.+|++++++++.. ++.+.. ..+++++|.+|..+|++++|+.++++++.+
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2334567899999999999999999999999999987765 334433 389999999999999999999999999986
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLT 527 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A-~~~~~~al~ 527 (546)
.+.. .+......++.++|.+|..+|++++| ..+|++|+.
T Consensus 226 ~~~~----------------------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 226 SCRI----------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHT----------------------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhc----------------------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4221 12345678899999999999999999 888999998
Q ss_pred Hhhhh
Q psy597 528 RAHER 532 (546)
Q Consensus 528 ~~~~~ 532 (546)
++...
T Consensus 266 ~~~~~ 270 (293)
T 2qfc_A 266 FFDIL 270 (293)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=137.33 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=112.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|+|++|+.+|++++++ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4788999999999999999999855 5667888999999999999999999999999999 48889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL-YKQVLTR 448 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~-~~~al~~ 448 (546)
.++.++|.+|...|++++|+.+|++++++ +|..+.++.++|.+|...|++++|... +++++++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 888899999999999999999887665 5888886
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.6e-16 Score=144.96 Aligned_cols=188 Identities=15% Similarity=0.056 Sum_probs=161.3
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.+...+.......|....++..+|.+|...|++++|+.+|+++++.
T Consensus 55 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------------------- 100 (252)
T 2ho1_A 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS---------------------------------- 100 (252)
T ss_dssp GGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------
Confidence 3444444444445777889999999999999999999999999984
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.|....++..+|.++...|++++|+.+|++++.. +..|....++..+|.++...|++++|+.+|
T Consensus 101 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 101 ----------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD------TLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp ----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC------ccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2444678999999999999999999999999871 346677889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
++++... |....++..+|.++...|++++|+.++++++.. .|....++..++.++...|++++|
T Consensus 165 ~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 165 EKSLRLN--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHH
Confidence 9999883 566788999999999999999999999999886 566677889999999999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy597 439 EILYKQVLTRAHER 452 (546)
Q Consensus 439 ~~~~~~al~~~~~~ 452 (546)
..++++++...+.+
T Consensus 229 ~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 229 ASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999886543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-15 Score=128.37 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=142.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+..+.++..+|.++...|++++|+.++.+++.+.+.. ++....+.++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 556778899999999999999999999999999999887 666777889999999999999999999999999999876
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
. ++.+....++.++|.++...|++++|+.++++++.+.... ++.+....++.++|.+|...|++++|+.++++++.
T Consensus 82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6 4456678899999999999999999999999999998776 44667788999999999999999999999999998
Q ss_pred hhhh
Q psy597 448 RAHE 451 (546)
Q Consensus 448 ~~~~ 451 (546)
+..+
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-16 Score=141.21 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++..|..++..|+|++|+..|+++++..|.... .++... ..........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~~----------------------~~~~~~~~~~ 55 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE------MYYWTN----------------------VDKNSEISSK 55 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH------HHHHHH----------------------SCTTSHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------HHHHhh----------------------hcchhhhhHH
Confidence 567888999999999999999999999986433220 000000 0112223334
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
..+.+|.+|...|++++|+..|++++.+ .|....++.++|.++...|++++|+.+|++++++ +|
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P 119 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EA 119 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC
Confidence 4455999999999999999999999998 4555789999999999999999999999999998 48
Q ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 375 DVAKQLNNLALLCQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
....+++++|.+|+..|+. ..+...|.+++. .+....+++++|.++...|++++|+.+|++++.+.|.
T Consensus 120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8889999999999877643 445566665532 2233456788999999999999999999999998654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=145.68 Aligned_cols=196 Identities=15% Similarity=0.077 Sum_probs=159.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV---AATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
......+...+..+...|++++|...+++++... +..+.. ...+..+|.++...|++++|+.+|++++.+..
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 3444556666888999999999999999998753 223332 44566799999999999999999999998642
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
.. .+....+.+++++|.+|...|++++|+.+|+++++.++... .+.+..+.+++++|.+|..+|++++|+.++++++
T Consensus 147 ~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 147 TG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp CC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 21 33344577899999999999999999999999999887652 3567788899999999999999999999999999
Q ss_pred HhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q psy597 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-KYKEAEILYKQV 525 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-~~~~A~~~~~~a 525 (546)
.+.+.. .+.+..+.++.++|.+|..+| .+++|+.+|++|
T Consensus 224 ~~~~~~----------------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 224 EISCRI----------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHT----------------------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHc----------------------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 875432 124566889999999999999 579999999999
Q ss_pred HHHhhhhc
Q psy597 526 LTRAHERE 533 (546)
Q Consensus 526 l~~~~~~~ 533 (546)
+.++...+
T Consensus 264 l~i~~~~~ 271 (293)
T 3u3w_A 264 SFFFDILE 271 (293)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99987543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-17 Score=138.83 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=128.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 299 (546)
.||.++...|++++|+..+++++. ..|..+..++.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~--------------------------------------------~~p~~~~~~~~l 37 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP--------------------------------------------SPRQKSIKGFYF 37 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC--------------------------------------------SHHHHHTTHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc--------------------------------------------cCcccHHHHHHH
Confidence 478888899999999999998865 567778889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
|.+|...|+|++|+.+|++++.+ .|..+.++..+|.+|...|++++|+.+|++++++ .|....+
T Consensus 38 a~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 101 (150)
T 4ga2_A 38 AKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDL 101 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHH
Confidence 99999999999999999999998 4555889999999999999999999999999999 4888899
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 380 LNNLALLCQNQSKYEEVERY-YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~-~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
+.++|.+|...|++++|... +++++++ +|..+.++...+.++..+|+
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l--------~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKL--------FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999887765 5999999 88888899999999988885
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-15 Score=127.34 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=141.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
+.+..+.++..+|.++...|++++|+.++.++++..+... +.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------------------------~~ 45 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--------------------------------------DK 45 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------------------CH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--------------------------------------Cc
Confidence 3456788999999999999999999999999999887654 55
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...+.++..+|.++...|++++|+.++++++.+.+.. ++.+....++.++|.++...|++++|+.++++++.+.+..
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~- 122 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL- 122 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-
Confidence 6677899999999999999999999999999999887 6677778899999999999999999999999999998766
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
.+++....++.++|.++...|++++|+.++++++++.+.
T Consensus 123 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 123 -KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred -cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999999998643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=142.75 Aligned_cols=195 Identities=17% Similarity=0.196 Sum_probs=165.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 365 (546)
|..+.+++.+|.++...|++++|+.+|+++++. ++ ..+++.+|.+|.. .|++++|+.+|+++++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 445678999999999999999999999999872 12 4679999999999 999999999999998761
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKE 437 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~e 437 (546)
...+++++|.+|.. .+++++|+.+|+++++. . .+.++.++|.+|.. .|++++
T Consensus 73 ----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 73 ----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------K--YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp ----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------C--CccHHHHHHHHHHcCCCcccCHHH
Confidence 46788999999999 99999999999999985 2 45789999999999 999999
Q ss_pred HHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--
Q psy597 438 AEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-- 511 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-- 511 (546)
|+.+|++++...+ ......++.++.. .+++++|..+|+++++. ....++..+|.+|..
T Consensus 133 A~~~~~~a~~~~~------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 133 AVEYFTKACDLND------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCc------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCC
Confidence 9999999998531 2234455666776 88999999999999864 124688999999999
Q ss_pred --cCCHHHHHHHHHHHHHHhh
Q psy597 512 --QGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 512 --~g~~~~A~~~~~~al~~~~ 530 (546)
.+++++|+.+|+++++..+
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELEN 217 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHhCCC
Confidence 9999999999999998754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-15 Score=151.85 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
+....|..+...|+|++|+..|.++++..+............ .........++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~al 58 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---------------------------DKRRNEQETSI 58 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---------------------------SHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---------------------------HHHhhhHHHHH
Confidence 455678888999999999999999998644433110000000 00113345678
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
..+|.+|...|++++|.+++.+++.+.... ++......+...++.++...|++++|+.++++++...... .+.+..
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 134 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLK 134 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHH
Confidence 999999999999999999999999998765 4444556678889999999999999999999999998776 556678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
+.++.++|.+|...|+|++|..++++++...... .+.+....++..+|.+|...|++++|..+|++++.+.+...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--- 209 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--- 209 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC---
Confidence 8999999999999999999999999999887655 56788899999999999999999999999999998654321
Q ss_pred ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.........+..+|.++...|++.+|..+|.+++...+.
T Consensus 210 ------------------------------------~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 210 ------------------------------------CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 011234556667777777777777777777777776544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-14 Score=146.46 Aligned_cols=258 Identities=15% Similarity=0.153 Sum_probs=193.5
Q ss_pred hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhh----hhhhHHHHHHHHHHHHhc
Q psy597 212 PARLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRS----RKESYDIVKQAKVAQILG 283 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~ 283 (546)
+.++.+++.+|.+|.. .+++++|+.+|+++.+. +.. .+...+...... ..+...+...+..+..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-- 107 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYT-PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-- 107 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--
Confidence 4457899999999999 99999999999999863 111 122222222211 2233333333333321
Q ss_pred cCCCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAE 355 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~ 355 (546)
...+.+++.+|.+|.. .+++++|+.+|+++.+. + ...+++.+|.+|.. .+++++|+
T Consensus 108 ------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~----~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 108 ------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------G----RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp ------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T----CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred ------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 1245778899999998 88999999999998764 1 25688999999998 88999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
.+|+++++. ....++.++|.+|.. .+++++|+.+|+++.+. . .+.++.++|.+|..
T Consensus 172 ~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 172 EWYSKAAEQ----------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------G--DELGQLHLADMYYF 231 (490)
T ss_dssp HHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHHc
Confidence 999999864 136788999999998 89999999999999874 1 24578899999997
Q ss_pred ----cCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 432 ----QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 432 ----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
.+++++|+.+|++++... .......++.++.. .+++..|..+|+++.+. ....++.
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----------~~~~a~~ 295 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----------GNSDGQY 295 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----------TCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHH
Confidence 899999999999998641 22334455555666 77888888888887632 3356889
Q ss_pred HHHHHHHHc-----CCHHHHHHHHHHHHHHh
Q psy597 504 NLASCYLKQ-----GKYKEAEILYKQVLTRA 529 (546)
Q Consensus 504 ~La~~y~~~-----g~~~~A~~~~~~al~~~ 529 (546)
.+|.+|... +++++|+.+|+++.+..
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 999999998 99999999999998863
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=147.75 Aligned_cols=256 Identities=14% Similarity=0.121 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhh----hhhhHHHHHHHHHHHHhccC
Q psy597 214 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRS----RKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 214 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~ 285 (546)
.+.+++.+|.+|.. .+++++|+.+|+++++. +. ..+...+...... ..+...+...+..+..
T Consensus 146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---- 215 (490)
T 2xm6_A 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-----GN-VWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT---- 215 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CC-HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH----
Confidence 45677788888877 77888888888887663 11 1111111111111 1222222222222211
Q ss_pred CCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPL 357 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 357 (546)
...+.+++.+|.+|.. .+++++|+.+|+++++. . ...+++.+|.+|.. .+++++|+.+
T Consensus 216 ----~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 216 ----SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------G----NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp ----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT------T----CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 1234678999999997 88999999999999864 1 15578999999999 9999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ-----SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
|+++.+. ....+++.+|.+|... +++++|+.+|+++++. . ...+++++|.+|...
T Consensus 282 ~~~a~~~----------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 282 YRKSAEQ----------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--------G--DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHHHTT----------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHS
T ss_pred HHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--------C--CHHHHHHHHHHHHhC
Confidence 9999754 2345788999999998 9999999999999875 2 235789999999987
Q ss_pred C---CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 433 G---KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 433 g---~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
| ++++|+.+|++++... .......++.++.. .+++..|..+|++|.+. ....++.+|
T Consensus 342 g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~L 405 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQL 405 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHH
Confidence 7 8999999999998751 22345566777777 78999999999998863 136788999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHHh
Q psy597 506 ASCYLK----QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 506 a~~y~~----~g~~~~A~~~~~~al~~~ 529 (546)
|.+|.. .+++++|..+|++|++..
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999999 899999999999999987
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-14 Score=145.76 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=118.4
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..|+|++|+..+++++.+..+.+|+++|.++.+++++|.+|..+|+|++|+.++++++++.++.+|++||..+..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
.+|..+|++++|+.+|++|+++.+..+|+++|....+..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999888775
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=121.19 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=109.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
-+|..+..+..+|..|+..|+|++|+..|++++.+ .|....++.++|.+|..+|++++|+..|++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 57999999999999999999999999999999988 4555789999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
+|....++.++|.++..+|++++|+.+|++++++ +|....++.+|+.++
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 4778899999999999999999999999999999 888888999888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=7.9e-15 Score=142.91 Aligned_cols=220 Identities=10% Similarity=0.031 Sum_probs=168.6
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhh
Q psy597 202 AQQVNAGYEIPARLRTLHNLVIQYAS-------QGRY-------EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267 (546)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~ 267 (546)
..........|..+.+|+.+|..+.. .|++ ++|+..|++|++.
T Consensus 37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----------------------- 93 (308)
T 2ond_A 37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------------------- 93 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-----------------------
Confidence 34445555578889999999998874 5886 8999999998861
Q ss_pred hhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy597 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347 (546)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~ 347 (546)
..|....+|..+|.++...|++++|...|++++.+. +..+. .+|..+|.++..
T Consensus 94 --------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~--~~~~~~~~~~~~ 146 (308)
T 2ond_A 94 --------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPT--LVYIQYMKFARR 146 (308)
T ss_dssp --------------------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSCTH--HHHHHHHHHHHH
T ss_pred --------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----ccCcc--HHHHHHHHHHHH
Confidence 145667789999999999999999999999999862 22221 279999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN-QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
.|++++|+..|+++++.. |....++...+.+... .|++++|+.+|+++++. .|..+.++.++|
T Consensus 147 ~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 210 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYI 210 (308)
T ss_dssp HHCHHHHHHHHHHHHTST--------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHH
Confidence 999999999999999863 3345556666665443 79999999999999998 566778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHH
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 487 (546)
.++...|++++|..+|++++...+-.+..........+......|+.+.|...+.++++.+
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999985210000011122233444667899999999999998873
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=145.31 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=127.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
..-+..+|+|++|+..+++++++..+.+|+++|..+.++.++|.+|..+|+|++|+.++++++.+.++.+|++||..+..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
+++||.+|..+|++++|+.+|++|+++.+..+|+++|....++.+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=119.45 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+|..+..+.++|..|+..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 6888999999999999999999999999999998 4888899999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|....++.++|.+|..+|++++|+..|++++++.|
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 888899999999999999999999999999999743
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=136.68 Aligned_cols=169 Identities=17% Similarity=0.091 Sum_probs=151.2
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|.....+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----
Confidence 566778999999999999999999999999998 45557889999999999999999999999998774
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
|.........+..+...++.++|+..|++++.. +|....+++++|.+|...|++++|+..|.+++..
T Consensus 182 ----p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~- 248 (287)
T 3qou_A 182 ----QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX- 248 (287)
T ss_dssp ----CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-
Confidence 556677777888888999999999999999999 8889999999999999999999999999999986
Q ss_pred hhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV--AKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~--~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
+|.. ..++..++.++...|+.++|...|++++.
T Consensus 249 ---------------------------------------------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 ---------------------------------------------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---------------------------------------------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------------------------------------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 3333 67888999999999999999999999987
Q ss_pred H
Q psy597 528 R 528 (546)
Q Consensus 528 ~ 528 (546)
.
T Consensus 284 ~ 284 (287)
T 3qou_A 284 A 284 (287)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-15 Score=160.45 Aligned_cols=173 Identities=13% Similarity=0.022 Sum_probs=148.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
..+|....+++.+|.+|...|++++|+..|+++++.
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 462 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-------------------------------------------- 462 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------------------------------------------
Confidence 667888999999999999999999999999999984
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....+++.+|.+|...|++++|+..|++++.+ .|....+++++|.++...|++++ +.+|++++++
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---- 529 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---- 529 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH----
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh----
Confidence 3556788999999999999999999999999998 45557889999999999999999 9999999998
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~~~~~al~ 447 (546)
+|....+++++|.++...|++++|+..|++++++ +|....++.++|.++...|+.+++ ...+++++.
T Consensus 530 ----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 530 ----NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred ----CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 4888889999999999999999999999999998 899999999999999887775555 556666665
Q ss_pred hhh
Q psy597 448 RAH 450 (546)
Q Consensus 448 ~~~ 450 (546)
...
T Consensus 598 ~l~ 600 (681)
T 2pzi_A 598 RVE 600 (681)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.7e-15 Score=130.01 Aligned_cols=167 Identities=14% Similarity=0.030 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
...+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~------- 70 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY------- 70 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-------
Confidence 3457888999999999999999999999884 5558899999999999999999999999998764
Q ss_pred ChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 373 HPDVAKQLNNLALLC-QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 373 ~~~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
| .......++.+. ...+...+|+..|+++++. +|....+++++|.++...|++++|+..|++++...|.
T Consensus 71 -p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 71 -Q-DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp -C-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred -C-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 3 233334444332 2334455689999999998 8888899999999999999999999999999886321
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
+....++..+|.++...|++++|...|++++..
T Consensus 141 --------------------------------------------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 141 --------------------------------------------AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --------------------------------------------TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --------------------------------------------cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 122457889999999999999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=137.02 Aligned_cols=169 Identities=15% Similarity=0.100 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.....++.+|..+...|++++|+..|+++++. .|.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~P~ 149 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------------------------------------------SNQ 149 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------TTS
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------------------------------------------CCc
Confidence 677889999999999999999999999999984 466
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+++.+|.++...|++++|+..+++++... |.........+..+...++.++|+..+++++..
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~------- 214 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE------- 214 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-------
Confidence 67889999999999999999999999998762 333556677778888999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV--AKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~--~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+|....+++++|.++...|++++|+..|.+++.. +|.. ..++.+++.++...|+.++|...|++++..
T Consensus 215 -~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 215 -NPEDAALATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4888999999999999999999999999999998 6666 889999999999999999999999999874
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-15 Score=131.01 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.....++.+|..+...|++++|+..|+++++. .|..
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~P~~ 39 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDE--------------------------------------------LQSR 39 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------------------------------------------HHTS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------------------------CCCc
Confidence 33456888999999999999999999999884 4666
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
+.+++.+|.++...|++++|+..|++++... + ++ ..+..++.+. ...+....|+..++++++.
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p-~~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------- 103 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEY-----Q-DN---SYKSLIAKLELHQQAAESPELKRLEQELAA------- 103 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-CH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-Ch---HHHHHHHHHHHHhhcccchHHHHHHHHHHh-------
Confidence 7889999999999999999999999998763 2 23 2333344332 2333445689999999988
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV--AKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~--~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....+++++|.++...|++++|+.+|+++++. +|.. ..++.++|.++..+|++++|+..|++++..
T Consensus 104 -~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 104 -NPDNFELACELAVQYNQVGRDEEALELLWNILKV--------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4888899999999999999999999999999987 5543 568999999999999999999999999874
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=125.60 Aligned_cols=165 Identities=15% Similarity=0.075 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG----KYKEAEPLCKRALEIRE 366 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~ 366 (546)
..+.+++.+|.+|...+++++|+.+|+++++. . .+.+++++|.+|.. + ++++|+.+|+++.+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-- 82 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------G----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-- 82 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--
Confidence 34678999999999999999999999999864 1 25789999999998 7 999999999999643
Q ss_pred HhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEA 438 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA 438 (546)
..+.++++||.+|.. .+++++|+.+|+++++. .+....+.++++||.+|.. .+++++|
T Consensus 83 --------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 83 --------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp --------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred --------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 356788999999998 89999999999999986 2122568899999999999 8899999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-C----
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-G---- 513 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g---- 513 (546)
+.+|+++... +....++++||.+|... |
T Consensus 149 ~~~~~~A~~~-----------------------------------------------~~~~~a~~~Lg~~y~~g~gg~~~ 181 (212)
T 3rjv_A 149 SEYFKGSSSL-----------------------------------------------SRTGYAEYWAGMMFQQGEKGFIE 181 (212)
T ss_dssp HHHHHHHHHT-----------------------------------------------SCTTHHHHHHHHHHHHCBTTTBC
T ss_pred HHHHHHHHHc-----------------------------------------------CCCHHHHHHHHHHHHcCCCCCCC
Confidence 9999998864 11223678889988764 3
Q ss_pred -CHHHHHHHHHHHHHHh
Q psy597 514 -KYKEAEILYKQVLTRA 529 (546)
Q Consensus 514 -~~~~A~~~~~~al~~~ 529 (546)
++++|+.+|+++.+..
T Consensus 182 ~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 182 PNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 8999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-13 Score=138.94 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=117.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHH
Q psy597 226 ASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRD 305 (546)
Q Consensus 226 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 305 (546)
...|+|++|+.+|++++++..+.. ++++|..+.++.++|.+|..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~l------------------------------------g~~Hp~~a~~~~nLa~~y~~ 352 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVF------------------------------------EDSNVYMLHMMYQAMGVCLY 352 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTB------------------------------------CTTSHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCcc------------------------------------ChhchHHHHHHHHHHHHHHh
Confidence 346889999999999999888877 88999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
+|+|++|+.++++++.+.++.+|+++|.++..+++||.+|..+|+|++|+.+|++|+++.+..+|++||.+..+..+|.
T Consensus 353 ~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 353 MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=125.35 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+|....+++.+|.++...|++++|+.+|++++.+ +|..+.+|.++|.++...|++++|+.+|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 6888999999999999999999999999999999 4888999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+|..+.+++++|.+|..+|++++|+..|++++.+.++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888899999999999999999999999999998654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-12 Score=132.21 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+....++..+|.+|...|++++|+.++.+++...+... ....
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------------~~~~ 93 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA--------------------------------------KSKT 93 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC--------------------------------------HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc--------------------------------------chHH
Confidence 34456789999999999999999999999998776543 2344
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+...+|.++...|+++.|+.++.+++...... .+.+..+.++.++|.+|...|+|.+|..++.+++...... .
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~ 169 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--D 169 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--c
Confidence 55677888999999999999999999999998887 6667778999999999999999999999999999887655 5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD-SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~-~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+.+....++..+|.+|...|++++|..+|++++.+.... +++ ......+..+|.++...|+|++|..+|.+++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 668889999999999999999999999999999987765 223 34577889999999999999999999999998765
Q ss_pred hc
Q psy597 451 ER 452 (546)
Q Consensus 451 ~~ 452 (546)
..
T Consensus 248 ~~ 249 (434)
T 4b4t_Q 248 NL 249 (434)
T ss_dssp HT
T ss_pred hh
Confidence 43
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=125.32 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....+++++|.++...|++++|+.+|++++.+ +|..+.++.++|.+|..+|++++|+..|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 5999999999999999999999999999999999 8999999999999999999999999999999986
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|..+.+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus 100 ------------------------------------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 100 ------------------------------------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp ------------------------------------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ------------------------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 45556789999999999999999999999999998765
Q ss_pred c
Q psy597 533 E 533 (546)
Q Consensus 533 ~ 533 (546)
+
T Consensus 138 ~ 138 (151)
T 3gyz_A 138 K 138 (151)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=138.35 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
........+..+|+|++|+..|++++++..+.. ++++|..+.++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l------------------------------------g~~h~~~~~~~ 332 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERL------------------------------------PDINIYQLKVL 332 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC------------------------------------CTTSHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC------------------------------------CccchHHHHHH
Confidence 344445567788999999999999998766665 77999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
.++|.+|..+|+|++|+.++++++.++++.+|+++|.++..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+
T Consensus 333 ~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 333 DCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q psy597 377 AKQLNNLALLCQNQ 390 (546)
Q Consensus 377 ~~~~~~la~~~~~~ 390 (546)
..++.+|+.+....
T Consensus 413 ~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 413 EDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=141.49 Aligned_cols=167 Identities=20% Similarity=0.206 Sum_probs=139.1
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CChHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------EHPDVA 377 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 377 (546)
..+++++|+..|.+++.. .|..+.++..+|.++...|+|++|+.+|++++.+....... ..+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 456778888888888776 46668899999999999999999999999999985111000 001226
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~ 457 (546)
.++.++|.+|...|++++|+.+|++++++ +|....+++++|.+|..+|++++|+..|++++.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------- 259 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------- 259 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------
Confidence 89999999999999999999999999999 7888999999999999999999999999999986
Q ss_pred cCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhhhhc
Q psy597 458 DGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLTRAHERE 533 (546)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A-~~~~~~al~~~~~~~ 533 (546)
.|....++..++.++...|++++| ...|++++......+
T Consensus 260 -------------------------------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (336)
T 1p5q_A 260 -------------------------------------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299 (336)
T ss_dssp -------------------------------------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455567888999999999999998 568888887665543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=147.03 Aligned_cols=153 Identities=15% Similarity=0.050 Sum_probs=107.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.|++++|+..|++++... |....++..+|.++...|++++|+.+|++++++ .|....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 478999999999999873 444788999999999999999999999999987 3777889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhH
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 465 (546)
+|...|++++|+.+|++++++ +|....++.++|.+|...|++++|+.+|+++++..+... ......+.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~ 133 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP----YITAQLLN 133 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 999999999999999999998 777888999999999999999999999999998743221 11222333
Q ss_pred HHHhh---chhhHHHHHHHHHHHH
Q psy597 466 QDRQK---NKAKNREKYYQRALEI 486 (546)
Q Consensus 466 ~~~~~---~~~~~A~~~~~~Al~~ 486 (546)
++... |++++|...|+++++.
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHhc
Confidence 34444 4455555555554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=146.04 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=126.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhh
Q psy597 228 QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQN 307 (546)
Q Consensus 228 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g 307 (546)
.|++++|+..|+++++. .|....+++.+|.++...|
T Consensus 2 ~g~~~~A~~~~~~al~~--------------------------------------------~p~~~~~~~~lg~~~~~~g 37 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------------------------------------------RPQDFVAWLMLADAELGMG 37 (568)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh--------------------------------------------CCCCHHHHHHHHHHHHHcC
Confidence 47889999999999873 4556778999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 387 (546)
++++|+.+|++++++ .|....++.++|.+|...|++++|+.+|+++++. .|....++.++|.++
T Consensus 38 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 38 DTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHAL 101 (568)
T ss_dssp CHHHHHHHHHHHHTT--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Confidence 999999999999987 4555788999999999999999999999999998 377788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhh
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ---GKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~---g~~~eA~~~~~~al~~~~~ 451 (546)
...|++++|+.+|++++++ .|....++.++|.++..+ |++++|...|++++...+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 9999999999999999998 777788999999999999 9999999999999998654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=142.34 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 334 VAATLNNLAVLYGK-------RGKYK-------EAEPLCKRALE-IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398 (546)
Q Consensus 334 ~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 398 (546)
...+|..+|..+.. .|+++ +|+..|++++. + .|....++..+|.++...|++++|..
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--------~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--------CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 35678888888876 79987 88888888886 4 37778899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH-HHhhchhhHH
Q psy597 399 YYQRALEIYELKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DRQKNKAKNR 476 (546)
Q Consensus 399 ~~~~al~~~~~~~~~~~~~~-~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A 476 (546)
.|++++++ .|.. ..+|.++|.++...|++++|...|++++...+.. .......++. +...|+.+.|
T Consensus 343 ~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~----~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 343 IYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HHHHHHHS--------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC----THHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHhCc--------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc----hHHHHHHHHHHHHHcCChhHH
Confidence 99999987 4433 3589999999999999999999999999863321 1111111222 3357899999
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 477 EKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 477 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
...|+++++. .|....++..++.++...|++++|..+|++++...+
T Consensus 411 ~~~~e~al~~--------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 411 FKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHH--------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH--------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 9999999987 455577889999999999999999999999998643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=128.88 Aligned_cols=214 Identities=15% Similarity=0.060 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
+....++..|.-+ ..+++..|...|.++++. +|..
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------------------------------------------dP~~ 39 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNY--------------------------------------------DESA 39 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------------------------------------------CTTC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------------------------------------------Chhh
Confidence 3456677777776 689999999999999984 6888
Q ss_pred HHHHHHH-------HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH-------------HHHHHHHHHHHHHHHcCCHH
Q psy597 293 ATMLNIL-------ALVYRDQNKYKEAANLLNDALTIREKTLGENHA-------------AVAATLNNLAVLYGKRGKYK 352 (546)
Q Consensus 293 ~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~-------------~~~~~~~~la~~~~~~g~~~ 352 (546)
+.+|..+ +.++...+++.+++..+.+++.+.+..++.... ....+...++.++...|+|+
T Consensus 40 ~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~ 119 (282)
T 4f3v_A 40 CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYA 119 (282)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHH
Confidence 8999999 899999999999999999999876554332111 12456677899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHH
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLK 431 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~ 431 (546)
+|...|..++.. .|... ..+.+|.++...+++++|+.+|+++... + ++. ...+++++|.++..
T Consensus 120 eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 120 DAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHH
Confidence 999999988764 36666 8999999999999999999999977554 2 333 35689999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHH
Q psy597 432 QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN-VAKTKNNLASCYL 510 (546)
Q Consensus 432 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~-~~~~~~~La~~y~ 510 (546)
+|++++|+.+|++++.. +..|. ...+.+.+|.++.
T Consensus 184 LG~~~eAl~~l~~a~~g--------------------------------------------~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 184 LALFTEAERRLTEANDS--------------------------------------------PAGEACARAIAWYLAMARR 219 (282)
T ss_dssp TTCHHHHHHHHHHHHTS--------------------------------------------TTTTTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcC--------------------------------------------CCCccccHHHHHHHHHHHH
Confidence 99999999999998742 11144 6678899999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhh
Q psy597 511 KQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~ 531 (546)
.+|+.++|...|++++...|+
T Consensus 220 ~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTCHHHHHHHHHHHHHHSCC
T ss_pred HcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998776
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=111.52 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
++.+.++.++|..++..|+|++|+.+|++|+++ +|..+.++.++|.+|..+|++++|+..|++++.+.+...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 667889999999999999999999999999999 888899999999999999999999999999999865432
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
...+..+.++.++|.+|..+|++++|+.+|++++...|+
T Consensus 77 ---------------------------------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 77 ---------------------------------------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ---------------------------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 113456778999999999999999999999999997654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=138.84 Aligned_cols=146 Identities=22% Similarity=0.244 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE-------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
.|..+.++..+|.+++..|++++|+..|++++.+.+..... ..+....++.++|.+|...|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46778899999999999999999999999999985332000 01334689999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EI 440 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~ 440 (546)
+++ .|....+++++|.+|...|++++|+.+|++++++ +|....++.+++.++..+|++++| ..
T Consensus 223 l~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 223 LEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 4778899999999999999999999999999999 788888999999999999999999 56
Q ss_pred HHHHHHHhhh
Q psy597 441 LYKQVLTRAH 450 (546)
Q Consensus 441 ~~~~al~~~~ 450 (546)
.|++++....
T Consensus 287 ~~~~~~~~~~ 296 (336)
T 1p5q_A 287 LYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7888877644
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=109.59 Aligned_cols=134 Identities=37% Similarity=0.539 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 415 (546)
.+++.+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 467889999999999999999999998873 556778899999999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC
Q psy597 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495 (546)
Q Consensus 416 ~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 495 (546)
|....++..+|.++...|++++|+.++++++.. .
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------------------------~ 99 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------------------------------------D 99 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------------------------------------C
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------------------------------------C
Confidence 666778899999999999999999999998875 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 496 ~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
|....++..+|.++...|++++|..++++++...|.
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 333557788999999999999999999999987653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=109.12 Aligned_cols=133 Identities=35% Similarity=0.481 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 467889999999999999999999998762 3336688999999999999999999999999873
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..++++++...|
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 556778899999999999999999999999988 566677899999999999999999999999998644
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-13 Score=121.25 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.++.+++.+|.+|...+++++|+.+|+++.+. ..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------------------------------------------g~ 49 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------------------------------------------GD 49 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------------------------------------TC
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------------------------------------CC
Confidence 45789999999999999999999999999871 23
Q ss_pred HHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQN----KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEI 364 (546)
Q Consensus 293 ~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 364 (546)
+.+++.+|.+|.. + ++++|+.+|+++.+. ..+.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 5779999999998 7 999999999999653 236689999999998 89999999999999976
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-C-----C
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-G-----K 434 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g-----~ 434 (546)
. +....+.++++||.+|.. .+++++|+.+|+++++. +.+ +.++++||.+|... | +
T Consensus 119 ~------~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~---~~a~~~Lg~~y~~g~gg~~~~d 183 (212)
T 3rjv_A 119 S------ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRT---GYAEYWAGMMFQQGEKGFIEPN 183 (212)
T ss_dssp T------TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCT---THHHHHHHHHHHHCBTTTBCCC
T ss_pred C------CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHcCCCCCCCCC
Confidence 2 111568899999999999 89999999999999885 222 34789999999875 3 8
Q ss_pred HHHHHHHHHHHHHh
Q psy597 435 YKEAEILYKQVLTR 448 (546)
Q Consensus 435 ~~eA~~~~~~al~~ 448 (546)
+++|+.+|+++.+.
T Consensus 184 ~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 184 KQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999986
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=124.84 Aligned_cols=234 Identities=10% Similarity=0.089 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 217 TLHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
............|.+ ++|+..+.+++.+ .|....+
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------------------------------------------nP~~~ta 69 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINE--------------------------------------------LASHYTI 69 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------------------------------------------CTTCHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------------------------------------------CcHHHHH
Confidence 333334444455555 6899999999984 5777889
Q ss_pred HHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQN--KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY----GKR---GKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 296 ~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~~ 366 (546)
|+..+.++...| ++++++..+..++.. +|....+|+..+.++ ... +++++++.++.++++.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-- 139 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-- 139 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--
Confidence 999999999999 999999999999987 455577899999888 777 8999999999999998
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------HHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYE--EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK------YKEA 438 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~------~~eA 438 (546)
+|....+|+..+.++...|.++ +++.++.++++. +|.+..++.+.+.+....|+ ++++
T Consensus 140 ------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 140 ------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 5888999999999999999999 999999999998 89999999999999999988 9999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN-REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~ 517 (546)
++++.+++...|.+. .+.+...+++...|.... ....+.+++.. +...+....++..++.+|...|+.++
T Consensus 206 l~~~~~aI~~~p~n~----SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 206 LNYVKDKIVKCPQNP----STWNYLLGIHERFDRSITQLEEFSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCCGGGGHHHHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCCCc----cHHHHHHHHHHhcCCChHHHHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 999999999854332 222333334444555333 33344444332 00135567789999999999999999
Q ss_pred HHHHHHHHHH
Q psy597 518 AEILYKQVLT 527 (546)
Q Consensus 518 A~~~~~~al~ 527 (546)
|+++|+.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999886
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-12 Score=107.10 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
++.+.++..+|..++..|+|++|+.+|++++.+ .|..+.++.++|.+|..+|+|++|+..|++++++.....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 567888999999999999999999999999998 455578999999999999999999999999999975542
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+..+.++.++|.++...|++++|+.+|++++..
T Consensus 77 -~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 -ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233556789999999999999999999999999987
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.9e-13 Score=115.53 Aligned_cols=116 Identities=22% Similarity=0.185 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
...|++++.+ +|....+++.+|.++...|++++|+.+|++++.+ +|..+.+++++|.+|...|+
T Consensus 7 ~~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~ 70 (148)
T 2vgx_A 7 GGTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQ 70 (148)
T ss_dssp CCSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhh
Confidence 3456666655 5889999999999999999999999999999998 88889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
+++|+..|++++.+ .|....+++++|.+|...|+
T Consensus 71 ~~~A~~~~~~al~l----------------------------------------------~p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 71 YDLAIHSYSYGAVM----------------------------------------------DIXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHHHHHHHH----------------------------------------------STTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc----------------------------------------------CCCCchHHHHHHHHHHHcCC
Confidence 99999999999986 45556778899999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy597 515 YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~ 532 (546)
+++|+.+|++++++.|++
T Consensus 105 ~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 105 LAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 999999999999988754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=132.62 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR----GKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 295 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~ 367 (546)
+++.+|.+|...| ++++|+.+|+++... .+..+..++++|.+|... +++++|+.+|+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----- 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----- 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----
Confidence 7899999999999 999999999999876 233356678999999766 79999999999986
Q ss_pred hcCCCChHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-----CHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALL-C--QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-----KYKEAE 439 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~-~--~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-----~~~eA~ 439 (546)
|..+.+++++|.+ + ...+++++|+.+|+++.+. . .+.++++||.+|. .| ++++|+
T Consensus 245 ------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 245 ------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------D--QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp ------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 2346678999998 4 4689999999999999864 2 4678999999998 66 999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK---- 511 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~---- 511 (546)
.+|+++. +. .......++.++.. ..++..|..+|.+|.+ .....+.++||.+|..
T Consensus 308 ~~~~~Aa---~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 308 AHFEKAV---GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HHHHTTT---TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTB
T ss_pred HHHHHHh---CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCC
Confidence 9999988 21 12334455555554 2378888888888764 2335678899999985
Q ss_pred cCCHHHHHHHHHHHHHHh
Q psy597 512 QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 512 ~g~~~~A~~~~~~al~~~ 529 (546)
..++.+|..+|++|.+..
T Consensus 371 ~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 468999999999987643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=115.04 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 314 NLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY 393 (546)
Q Consensus 314 ~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 393 (546)
..|++++.+ .|....+++.+|.++...|++++|+.+|++++.. .|....++.++|.++...|++
T Consensus 8 ~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~ 71 (148)
T 2vgx_A 8 GTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQY 71 (148)
T ss_dssp CSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhH
Confidence 345566544 6777899999999999999999999999999998 477888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++|+.+|++++.+ +|..+.+++++|.+|..+|++++|+..|++++.+.+.+
T Consensus 72 ~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 72 DLAIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999 78888899999999999999999999999999987653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-12 Score=109.81 Aligned_cols=142 Identities=23% Similarity=0.192 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
..+..+..+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 457789999999999999999999999999983 667889999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 413 ~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.|....++.++|.++...|++++|+.+|++++...+.
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----------------------------------------- 113 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH----------------------------------------- 113 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------------------------------
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------------------------------------
Confidence 7777889999999999999999999999999986322
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
++ .......++..+...|++++|+.++.++..+.+....
T Consensus 114 --~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 114 --DK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp --CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred --CH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 11 1223345566688899999999999999888865443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-12 Score=110.17 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...+..+..+|.++...|++++|+.+|.+++... |....++..+|.++...|++++|+.++.+++...
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---- 77 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 4567889999999999999999999999999873 4447789999999999999999999999999983
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK--NNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~--~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|....++.++|.++...|++++|+.+|++++.+ .|....++ ..++..+...|++++|+..+.++..
T Consensus 78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 667889999999999999999999999999998 44444455 4555558899999999999999888
Q ss_pred hhhhc
Q psy597 448 RAHER 452 (546)
Q Consensus 448 ~~~~~ 452 (546)
.....
T Consensus 146 ~~~~~ 150 (166)
T 1a17_A 146 VVDSL 150 (166)
T ss_dssp HHHHC
T ss_pred Hhccc
Confidence 76543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=118.11 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...++.+|.++...|++++|+.+|++++. + ...++.++|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45678999999999999999999999841 2 3568999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCC
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD 494 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 494 (546)
+|....++.++|.+|...|++++|+..|++++...+....... ... ....
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~--------------------~~~~ 116 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY----------KIL--------------------GLQF 116 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC----------GGG--------------------TBCC
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH----------HHh--------------------cccc
Confidence 7778899999999999999999999999999998665431110 000 0012
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 495 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 495 ~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|....++.++|.+|...|++++|+.+|++++++.|..
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 56677899999999999999999999999999988754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=136.78 Aligned_cols=221 Identities=11% Similarity=0.055 Sum_probs=173.3
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYAS-------QGRYE-------VAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKE 268 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~ 268 (546)
.........|..+.+|+.+|..+.. .|+++ +|+..|+++++.
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~------------------------ 315 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------------ 315 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH------------------------
Confidence 3444444567788999999999886 79987 778888777641
Q ss_pred hHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q psy597 269 SYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348 (546)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~ 348 (546)
..|....++..+|.++...|++++|...|++++.+. ++.+ ..+|..+|.++...
T Consensus 316 -------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~--~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 316 -------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDP--TLVYIQYMKFARRA 369 (530)
T ss_dssp -------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-----SSCH--HHHHHHHHHHHHHH
T ss_pred -------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-----ccCc--hHHHHHHHHHHHHh
Confidence 245667889999999999999999999999999862 2222 35899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL-CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 349 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
|++++|..+|.++++.. |.....+...+.+ +...|++++|..+|+++++. .|..+.++..++.
T Consensus 370 ~~~~~A~~~~~~Al~~~--------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--------~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHTCT--------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--------CCCCHHHHHHHHH
Confidence 99999999999998762 3333444455544 34699999999999999998 5666788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS-NVAKTKNNLA 506 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~-~~~~~~~~La 506 (546)
++...|++++|..+|++++...+. +| ....++...+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~-------------------------------------------~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSL-------------------------------------------PPEKSGEIWARFL 470 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCS-------------------------------------------CGGGCHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCC-------------------------------------------CHHHHHHHHHHHH
Confidence 999999999999999999875221 22 2234566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 507 SCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 507 ~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
......|+.+.+..++.++++..|+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 77778899999999999999988853
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-12 Score=105.24 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..+..+|..++..|++++|+..|.+++.+ .|....++.++|.++...|++++|+..|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 45678999999999999999999999999998 3445789999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
.|....++.++|.++...|++++|+.+|++++.+.... ++.|....++..++.+...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHHh
Confidence 47778899999999999999999999999999994332 1237777778778777654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=134.13 Aligned_cols=256 Identities=13% Similarity=0.059 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhh---hhHHHHHHHHHHHHhccC
Q psy597 214 RLRTLHNLVIQYASQG-----RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK---ESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~ 285 (546)
.+.+++.+|.++...| ++++|+.+|+++++. +... +...+...+.... .............
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~-A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~----- 136 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-----GEGN-TLIPLAMLYLQYPHSFPNVNAQQQISQWQ----- 136 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-----TCSS-CHHHHHHHHHHCGGGCTTCCHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-----CCHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----
Confidence 6678999999777776 889999999999872 1111 1111111111111 1111111111111
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---KYKEAEPLCKRAL 362 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al 362 (546)
.+..+.+++.+|.+|...+.++++............ ..+|. +++++|.+|...| ++++|+.+|+++.
T Consensus 137 ---~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 137 ---AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp ---HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 122356789999999999977666655443333221 12332 8999999999999 9999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-H--HHcCC
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQS-----KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC-Y--LKQGK 434 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~-y--~~~g~ 434 (546)
+.. +..+..++++|.+| ..| ++++|+.+|+++. +..+.++++||.+ | ...|+
T Consensus 207 ~~g--------~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 207 SRG--------TVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HTT--------CSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCC
T ss_pred HCC--------CHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCC
Confidence 873 66677779999998 455 7889999999885 2345688999999 4 57899
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc-----hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN-----KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
+++|+.+|+++.... .......++.++. .| ++..|..+|.+|. +..+.++++||.+|
T Consensus 267 ~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHH
Confidence 999999999998642 2234445555555 44 7777777776665 23457889999999
Q ss_pred HH----cCCHHHHHHHHHHHHHH
Q psy597 510 LK----QGKYKEAEILYKQVLTR 528 (546)
Q Consensus 510 ~~----~g~~~~A~~~~~~al~~ 528 (546)
.. ..++++|..+|+++.+.
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh
Confidence 87 44999999999999864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=122.44 Aligned_cols=141 Identities=19% Similarity=0.200 Sum_probs=112.2
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH----------AAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.+..+..+..+|..++..|+|++|+.+|.+++.+.+.. ++. .....++.++|.++...|++++|+.+|
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35567778889999999999999999999998875332 100 012478999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
.+++.+ .|....+++++|.++...|++++|+.+|++++.+ .|....++..++.++...++..++
T Consensus 112 ~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 112 SKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999998 3777889999999999999999999999999998 777888999999999999988888
Q ss_pred H-HHHHHHHH
Q psy597 439 E-ILYKQVLT 447 (546)
Q Consensus 439 ~-~~~~~al~ 447 (546)
. ..|...+.
T Consensus 176 ~~~~~~~~f~ 185 (198)
T 2fbn_A 176 DKLTFGGMFD 185 (198)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 7 45555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=117.89 Aligned_cols=141 Identities=18% Similarity=0.126 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
....++.+|.++...|++++|+..|++++. + .+.+++++|.+|...|++++|+.+|++++.+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 67 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------ 67 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 345688999999999999999999999851 1 25689999999999999999999999999983
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL--------GPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~--------~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
|....++.++|.++...|++++|+.+|++++++..... ....|....++.++|.+|...|++++|+.+|+
T Consensus 68 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 68 --KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77788999999999999999999999999999632110 00234567899999999999999999999999
Q ss_pred HHHHhhhh
Q psy597 444 QVLTRAHE 451 (546)
Q Consensus 444 ~al~~~~~ 451 (546)
+++...+.
T Consensus 146 ~al~~~p~ 153 (213)
T 1hh8_A 146 LATSMKSE 153 (213)
T ss_dssp HHHTTCCS
T ss_pred HHHHcCcc
Confidence 99998654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-12 Score=103.78 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
..+..+..+|..+...|++++|+.+|.+++.+. |....++.++|.++...|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 346789999999999999999999999999983 777899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 413 ~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+|....++.++|.+|...|++++|+..|++++.+.|+
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 7888899999999999999999999999999998643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.8e-13 Score=120.52 Aligned_cols=131 Identities=15% Similarity=0.031 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP-- 374 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-- 374 (546)
...+......|++++|.+.+...... .+..+..+..+|..+...|+|++|+.+|.+++.+.. ..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~ 74 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-----HTEEW 74 (198)
T ss_dssp --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-----TCTTC
T ss_pred cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----ccccc
Confidence 34456666778888888888766544 345588899999999999999999999999998752 112
Q ss_pred -----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 375 -----------DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 375 -----------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
....++.++|.++...|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 01478999999999999999999999999998 77788999999999999999999999999
Q ss_pred HHHHh
Q psy597 444 QVLTR 448 (546)
Q Consensus 444 ~al~~ 448 (546)
+++.+
T Consensus 147 ~al~~ 151 (198)
T 2fbn_A 147 KAASL 151 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-10 Score=112.32 Aligned_cols=204 Identities=11% Similarity=0.065 Sum_probs=163.4
Q ss_pred CChhHHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNK----------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--YKEAE 355 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--~~~A~ 355 (546)
..|....+|+..+.++...+. +.+++.++..++.. +|....+|+..+.++...|+ +++++
T Consensus 59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL 130 (331)
T 3dss_A 59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWAREL 130 (331)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHH
Confidence 467778889999999888776 67888888888876 56668899999999999994 99999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-- 432 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~-- 432 (546)
.++.++++. +|....+|+..+.+....|. +++++.++.++++. +|.+..+|++.+.++...
T Consensus 131 ~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 131 ELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhh
Confidence 999999998 58889999999999999999 59999999999998 899999999999999887
Q ss_pred ------------CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH-----Hhh-----------chhhHHHHHHHHHH
Q psy597 433 ------------GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD-----RQK-----------NKAKNREKYYQRAL 484 (546)
Q Consensus 433 ------------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~A~~~~~~Al 484 (546)
+.++++++++.+++...|.+ ..+|.| ... +.+.+++..+.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d---------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPND---------QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 56899999999999986654 333332 111 34556666666666
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhhh
Q psy597 485 EIYELKLGPDDSNVAKTKNNLASCYL---KQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~La~~y~---~~g~~~~A~~~~~~al~~~~~~ 532 (546)
++ .|+...++..++.+.. ..|..++...++.+.+++.|..
T Consensus 266 e~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 266 EL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred hh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 55 4555556665555443 3588899999999999988754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-12 Score=104.98 Aligned_cols=125 Identities=22% Similarity=0.326 Sum_probs=113.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....+.....++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4467888999999999999999999999999999976 34447789999999999999999999999999983
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
|....++.++|.++...|++++|+.+|++++.+ .|....++..++.++..+|+
T Consensus 81 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 --------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred --------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 667889999999999999999999999999998 78888899999999998875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=125.11 Aligned_cols=166 Identities=23% Similarity=0.198 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+..+..+|..+...|++++|+.+|.+++.. .|....++.++|.+|...|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567899999999999999999999999998 3777889999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH---------------------------
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD--------------------------- 467 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~--------------------------- 467 (546)
+|....+++++|.+|..+|++++|+..|++++.+.+...... ....+..
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 143 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF----GDDIPSALRIAKKKRWNSIEERRIHQESELHSYL 143 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC----CSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 788889999999999999999999999999999988653221 1111111
Q ss_pred --HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q psy597 468 --RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYKEAEILYKQVLTR 528 (546)
Q Consensus 468 --~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g~~~~A~~~~~~al~~ 528 (546)
...|+++.|...+.++++ . .|........++.++... +.+++|..+|.++.+.
T Consensus 144 ~~l~~~~~~~A~~~~~~al~-------~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 144 TRLIAAERERELEECQRNHE-------G-HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHTTTSGGGT-------T-TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHHHhhhc-------c-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 112333333333333333 2 455566667777777766 7788899999888664
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.4e-11 Score=130.85 Aligned_cols=237 Identities=13% Similarity=0.138 Sum_probs=140.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHH
Q psy597 221 LVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILA 300 (546)
Q Consensus 221 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 300 (546)
+|.++...|.|++|..+|+++- ....|...+...+..+.+..+.. .......+|+.+|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--------~~~~A~~VLie~i~nldrAiE~A--------------ervn~p~vWsqLA 1112 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--------VNTSAVQVLIEHIGNLDRAYEFA--------------ERCNEPAVWSQLA 1112 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--------CHHHHHHHHHHHHhhHHHHHHHH--------------HhcCCHHHHHHHH
Confidence 4899999999999999999873 22232222221222221111111 1224477899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----------
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL----------- 369 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------- 369 (546)
.++...|++++|+..|.++ + + ...|..+|.++...|+|++|+++|..+.+..+...
T Consensus 1113 KAql~~G~~kEAIdsYiKA---------d-D---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA---------D-D---PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc---------C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 9999999999999999876 1 1 55788899999999999999999998876531100
Q ss_pred -C--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 370 -G--------KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 370 -~--------~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
+ -+.+.. ..+.++|..+...|+|++|..+|.++ ..|..+|.+|.++|++++|++
T Consensus 1180 l~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHH
Confidence 0 000111 12334555555555555555555443 124445555555555555555
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.++++... ..+......+...+++..|..+... + ...+..+..++..|...|.+++|+.
T Consensus 1243 aarKA~n~---------~aWkev~~acve~~Ef~LA~~cgl~-I-----------iv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1243 GARKANST---------RTWKEVCFACVDGKEFRLAQMCGLH-I-----------VVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HHHHhCCH---------HHHHHHHHHHhhhhHHHHHHHHHHh-h-----------hcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554221 1122222223334444444333221 1 1123455688999999999999999
Q ss_pred HHHHHHHHhh
Q psy597 521 LYKQVLTRAH 530 (546)
Q Consensus 521 ~~~~al~~~~ 530 (546)
+++.++.+.+
T Consensus 1302 LlE~aL~Ler 1311 (1630)
T 1xi4_A 1302 MLEAALGLER 1311 (1630)
T ss_pred HHHHHhccCh
Confidence 9999987653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=9.3e-12 Score=103.31 Aligned_cols=124 Identities=27% Similarity=0.344 Sum_probs=112.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+.++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++.+++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 76 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-- 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--
Confidence 567788999999999999999999999999999873 3346789999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++
T Consensus 77 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 ------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 666788999999999999999999999999998 677778899999999999876
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-11 Score=103.18 Aligned_cols=119 Identities=22% Similarity=0.127 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
.+..+.++|..+...|+|++|+..|++++++...... ...|..+.+|.++|.++..+|+|++|+.+|++|++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3667899999999999999999999999999722100 001234569999999999999999999999999998666
Q ss_pred hcCCCChHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 410 KLGPDDSNVAKTK----NNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 410 ~~~~~~~~~~~~~----~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
.. .-+|+...+| +++|.++..+|++++|+..|++++.+.|++.
T Consensus 90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 53 4467788888 9999999999999999999999999988754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=135.11 Aligned_cols=128 Identities=19% Similarity=0.184 Sum_probs=108.6
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CChHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------EHPDVA 377 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 377 (546)
..+++++|+..|..++.. .|..+..+.++|.+++..|+|++|+.+|.+++.+....... ..+...
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 456777888888887766 45668899999999999999999999999999986211000 011237
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+++++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+..|++++.+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999 7888999999999999999999999999999986
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.2e-12 Score=103.90 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 329 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
...+....++..+|.++...|++++|+.+|++++.. .|....++.++|.++...|++++|+.+|++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 345677889999999999999999999999999987 3666889999999999999999999999999998
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++.++|.+|...|++++|+.+|++++..
T Consensus 80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6777889999999999999999999999999886
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-12 Score=106.03 Aligned_cols=119 Identities=21% Similarity=0.106 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG----PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~----~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.+..+.++|..++..|+|++|+..|++|+++...... ...|..+.+|.++|.++..+|+|++|+..|++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 5667889999999999999999999999999422100 001234569999999999999999999999999875
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK----NNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~----~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
|.+++++ +|....+| +++|.++..+|++++|+..|+++++
T Consensus 87 ----------------------------~n~~~e~--------~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 ----------------------------FNRRGEL--------NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ----------------------------HHHHCCT--------TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------hhccccC--------CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3333333 67778888 9999999999999999999999999
Q ss_pred Hhhhhc
Q psy597 528 RAHERE 533 (546)
Q Consensus 528 ~~~~~~ 533 (546)
+.|+..
T Consensus 131 l~p~d~ 136 (159)
T 2hr2_A 131 MIEERK 136 (159)
T ss_dssp HHHHCC
T ss_pred cCCCcH
Confidence 998754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=104.87 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
.|.....++.+|.++...|++++|+.+|++++.. +|....++.++|.++...|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 6777889999999999999999999999999988 4778889999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|..+.+++++|.+|...|++++|+.+|++++.+.|.+
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 78888899999999999999999999999999987654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=107.86 Aligned_cols=131 Identities=20% Similarity=0.124 Sum_probs=110.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG---EN-------HAAVAATLNNLAVLYGKRGKYKEAEPL 357 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~ 357 (546)
.....+..+..+|..++..|+|++|+..|.+++.+.+.... +. .|....++.++|.+|...|+|++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34567888999999999999999999999999998655321 11 455678999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHHHHcCC
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA-KTKNNLASCYLKQGK 434 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~-~~~~~La~~y~~~g~ 434 (546)
|.+++.+ +|....+++.+|.+|...|++++|+.+|++++.+ +|... .+...++.+....++
T Consensus 86 ~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 86 SSEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHH
Confidence 9999998 4888899999999999999999999999999999 77766 566677766655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.8e-12 Score=105.83 Aligned_cols=106 Identities=12% Similarity=0.039 Sum_probs=97.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....|.....++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.+.
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999999999987 45557889999999999999999999999999984
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
|....+++++|.++...|++++|+.+|++++.+.
T Consensus 83 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 83 --------INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp --------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777889999999999999999999999999983
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=101.19 Aligned_cols=103 Identities=22% Similarity=0.210 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 330 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
..+....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 356778899999999999999999999999999883 666888999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++..+|.++...|++++|+.+|++++..
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6667889999999999999999999999999886
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=107.96 Aligned_cols=104 Identities=21% Similarity=0.277 Sum_probs=96.3
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
...+..+..++.+|.+++..|+|++|+.+|++++.+. |....++.++|.+|...|++++|+.+|++++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-- 74 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 3567788999999999999999999999999999983 445789999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.|....+++++|.+|...|++++|+.+|++++++
T Consensus 75 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 75 ------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4777899999999999999999999999999998
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=106.48 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 330 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
+.+..+..+..+|.++...|+|++|+.+|++++.+. |....++.++|.+|...|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 456678899999999999999999999999999984 777899999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....+++++|.+|..+|++++|+.+|++++.+.+.+
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 78889999999999999999999999999999987654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-12 Score=133.42 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=118.9
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE-------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
.|..+..+..+|.+++..|+|++|+..|.+++.+.+..... ..+....+++++|.+|..+|+|++|+.+|.++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46778899999999999999999999999999986432000 02234689999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI- 440 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~- 440 (546)
+.+. |....+++++|.+|..+|++++|+.+|++++++ +|....++.+++.++...|++++|..
T Consensus 344 l~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 344 LGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 778899999999999999999999999999998 88888999999999999999998874
Q ss_pred HHHHHHHh
Q psy597 441 LYKQVLTR 448 (546)
Q Consensus 441 ~~~~al~~ 448 (546)
.|.+++..
T Consensus 408 ~~~~~f~k 415 (457)
T 1kt0_A 408 IYANMFKK 415 (457)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 45555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-11 Score=105.21 Aligned_cols=112 Identities=19% Similarity=0.100 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE----------HPDVAKQLNNLALLCQNQSKYEEVERYYQ 401 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 401 (546)
...+..+..+|..++..|+|++|+.+|.+++.+.......+ .|....++.++|.+|...|++++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34577899999999999999999999999999865432111 25667899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 402 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 402 ~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+++.+ +|..+.+++.+|.+|..+|++++|+..|++++.+.|.
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 99999 8888999999999999999999999999999998544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-12 Score=122.13 Aligned_cols=174 Identities=18% Similarity=0.103 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+..+..+|..++..|+|++|+..|.+++.. .|..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p~~ 37 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------------------------------------------NPLV 37 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CSCC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------CCcc
Confidence 34678999999999999999999999999984 4556
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.+++.+|.+|...|++++|+..|++++.+ .|....+++++|.+|...|++++|+.+|++++.+.......-
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhH
Confidence 788999999999999999999999999976 455578899999999999999999999999999874321100
Q ss_pred ChHH-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 373 HPDV-----------------------AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 373 ~~~~-----------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.... ..+...++.+ ..|++++|+..++++++. +|........++.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 110 GDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEG--------HEDDGHIRAQQACIE 179 (281)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHH
Confidence 0000 0111122222 257888888888888876 666667777777777
Q ss_pred HHc-CCHHHHHHHHHHHHHh
Q psy597 430 LKQ-GKYKEAEILYKQVLTR 448 (546)
Q Consensus 430 ~~~-g~~~eA~~~~~~al~~ 448 (546)
... +.+++|..+|.++...
T Consensus 180 ~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 180 AKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 766 7789999999888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-12 Score=110.24 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=108.8
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 303 YRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382 (546)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 382 (546)
+...|++++|+..+++++.. .|....++..+|.+|...|++++|+.+|++++.+. |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34678999999999999987 34446789999999999999999999999999986 566788999
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 383 LALL-CQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 383 la~~-~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|.+ +...|++ ++|+.+|++++.. .|....++.++|.+|...|++++|+.+|++++...+.+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999 8899999 9999999999998 77778899999999999999999999999999986543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-11 Score=115.55 Aligned_cols=234 Identities=8% Similarity=-0.030 Sum_probs=187.2
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 274 (546)
...++........-+|+...+|+..+.++...| ++++++.++..++..
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------------------------------ 98 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------------------------------ 98 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------------------------------
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------------------------------
Confidence 345666666666778999999999999999999 999999999999984
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVY----RDQ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~ 347 (546)
+|....+|+..+.++ ... +++++++.++.+++.. +|....+|...+.+...
T Consensus 99 --------------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~ 156 (306)
T 3dra_A 99 --------------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDT 156 (306)
T ss_dssp --------------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred --------------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence 566677888888888 666 7899999999999987 56668899999999999
Q ss_pred cCCHH--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 348 RGKYK--EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK------YEEVERYYQRALEIYELKLGPDDSNVA 419 (546)
Q Consensus 348 ~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~~~~~~~~~~~~~~ 419 (546)
.|.++ +++.++.++++. +|....+|...+.+....|. +++++.++.+++.+ +|...
T Consensus 157 l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~ 220 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNP 220 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCH
T ss_pred hcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCc
Confidence 99999 999999999988 58889999999999999988 99999999999999 89999
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHH-HHHHHcCCCCHH
Q psy597 420 KTKNNLASCYLKQGKYKEAE-ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE-IYELKLGPDDSN 497 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~~~~~~~~~~~~ 497 (546)
.+++.++.++...|+..+++ .++.+++..... ...........+.++...|+..+|...|+.+.. + +|.
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpi 291 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPI 291 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGG
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChH
Confidence 99999999999999865544 455555543210 111112233334446677888888888888775 3 777
Q ss_pred HHHHHHHHHH
Q psy597 498 VAKTKNNLAS 507 (546)
Q Consensus 498 ~~~~~~~La~ 507 (546)
....+...+.
T Consensus 292 r~~yW~~~~~ 301 (306)
T 3dra_A 292 RSNFWDYQIS 301 (306)
T ss_dssp GHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-12 Score=119.01 Aligned_cols=210 Identities=14% Similarity=0.006 Sum_probs=160.9
Q ss_pred CChhhHHHhhhcCCCchHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhH-HHhhHHHHHhhhh
Q psy597 196 TPPSQFAQQVNAGYEIPARLRTLHNL-------VIQYASQGRYEVAVPLCKQALEDLEKTSGKYEA-AETLEDCALRSRK 267 (546)
Q Consensus 196 ~~~~~~~~~~~~~~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-a~~~~~~~l~~~~ 267 (546)
.+..+...+......+|..+.+|..+ +.++...+++.+++..+.+++.+.+...+.... .-.+
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y--------- 91 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY--------- 91 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT---------
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc---------
Confidence 34556667777778889999999999 899999999999999999998865554311000 0000
Q ss_pred hhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy597 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347 (546)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~ 347 (546)
......-.....+...++.++...|+|++|.+.|..++.. .|... ..+.+|.++..
T Consensus 92 ---------------~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 92 ---------------GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp ---------------CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred ---------------cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence 0000001123556777899999999999999999888753 45555 88999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNL 425 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~L 425 (546)
.|+|++|+.+|+++... + +|. ...+++++|.++..+|++++|+.+|++++.. +..|. ...+.+++
T Consensus 148 ~~r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------PAGEACARAIAWYL 214 (282)
T ss_dssp TTCHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHH
Confidence 99999999999877554 1 233 3568999999999999999999999999742 32255 77899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 426 ASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 426 a~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|.++..+|+.++|...|++++...|.
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999997553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-12 Score=110.09 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=104.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
+...|++++|+..+++++... |....++..+|.+|...|++++|+.+|++++.+ .|....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 346789999999999999883 677789999999999999999999999999998 5556778999
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q psy597 425 LASC-YLKQGKY--KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT 501 (546)
Q Consensus 425 La~~-y~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 501 (546)
+|.+ |...|++ ++|+.+|++++.. .|....+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~----------------------------------------------~p~~~~~ 117 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL----------------------------------------------DSNEITA 117 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH----------------------------------------------CTTCHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh----------------------------------------------CCCcHHH
Confidence 9999 8899998 9999999998875 4445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 502 KNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 502 ~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
+..+|.+|...|++++|+.+|+++++..|..
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 8889999999999999999999999877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.9e-11 Score=96.35 Aligned_cols=120 Identities=36% Similarity=0.482 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....+++.+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 73 (125)
T 1na0_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---- 73 (125)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----
Confidence 3457789999999999999999999999999873 3336789999999999999999999999999873
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|
T Consensus 74 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 ----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred ----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 566778999999999999999999999999998 7777888999999987765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-11 Score=100.57 Aligned_cols=105 Identities=27% Similarity=0.197 Sum_probs=94.6
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.+..+..++.+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++.+.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--- 73 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--- 73 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---
Confidence 45567889999999999999999999999999983 4447789999999999999999999999999983
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
|....++.++|.++...|++++|+.+|++++.+...
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 777889999999999999999999999999998433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=95.65 Aligned_cols=99 Identities=39% Similarity=0.562 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
...++..+|.++...|++++|+.+|.+++... |....++..+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 36789999999999999999999999999873 566778999999999999999999999999988
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++..+|.+|...|++++|+.+|++++..
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5666788999999999999999999999999876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-10 Score=122.84 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALED--------LEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
..+.+|+.+|.++...|++++|+..|.++-.. +-...|+++.+..++..+...
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~------------------- 1163 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK------------------- 1163 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------
Confidence 34678999999999999999999999775110 000011222222222211110
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
..+.. +-..+|.+|.+.+++++ ++.|.+ .+. ...+..+|..+...|+|++|..+|.++
T Consensus 1164 ---~~e~~--Idt~LafaYAKl~rlee-le~fI~------------~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1164 ---ARESY--VETELIFALAKTNRLAE-LEEFIN------------GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred ---ccccc--ccHHHHHHHHhhcCHHH-HHHHHh------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 00000 01125566666665553 222211 112 235667999999999999999999985
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HhcCCCChHHHHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE-----------------LKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~-----------------~~~~~~~~~~~~~~~~La~ 427 (546)
..|..+|.++...|++++|++.+++|....- ...+-.....+..+..++.
T Consensus 1222 -------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 -------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELIN 1288 (1630)
T ss_pred -------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHH
Confidence 2567899999999999999999998854310 0000001113345567888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
.|...|.|++|+.+++.++.+.+.+. ......+.. ...-++..++...|...+.+-.-. ..-.....|..+
T Consensus 1289 yYe~~G~feEAI~LlE~aL~LeraH~----gmftELaiLyaKy~peklmEhlk~f~~rini~k~~---r~~e~~~lW~el 1361 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERAHM----GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAAEQAHLWAEL 1361 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChhHh----HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh---HHHHHHHHHHHH
Confidence 99999999999999999987642210 111111222 233455556666666555441100 012567788899
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q psy597 506 ASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 506 a~~y~~~g~~~~A~~~~~~ 524 (546)
..+|.+-|+++.|....-.
T Consensus 1362 v~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1362 VFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHhcccHHHHHHHHHh
Confidence 9999999999999854443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-12 Score=129.26 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+.+|..+|.++...|++++|+..|.++-. ..
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika~D-------------------------------------------------~~ 62 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKADD-------------------------------------------------PS 62 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------------HH
Confidence 35999999999999999999999965421 22
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
.+...+..+...|++++|+.+++.+.+.. +. +.+...++.+|.+.|++.++..++.. |
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------p 120 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------P 120 (449)
T ss_dssp -------------------------------------------------------CHHHHTTTTTC-------------C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------C
Confidence 45666667777888888888888777541 11 45566788888888888887777641 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
.. .++.++|..|...|+|++|..+|.++ ..+..+|.++.++|+|++|++.|+++...
T Consensus 121 n~-~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~------ 177 (449)
T 1b89_A 121 NN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST------ 177 (449)
T ss_dssp -----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH------
T ss_pred cH-HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc------
Confidence 22 37888888888888888888888755 24677888888888888888888887321
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
..+......+...|++..|..+... +. .+|.. ...++.+|.+.|++++|+.+++.++.+.
T Consensus 178 ---~~Wk~v~~aCv~~~ef~lA~~~~l~-L~--------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 178 ---RTWKEVCFACVDGKEFRLAQMCGLH-IV--------VHADE---LEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHTTTT-TT--------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred ---hhHHHHHHHHHHcCcHHHHHHHHHH-HH--------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 2223334456677777777544332 11 14444 3357778888888888888888887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=96.18 Aligned_cols=125 Identities=15% Similarity=0.245 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..++.+|.++...|++++|+.+|.+++... |....++..+|.++...|++++|+.++++++...... +
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 456789999999999999999999999999873 3346789999999999999999999999999987432 1
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
.+.+....++.++|.++...|++++|+.+|++++.+ .| .......++.+....+
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHH
Confidence 222333889999999999999999999999999997 44 2456666776665443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.7e-11 Score=98.51 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 415 (546)
..++.+|..+...|++++|+..|++++.. .|....+++.+|.++...|++++|+.+|++++++ +
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 35788999999999999999999999998 4888999999999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 416 ~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++.++|.+|...|++++|+..|++++...|.
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 888889999999999999999999999999987554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.4e-11 Score=98.88 Aligned_cols=105 Identities=28% Similarity=0.260 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+..+..+..+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 3447789999999999999999999999999983 777889999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....++.++|.+|...|++++|+..|++++...+..
T Consensus 73 ---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 73 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 77888899999999999999999999999999987763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=110.86 Aligned_cols=240 Identities=10% Similarity=0.051 Sum_probs=185.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|....++..+.......+..++|+.++.+++.+ .|
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------------------------------------------nP 85 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------------------------------------------NP 85 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------------------------------------------CT
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------------------------------------Cc
Confidence 3666777777777777777888999999999984 57
Q ss_pred hHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQN-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-G-KYKEAEPLCKRALEIREK 367 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~ 367 (546)
....+|+..+.++...| .+++++..+..++.. +|....+|+..+.++... + ++++++.++.++++.
T Consensus 86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--- 154 (349)
T 3q7a_A 86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--- 154 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS---
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh---
Confidence 77889999999999999 599999999999976 455688999999999998 8 999999999999977
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-----
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYE--------EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK----- 434 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~--------eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~----- 434 (546)
+|....+|...+.+....|.++ +++.++.++++. +|.+..++++.+.++...++
T Consensus 155 -----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 155 -----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred -----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccch
Confidence 5888999999999999998888 999999999998 89999999999999999987
Q ss_pred --HHHHHHHHHHHHHhhhhcccCcccCCChhhHHH-----HhhchhhH------------HHH-HHHHHHHHHHHHcCC-
Q psy597 435 --YKEAEILYKQVLTRAHEREFGACDGDNKPIWQD-----RQKNKAKN------------REK-YYQRALEIYELKLGP- 493 (546)
Q Consensus 435 --~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------A~~-~~~~Al~~~~~~~~~- 493 (546)
++++++++.+++...|. +..+|.+ ...|.... .+. .+.............
T Consensus 222 ~~~~eELe~~~~aI~~~P~---------n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH---------NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred HHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 79999999999998554 3344432 22222100 000 011111111111111
Q ss_pred ----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 494 ----DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 494 ----~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..+....++..|+.+|...|+.++|.++++...+
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1135667889999999999999999999998653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=115.22 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTL--------GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
..+..+..+|..++..|+|++|+..|++++.+.+... ....|....++.++|.+|...|++++|+.+|++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3567799999999999999999999999999655420 01356778999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
++ .|....+++++|.+|...|++++|+.+|++++++ .|....++..++.++...++++++...
T Consensus 301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 301 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 4778899999999999999999999999999999 777788899999999999988887643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-10 Score=95.24 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
.++.+|.++...|++++|+..|++++... ++++....+++.+|.++...|++++|+.+|++++... ++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 47889999999999999999999999874 5556666899999999999999999999999999984 3344
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
....+++.+|.++...|++++|+.+|++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999998
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-11 Score=97.24 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~ 457 (546)
..++.+|..+...|++++|+..|++++.. +|..+.+++.+|.++...|++++|+..|++++.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------- 80 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------- 80 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 35788999999999999999999999999 8888999999999999999999999999999986
Q ss_pred cCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 458 DGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.|....++..+|.+|...|++++|+.+|++++++.|.
T Consensus 81 -------------------------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 81 -------------------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp -------------------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 5666778899999999999999999999999987764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-10 Score=93.15 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++.+|..+...|++++|+..|++++... |....++..+|.++...|++++|+.++++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------ 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------
Confidence 35678999999999999999999999999873 3346789999999999999999999999999983
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
|....++.++|.++...|++++|+.+|+++++. .|....++..++.+.
T Consensus 69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 667889999999999999999999999999987 666677777777764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=119.13 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHHHHHcCCHH
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA-----------------KQLNNLALLCQNQSKYE 394 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~ 394 (546)
+..+..+..+|..++..|+|++|+.+|.+++.+. |... .+++++|.+|...|+++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3447789999999999999999999999999884 4433 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhh
Q psy597 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAK 474 (546)
Q Consensus 395 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (546)
+|+.+|++++.+ +|....+++++|.+|..+|++++|+..|++++.+
T Consensus 248 ~A~~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-------------------------- 293 (338)
T 2if4_A 248 EAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-------------------------- 293 (338)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------
Confidence 999999999998 7888899999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 475 NREKYYQRALEIYELKLGPDDSNVAKTKNNLASC-YLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 475 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~-y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.|....++..++.+ ....+..+++...|.+++...|.+.
T Consensus 294 --------------------~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 294 --------------------APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------------------------------------------------
T ss_pred --------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 34445566667776 3445677788888888888776544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.4e-12 Score=130.98 Aligned_cols=180 Identities=19% Similarity=0.156 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+..+|..+...|+|++|+.+|+++++. .|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------------------------------------------~p~ 38 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------------------------------------------NPS 38 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------------------------------------------CTT
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------------------------------CCc
Confidence 566777888999999999999999999999984 455
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.++..+|.+|...|++++|+.+|++++++ +|....+++++|.+|...|++++|+.+|++++++.
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------ 104 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK------ 104 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 6788999999999999999999999999987 45557899999999999999999999999999983
Q ss_pred CChHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHHHHHhcCCCChH---HHHHHHHHHHHHHHcCCH
Q psy597 372 EHPDVAKQLNNLALL--CQNQSKYEEVERYYQ-----------RALEIYELKLGPDDSN---VAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 372 ~~~~~~~~~~~la~~--~~~~g~~~eA~~~~~-----------~al~~~~~~~~~~~~~---~~~~~~~La~~y~~~g~~ 435 (546)
|....++.+++.+ +...|++++|+..++ +++.+.....++..+. .......+...+...+..
T Consensus 105 --p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l 182 (477)
T 1wao_1 105 --PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKL 182 (477)
T ss_dssp --TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCC
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCC
Confidence 5556677788887 888999999999999 6665533333333332 223333444555444443
Q ss_pred --HHHHHHHHHHHHhhhh
Q psy597 436 --KEAEILYKQVLTRAHE 451 (546)
Q Consensus 436 --~eA~~~~~~al~~~~~ 451 (546)
..+..++.++..+...
T Consensus 183 ~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 183 HRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 4455577777666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-10 Score=92.37 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
..++.+|.+++..|+|++|+..|+++++. .++++....+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------------------------------~p~~~~~~~~ 41 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----------------------------------------YPNGVYTPNA 41 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------CSSSTTHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------------------------------------CCCCcccHHH
Confidence 35788999999999999999999999885 4456666789
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
++.+|.++...|++++|+.+|++++... ++++....+++.+|.++...|++++|+.+|++++...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999874 4455557889999999999999999999999999885
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-10 Score=107.20 Aligned_cols=230 Identities=9% Similarity=-0.055 Sum_probs=179.5
Q ss_pred hhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhh
Q psy597 198 PSQFAQQVNAGYEIPARLRTLHNLVIQYASQGR----------YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267 (546)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~ 267 (546)
..++.........+|....+|+..+.+....|. +++++.++..++.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------------ 102 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------------ 102 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------------
Confidence 345666666777788899999999999887766 5667777777766
Q ss_pred hhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhc--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy597 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNK--YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY 345 (546)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~ 345 (546)
.+|....+|+..+.++...|+ +++++.++.+++.. +|....+|...+.+.
T Consensus 103 --------------------~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl 154 (331)
T 3dss_A 103 --------------------VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVA 154 (331)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred --------------------hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 357778889999999999884 89999999999988 566688999999999
Q ss_pred HHcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHh
Q psy597 346 GKRGK-YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ--------------SKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 346 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~~~~~ 410 (546)
...|. +++++.++.++++. +|....+|++.+.++... +.+++++.++.+++.+
T Consensus 155 ~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---- 222 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---- 222 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH----
T ss_pred HHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh----
Confidence 99999 69999999999988 588899999999998887 5689999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH--H---hhchhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQ-----------GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD--R---QKNKAK 474 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~-----------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~ 474 (546)
+|....+|+.+..++... +.++++++.+.+++...|+... .....+. . ..+...
T Consensus 223 ----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w------~l~~~~~~~~~~~~~~~~~ 292 (331)
T 3dss_A 223 ----DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW------CLLTIILLMRALDPLLYEK 292 (331)
T ss_dssp ----STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHCTTTTHH
T ss_pred ----CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch------HHHHHHHHHHhhcccccHH
Confidence 888888898776666655 4588999999999998775421 1111111 1 234455
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 475 NREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 475 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
+....+.+.+++ +|.....|..++.-+
T Consensus 293 ~~~~~l~~l~~~--------Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 293 ETLQYFSTLKAV--------DPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHH--------CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CcchhhHHHHHHHHH
Confidence 666777777776 777776666665544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-10 Score=90.55 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+..+..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 5678999999999999999999999999883 666889999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
.|....++.++|.++...|++++|..+|++++...
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 67778899999999999999999999999999863
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=113.27 Aligned_cols=106 Identities=19% Similarity=0.136 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL--------GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+..+..+|..+...|+|++|+.+|++++++..... ....|....++.++|.+|..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999654310 0024778899999999999999999999999999998
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+|..+.+++++|.+|..+|++++|+..|++++++
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999986
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.8e-10 Score=97.93 Aligned_cols=122 Identities=16% Similarity=0.072 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++.+|..+...|++++|+.+|++++... ++++....++.++|.+|...|++++|+.+|++++...
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 95 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-- 95 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--
Confidence 345678889999999999999999999999999763 3344458899999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
|....++.++|.++...|++++|+.+|++++.+ .|....++..++.+..
T Consensus 96 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 ------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG 144 (148)
T ss_dssp ------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred ------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence 666888999999999999999999999999998 6666666777766643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-11 Score=118.46 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC-CC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG-EN--------HAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
+..+..+..+|..++..|+|++|+..|.+++.+.+.... .. ......+++++|.+|...|+|++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456788999999999999999999999999988422100 00 000114899999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHcCCHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC-YLKQGKYKEAE 439 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~-y~~~g~~~eA~ 439 (546)
++.+ +|....+++++|.+|...|++++|+.+|++++++ .|....++.+++.+ ....+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 4778899999999999999999999999999998 78888899999988 44567788899
Q ss_pred HHHHHHHHhhhhc
Q psy597 440 ILYKQVLTRAHER 452 (546)
Q Consensus 440 ~~~~~al~~~~~~ 452 (546)
..|.+++...+.+
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 9999999876654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-12 Score=131.60 Aligned_cols=130 Identities=19% Similarity=0.209 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+..+..+..+|.++...|++++|+.+|++++++ .|....++.++|.+|...|++++|+.+|++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 445666788899999999999999999999998 4555889999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC--YLKQGKYKEAEILYK 443 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~--y~~~g~~~eA~~~~~ 443 (546)
+|....+++++|.+|..+|++++|+.+|++++++ .|....++.+++.+ +..+|++++|+..++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4778889999999999999999999999999998 66666778888888 889999999999999
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-10 Score=93.75 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
.+.++..+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++...... ++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 46789999999999999999999999999883 6667889999999999999999999999999985432 12
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+.+....++.++|.+|...|++++|+.+|++++...
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 223338899999999999999999999999999863
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.5e-10 Score=94.44 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=101.1
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|..+..++.+|..++..|+|++|+.+|+++++. .+++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----------------------------------------~~~~ 61 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----------------------------------------DATP 61 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----------------------------------------CCCH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------------------------------------cccc
Confidence 34567789999999999999999999999999873 2233
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+....++..+|.+|...|++++|+.++++++... |....+++.+|.++...|++++|+.+|++++.+.
T Consensus 62 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 129 (148)
T 2dba_A 62 QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE---- 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 3458899999999999999999999999999873 3337789999999999999999999999999984
Q ss_pred CCCChHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~ 387 (546)
|....++..++.+.
T Consensus 130 ----p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 130 ----PKNKVFQEALRNIS 143 (148)
T ss_dssp ----SSCHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHH
Confidence 55555666666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-09 Score=100.91 Aligned_cols=179 Identities=13% Similarity=0.012 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..++..+|.++...|++++|+..+.+.+.. ...+....++..++.++..+|+++.|.+.++++.+..
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~------- 166 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI------- 166 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 344579999999999999999999998653 1113668889999999999999999999999987773
Q ss_pred Ch------HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 373 HP------DVAKQLNNLALLCQNQS--KYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 373 ~~------~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
| +.......-|++....| ++.+|..+|+++.+. .|. ....+.+ ++..+|++++|...+
T Consensus 167 -~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 167 -EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred -ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 4 33334444455566666 999999999997654 333 3334444 899999999999999
Q ss_pred HHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 443 KQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 443 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
+.+++..|+-... .. . .|..+.++.+++.+....|+ +|.+++
T Consensus 235 ~~l~~~~p~~~~k--------------------------~~--~--------~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 235 ELLLSDYYSVEQK--------------------------EN--A--------VLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp HHHHSHHHHTTTC--------------------------HH--H--------HSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred HHHHHhccccccc--------------------------cc--C--------CCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 9777653321000 00 0 25567788888888888887 888999
Q ss_pred HHHHHHhhhhcc
Q psy597 523 KQVLTRAHEREF 534 (546)
Q Consensus 523 ~~al~~~~~~~~ 534 (546)
+++.+..|+.++
T Consensus 277 ~qL~~~~P~hp~ 288 (310)
T 3mv2_B 277 NQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHTTCCCHH
T ss_pred HHHHHhCCCChH
Confidence 999988877654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=6.9e-09 Score=98.74 Aligned_cols=182 Identities=15% Similarity=0.073 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
..++..+|.++...|++++|+.++.+++. ....+....
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~------------------------------------------~~~~~~~le 137 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGID------------------------------------------NDEAEGTTE 137 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------------------------------SSCSTTHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhc------------------------------------------cCCCcCcHH
Confidence 34457999999999999999999999876 112247888
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
++..++.++...|+.+.|.+.++++.+..+... .......+...-|.+....| ++.+|..+|+++....
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------- 208 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------- 208 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-------
Confidence 999999999999999999999999877621000 00122333333355566666 9999999999976553
Q ss_pred ChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HPD--VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD--DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~--~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|. ....+.+ ++..+|++++|...++.+++.+-.....+ +|..+.++.|++.+...+|+ +|.+++.++.+.
T Consensus 209 -p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 -PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp -CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred -CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 43 3334444 89999999999999997776632110000 26688899999999999998 899999999998
Q ss_pred hhhcc
Q psy597 449 AHERE 453 (546)
Q Consensus 449 ~~~~~ 453 (546)
.|+++
T Consensus 283 ~P~hp 287 (310)
T 3mv2_B 283 DHEHA 287 (310)
T ss_dssp TCCCH
T ss_pred CCCCh
Confidence 76654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=93.66 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
..++..+|.++...|++++|+.+|++++... |....++.++|.++...|++++|+.+|++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 5568899999999999999999999999983 666778999999999999999999999999987
Q ss_pred ChH--HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhh
Q psy597 415 DSN--VAKTKNNLASCYLKQ-GKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 415 ~~~--~~~~~~~La~~y~~~-g~~~eA~~~~~~al~~~~~ 451 (546)
.|. ...++.++|.++... |++++|+.++++++...+.
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 566 778999999999999 9999999999999987553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-10 Score=92.51 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=80.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
..|++++|+.+|++++++. .++|....++.++|.+|...|++++|+.+|++++++ .|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 4689999999999999861 223888999999999999999999999999999999 788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.+|...|++++|+..|++++...+.+
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999986543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.05 E-value=9.6e-11 Score=116.45 Aligned_cols=241 Identities=14% Similarity=0.164 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.++..+..++..+...|+|++|+.+++.+.+..+... .+........-+....+. ..+. ..|..
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~--i~~~Li~~Y~Klg~l~e~----------e~f~----~~pn~ 122 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAEL----------EEFI----NGPNN 122 (449)
T ss_dssp ----------------------------------------------------CHHHH----------TTTT----TCC--
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccch--hHHHHHHHHHHhCCHHHH----------HHHH----cCCcH
Confidence 3556888889999999999999999998887532211 000000000001111000 0111 12322
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
.++..+|..+...|+|++|..+|.++ ..+..+|.++..+|+|++|++.++++.
T Consensus 123 -~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~---------- 175 (449)
T 1b89_A 123 -AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN---------- 175 (449)
T ss_dssp ---------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------
Confidence 48999999999999999999999975 258899999999999999999999982
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
...+|..++.+|...|+++.|..+..... . +|... ..++.+|.+.|++++|+.+++.++...+.+
T Consensus 176 ---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~--------~ad~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 176 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-V--------HADEL---EELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T--------CHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred ---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-h--------CHhhH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 24567888999999999999977766521 2 55553 358899999999999999999999763221
Q ss_pred ccCcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDS-----NVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 453 ~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~-----~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
......++.. ....++..+.++.|...+.+ ++ .....|..+.-+|...++|+.|....-
T Consensus 241 ----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--------~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 241 ----MGMFTELAILYSKFKPQKMREHLELFWSRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--------HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 0111111222 22334555555555544444 23 345678899999999999999987543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=92.86 Aligned_cols=104 Identities=18% Similarity=0.161 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|....++..+|.++...|++++|+.+|++++++ .|....++.++|.++...|++++|+.+|++++..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 69 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV----- 69 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 444567889999999999999999999999998 6667788999999999999999999999999875
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQ-GKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~--~~~~~~~La~~y~~~-g~~~~A~~~~~~al~~~~ 530 (546)
.|. ...++..+|.++... |++++|+.++++++...|
T Consensus 70 -----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 70 -----------------------------------------IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp -----------------------------------------SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred -----------------------------------------CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 233 466889999999999 999999999999998765
Q ss_pred h
Q psy597 531 E 531 (546)
Q Consensus 531 ~ 531 (546)
.
T Consensus 109 ~ 109 (112)
T 2kck_A 109 H 109 (112)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-09 Score=112.61 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=149.3
Q ss_pred ChhHHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNK----------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG--KYKEAEP 356 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g--~~~~A~~ 356 (546)
.|....+|+..+.++...|+ +++++..+++++.. +|....+|+..+.++...| ++++++.
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~ 130 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELE 130 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccccHHHHHH
Confidence 67778899999999999998 99999999999987 5666889999999999999 7799999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
++.++++. +|....+|+..+.++...| .+++++.++.++++. +|....+|++.+.++...++.
T Consensus 131 ~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 131 LCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhccc
Confidence 99999998 5888999999999999999 999999999999988 888899999999999886443
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
.++. ..+ ....+.+++++.++.+|+.+ .|....+|+.++.++...+++
T Consensus 195 ~~~~-------------~~~-----------~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 195 PDSG-------------PQG-----------RLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSS-------------SCC-----------SSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccc-------------ccc-----------cccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCCc
Confidence 1100 000 00123455566666666665 677778899999999988886
Q ss_pred HH------------HHHHHHHHHHHhhh
Q psy597 516 KE------------AEILYKQVLTRAHE 531 (546)
Q Consensus 516 ~~------------A~~~~~~al~~~~~ 531 (546)
++ |+.+|.+++.+.|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 243 DVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cceeeeeeccCCceEEEEeccceecccc
Confidence 66 55556666665544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-10 Score=92.67 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=76.7
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..|++++|+.+|++++.+. .++|....++.++|.+|...|++++|+.+|+++++.. |....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHH
Confidence 4689999999999999751 2247778999999999999999999999999999984 77788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.++...|++++|+.+|++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-10 Score=93.88 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=80.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY----------EEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
+.+.|++|+..+++++++ .|..+.+++++|.++...+++ ++|+..|++|+++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 556899999999999999 488999999999999998875 5999999999999 99
Q ss_pred HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhh
Q psy597 417 NVAKTKNNLASCYLKQG-----------KYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g-----------~~~eA~~~~~~al~~~~~ 451 (546)
....+++++|.+|..+| ++++|+.+|++++++.|+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999885 899999999999988654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=91.08 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCC
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY----------KEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+.+.|++|+..+++++.+ .|..+.+++++|.++...+++ ++|+..|++++++ .
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3567899999999999998 566688999999999999875 5999999999999 4
Q ss_pred hHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQS-----------KYEEVERYYQRALEI 406 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g-----------~~~eA~~~~~~al~~ 406 (546)
|....+++++|.+|..+| ++++|+.+|++|+++
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 889999999999999875 899999999999999
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=98.13 Aligned_cols=171 Identities=10% Similarity=0.002 Sum_probs=150.2
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 275 (546)
...++.........+|....+|+..+.++...| .+++++.++..++.
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-------------------------------- 117 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-------------------------------- 117 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--------------------------------
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------------------------------
Confidence 345666666667778999999999999999999 59999999999997
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHHh-h-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH-
Q psy597 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQ-N-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK- 352 (546)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~- 352 (546)
.+|....+|+..+.++... + ++++++.++.+++.. +|....+|...+.+....|.++
T Consensus 118 ------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 118 ------------QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp ------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTC
T ss_pred ------------hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccc
Confidence 5678888999999999998 7 899999999999865 5666889999999999988888
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 353 -------EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-------YEEVERYYQRALEIYELKLGPDDSNV 418 (546)
Q Consensus 353 -------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~eA~~~~~~al~~~~~~~~~~~~~~ 418 (546)
+++.++.++++. +|....+|++.+.++...+. +++++.++.+++.+ +|..
T Consensus 178 ~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n 241 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHN 241 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred cchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCC
Confidence 999999999998 58889999999999999987 79999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCCH
Q psy597 419 AKTKNNLASCYLKQGKY 435 (546)
Q Consensus 419 ~~~~~~La~~y~~~g~~ 435 (546)
..+++.+..++...|+.
T Consensus 242 ~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 242 VSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999888875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=78.74 Aligned_cols=87 Identities=39% Similarity=0.541 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++....++..+|.++...|++++|+.+|++++... |....++.++|.++...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 34567889999999999999999999999999883 666788999999999999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHHHHcC
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g 433 (546)
+|....++.++|.++...|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 7778889999999998765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-08 Score=107.64 Aligned_cols=158 Identities=10% Similarity=0.034 Sum_probs=136.2
Q ss_pred HhhcH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCC
Q psy597 305 DQNKY-KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK----------YKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 305 ~~g~~-~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..|++ ++|+..+.+++.+ .|....+|+..+.++...|+ +++++.++.+++.. +
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~ 103 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N 103 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence 33443 6789999999988 56668899999999999998 99999999999988 5
Q ss_pred hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQS--KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-KYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-~~~eA~~~~~~al~~~~ 450 (546)
|....+|+..+.++...| ++++++.++.+++++ +|....+|...+.+....| .++++++++.+++..
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 889999999999999999 779999999999999 8999999999999999999 899999998888875
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc--------------CCHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--------------GKYK 516 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~--------------g~~~ 516 (546)
+|....+|...+.++... +.++
T Consensus 174 --------------------------------------------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ 209 (567)
T 1dce_A 174 --------------------------------------------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209 (567)
T ss_dssp --------------------------------------------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHH
T ss_pred --------------------------------------------CCCCccHHHHHHHHHHhhcccccccccccccHHHHH
Confidence 455566777777776664 5689
Q ss_pred HHHHHHHHHHHHhhhh
Q psy597 517 EAEILYKQVLTRAHER 532 (546)
Q Consensus 517 ~A~~~~~~al~~~~~~ 532 (546)
+|++++.+|+.+.|++
T Consensus 210 eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 210 KELELVQNAFFTDPND 225 (567)
T ss_dssp HHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999999987654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-09 Score=87.67 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+.++..+|.++...|++++|+.+|++++.+. |....++.++|.++...|++++|+.+|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 5678999999999999999999999999983 777889999999999999999999999999987
Q ss_pred ChHH------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 415 DSNV------AKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 415 ~~~~------~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
.|.. ..++..+|.++...|+++.|+..+++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 4444 78899999999999988877665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-08 Score=75.92 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
++....++..+|.++...|++++|+.+|++++.+ .|....++.++|.+|...|++++|+.+|++++..
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999998 6777889999999999999999999999999886
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-07 Score=98.90 Aligned_cols=226 Identities=9% Similarity=0.053 Sum_probs=158.9
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAV-PLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
.......|..+..|+..+..+...|+.++|. ..|.+|+..
T Consensus 333 e~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------------------------------------- 373 (679)
T 4e6h_A 333 MQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------------------------------------- 373 (679)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---------------------------------------
Confidence 3344455667788888888888889888887 889888873
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC------CC--------CHHHHHHHHHHHHHHHHcC
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG------EN--------HAAVAATLNNLAVLYGKRG 349 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g------~~--------~~~~~~~~~~la~~~~~~g 349 (546)
.|.....+...+.+....|+++.|...|++++........ +. ......+|...+....+.|
T Consensus 374 -----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 374 -----IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 2334566788899999999999999999999986431100 11 0124557888888888889
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 350 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
..+.|..+|.+|+... .+....++...|.+....+ +++.|...|+++++.+ |.....+...+..
T Consensus 449 ~l~~AR~vf~~A~~~~-------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~f 513 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLK-------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDF 513 (679)
T ss_dssp CHHHHHHHHHHHHHTG-------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHH
Confidence 9999999999998751 0112344556666666655 4899999999999973 3334455667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 429 y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
....|+.+.|..+|++++...++ .......+......
T Consensus 514 e~~~~~~~~AR~lferal~~~~~-------------------------------------------~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISD-------------------------------------------SHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSS-------------------------------------------TTHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCC-------------------------------------------HHHHHHHHHHHHHH
Confidence 88889999999999998875321 01233445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 509 YLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 509 y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
-...|+.+.+...++++.+.+|+.
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Confidence 666677777777777777766653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-09 Score=85.04 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
.+..+..+|.++...|++++|+.+|++++.+ .|..+.++.++|.+|..+|++++|+..|++++.+.+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE-- 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc--
Confidence 3567899999999999999999999999998 777788999999999999999999999999998744321
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
+......++..+|.++...|+++.|+..++
T Consensus 73 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 73 --------------------------------------HVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp --------------------------------------SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 011235677888888888887777665544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-08 Score=80.09 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchh
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (546)
++|+..|+++++. .|....+++++|.+|...|++++|+.+|++++..
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------- 48 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF------------------------- 48 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-------------------------
Confidence 3578888888887 6777889999999999999999999999999986
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 474 KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 474 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|....++..+|.+|...|++++|+.+|++++++.|..
T Consensus 49 ---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 49 ---------------------DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 34445677888888888888888888888888887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.2e-08 Score=78.96 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
.|+..|++++.. .|....+++++|.++...|++++|+.+|++++.+ +|....++.++|.+|...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 577888888876 3667889999999999999999999999999998 777888999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhc
Q psy597 433 GKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~ 452 (546)
|++++|+..|++++.+.+..
T Consensus 67 g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 99999999999999986643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.64 E-value=6.9e-08 Score=76.20 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+|....+++++|.++...|++++|+.+|++++++ +|....++.++|.+|...|++++|+..|++++.+.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3667889999999999999999999999999999 7888889999999999999999999999999998654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-07 Score=77.24 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=94.8
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.+++++|+.+|+++.+. .+.. +. +|.+|...+.+++|+.+|+++.+. ..+.++++||.
T Consensus 8 ~~d~~~A~~~~~~aa~~------g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL------NEMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHT------TCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC------CCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 46789999999999875 2222 22 999999999999999999999875 24678899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy597 386 LCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEILYKQVLTR 448 (546)
Q Consensus 386 ~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA~~~~~~al~~ 448 (546)
+|.. .+++++|+.+|+++.+. ..+.+.++||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9998 89999999999999875 235678999999999 99999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=74.41 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK-TKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~-~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+..|.++...|++++|+..|+++++. .|.... ++.++|.+|...|++++|+.+|++++...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56899999999999999999999998 777777 999999999999999999999999998743
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-07 Score=72.42 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
+|.++.+++.+|.+|...|+|++|+.+|+++++. .|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p 38 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------------------------------------------DP 38 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------ST
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------CC
Confidence 4777889999999999999999999999999985 34
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKT 326 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 326 (546)
....+++.+|.+|...|++++|+..|++++.+.+..
T Consensus 39 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 39 DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 556689999999999999999999999999997654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=74.22 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK-QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 339 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+..|.++...|++++|+..|+++++.. |.... ++.++|.++...|++++|+.+|++++.+ +|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 568899999999999999999999983 66777 9999999999999999999999999998 666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
...++.+ +.+.+++..|+++....+...
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 5555533 667888888888877766543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=73.23 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+|.+|...+.+++|+.+|+++.+. . .+.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~------g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---------- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL------N----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---------- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT------T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC------C----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----------
Confidence 899999989999999999999875 1 26789999999999 89999999999999875
Q ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy597 375 DVAKQLNNLALLCQN----QSKYEEVERYYQRALEI 406 (546)
Q Consensus 375 ~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~ 406 (546)
..+.++++||.+|.. .+++++|+.+|++|.+.
T Consensus 91 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 236678999999999 99999999999999886
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=91.88 Aligned_cols=194 Identities=11% Similarity=0.076 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE-PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 388 (546)
......|++++..+ |....+|...+..+...|+.++|. ..|.+|+..+ |.....+..++.+..
T Consensus 326 ~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 44567899998874 445788999999999999999997 9999999864 666778889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhc------CCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 389 NQSKYEEVERYYQRALEIYELKL------GPDD--------SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
..|+++.|...|++++....... .|.. .....+|...+.+..+.|..+.|..+|.+|++..+...
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~- 468 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT- 468 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-
Confidence 99999999999999998642110 0100 13456788888888899999999999999987622111
Q ss_pred CcccCCChhhHHHHhh-chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 455 GACDGDNKPIWQDRQK-NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.......+...... ++.+.|...|+.+++.+ |.....+...+......|+.+.|..+|++|+...+
T Consensus 469 --~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 469 --PDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp --THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred --hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 11111222223333 45889999999999873 33344566778888889999999999999998765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.6e-05 Score=75.57 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 218 LHNLVIQYASQGR---YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 218 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
++..|..+...+. +.+|+.+|++|+++ .|..+.
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------------------------------------------DP~~a~ 234 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------------------------------------------SPEFTY 234 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------------------------------------------CTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------------------------------CCCCHH
Confidence 4456666666554 47888889888884 566677
Q ss_pred HHHHHHHHHHHhhcH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 295 MLNILALVYRDQNKY----KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 295 ~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
++..++.+|.....+ ......+..++...... ...|..+.++..++..+...|++++|+..+++|+.+.
T Consensus 235 A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----- 307 (372)
T 3ly7_A 235 ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----- 307 (372)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----
Confidence 777777776533221 12223333344322211 2245557788889999999999999999999999993
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
|. ...+..+|.++...|++++|+..|.+|+.+
T Consensus 308 ---~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 308 ---MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 43 567789999999999999999999999999
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-05 Score=77.31 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHh---hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK----YKEAEPLCKRALEIRE 366 (546)
Q Consensus 294 ~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~ 366 (546)
.-++..|..+... ..+.+|+.+|++|+++ +|..+.++..++.+|..... ......-+..++....
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3355566666654 4568999999999998 56667777777777653211 1122233334443221
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
.. ...|..+.++..+|..+...|++++|+..+++|+.+ +|. ..++..+|.++...|++++|++.|.+|+
T Consensus 269 a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 269 TL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 223667788889999998899999999999999999 443 5678899999999999999999999999
Q ss_pred Hhhhh
Q psy597 447 TRAHE 451 (546)
Q Consensus 447 ~~~~~ 451 (546)
.+.|.
T Consensus 338 rL~P~ 342 (372)
T 3ly7_A 338 NLRPG 342 (372)
T ss_dssp HHSCS
T ss_pred hcCCC
Confidence 98654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=63.38 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+.-++.+|..++..|+|..|+.+|+.|+........ ..+....++..+|.++..+|+++.|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 455789999999999999999999999988643210 12456788999999999999999999999999998
Q ss_pred ChHHHHHHHHHH
Q psy597 415 DSNVAKTKNNLA 426 (546)
Q Consensus 415 ~~~~~~~~~~La 426 (546)
.|....+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 777777777776
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-05 Score=78.60 Aligned_cols=168 Identities=11% Similarity=0.031 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.+..+-..|.+.|++++|+.+|+++.+. + -.|+. .+|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----------------------------------------G-v~pd~-~ty 64 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----------------------------------------G-VQLSQ-YHY 64 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----------------------------------------T-CCCCH-HHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------------------------------------C-CCCCH-hHH
Confidence 3555667889999999999999998763 1 22332 234
Q ss_pred HHHHHHHHH---------hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 297 NILALVYRD---------QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 297 ~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+-.++.. .+..+.|..+|++.... +-.|. ..+|+.+...|.+.|++++|..+|++....
T Consensus 65 n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~------G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--- 134 (501)
T 4g26_A 65 NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD------KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF--- 134 (501)
T ss_dssp HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Confidence 444444433 34578888888887643 22232 557899999999999999999999998654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+-.| ...+|+.+-..|...|+.++|...|++..+. +-.| ...+|..|..+|.+.|+.++|..++++.-.
T Consensus 135 ---g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 135 ---GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES------EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp ---TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 2223 4667888999999999999999999998764 2233 345789999999999999999999998765
Q ss_pred h
Q psy597 448 R 448 (546)
Q Consensus 448 ~ 448 (546)
.
T Consensus 204 ~ 204 (501)
T 4g26_A 204 L 204 (501)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.2e-05 Score=61.13 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.-++.+|..++..|+|..|+..|+.|+....... ........++..+|.++...|+++.|+.++++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------- 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------- 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Confidence 34578999999999999999999999999875431 0124567889999999999999999999999999984
Q ss_pred ChHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLA 384 (546)
Q Consensus 373 ~~~~~~~~~~la 384 (546)
|....+..+++
T Consensus 77 -P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 -PEHQRANGNLK 87 (104)
T ss_dssp -TTCHHHHHHHH
T ss_pred -CCCHHHHhhHH
Confidence 66666677776
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=75.64 Aligned_cols=166 Identities=12% Similarity=0.003 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK---------YKEAEPLCKRALEIR 365 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 365 (546)
.+..+-..+.+.|++++|+.+|+++... +-.|. ..+|+.+-.++...+. .+.|..+|.+....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN------GVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3555567888999999999999998764 22232 3456666666655443 67888888887654
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+-.| ...+|+.+-..|...|++++|..+|++.... +-.| ...+|+.+-..|.+.|+.++|..+|++.
T Consensus 100 -----G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 2223 4567899999999999999999999988664 2233 4567889999999999999999999998
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRAL 484 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 484 (546)
...... .....++.+...+...|+.++|...+++..
T Consensus 167 ~~~G~~---Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 167 VESEVV---PEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCC---CCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 764111 011112223333445555555555554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00044 Score=64.22 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHc-----CC
Q psy597 331 HAAVAATLNNLAVLYGK-----RG------KYKEAEPLCKRALEIREKVLGKEHPD--VAKQLNNLALLCQNQ-----SK 392 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~ 392 (546)
.+..+..++..|.+... .| ....|...+++++++ +|. ...++..+|.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 34445566665555433 13 367888999999999 355 677999999999995 99
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNV-AKTKNNLASCYLK-QGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~-~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~~~ 451 (546)
.++|..+|++|+++ +|+. ..+++..|..+.. +|++++|..++++++...+.
T Consensus 220 ~ekA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 220 MEKAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999 7764 8889999999988 49999999999999997544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00015 Score=67.38 Aligned_cols=105 Identities=15% Similarity=0.059 Sum_probs=86.2
Q ss_pred CChhHHHHHHHHHHHHHH-----------hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----CCH
Q psy597 288 DHPDVATMLNILALVYRD-----------QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-----GKY 351 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-----g~~ 351 (546)
..+..+..+++.|.+... .+....|...+++++++ ...-....+|..+|.+|... |+.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ 220 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL------WPSYQEGAVWNVLTKFYAAAPESFGGGM 220 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH------CTTHHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHhCCCccCCCH
Confidence 457777778887776644 13467889999999998 22333577999999999995 999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q psy597 352 KEAEPLCKRALEIREKVLGKEHPDV-AKQLNNLALLCQN-QSKYEEVERYYQRALEI 406 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~eA~~~~~~al~~ 406 (546)
++|..+|++|+++. |.. ..+++.+|..+.. .|++++|..++++++..
T Consensus 221 ekA~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 221 EKAHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 99999999999994 754 8888999999988 59999999999999997
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0017 Score=63.88 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.-.+.+.+|..|...|++++-..++......+.... ....+
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------kak~~ 58 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSIS---------------------------------------KAKAA 58 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---------------------------------------hHHHH
Confidence 346889999999999999998888876654433222 11122
Q ss_pred HHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 294 TMLNILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAA--TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 294 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+...+-..+.. -+..+.-++.+.++++.+... ...... .-..+|.+|+..|+|.+|...+.+.+....+.
T Consensus 59 k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-- 132 (394)
T 3txn_A 59 KLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-- 132 (394)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--
Confidence 222222222221 133444566666666665542 222222 44589999999999999999999999888665
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL-KQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~-~~g~~~eA~~~~~~al~~~ 449 (546)
++......++..-..+|...+++.++..+|.+|........ +++...+.....-|.++. ..++|..|..+|-+++..+
T Consensus 133 dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 133 DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 44567788888999999999999999999999998876542 222345666777788888 8999999999999998654
Q ss_pred h
Q psy597 450 H 450 (546)
Q Consensus 450 ~ 450 (546)
.
T Consensus 212 ~ 212 (394)
T 3txn_A 212 D 212 (394)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.94 E-value=2e-05 Score=60.82 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSK---YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|..+..+..+|.+++..++ .++|...+++++.+ +|....++..+|..++..|+|++|+.++++++...+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5557788899999986666 79999999999999 999999999999999999999999999999998765
Q ss_pred h
Q psy597 451 E 451 (546)
Q Consensus 451 ~ 451 (546)
.
T Consensus 75 ~ 75 (93)
T 3bee_A 75 P 75 (93)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00015 Score=60.67 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHH
Q psy597 309 YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKEHP-DVAKQLNNLA 384 (546)
Q Consensus 309 ~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la 384 (546)
...+...|.+.+.. .+....+.+++|.++...+ ++++++.+++..++.. .| ....+++++|
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHH
Confidence 34455555555432 2234788999999999988 6779999999998862 25 6688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 421 (546)
..|++.|+|++|+.++++++++ .|.+..+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~i--------eP~n~QA 107 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQT--------EPQNNQA 107 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhc--------CCCCHHH
Confidence 9999999999999999999999 7755444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0039 Score=64.03 Aligned_cols=121 Identities=8% Similarity=-0.026 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------------------
Q psy597 352 KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL-------------------- 411 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~-------------------- 411 (546)
......|++++... |.....|...+..+...|+.+.|...|++|+.. ....
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHH
Confidence 34566777777764 566788999999999999999999999999875 1100
Q ss_pred -----CC-------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc-hhhHHHH
Q psy597 412 -----GP-------DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN-KAKNREK 478 (546)
Q Consensus 412 -----~~-------~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~ 478 (546)
.. ..+....+|...+....+.|..+.|...|+++ . .+. .........+......+ +.+.|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG---VGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CChHHHHHHHHHHHHHCCChHHHHH
Confidence 00 00112234555566666678899999999988 3 221 11111111122222233 5888888
Q ss_pred HHHHHHHH
Q psy597 479 YYQRALEI 486 (546)
Q Consensus 479 ~~~~Al~~ 486 (546)
.|+.++..
T Consensus 342 ife~al~~ 349 (493)
T 2uy1_A 342 IFSSGLLK 349 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888864
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=60.86 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCC-h-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 374 PDVAKQLNNLALLCQNQS---KYEEVERYYQRALEIYELKLGPDD-S-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~~~~~~~~~-~-~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+....+.+++|+++...+ +.++++..++..++. + | ...+++++||..|++.|+|++|..+++.++++
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456788999999999988 667999999999887 4 6 67899999999999999999999999999998
Q ss_pred hhhc
Q psy597 449 AHER 452 (546)
Q Consensus 449 ~~~~ 452 (546)
.|.+
T Consensus 101 eP~n 104 (152)
T 1pc2_A 101 EPQN 104 (152)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0054 Score=60.26 Aligned_cols=211 Identities=15% Similarity=0.117 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
-.+.+.+|.+|...|++++-.+++.......... .....+.....+-..+.. -+..+.-++.+..+++.+...
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--- 92 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--- 92 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence 4678899999999999999998888776655332 123344545555555444 356677788888888876532
Q ss_pred CChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 372 EHPDVAK--QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 372 ~~~~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
...... .-..+|.+|...|+|.+|...+.+.+.-+.+. .+......++..-..+|...|++.++...|.++....
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 122223 34589999999999999999999999987765 4467788899999999999999999999999998765
Q ss_pred hhcc---cCcccCCChhhHHHH-hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 450 HERE---FGACDGDNKPIWQDR-QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 450 ~~~~---~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
.... ..........|..+. ..+++..|..+|-++...|.. .+.|....+...++.+-...++.
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~---~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS---VDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHTTCG
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc---cccHHHHHHHHHHHHHHHHcCCH
Confidence 3210 011112223344466 678888888887777655432 23455566666667776666664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=56.64 Aligned_cols=68 Identities=24% Similarity=0.080 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNK---YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
|..+.++..+|.+++..++ .++|..++++++.+ +|....++..+|..++..|+|++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5556788999999987766 79999999999998 56668899999999999999999999999998763
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00042 Score=58.35 Aligned_cols=130 Identities=13% Similarity=-0.011 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE-NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...++++.-...++..|.|+.|+-....++.+....... .......++..+|.+++..|+|..|...|++|+...+.+.
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 344556666778888999999999999999887554111 1334577899999999999999999999999999876431
Q ss_pred CC-----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 370 GK-----------------EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 370 ~~-----------------~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.. +.+....+.+.++.||...|++++|+..++.. |.....+.+...||.+|
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 11 11223468889999999999999999987643 22333455566677665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0017 Score=54.64 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
..++..-...+...|.|+.|+.....++......... .......++..+|.+++..|+|..|..+|++|+...+.....
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666777889999999999999998886443111 122456789999999999999999999999999987743211
Q ss_pred -----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 414 -----------------DDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 414 -----------------~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+.+....+.+.++.||.++|++++|+..++.+
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11223478899999999999999999887654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0041 Score=63.92 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~ 413 (546)
..+|...+......+..+.|...|.+| .. + +.....+...|.+....+ +++.|...|+.+++.+ +
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~ 351 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN------E--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-----P 351 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------S--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------C--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----C
Confidence 456667777777777888888888887 21 1 112334555565555545 5888888888888762 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+.| ..+...+......|+.+.|..+|+++
T Consensus 352 ~~~---~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 352 DST---LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TCH---HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233 33444566677788888888777775
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.088 Score=53.01 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=129.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh-hHHHHHhhhhhhH--HHHHHHHHHHHhc
Q psy597 207 AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET-LEDCALRSRKESY--DIVKQAKVAQILG 283 (546)
Q Consensus 207 ~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~-~~~~~l~~~~~~~--~~~~~~~~~~~l~ 283 (546)
.+.+.+...+++..+...++..|+|+....++. .+.+..+....+.. ............. +..........+.
T Consensus 48 ~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~----~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~ 123 (445)
T 4b4t_P 48 QASDLASSKEVLAKIVDLLASRNKWDDLNEQLT----LLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIR 123 (445)
T ss_dssp SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHH----HHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCS
T ss_pred hccchhhHHHHHHHHHHHHHHhccHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 456667778889999999999999988766553 22233333333332 2222222222111 1111222222222
Q ss_pred cCCCC----ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 284 SGGHD----HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 284 ~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
..... ....+.+...|+.+|...|++.+|...+.....-.... .+.......+.....+|...+++.+|...+.
T Consensus 124 ~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ 201 (445)
T 4b4t_P 124 VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--MEMSEKIQFILEQMELSILKGDYSQATVLSR 201 (445)
T ss_dssp SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 21111 12367788899999999999999999999876432221 3445667888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 360 RALEIREKVLGKEHP-DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 360 ~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++....... ..+| .....+...|.++...++|.+|-.+|..+...+...
T Consensus 202 ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 202 KILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 986544333 2233 346677888999999999999999999998875543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0028 Score=52.19 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKY------KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
.+.|..........|+. ++-++.|++|+..............+..|...|.. ...++.++|...|+.++.+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-- 89 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-- 89 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--
Confidence 55677777777777988 88888999988765222122334567788888866 5669999999999999997
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+...+.++...|..-.++|+...|...+.+++.+.+.
T Consensus 90 ------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 ------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3334889999999999999999999999999997654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0054 Score=50.49 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccC
Q psy597 212 PARLRTLHNLVIQYASQGRY------EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 285 (546)
|.+++.|..........|+. +.-+..|++|+...+...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k------------------------------------ 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK------------------------------------ 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc------------------------------------
Confidence 55566777777777777998 777788888887654432
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.......+..|...|.. ...++.++|...|+.++.+ +...+.+|...|..-.++|+...|...+.+|+...
T Consensus 54 ~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 54 YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22455667777777755 5669999999999999987 22238899999999999999999999999999974
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.075 Score=53.53 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=90.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 364 (546)
..+.+....++..+..++...|+++...+++.-... ..|. .+...........-|. .....+. ......++.
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~ 121 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIET 121 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHH
Confidence 335666677788888899999999887666543221 1111 1222222222222222 1222111 111222222
Q ss_pred HHHhcCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 365 REKVLGKE---HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 365 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
......+. ....+.....|+.+|...|++.+|...+.....-... ..+.......+.....+|...+++..|...
T Consensus 122 l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~~~~kve~~l~q~rl~l~~~d~~~a~~~ 199 (445)
T 4b4t_P 122 IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SMEMSEKIQFILEQMELSILKGDYSQATVL 199 (445)
T ss_dssp CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111111 1235667788999999999999999999887643211 123445677888899999999999999999
Q ss_pred HHHHHHh
Q psy597 442 YKQVLTR 448 (546)
Q Consensus 442 ~~~al~~ 448 (546)
+.++...
T Consensus 200 ~~ki~~~ 206 (445)
T 4b4t_P 200 SRKILKK 206 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0086 Score=48.12 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhhcccCcccCCChhhHHHHhh
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE---AEILYKQVLTRAHEREFGACDGDNKPIWQDRQK 470 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 470 (546)
..+...|.+.+.. .+....+.+++|+++.+..+... ++.+++..+.
T Consensus 18 ~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~----------------------- 66 (126)
T 1nzn_A 18 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----------------------- 66 (126)
T ss_dssp HHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----------------------
Confidence 3444555555443 33456778888888888776655 5555555443
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 471 NKAKNREKYYQRALEIYELKLGPDDS-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 471 ~~~~~A~~~~~~Al~~~~~~~~~~~~-~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+.| ....+++.||..+++.|+|++|+.+++..+++-|++
T Consensus 67 ----------------------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 67 ----------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp ----------------------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----------------------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 2234 567889999999999999999999999999988765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.023 Score=45.57 Aligned_cols=84 Identities=13% Similarity=0.066 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhcCCCCh-HHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKE---AEPLCKRALEIREKVLGKEHP-DVAKQLNNL 383 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l 383 (546)
....+...|.+.+.. .+....+.+++|+++....+... ++.+++..+. .+.| ..-.+++.|
T Consensus 16 ~l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHH
Confidence 344455555555442 12336788999999999887766 6666655443 3335 678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q psy597 384 ALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~ 406 (546)
|..+++.|+|++|..+++..+++
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.91 Score=43.12 Aligned_cols=218 Identities=13% Similarity=0.048 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY-KEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~ 366 (546)
.......+++.=+..+...|++..|.++..-.++.+.+..-+-+ ......+..++.....- ..=..+..+++....
T Consensus 50 ~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~ 126 (336)
T 3lpz_A 50 NWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSK 126 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 34445555555566666666666666666666666555411111 12344444444444321 122456777777766
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHHHHhcCCCChHHHHHHHHHH-HHHHHcCCHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ--------RALEIYELKLGPDDSNVAKTKNNLA-SCYLKQGKYKE 437 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~--------~al~~~~~~~~~~~~~~~~~~~~La-~~y~~~g~~~e 437 (546)
+. |......+..+..+|..|+..+++.+|..+|- ...++.-.....+.+.....+...| ..|+..++...
T Consensus 127 ~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~ 205 (336)
T 3lpz_A 127 KF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRA 205 (336)
T ss_dssp HH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred hc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHH
Confidence 53 33334556788899999999999999988872 1112222221122344444444444 44788999999
Q ss_pred HHHHHHHHHHhhhhcccC----------------cccCCChhhHH---HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHH
Q psy597 438 AEILYKQVLTRAHEREFG----------------ACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 498 (546)
|...+....+........ ...+..+..+. ....+. ...|....+.|...+..+.+..
T Consensus 206 A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~ 281 (336)
T 3lpz_A 206 ANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIW 281 (336)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHH
Confidence 999887766654221110 00111112222 122222 3456666666665555443366
Q ss_pred HHHHHHHHHHHHHcC
Q psy597 499 AKTKNNLASCYLKQG 513 (546)
Q Consensus 499 ~~~~~~La~~y~~~g 513 (546)
...+..+|.+|+...
T Consensus 282 ~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 282 DTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 778889999998664
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.03 Score=56.25 Aligned_cols=108 Identities=19% Similarity=0.094 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
...++..+|..|...|+++.|.+.|.++.... .........+..+..++...+++..+..++.++..+.... +
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-----~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~ 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-----ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--G 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-----TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--C
Confidence 45678899999999999999999999988765 2235567888888999999999999999999998775443 3
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+...........|.++...++|.+|..+|-.++..
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 44445566667788888999999999999888764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=95.81 E-value=1.3 Score=41.78 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=97.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~ 366 (546)
........++.-+..+...|++..|.++..-.++.+.+. +..+ .......+..++.....-+ .=..+..+++....
T Consensus 48 ~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~--~~~~-~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~ 124 (312)
T 2wpv_A 48 SYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA--EVKV-DDISVARLVRLIAELDPSEPNLKDVITGMNNWSI 124 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCC-SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHh
Confidence 344555666666677777777777777776666666664 2111 1233444555544433211 22567777777766
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHHHHHhcCCCChHHHHHHHHHHH-HHHHcC
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA------------LEIYELKLGPDDSNVAKTKNNLAS-CYLKQG 433 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~La~-~y~~~g 433 (546)
+..+ .....+..+..+|..|+..|++.+|..+|-.+ .+.+.. .+.+.|.....+...+. .|+..|
T Consensus 125 ~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~-~~~~~~~e~dlf~~RaVL~yL~l~ 202 (312)
T 2wpv_A 125 KFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ-VDDIEDSTVAEFFSRLVFNYLFIS 202 (312)
T ss_dssp HTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHHHHHhc
Confidence 6522 23445678899999999999999999987421 111111 11135666666655554 477899
Q ss_pred CHHHHHHHHHHHHHhh
Q psy597 434 KYKEAEILYKQVLTRA 449 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~ 449 (546)
+...|...+....+..
T Consensus 203 n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 203 NISFAHESKDIFLERF 218 (312)
T ss_dssp BHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.04 Score=55.29 Aligned_cols=110 Identities=13% Similarity=0.055 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....++..+|..|...|+++.|.+.|.++...+ .........+..+..++...+++..+..++.++.......
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-----~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~- 201 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-----ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG- 201 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-----TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-
Confidence 3345678889999999999999999999988765 2234557889999999999999999999999997775432
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
++...........|.++...++|..|-.+|-.++..
T Consensus 202 -~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 -GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 344444566667788888999999999999887665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.28 Score=52.33 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=83.9
Q ss_pred hhc-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhcCC---C------
Q psy597 306 QNK-YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGK---E------ 372 (546)
Q Consensus 306 ~g~-~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~---~------ 372 (546)
.++ ++.|+.++++.... .|... ++...+.+.. ...+--+|+....++++........ .
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 57899999887654 23222 2222222221 2234456777777777532211100 0
Q ss_pred -ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 373 -HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 373 -~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.+.....+..-+..+...|+|+-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1233445666788888999999999999999999 8999999999999999999999999777655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.21 Score=54.52 Aligned_cols=106 Identities=12% Similarity=-0.039 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
.....+|+.+-..|.+.|+.++|..+|.+..+...+-. .....+|+.|-..|++.|++++|...|++..+.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~----~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK----LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA----- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 34456789999999999999999999988765432211 224678999999999999999999999998764
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKY-KEAEILYKQVLTR 448 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~-~eA~~~~~~al~~ 448 (546)
+-.| ...+|+.+-.++.+.|+. ++|..+|++....
T Consensus 195 -G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 -GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp -TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 3344 456788888899999985 7888999887764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.25 Score=39.78 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 376 VAKQLNNLALLCQNQSKY---EEVERYYQRALEIYELKLGPDDS-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~---~eA~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+.+++|+++....+. ..++..++..+.. +| ..-.+++.||..+.+.|+|.+|..+.+.++.+.|.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 457788999999887765 3577777766654 44 57889999999999999999999999999998655
Q ss_pred c
Q psy597 452 R 452 (546)
Q Consensus 452 ~ 452 (546)
+
T Consensus 111 N 111 (134)
T 3o48_A 111 N 111 (134)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.43 Score=50.88 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=66.8
Q ss_pred hcHHHHHHHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 307 NKYKEAANLLNDALTIREKTL---GEN-------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~---g~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
.+--+|+..+.++++...... ... .+.....+..-+..+...|+|+-|+.+.++|+... |..
T Consensus 299 ~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------Pse 370 (754)
T 4gns_B 299 TKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDS 370 (754)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSC
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chh
Confidence 345667777777775322110 011 12234456666888889999999999999999995 999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~a 403 (546)
..+|..|+.+|..+|+|+.|+-.+.-+
T Consensus 371 F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 371 FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999999999999887655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.54 Score=51.44 Aligned_cols=108 Identities=13% Similarity=0.031 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
........++.+-..|...|+.++|..+|.+......+-. .|. ..+|+.|-..|.+.|++++|..+|.+..+.
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--- 194 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA--- 194 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 4556677899999999999999999999988765432221 122 568999999999999999999999998765
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKY-EEVERYYQRALEI 406 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~ 406 (546)
+-.| ...+|+.+-.++.+.|+. ++|..+|++..+.
T Consensus 195 ---G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 ---GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp ---TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ---CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2234 466778888888898985 7889999988775
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.97 Score=37.87 Aligned_cols=99 Identities=20% Similarity=0.141 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI---------- 364 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 364 (546)
.-..++.+++..|+|..|+-++... ..+.+.+.-+.||....+|..|+..++..++-
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~l-------------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHKL-------------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTC-------------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred HHhhhhhhhhhcchHhHHHHHHHhc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 3456788888999998887665431 12445667788999999999999999998832
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.-+.+--+..+.-..+..+|.++...|+.++|+.+|.....+
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111111223445567888999999999999999999999887
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.45 Score=38.30 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKY---KEAEPLCKRALEIREKVLGKEHP-DVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+.+++|+++.+..+. .+++.+++..+.. +| ..-.+++.||..+++.|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 57888999999888765 4577777776654 24 57889999999999999999999999999998
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.25 E-value=3.7 Score=38.65 Aligned_cols=194 Identities=12% Similarity=-0.031 Sum_probs=121.8
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
...|+|-+|-..++.....+.+. .......+.++.-+..+.+.|++..|.++..-.++..++..- +........+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~rl 98 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVARL 98 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 34577777777777766665554 445556667777778888889999988888888877766522 2223345566
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCCh
Q psy597 384 ALLCQNQSKY-EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462 (546)
Q Consensus 384 a~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 462 (546)
..++.....- ..=..+.++++....+..+ .....+..+..+|..|++.|++.+|..+|--.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---------------- 161 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT---------------- 161 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----------------
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----------------
Confidence 6666553322 2336778888888766532 234456788999999999999999998874211
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhh
Q psy597 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLAS-CYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 463 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~-~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.+.+..+..-..+.+ .....+.|.....+...+. .|...|+...|...+....+...
T Consensus 162 ----------~~s~~~~a~~l~~w~-~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~ 219 (312)
T 2wpv_A 162 ----------HDSMIKYVDLLWDWL-CQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFI 219 (312)
T ss_dssp ----------HHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred ----------CccHHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 111111122222222 2221124555555544443 56789999999999998877653
|
| >1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.31 Score=30.81 Aligned_cols=47 Identities=34% Similarity=0.410 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy597 100 KQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLE 146 (546)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~ 146 (546)
..+|-.||.-|..||..||.||.+....+.+.|.......+-.++++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 35678899999999999999999999999988888777777766653
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.2 Score=50.82 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
..++..||.+......+..|..+|.+|..+. |..+..++.||.+....|+.-+|+-+|-+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------- 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------- 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--------
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc--------
Confidence 3477889999999999999999999999994 999999999999999999999999999998864
Q ss_pred ChHHHHHHHHHHHHHH
Q psy597 415 DSNVAKTKNNLASCYL 430 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~ 430 (546)
......+..||..++.
T Consensus 216 ~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 216 KFPFPAASTNLQKALS 231 (497)
T ss_dssp SBCCHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHH
Confidence 2223444555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=1.2 Score=43.83 Aligned_cols=128 Identities=14% Similarity=0.035 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHH--HhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAA--ETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
....+...|......|+.+.|...+.+|+.++.... +... ..+...... . -...
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~--L~~~~~~~w~~~~r~----------~------------l~~~ 169 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV--LDDLRDFQFVEPFAT----------A------------LVED 169 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSST--TGGGTTSTTHHHHHH----------H------------HHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC--CCCCCchhHHHHHHH----------H------------HHHH
Confidence 444555556666678999999999999998763221 0000 000000000 0 0123
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+...++..+...|++.+++..+..++.. +|..-.++..+-.++...|+..+|+..|++........+|-
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455677788899999999999999999877 56556788899999999999999999999999887766665
Q ss_pred CC
Q psy597 372 EH 373 (546)
Q Consensus 372 ~~ 373 (546)
++
T Consensus 242 ~P 243 (388)
T 2ff4_A 242 DP 243 (388)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.49 Score=38.61 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYE---EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~---eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.....+.+++|+++....+.. +++..++..+.. +....-.+++.||..++++|+|.+|..+.+.++++.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 345677889999999877655 566666666553 1225778899999999999999999999999999865
Q ss_pred hc
Q psy597 451 ER 452 (546)
Q Consensus 451 ~~ 452 (546)
.+
T Consensus 109 ~n 110 (144)
T 1y8m_A 109 NN 110 (144)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.80 E-value=1 Score=36.75 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 334 VAATLNNLAVLYGKRGKYK---EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+.+++|+++....+.. +++.+++..+... +...-.+++.||..+++.|+|++|..+.+..+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-------CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4678899999999887654 5777777766531 2257788999999999999999999999999998
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=1.5 Score=43.03 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=80.5
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCC---CCH-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 302 VYRDQNKYKEAANLLNDALTIREKTLGE---NHA-----------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 302 ~~~~~g~~~~A~~~~~~al~~~~~~~g~---~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.....|+...|...+.+|+.+++-.+-. +.+ ....+...++..+...|++.+|+..+..++..
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--- 200 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--- 200 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 3344578888999999998876322111 111 12345566788889999999999999999887
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+|..-.++..+-.++...|+..+|+..|+++...+..-+|-+
T Consensus 201 -----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 201 -----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp -----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 577778899999999999999999999999999877766644
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.74 E-value=1.1 Score=48.52 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~a 403 (546)
..|..+|..+...|+++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45566666666666666666666654
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.72 Score=46.52 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=65.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHH--HHHHHhc-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHH-h
Q psy597 300 ALVYRDQNKYKEAANLLNDAL--TIREKTL-GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-------IREK-V 368 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al--~~~~~~~-g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~~~-~ 368 (546)
-..+...+++++|..+-...+ ....... ..-+...+.+|+..+.++...|+............. ..+. .
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 344556788998888877655 2211110 011445677888888888888887664332222222 1111 1
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
...|....+..++.+-..|...+.|+.|..+..++.-. .. ...+...+..++.+|.++..+++|.+|..++..|+..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22345567888889999999999999999999987411 00 0113345777889999999999999999999999987
Q ss_pred hhhc
Q psy597 449 AHER 452 (546)
Q Consensus 449 ~~~~ 452 (546)
+|..
T Consensus 300 ap~~ 303 (523)
T 4b4t_S 300 APHN 303 (523)
T ss_dssp CSCS
T ss_pred CCcc
Confidence 6653
|
| >2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A | Back alignment and structure |
|---|
Probab=91.92 E-value=0.71 Score=33.74 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy597 83 AQVMTALAGHLQNVEAEKQKLRTQVRRLVQENA 115 (546)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (546)
.+++..|.+.+..++.|++.||++|..+..+..
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 478888999999999999999999998877763
|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
Probab=91.69 E-value=1.6 Score=35.47 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=55.1
Q ss_pred HHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 82 EAQVMTAL--AGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
-.-||++| +.-+-.+..+...|+.++..+..+..-|.++|..++-++..+.+.+..+.+++..+
T Consensus 57 r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 57 LRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577765 77788888999999999999999999999999999999999999988888877654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.69 E-value=5.3 Score=33.50 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-------
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE--I------- 406 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~------- 406 (546)
..-..++.+++..|.|..|+-++.. -..+.+.+.-+.||....+|..|+..++..+. +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 3445678888999999988766532 33466667788899999999999999999883 1
Q ss_pred -HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc------CcccCCChhhHHHHhhchhhHHHHH
Q psy597 407 -YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF------GACDGDNKPIWQDRQKNKAKNREKY 479 (546)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~ 479 (546)
--+.+--+..+....+..+|.++...|+.++|+.+|.......+-.+. ....+....-.--+..|+-.--..+
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y 180 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEY 180 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhh
Confidence 011111122344566788999999999999999999998875431100 0000000000000111111111222
Q ss_pred HHHHHHHHHH-------HcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 480 YQRALEIYEL-------KLGPDDSNVAK-TKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 480 ~~~Al~~~~~-------~~~~~~~~~~~-~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+.......+. .....-|.... ...+.+..|+..|-.++...+|....+..|
T Consensus 181 ~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 181 VSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 3333322221 01111344333 234567889999999999999998777544
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.35 Score=48.76 Aligned_cols=148 Identities=12% Similarity=0.038 Sum_probs=65.0
Q ss_pred HHHHcCCHHHHHHHHHHHHH--HHHHh-cCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHhc-C
Q psy597 344 LYGKRGKYKEAEPLCKRALE--IREKV-LGKEHPDVAKQLNNLALLCQNQSKYEEVERY-------YQRALEIYELKL-G 412 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~--~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~-------~~~al~~~~~~~-~ 412 (546)
.+...+++++|..+....+. ..... --.-++-.+.+|+.++.++...|+....... -...+..++... .
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 45567889999888876652 21110 0011344567788888888888876653221 112233333332 2
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 413 ~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.|....+..++.+-+.|...+.|+.|..+..++. .|...
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~--------------------------------------- 263 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD--------------------------------------- 263 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT---------------------------------------
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc---------------------------------------
Confidence 4455677888889999999999999999888763 22110
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..+......++.+|.++.-+++|.+|..++..|+..+|..
T Consensus 264 ~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 264 VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 0124456778899999999999999999999999876543
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.78 Score=46.52 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
..++..||.+......+..|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 346788999999999999999999999999 8999999999999999999999999999988753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=91.10 E-value=4.3 Score=43.80 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDA 319 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~a 319 (546)
..|..+|..+...|+++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45667777777777777777777665
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=91.04 E-value=8.2 Score=34.47 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. .|+.++|..+.++++..+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A 203 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888889999888888888888776 799999999999888754
|
| >3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.68 E-value=9.4 Score=34.53 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. .++.++|..+.++++..+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888889999888888888888776 799999999998888753
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=90.65 E-value=8.4 Score=34.42 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~~ 530 (546)
.+.|...|+.|..+....+++.+|.......+.+..|+. .|++++|....++|+.-.-
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai 204 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356788899999999888899999888888888888776 7999999999888887553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.59 E-value=2.9 Score=35.64 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=66.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
+....|+++.|.+..+.. +....|..||......|+++-|+.+|.++-+. .
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~ 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------D 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------H
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------H
Confidence 345789999998886543 12457899999999999999999999987443 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRA 483 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 483 (546)
.+..+|...|+.+.-...-+.+... ...+.....+...|+++++.+.|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~~---------g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQTR---------EDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHC---------ccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3445566667765544444443321 11222333466777777777766554
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=9.8 Score=34.53 Aligned_cols=57 Identities=23% Similarity=0.185 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. +++.++|..+.++++.-+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 357889999999999888889999888888888888776 799999999998888653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.44 E-value=5.1 Score=34.09 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 303 YRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382 (546)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 382 (546)
....|+++.|.+..+.. + . ...|..+|......|+++-|+.+|.++-... .
T Consensus 15 AL~lg~l~~A~e~a~~l---------~-~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~----------------~ 65 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---------N-D---SITWERLIQEALAQGNASLAEMIYQTQHSFD----------------K 65 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---------C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH----------------H
T ss_pred HHhcCCHHHHHHHHHHh---------C-C---HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH----------------H
Confidence 34678999888876543 1 1 4579999999999999999999999875442 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+..+|...|+.+.-....+.+... ++ ++....+++.+|++++++++|.+.
T Consensus 66 L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 66 LSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 444566667765544333333221 12 122335567888888888887654
|
| >3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=9.9 Score=34.18 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. +++.++|..+.++++..+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367899999999999888889999888888888888776 799999999999888754
|
| >2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=89.38 E-value=12 Score=33.88 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++. ..++|.+|.......|.+..|+. +|+.++|..+.++++..+
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999 77888899888888888888776 799999999999988754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.26 E-value=6 Score=36.07 Aligned_cols=118 Identities=8% Similarity=0.028 Sum_probs=85.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhH
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 465 (546)
-....|++++|+......++. .|..+.....|..+++-.|+++.|..-++.+.++.++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~----------- 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----------- 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-----------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-----------
Confidence 355789999999999999887 8999999999999999999999999999999887654311
Q ss_pred HHHhhchhhHHHHHHHHHHH---HHHHHcC-------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 466 QDRQKNKAKNREKYYQRALE---IYELKLG-------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 466 ~~~~~~~~~~A~~~~~~Al~---~~~~~~~-------~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
....|..++. .-.+.+. ...|........-+......|+.++|..+-.+|++..|..
T Consensus 67 ----------~a~~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 67 ----------GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1112333321 1112221 1133345555556667777899999999999999987654
|
| >3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ... | Back alignment and structure |
|---|
Probab=88.23 E-value=14 Score=33.01 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTR 448 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~ 448 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. .++.++|..+.++++.-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999888889999888888888888774 69999999998888764
|
| >2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 | Back alignment and structure |
|---|
Probab=88.21 E-value=13 Score=32.81 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=50.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q psy597 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL-KQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~-~~g~~~eA~~~~~~al~~~ 449 (546)
..|+.+.|...|+.|.++..+.++|.+|.......|.+..|+ -+++.++|..+.++++...
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 356789999999999999988777778876667777776665 5789999999999998753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.47 E-value=20 Score=33.97 Aligned_cols=190 Identities=14% Similarity=0.076 Sum_probs=113.7
Q ss_pred HHhhcH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 304 RDQNKY---KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL 380 (546)
Q Consensus 304 ~~~g~~---~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 380 (546)
...|+| -+|-..++.....+-+. .......+.++.=+..+.+.|++..|.++..-.++.+.+..-+ ++ ....
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~--~~-~~~~ 97 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR--VD-GASR 97 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC--CC-HHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC--CC-HHHH
Confidence 345666 66666666655554443 4455556666666777778888888888887777777665221 21 2445
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccC
Q psy597 381 NNLALLCQNQSKY-EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG 459 (546)
Q Consensus 381 ~~la~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 459 (546)
..+..++.....- ..=..+.++++....+. +......+..+..+|..|++.+++.+|..+|- +.
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg------------ 162 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG------------ 162 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS------------
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc------------
Confidence 5566666554432 23356778888877663 33334456778889999999999999998873 11
Q ss_pred CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 460 DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN-LASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 460 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~-La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.-+.+ ..|-..+--|.... .+.....+.. ....|...++...|...+....+..
T Consensus 163 ------------~~~s~-~~~a~mL~ew~~~~---~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 163 ------------TKESP-EVLARMEYEWYKQD---ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHTS---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------CCchH-HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00111 11112221222221 2333333333 3445778999999999888877655
|
| >1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 | Back alignment and structure |
|---|
Probab=86.66 E-value=1.5 Score=30.24 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=29.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHH
Q psy597 87 TALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELA 122 (546)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la 122 (546)
..|-..+..++.+...|+.+|..|..|+.||++.|.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677788888999999999999999999887764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.68 E-value=20 Score=40.57 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---------------cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKT---------------LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
..+.+|.++...|++++|..+|.++-.-.... ...........|..+..++...|.++.++.+..
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45889999999999999999998873211000 000111123567788889999999999999999
Q ss_pred HHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 360 RALEIREKVLGKEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
.|++.. +.+++. ....|.++-..+...|+|++|...+...-. ....-.++..|....+..|..+.
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhh
Confidence 999763 223333 334678888889999999999877743321 12223444555555555555443
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.28 E-value=26 Score=34.11 Aligned_cols=130 Identities=7% Similarity=-0.047 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------CChHHHHHHHHH
Q psy597 313 ANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK---------EHPDVAKQLNNL 383 (546)
Q Consensus 313 ~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~l 383 (546)
+..|+..+.-+... -+.-..+. .+..+.....+.++|.+++.+......+..+. .......+...+
T Consensus 59 ~~ly~~fi~~f~~k--in~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDK--INQLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHH--SCSHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45556655555433 11222221 23445567789999999998775544332211 112345677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+....-..+.
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999999998887765555556777777788888889998887766555554
|
| >2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 | Back alignment and structure |
|---|
Probab=84.36 E-value=12 Score=33.06 Aligned_cols=180 Identities=11% Similarity=0.038 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CchhHHHhhHHHHHhhhhhhH-HHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTS-GKYEAAETLEDCALRSRKESY-DIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
.++....+.++|++...+.+++.+.+...+ .-..+-+.++..+....-... ..+........- ...... ..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqk---ek~~~~----~~ 83 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTK---QLNNDE----LV 83 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSCHH----HH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH---HcCCHH----HH
Confidence 678888899999999999999887321111 112222333333332111111 111111111100 111111 11
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-----KRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
.+..-|... =-.+=...+...+.+..+.+-+........+-..|..|. ..|+.+.|...|+.|.++..+..++.
T Consensus 84 ~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pt 162 (227)
T 2o8p_A 84 KICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKI 162 (227)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCC
Confidence 122222211 123334566777777766554443222333334454443 35778999999999999998877777
Q ss_pred ChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQ-NQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~ 407 (546)
||-......|.+..|+ -.+++++|....++|+++.
T Consensus 163 hPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 163 EQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 8877777777777666 4899999999999998864
|
| >3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic} | Back alignment and structure |
|---|
Probab=83.50 E-value=0.79 Score=24.08 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=17.1
Q ss_pred HHHHHHhhhhcHHHHHHHHHHHHH
Q psy597 107 VRRLVQENAWLRDELANTQQKLQS 130 (546)
Q Consensus 107 ~~~~~~~~~~l~~~la~~~~~l~~ 130 (546)
+|||.|.|..|.+|++.+.-.+..
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 678888888888888776655543
|
| >2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=82.68 E-value=24 Score=31.95 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 365 (546)
+.|...|++|.+++ ..+.+.+|.......+.+..|+. +++.++|..+.++|+.-.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57889999999999 77889999888888888887776 799999999999988765
|
| >3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.87 E-value=10 Score=30.83 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 83 AQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
.+.+..|-..+..++.....|...++.-...++-++||+..++-.+...+..+..++++.+.|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777778899999999999999999999999999987653
|
| >2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=81.69 E-value=4.2 Score=26.37 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHh
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQAN 135 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~ 135 (546)
=+|++||..|++||.|+..-|..-|..-...|.-+
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999888777665555444444433
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=81.67 E-value=30 Score=31.31 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+.+...|+.|..+....+++.+|.......+.+..|+. .+++++|..+.++|+.-.
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 346788899999999888899999988888888888776 699999999888887654
|
| >2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A | Back alignment and structure |
|---|
Probab=81.58 E-value=8.4 Score=28.04 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
.+.+...-+..+..+.+.|+.+|++|...++-+..++..++++....|..+.
T Consensus 14 ~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 14 ISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677788888999999999999999999999999888888887765
|
| >2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.35 E-value=4.8 Score=28.30 Aligned_cols=51 Identities=29% Similarity=0.343 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKH 144 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~ 144 (546)
+++..-|..|=+.|..|.-++.-|+.|+...++...+.+..+..++++.+.
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666778888999999999999999999999999999999999988653
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.19 E-value=27 Score=33.99 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=76.9
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGE---------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.....+..+|.+++.+.........+. .......+...++..|...|+.++|..+++++-.......+.
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 44556678899999988775443322111 112345667788999999999999999999998887776555
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
+....+..+...+..|...+++..+...+-..+..+
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 545667777778888889999988777766666543
|
| >1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B | Back alignment and structure |
|---|
Probab=80.31 E-value=4.3 Score=29.68 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=36.5
Q ss_pred cCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHH
Q psy597 80 LNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELAN 123 (546)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 123 (546)
++-+.++..-..|+..++.+.+.|+.++..|.++|..|+..|..
T Consensus 36 ~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777778888999999999999999999999888777754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 546 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-15 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-08 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-13 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-09 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-09 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-08 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 6e-12 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-09 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 9e-07 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 1e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-10 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-10 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.001 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 5e-07 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-05 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 5e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 5e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.3 bits (225), Expect = 2e-20
Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 36/240 (15%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
P+ A + L V+ Q + A + A+T+ NL +
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLK 214
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+ + A RAL + P+ A NLA + Q + Y+RA+E+
Sbjct: 215 EARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
+ NLA+ ++G EAE Y L D N
Sbjct: 267 --------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANI 314
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
R++ + + Y++ALE+ A +NLAS +QGK +EA + YK+ +
Sbjct: 315 KREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (182), Expect = 5e-15
Identities = 54/236 (22%), Positives = 84/236 (35%), Gaps = 36/236 (15%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
P NL + +QG +A+ ++A+ A +
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD-----------AYINLGNVLK 214
Query: 272 IVKQAKVA-QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN 330
+ A P+ A + LA VY +Q A + A+ ++
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH----- 269
Query: 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
NLA ++G EAE AL + P A LNNLA + + Q
Sbjct: 270 ---FPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQ 318
Query: 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
EE R Y++ALE+ A +NLAS +QGK +EA + YK+ +
Sbjct: 319 GNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (160), Expect = 2e-12
Identities = 41/222 (18%), Positives = 72/222 (32%), Gaps = 34/222 (15%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
P L NL ++ AV + L + L
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLR---ALSLSPNHAVVHGNLACVYYEQGLIDLA 256
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
I + ++ P LA +++ EA + N AL + +
Sbjct: 257 IDTYRRAIEL-------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
NLA + ++G +EA L ++ALE+ P+ A +NLA + Q Q
Sbjct: 310 --------NLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQG 353
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
K +E +Y+ A+ I A +N+ + +
Sbjct: 354 KLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 1e-08
Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 38/210 (18%)
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERY 399
LA + G ++ AE C + PD L L+ + + + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG 459
A++ + +A+ +NL + Y ++G+ +EA Y+ L + G +
Sbjct: 56 STLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 460 DNKPIWQDRQKNKAKNREKYYQRALEIYE----------------------LKLGPDDSN 497
+ + + Q ++Y LK N
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 498 VAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
A +NL + QG+ A +++ +T
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 4e-08
Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 38/256 (14%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
PD +L +L+ ++ + +A+ A+ +A +NL +Y +R
Sbjct: 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--------LAEAYSNLGNVYKER 80
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL---- 404
G+ +EA + AL ++ + A + + Q+ ++
Sbjct: 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140
Query: 405 --------------EIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450
+ LK N A +NL + QG+ A +++ +T
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-- 198
Query: 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510
D + + + + RA+ Y + N A NLA Y
Sbjct: 199 -------DPNFLDAY--INLGNVLKEARIFDRAVAAYL-RALSLSPNHAVVHGNLACVYY 248
Query: 511 KQGKYKEAEILYKQVL 526
+QG A Y++ +
Sbjct: 249 EQGLIDLAIDTYRRAI 264
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 70.3 bits (170), Expect = 1e-13
Identities = 37/311 (11%), Positives = 79/311 (25%), Gaps = 7/311 (2%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEA-AETLEDCALRSRKESYDIVKQAKVAQILG 283
+ G + A L K ALE+L A ++ L + E + + + +
Sbjct: 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81
Query: 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAV 343
L + + Q + A A + + E + A
Sbjct: 82 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 141
Query: 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
L + EAE + +E+ + + L L + + R
Sbjct: 142 LLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 198
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463
+ ++ + G A +
Sbjct: 199 ENLLG-NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523
+ + E + E + S++ + L Y + G+ +A+ +
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENA--RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 315
Query: 524 QVLTRAHEREF 534
L A+ F
Sbjct: 316 DALKLANRTGF 326
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 56.8 bits (135), Expect = 2e-09
Identities = 29/252 (11%), Positives = 69/252 (27%), Gaps = 10/252 (3%)
Query: 206 NAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL-- 263
L +L +QG + A ++A + + + +
Sbjct: 82 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 141
Query: 264 -RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTI 322
D + + + I + L +L + A + LN +
Sbjct: 142 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 201
Query: 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
+ ++ + + G A + + + + Q N
Sbjct: 202 LGN-GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA----NNHFLQGQWRN 256
Query: 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
+A ++E E + E + S++ + L Y + G+ +A+ +
Sbjct: 257 IARAQILLGEFEPAEIVLEELNENA--RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 314
Query: 443 KQVLTRAHEREF 454
L A+ F
Sbjct: 315 LDALKLANRTGF 326
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 56.8 bits (135), Expect = 2e-09
Identities = 31/249 (12%), Positives = 74/249 (29%), Gaps = 9/249 (3%)
Query: 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA 262
++P + + R + A + +E L + +
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180
Query: 263 LRSRKESYDIVKQA--KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDAL 320
+ D + ++ +LG+G + ++ + + ++ AAN L
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240
Query: 321 TIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL 380
N+ + N+A G+++ AE + + E + + D+ + L
Sbjct: 241 KPEF----ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNL 294
Query: 381 NNLALLCQNQSKYEEVERYYQRALEIYE-LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
L L + + +R AL++ + ++ E E
Sbjct: 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354
Query: 440 ILYKQVLTR 448
Q + R
Sbjct: 355 QHRAQRILR 363
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 19/154 (12%), Positives = 42/154 (27%), Gaps = 5/154 (3%)
Query: 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
A + N +E ER + ALE + + L +G+ + L
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALM 74
Query: 443 KQVLTRAHE--REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500
+Q A + A + + + + ++A ++ +
Sbjct: 75 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 134
Query: 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534
A + EAE + + +
Sbjct: 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.2 bits (155), Expect = 6e-12
Identities = 35/250 (14%), Positives = 71/250 (28%), Gaps = 7/250 (2%)
Query: 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATL 338
GS + + A + A +YR + + A + A ++K N T
Sbjct: 23 KLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTY 80
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398
+ G A + A++I K +L + Y +
Sbjct: 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG-EILENDLHDYAKAID 139
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458
Y+ A E Y + K A G+Y EA +Y +++ +
Sbjct: 140 CYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197
Query: 459 GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--GKYK 516
+ + + + A + + E DS + +L + +
Sbjct: 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257
Query: 517 EAEILYKQVL 526
E + +
Sbjct: 258 EHCKEFDNFM 267
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.9 bits (136), Expect = 2e-09
Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 6/182 (3%)
Query: 352 KEAEPLCKRALEIREKVLGKE---HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
K AE + + G + + A A + + + + + +A + +
Sbjct: 9 KRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQK 68
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
D+ T C+ G A + + R + K +
Sbjct: 69 KAGNEDE--AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDD-SNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+N + K E + K A G+Y EA +Y +++
Sbjct: 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186
Query: 528 RA 529
+
Sbjct: 187 SS 188
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (114), Expect = 9e-07
Identities = 29/233 (12%), Positives = 59/233 (25%), Gaps = 11/233 (4%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLED---CALRSRKESYDIVKQ 275
Y + +A +A + +K + EA T + C +
Sbjct: 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
QI G + ++ D + Y +A + A + ++ A
Sbjct: 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSN 158
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
A L G+Y EA + + ++ + L +
Sbjct: 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-RLSQWSLKDYFLKKGLCQLAATDAVA 217
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--GKYKEAEILYKQVL 446
R Q DS + +L + + E + +
Sbjct: 218 AARTLQEGQSEDP---NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 19/194 (9%), Positives = 46/194 (23%), Gaps = 5/194 (2%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
T + S G AV + A++ A + + +D K
Sbjct: 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA 137
Query: 276 AKV---AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA 332
A + A + +Y EA+++ + + +
Sbjct: 138 IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197
Query: 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392
+ A + + K L + A+ + +
Sbjct: 198 LKDY-FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID-AVNEGDSEQ 255
Query: 393 YEEVERYYQRALEI 406
E + + + +
Sbjct: 256 LSEHCKEFDNFMRL 269
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (146), Expect = 2e-10
Identities = 29/238 (12%), Positives = 57/238 (23%), Gaps = 40/238 (16%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
D+ A V+ + ++ L + A L+
Sbjct: 16 KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY--------ALDKKVEQDLW--N 62
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
+K + + R Q N L Y ++ + +
Sbjct: 63 HAFKNQITTLQGQAKNRANP-----NRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-- 115
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
D + L KQ + + GD I + R
Sbjct: 116 ------DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL-VHLGD---IARYR 165
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ E YY+ A ++ + + N LA +G + Y + +
Sbjct: 166 NQTSQA--ESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (142), Expect = 8e-10
Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 26/149 (17%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ L ++ Q + + + L +L + R
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----------ICQHCLVHLGDIARYRN 166
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+ +AE + A ++ P + N LA+L ++ + YY R++ +
Sbjct: 167 QTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--- 215
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
NL K + ++
Sbjct: 216 -----KFPFPAASTNLQKALSKALESRDE 239
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 3e-07
Identities = 19/219 (8%), Positives = 53/219 (24%), Gaps = 42/219 (19%)
Query: 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370
++A L A ++ A + + A ++ R ++ ++ L
Sbjct: 4 QSAQYLRQAEVLK--------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT------ 46
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
+ A L + + + + + N ++ + NL+
Sbjct: 47 --DLEYALDKKVEQDLWNH--------AFKNQITTLQGQAKNRANPNRSEVQANLSLFLE 96
Query: 431 K-QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYEL 489
G Y + + ++ ++ K +
Sbjct: 97 AASGFYTQLLQELCT----VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--- 149
Query: 490 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528
+L + + +AE Y+
Sbjct: 150 -------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 2e-06
Identities = 14/162 (8%), Positives = 39/162 (24%), Gaps = 36/162 (22%)
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT------- 447
+ +Y ++A + +++ +K A + + ++ Y+++L
Sbjct: 4 QSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYAL 52
Query: 448 ---------RAHEREFGAC--------DGDNKPIWQDRQKNKAKNREKYYQRALEIYELK 490
+ N+ Q + +Y + L+
Sbjct: 53 DKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTV 112
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532
D + L KQ + +
Sbjct: 113 FNVDLPC-RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH 153
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 27/252 (10%), Positives = 56/252 (22%), Gaps = 33/252 (13%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L + A L A+ K L + + A
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKH--------MEAWQYLGTTQAENEQELLAISAL 76
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
+R LE++ N + + + A + + G + +
Sbjct: 77 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 136
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGD------------------ 460
+K L S L + E + L+ +
Sbjct: 137 GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 195
Query: 461 ------NKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
+ K A + +++ NL + G
Sbjct: 196 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 255
Query: 515 YKEAEILYKQVL 526
++EA + + L
Sbjct: 256 HREAVEHFLEAL 267
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA---KQLNNLAL 385
E + NL + G ++EA AL ++ K G A + L L
Sbjct: 234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLG 412
+ + R L G
Sbjct: 294 ALSMLGQSDAYGAADARDLSTLLTMFG 320
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 3/88 (3%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAAT---LNNLAVLY 345
P L + + ++EA +AL ++ K+ G A + + L +
Sbjct: 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 295
Query: 346 GKRGKYKEAEPLCKRALEIREKVLGKEH 373
G+ R L + G
Sbjct: 296 SMLGQSDAYGAADARDLSTLLTMFGLPQ 323
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.001
Identities = 40/319 (12%), Positives = 86/319 (26%), Gaps = 25/319 (7%)
Query: 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279
++ +G AV L + A +++ EA + L + +E I +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAA---VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 80
Query: 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLN 339
++ +A +L + ++ + A
Sbjct: 81 ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 140
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERY 399
+ + E + L A+ + L +L +Y++
Sbjct: 141 RILGSLLSDSLFLEVKELFLAAVRLD------PTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG 459
+ AL + N N L + + +EA Y++ E + G
Sbjct: 195 FTAALSVRP--------NDYLLWNKLGATLANGNQSEEAVAAYRRA----LELQPGYIRS 242
Query: 460 DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN---NLASCYLKQGKYK 516
+ +++ AL + GP A ++N L G+
Sbjct: 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 302
Query: 517 EAEILYKQVLTRAHEREFG 535
+ L+ FG
Sbjct: 303 AYGAADARDLSTL-LTMFG 320
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 49.0 bits (115), Expect = 5e-07
Identities = 36/254 (14%), Positives = 63/254 (24%), Gaps = 44/254 (17%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
+LA+ + + + + L R T E A L VLY G A
Sbjct: 3 EVLAVPLQPTLQQEVILARMEQILASRALTDDER----AQLLYERGVLYDSLGLRALARN 58
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416
+A PD+ + N L + ++ + LE+
Sbjct: 59 DFSQA--------LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-------- 102
Query: 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA-------------------- 456
N G+ K A+ F +
Sbjct: 103 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 162
Query: 457 ----CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512
+ W + E+ L+ ++++T L YL
Sbjct: 163 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 222
Query: 513 GKYKEAEILYKQVL 526
G A L+K +
Sbjct: 223 GDLDSATALFKLAV 236
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 46.9 bits (110), Expect = 1e-06
Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
KE + A + + KY + Y + + E++ G + +++ L + +L
Sbjct: 9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 68
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE-- 488
L + T+A E A D+ ++ +A+ ++ A +E
Sbjct: 69 N----LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE-ILYKQVLTRAHERE 533
L++ P + + + C K ++ E + Y + + E++
Sbjct: 125 LEVNPQNKAA---RLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 45.3 bits (106), Expect = 3e-06
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 10/168 (5%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
+ + A ++ VY KY +A ++ E G + A+ + L +
Sbjct: 9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 68
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+A K L +++E + +++ LE+
Sbjct: 69 NLAMCYLKLREYTKA-VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE-ILYKQVLTRAHERE 453
+ + + C K ++ E + Y + + E++
Sbjct: 128 --------NPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 47.0 bits (111), Expect = 3e-06
Identities = 16/148 (10%), Positives = 47/148 (31%), Gaps = 23/148 (15%)
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364
+ + ++A LL +A+ K A+ ++ L G ++ A+ +++++
Sbjct: 8 SEGQLQQALELLIEAIKASPKD--------ASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424
P+ + L L + ++ + ++
Sbjct: 60 --------FPEYLPGASQLRHLVKAAQARKDFAQGAAT-------AKVLGENEELTKSLV 104
Query: 425 LASCYLKQGKYKEAEILYKQVLTRAHER 452
+ + Y++ L Q+ E+
Sbjct: 105 SFNLSMVSQDYEQVSELALQIEELRQEK 132
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 3e-05
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A L K+ + A +A E+ P + N A + + Y
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYN 55
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+ ++A+E+ + D +AK + + Y K+ KYK+A Y + L
Sbjct: 56 KCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREK 478
A + L + K+ + A Y + A E + +K +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDK----AKELDPTNMTYITNQAAVYFEKGDYNKCRE 59
Query: 479 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
++A+E+ + D +AK + + Y K+ KYK+A Y + L
Sbjct: 60 LCEKAIEVGR-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 8e-05
Identities = 28/206 (13%), Positives = 64/206 (31%), Gaps = 29/206 (14%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A +L N VL + +K A ++ N+ +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAVQ-----------DPHSRICFNIGCMYTILKNMT 53
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT-----RA 449
E E+ + R++ + ++A Y + KY A K+ L +
Sbjct: 54 EAEKAFTRSINRDK--------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 105
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLAS 507
+ + +++ +++A E + + + +K + A
Sbjct: 106 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH---SKIDKAM 162
Query: 508 CYLKQGKYKEAEILYKQVLTRAHERE 533
+ + K E ++ L R +ER+
Sbjct: 163 ECVWKQKLYEPVVIPVGRLFRPNERQ 188
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 10/166 (6%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
+E + + + + + KY++ Y++ + E + + K + + +L
Sbjct: 7 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 66
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE-- 488
L Q + A E A + D+ ++ +A ++ A ++
Sbjct: 67 ----NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 122
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE-ILYKQVLTRAHERE 533
L+L P++ K LA C + + E LY + R E E
Sbjct: 123 LQLYPNNKAA---KTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 20/150 (13%), Positives = 40/150 (26%), Gaps = 10/150 (6%)
Query: 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLN-NLAVLYGKRG 349
++ L + + ++ A L E + A A L G
Sbjct: 25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
K + A++ + L + + Q +Y++ ++A EI
Sbjct: 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW-QGLKEYDQALADLKKAQEI--- 140
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
+ L K K+ E
Sbjct: 141 -----APEDKAIQAELLKVKQKIKAQKDKE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 10/152 (6%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG-PDDSNVAKTKNNLASCY 429
+ +++ L N+ +E + Y + L E +D++ AK + SC
Sbjct: 21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 80
Query: 430 LKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE- 488
L G K ++ + E + D ++ + K Y +AL +
Sbjct: 81 LNIGACKLKMSDWQGAVDSCLEA----LEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 136
Query: 489 -LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
++ P+D + + L K K+ E
Sbjct: 137 AQEIAPEDKAI---QAELLKVKQKIKAQKDKE 165
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 11/111 (9%), Positives = 26/111 (23%), Gaps = 11/111 (9%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355
+ + + G + V ++
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGI 56
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
L + L K + + LA+ +YE+ +Y + L+
Sbjct: 57 VLLEELLPKGSK------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 33/259 (12%), Positives = 69/259 (26%), Gaps = 35/259 (13%)
Query: 290 PDVATMLNILALVYRDQNKYKEA---ANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
PD AT+ N V + K A L+ L E L N + + +L
Sbjct: 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS- 118
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+ EP R LE+ + L + + + Q E + +
Sbjct: 119 -----RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE-----REFGACDGDN 461
+ + + + + ++ + + + D ++
Sbjct: 174 N--------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225
Query: 462 KPIWQDRQKNKAK-----------NREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASC 508
+ W + + + Q LE + +L P++ T L
Sbjct: 226 QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 285
Query: 509 YLKQGKYKEAEILYKQVLT 527
KE + +
Sbjct: 286 LDPLLYEKETLQYFSTLKA 304
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.9 bits (84), Expect = 0.003
Identities = 39/190 (20%), Positives = 59/190 (31%), Gaps = 19/190 (10%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A L KY EA RA+ +P VA N AL + E
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPE 55
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
+ +RALE+ D K L C L+ Y EA ++ + A E+
Sbjct: 56 QALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
D R K + +R + EL A+ + L C
Sbjct: 108 NFGDDIPS---ALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEG 164
Query: 515 YKEAEILYKQ 524
+++ + Q
Sbjct: 165 HEDDGHIRAQ 174
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.87 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.78 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.75 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.71 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.71 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.66 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.64 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.43 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.35 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.23 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.21 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.91 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.41 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.67 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.36 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.29 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 92.27 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 91.95 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 91.91 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 89.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.47 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 80.47 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.2e-23 Score=205.32 Aligned_cols=297 Identities=21% Similarity=0.211 Sum_probs=228.2
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhh
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSR 266 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~ 266 (546)
+.....+....+|.++.++..+|.+|...|++++|+.+|+++++..|... |+++.|...+.......
T Consensus 18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 97 (388)
T d1w3ba_ 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccc
Confidence 33334444445677778888888888888888888888888887644322 44455544444333221
Q ss_pred hhhHHHHHHH---------------------------------------------HHHHHhccCCCCChhHHHHHHHHHH
Q psy597 267 KESYDIVKQA---------------------------------------------KVAQILGSGGHDHPDVATMLNILAL 301 (546)
Q Consensus 267 ~~~~~~~~~~---------------------------------------------~~~~~l~~~~~~~~~~~~~~~~la~ 301 (546)
.......... .............|..+.++..+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (388)
T d1w3ba_ 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcc
Confidence 1111100000 0000000001123555778899999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 302 VYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLN 381 (546)
Q Consensus 302 ~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 381 (546)
.+...|++++|...+.+++.. +|....++..+|.++...|++++|+..+.++.... +.....+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~ 241 (388)
T d1w3ba_ 178 VFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHG 241 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--------hhHHHHHH
Confidence 999999999999999999987 45557889999999999999999999999998873 66778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCC
Q psy597 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN 461 (546)
Q Consensus 382 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 461 (546)
.+|.++...|++++|+.+|++++++ .|..+.++.++|.++...|++++|+..|+.++...+... ....
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~ 309 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA----DSLN 309 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccc----hhhh
Confidence 9999999999999999999999998 778888999999999999999999999999988755432 3344
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 462 KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 462 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..+.++...|++++|+..|++++++ .|..+.++..+|.+|...|++++|+.+|++++++.|+.
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5666788899999999999999876 67788899999999999999999999999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.4e-21 Score=186.18 Aligned_cols=247 Identities=16% Similarity=0.137 Sum_probs=198.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
.+..|..++..|++++|+..|+++++ .+|..+.++.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~--------------------------------------------~~P~~~~a~~ 57 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQ--------------------------------------------QDPKHMEAWQ 57 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------------SCTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------hCCCCHHHHH
Confidence 46789999999999999999999998 4677788999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE-HPDV 376 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~ 376 (546)
.+|.++...|++++|+..|.+++.+ .|.....+..+|.+|...|++++|+..+.+++.......... ....
T Consensus 58 ~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 129 (323)
T d1fcha_ 58 YLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 129 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----
T ss_pred HHHHHHHHcCChHHHHHHHHhhhcc--------ccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhh
Confidence 9999999999999999999999988 344578899999999999999999999999987642110000 0000
Q ss_pred HH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 377 AK------QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 377 ~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.. ........+...+.+.+|+..|.+++.+ ......+.++..+|.++...|++++|+.+|++++...|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 203 (323)
T d1fcha_ 130 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203 (323)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHH------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH------hhcccccccchhhHHHHHHHHHHhhhhccccccccccc
Confidence 11 1112223345567789999999999987 11222467789999999999999999999999998865
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
... ......+.++...|++++|...|++++++ .|..+.++..+|.+|...|++++|+.+|++|+++.|
T Consensus 204 ~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 204 NDY----LLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccc----cchhhhhhcccccccchhHHHHHHHHHHH--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 34556777899999999999999999987 677788999999999999999999999999999998
Q ss_pred hhcc
Q psy597 531 EREF 534 (546)
Q Consensus 531 ~~~~ 534 (546)
++..
T Consensus 272 ~~~~ 275 (323)
T d1fcha_ 272 KSRG 275 (323)
T ss_dssp TC--
T ss_pred cChh
Confidence 7654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.3e-19 Score=176.88 Aligned_cols=281 Identities=12% Similarity=0.013 Sum_probs=225.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
++..++.....|.++...|++++|+.+|+++++..+. .+.+
T Consensus 8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---------------------------------------~~~~ 48 (366)
T d1hz4a_ 8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---------------------------------------GWFY 48 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---------------------------------------TCHH
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---------------------------------------CCcH
Confidence 3456777888899999999999999999999985332 1234
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
....++..+|.+|...|++++|+..|++++.+.+.. ++.+....++..++.++...|++..|...+.+++.+.....+
T Consensus 49 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~ 126 (366)
T d1hz4a_ 49 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL 126 (366)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Confidence 456789999999999999999999999999998876 677888899999999999999999999999999999988877
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------------------------------------cC
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK--------------------------------------LG 412 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~--------------------------------------~~ 412 (546)
...+..+..+..+|.++...|+++.|..++.+++...... .+
T Consensus 127 ~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 206 (366)
T d1hz4a_ 127 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 206 (366)
T ss_dssp TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC
T ss_pred chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 7778888889999999999999999999998877653221 01
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 413 ~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
...+....++..++.++...|++++|..++.+++...+.............+..+...|++..|...+++++......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 284 (366)
T d1hz4a_ 207 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-- 284 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--
Confidence 112333445566677777777777777777776665443332222233345667888999999999999999887764
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
...|....++..+|.+|..+|++++|..++++|+++.+..++
T Consensus 285 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~ 326 (366)
T d1hz4a_ 285 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 326 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCc
Confidence 346888999999999999999999999999999999876554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.6e-20 Score=185.65 Aligned_cols=230 Identities=23% Similarity=0.254 Sum_probs=202.4
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
.......|..+.++..+|..+...|++++|...+.++++.
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------------------------------------- 198 (388)
T d1w3ba_ 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---------------------------------------- 198 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh----------------------------------------
Confidence 3334455777889999999999999999999999999884
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
+|....++..+|.++...|++++|+..|.++... .+.....+..+|.++...|++++|+.+|++++++
T Consensus 199 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566778999999999999999999999999887 3444678899999999999999999999999987
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
.|....++.++|.++...|++++|+..|++++.. .|.....+..+|.++...|++++|+.+|++
T Consensus 267 --------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 330 (388)
T d1w3ba_ 267 --------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp --------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHH
Confidence 3777889999999999999999999999999988 777888999999999999999999999999
Q ss_pred HHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 445 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
++++.|+.. ......+.++...|++++|...|++|+++ +|....++.++|.+|..+||
T Consensus 331 al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 331 ALEVFPEFA----AAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTSCTTCH----HHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence 998766532 34556777899999999999999999987 78888999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.8e-18 Score=167.41 Aligned_cols=272 Identities=15% Similarity=0.104 Sum_probs=204.8
Q ss_pred CChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHH
Q psy597 196 TPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275 (546)
Q Consensus 196 ~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 275 (546)
....+...+......+|..+.+|+.+|.+|...|++++|+..|.+++++
T Consensus 34 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------------------------------- 82 (323)
T d1fcha_ 34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL------------------------------- 82 (323)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-------------------------------
Confidence 3455666777777788999999999999999999999999999999985
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-CHH------HHHHHHHHHHHHHHc
Q psy597 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN-HAA------VAATLNNLAVLYGKR 348 (546)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-~~~------~~~~~~~la~~~~~~ 348 (546)
.|.....+..+|.+|...|++++|+..+.+++...+...... ... ...........+...
T Consensus 83 -------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (323)
T d1fcha_ 83 -------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 149 (323)
T ss_dssp -------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred -------------ccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHh
Confidence 355567899999999999999999999999988643210000 000 001112223344566
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 349 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
+.+.+|...|.+++.+. ++ ...+.++..+|.++...|++++|+.+|++++.. .|..+.++.++|.+
T Consensus 150 ~~~~~a~~~~~~al~~~-----p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~ 215 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLD-----PT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGAT 215 (323)
T ss_dssp HHHHHHHHHHHHHHHHS-----TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh-----hc-ccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhc
Confidence 78889999999988873 21 224667889999999999999999999999988 77788899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHH
Q psy597 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP---DDSNVAKTKNNL 505 (546)
Q Consensus 429 y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~~~L 505 (546)
|...|++++|+.+|+++++..|... .....++.++...|++++|+..|.+|+.+..+.... .......++..+
T Consensus 216 ~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l 291 (323)
T d1fcha_ 216 LANGNQSEEAVAAYRRALELQPGYI----RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 291 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHhhccH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHH
Confidence 9999999999999999998755432 345567888999999999999999999885432211 111223456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 506 ASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 506 a~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+.++...|+.+.+.....+.+...
T Consensus 292 ~~al~~~~~~d~~~~~~~~~l~~l 315 (323)
T d1fcha_ 292 RLALSMLGQSDAYGAADARDLSTL 315 (323)
T ss_dssp HHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCHHHH
Confidence 888888898887776666666544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.1e-18 Score=161.75 Aligned_cols=242 Identities=11% Similarity=0.040 Sum_probs=200.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|....++..+|.++...+.+++|+..+.+|+++ .|
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------------------------------------------nP 74 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------------------------------------------NA 74 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------------------------------------------CT
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------------------------------------------CC
Confidence 5889999999999999999999999999999995 57
Q ss_pred hHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 291 DVATMLNILALVYRDQNK-YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
....+|+.+|.++...|+ +++|+.++++++.+ +|....+|.++|.++..+|++++|+.++.+++++
T Consensus 75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~----- 141 (315)
T d2h6fa1 75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ----- 141 (315)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----
T ss_pred CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh-----
Confidence 778899999999999874 99999999999998 5666899999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------HHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK------YKEAEILYK 443 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~------~~eA~~~~~ 443 (546)
+|....+|.++|.++...|++++|+.+|++++++ +|....+|+++|.++...+. +++|+..+.
T Consensus 142 ---dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~ 210 (315)
T d2h6fa1 142 ---DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 210 (315)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred ---hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHH
Confidence 4888999999999999999999999999999999 89999999999999998877 579999999
Q ss_pred HHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHH
Q psy597 444 QVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK--QGKYKEAEIL 521 (546)
Q Consensus 444 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~--~g~~~~A~~~ 521 (546)
+++...|.+. ......+..+. .....++...+..++.+- + .+....++..++.+|.. .++.+.+...
T Consensus 211 ~al~~~P~~~----~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~-----~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 211 EMIKLVPHNE----SAWNYLKGILQ-DRGLSKYPNLLNQLLDLQ-----P-SHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHSTTCH----HHHHHHHHHHT-TTCGGGCHHHHHHHHHHT-----T-TCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhCCCch----HHHHHHHHHHH-hcChHHHHHHHHHHHHhC-----C-CcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999866532 11222333332 333567777777777651 1 22334566677777754 3677778888
Q ss_pred HHHHHHHhhh
Q psy597 522 YKQVLTRAHE 531 (546)
Q Consensus 522 ~~~al~~~~~ 531 (546)
+++++.+.+.
T Consensus 280 ~~ka~~l~~~ 289 (315)
T d2h6fa1 280 LNKALELCEI 289 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.3e-17 Score=152.18 Aligned_cols=205 Identities=15% Similarity=0.110 Sum_probs=157.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.++..+.+++.+|.+|...|++++|+..|++++.+ .|..+.+++++|.+|...|++++|+.+|++++.+
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--- 100 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--- 100 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH---
Confidence 45778899999999999999999999999999998 4455788999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+|....++.++|.++...|++++|+..|++++++ .|........++.++...+..+.+.........
T Consensus 101 -----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 101 -----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -----HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--------ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4777889999999999999999999999999998 666666677788888888776665555444433
Q ss_pred hhhhcccCcccCCChhhHHHHhh------chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQK------NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~ 521 (546)
.. ... .......... +....+...+..+... .|....+++.+|.+|...|++++|+.+
T Consensus 168 ~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~ 231 (259)
T d1xnfa_ 168 SD-KEQ-------WGWNIVEFYLGNISEQTLMERLKADATDNTSL--------AEHLSETNFYLGKYYLSLGDLDSATAL 231 (259)
T ss_dssp SC-CCS-------THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cc-hhh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 21 111 1111111111 2223333333333333 466778899999999999999999999
Q ss_pred HHHHHHHhhhh
Q psy597 522 YKQVLTRAHER 532 (546)
Q Consensus 522 ~~~al~~~~~~ 532 (546)
|++|+...|.+
T Consensus 232 ~~~al~~~p~~ 242 (259)
T d1xnfa_ 232 FKLAVANNVHN 242 (259)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHHcCCCC
Confidence 99999876643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=8.6e-17 Score=153.12 Aligned_cols=196 Identities=12% Similarity=0.013 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.-+..|...|.+|...|+|++|+..|.+++++..... +++.
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--------------------------------------~~~~ 75 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--------------------------------------NEDE 75 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--------------------------------------CCHH
Confidence 44577899999999999999999999999999887755 6678
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+.++..+|.+|...|++++|+.+|++++.++... ++......++..+|.+|.. .|++++|+.+|++++++....
T Consensus 76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-- 151 (290)
T d1qqea_ 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-- 151 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--
Confidence 88999999999999999999999999999999887 6677778899999999865 699999999999999998765
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
++.+....++.++|.++..+|+|++|+.+|++++....... .........+.+.+.++...|++..|...+++++.+.+
T Consensus 152 ~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch-hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 44566788999999999999999999999999988743221 11234556678899999999999999999999887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=7.4e-17 Score=155.29 Aligned_cols=208 Identities=12% Similarity=0.081 Sum_probs=177.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 366 (546)
-.|....++..+|.++...+.+++|+..+++|+.+ .|....+|+++|.++...| ++++|+.++.+++++
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-- 107 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 107 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence 46889999999999999999999999999999998 5666889999999999987 599999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
+|....++.++|.++..+|++++|+.++.+++++ +|....++.++|.++...|++++|+..|++++
T Consensus 108 ------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al 173 (315)
T d2h6fa1 108 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 173 (315)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5889999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HhhhhcccCcccCCChhhHHHHhh------chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 447 TRAHEREFGACDGDNKPIWQDRQK------NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.+.|.+. ..+...+.++... +.+.+|+..+.+++.+ .|....++..++.++...| ..++..
T Consensus 174 ~~~p~n~----~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~~~~~~ 240 (315)
T d2h6fa1 174 KEDVRNN----SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-LSKYPN 240 (315)
T ss_dssp HHCTTCH----HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-GGGCHH
T ss_pred HHCCccH----HHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-hHHHHH
Confidence 9855432 1222333333332 3467788888888887 7888889999999876544 688999
Q ss_pred HHHHHHHHhhhh
Q psy597 521 LYKQVLTRAHER 532 (546)
Q Consensus 521 ~~~~al~~~~~~ 532 (546)
.+++++++.|..
T Consensus 241 ~~~~~~~l~~~~ 252 (315)
T d2h6fa1 241 LLNQLLDLQPSH 252 (315)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHhCCCc
Confidence 999998877653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=8.8e-16 Score=145.97 Aligned_cols=191 Identities=16% Similarity=0.102 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+.-+..|...|.+|...|+|++|+.+|.+++++..+. ++++..+.++.++|.+|...|++++|+.+|++++.+....
T Consensus 34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~- 110 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR- 110 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc-
Confidence 3457789999999999999999999999999999887 7778889999999999999999999999999999998776
Q ss_pred CCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 370 GKEHPDVAKQLNNLALLCQN-QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
++......++.++|.+|.. .|++++|+.+|+++++++... ++.+....++.++|.+|..+|+|++|+..|++++..
T Consensus 111 -~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 111 -GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 4556678889999999865 699999999999999998765 445667889999999999999999999999999987
Q ss_pred hhhcccCccc---CCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 449 AHEREFGACD---GDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 449 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
.+........ .....+.++...+++..|...+.++..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred CccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6554322211 1123344456677888887777777655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=9.1e-16 Score=142.99 Aligned_cols=181 Identities=18% Similarity=0.138 Sum_probs=138.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
.+|..+.+++.+|.+|...|++++|+..|++++.+ .
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------------------------------------------~ 67 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------------------------------------------R 67 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------C
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------------------------------------------C
Confidence 46788999999999999999999999999999985 4
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|..+.+++.+|.+|...|++++|+..|++++.+ .|....++.++|.+|...|++++|+..|+++++..
T Consensus 68 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 135 (259)
T d1xnfa_ 68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---- 135 (259)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc----
Confidence 566788999999999999999999999999998 34557789999999999999999999999999873
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------H----------------HHhcC---CCChHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI---------Y----------------ELKLG---PDDSNVAKT 421 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---------~----------------~~~~~---~~~~~~~~~ 421 (546)
|........++.++...+..+.+.......... . ..... ...|....+
T Consensus 136 ----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (259)
T d1xnfa_ 136 ----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 211 (259)
T ss_dssp ----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHH
Confidence 443444445555555544433333222211110 0 00000 003556678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 422 KNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 422 ~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
++++|.+|..+|++++|+.+|++++...|
T Consensus 212 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 212 NFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999999998644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=8.2e-16 Score=149.38 Aligned_cols=201 Identities=9% Similarity=-0.074 Sum_probs=158.5
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--YKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
+..+...|++.+|+.++++++.. +|....++..+|.++...++ +++|+..+.++++.. |...
T Consensus 80 ~~~~~~~~~~~~al~~~~~~l~~--------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------~~~~ 143 (334)
T d1dcea1 80 KSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNF 143 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCH
T ss_pred cchHHHHHHHHHHHHHHHHHHHh--------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--------chhh
Confidence 33455566789999999999987 45557788999988888765 899999999999983 5444
Q ss_pred HH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc----
Q psy597 378 KQ-LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER---- 452 (546)
Q Consensus 378 ~~-~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~---- 452 (546)
.+ +...|.++...|.+++|+.++++++.+ +|....+++++|.++..+|++++|...+.+++.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 215 (334)
T d1dcea1 144 HCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV 215 (334)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccccHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH
Confidence 44 567889999999999999999999998 88889999999999999999877655554444333221
Q ss_pred ----------------------ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy597 453 ----------------------EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510 (546)
Q Consensus 453 ----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~ 510 (546)
...........+..+...++..+|...+.+++.. +|....++..+|.+|.
T Consensus 216 ~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~ 287 (334)
T d1dcea1 216 QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALD 287 (334)
T ss_dssp HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHC
T ss_pred HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHH
Confidence 1122234445566677778888888887777755 8999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhh
Q psy597 511 KQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..|++++|+.+|++++++.|..
T Consensus 288 ~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 288 PLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGG
T ss_pred HCCCHHHHHHHHHHHHHHCccc
Confidence 9999999999999999998753
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.7e-14 Score=139.81 Aligned_cols=237 Identities=12% Similarity=0.007 Sum_probs=178.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+..+......|.++...|++++|+.++++++...+. .+.+....++..+|.+|...|++++|+.+|++++.+....
T Consensus 9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~- 84 (366)
T d1hz4a_ 9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH- 84 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence 455677788899999999999999999999987532 2334456789999999999999999999999999988765
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
++.+....++.+++.++...|++..|...+.+++.+......+..+....++..+|.++...|+++.|...+.+++...
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 163 (366)
T d1hz4a_ 85 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 163 (366)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 5567778899999999999999999999999999999888777788888899999999999999999999999999876
Q ss_pred hhcccCc-ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHH----------------------------------cC--
Q psy597 450 HEREFGA-CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELK----------------------------------LG-- 492 (546)
Q Consensus 450 ~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~----------------------------------~~-- 492 (546)
+...... .......+..+...+.+..+...+.++...+... ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 243 (366)
T d1hz4a_ 164 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243 (366)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 6533211 1112222333555666666666666665543322 11
Q ss_pred -CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 493 -PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 493 -~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.+.+.....+.++|.+|...|++++|..++++++.....
T Consensus 244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 283 (366)
T d1hz4a_ 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 283 (366)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 112333445555666666666666666666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8e-14 Score=123.28 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
.+++.|..+...|+|+.|+..|.++. +..+.+++++|.+|..+|++++|+.+|++|+++ +|
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~-----------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp 67 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQ-----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 67 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence 45577999999999999999987531 223567899999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 496 (546)
..+.+++++|.+|..+|++++|+..|++++...+.+...... .. +. ....
T Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~---~~-------~~--------------------~~~~ 117 (192)
T d1hh8a_ 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK---IL-------GL--------------------QFKL 117 (192)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG---GG-------TB--------------------CCEE
T ss_pred hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHH---Hh-------hh--------------------hccc
Confidence 999999999999999999999999999999865443211000 00 00 0022
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 497 ~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
....+++++|.+|...|++++|...+++|+.+.++.
T Consensus 118 ~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 118 FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 345677899999999999999999999998876553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.3e-13 Score=119.22 Aligned_cols=138 Identities=19% Similarity=0.182 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
.+++.|..+...|+|+.|+..|.++. +.+ +.+++++|.+|..+|++++|+.+|++++++ +|
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~--------~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp 67 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 67 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcC--------CCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence 45577999999999999999987631 222 467999999999999999999999999998 48
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------C-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL-------G-PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~-------~-~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
..+.+++++|.++..+|++++|+..|++|+...+... + ........+++++|.+|...|++++|+..+..++
T Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999997532110 0 0112346789999999999999999999999999
Q ss_pred Hhhhh
Q psy597 447 TRAHE 451 (546)
Q Consensus 447 ~~~~~ 451 (546)
...++
T Consensus 148 ~~~~~ 152 (192)
T d1hh8a_ 148 SMKSE 152 (192)
T ss_dssp TTCCS
T ss_pred hcCCC
Confidence 87543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.3e-12 Score=110.11 Aligned_cols=99 Identities=25% Similarity=0.257 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+..+...|..|+..|+|++|+.+|.+++.+ +|....+|.++|.++...|++++|+..|++++++
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-------- 73 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------- 73 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence 556778899999999999999999999998 4888999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+|....++.++|.+|..+|++++|+..|++++.+.
T Consensus 74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.2e-12 Score=110.23 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..+...|..|+..|+|++|+..|++++.+ +|....+|.++|.++..+|++++|+..|++++++
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------ 73 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 73 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence 34566888999999999999999999999998 4566889999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY--LKQGKYKEAEILYKQVL 446 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y--~~~g~~~eA~~~~~~al 446 (546)
.|....++.++|.++...|++++|+.+|++++.+ +|....++..++.+. ...+.+++|+.......
T Consensus 74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~ 141 (159)
T d1a17a_ 74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 141 (159)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 4888899999999999999999999999999998 666667777776664 34455666665544433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=1.2e-13 Score=133.85 Aligned_cols=200 Identities=8% Similarity=-0.105 Sum_probs=147.3
Q ss_pred CChhHHHHHHHHHHHHHHhhc--HHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNK--YKEAANLLNDALTIREKTLGENHAAVAAT-LNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~g~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.+|....++..+|.++...++ +++|+..+.+++... |....+ +...|.++...|.+++|+.++++++.+
T Consensus 102 ~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~ 173 (334)
T d1dcea1 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (334)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc
Confidence 356677778888888877664 889999999998873 222333 457788888899999999999999887
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------cCCC-------------ChHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK---------LGPD-------------DSNVAKTK 422 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~---------~~~~-------------~~~~~~~~ 422 (546)
+|....+++++|.++...|++++|+..+.+++.+.... .++. .|.....+
T Consensus 174 --------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~ 245 (334)
T d1dcea1 174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC 245 (334)
T ss_dssp --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSC
T ss_pred --------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHH
Confidence 47788889999999999998877765555544442211 0111 11222233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 502 (546)
..+|.++...|++.+|+..+.+++...|... ......+.++...|++++|..+|++++.+ +|.....|
T Consensus 246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--------dP~~~~y~ 313 (334)
T d1dcea1 246 ELSVEKSTVLQSELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFSTLKAV--------DPMRAAYL 313 (334)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHCTGGGHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCchHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcccHHHH
Confidence 3567888888999999999998887655432 34555677788999999999999999998 89888899
Q ss_pred HHHHHHHHHcCCH
Q psy597 503 NNLASCYLKQGKY 515 (546)
Q Consensus 503 ~~La~~y~~~g~~ 515 (546)
..|+..+.....+
T Consensus 314 ~~L~~~~~~e~~~ 326 (334)
T d1dcea1 314 DDLRSKFLLENSV 326 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHH
Confidence 9998888754333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.4e-12 Score=105.03 Aligned_cols=112 Identities=19% Similarity=0.264 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.-+...|..++..|+|++|+..|.+++.. .|..+.++.++|.+|...|++++|+..|.+++.+ .
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~ 67 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------K 67 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------c
Confidence 33667899999999999999999999988 4555889999999999999999999999999998 4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
|....++.++|.++..+|++++|+.+|++++++ .|....++..++.+.
T Consensus 68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 115 (117)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Confidence 788899999999999999999999999999998 777777888877764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.7e-12 Score=103.35 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
-+...|..++..|+|++|+.+|.+++.. .|..+.++.++|.+|...|++++|+..|.+++.+ +|
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p 68 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP 68 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------cc
Confidence 3567899999999999999999999998 4888999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
..+.++.++|.++..+|++++|+..|++++...|
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 102 (117)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred chhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8899999999999999999999999999998743
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=9.2e-12 Score=107.40 Aligned_cols=141 Identities=23% Similarity=0.264 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN-------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.+..+...|..++..|+|++|+..|.+++.+.+...+.. .+....++.++|.+|...|+|++|+.++++++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 466788899999999999999999999999865442222 2334567889999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI-LYK 443 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~-~~~ 443 (546)
+|....+++++|.+|..+|++++|+.+|++++++ +|....+...++.+....+...+... .|.
T Consensus 92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~ 155 (170)
T d1p5qa1 92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKKLYA 155 (170)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999999 77778888889988877776665443 355
Q ss_pred HHHHh
Q psy597 444 QVLTR 448 (546)
Q Consensus 444 ~al~~ 448 (546)
+.+..
T Consensus 156 ~~f~~ 160 (170)
T d1p5qa1 156 NMFER 160 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=5.2e-12 Score=112.13 Aligned_cols=103 Identities=28% Similarity=0.268 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+..+...|..++..|+|++|+.+|.+++.+ .|..+.+|.++|.+|...|++++|+.+|++|+++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence 445778999999999999999999999999 4888999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+|..+.++.++|.+|..+|++++|+..|++++.+.|...
T Consensus 68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 888999999999999999999999999999999987654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.34 E-value=1.6e-11 Score=105.61 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN-------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
..+..+...|..++..|+|.+|+..|.+|+...+...+.. .+....++.++|.+|..+|++++|+.++++++.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 3467788999999999999999999999998765432221 233567788999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH-HHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK-EAEILY 442 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~-eA~~~~ 442 (546)
+ +|....+++++|.++..+|++++|+..|.+++.+ +|....+...++.+....+.+. .....|
T Consensus 93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~ 156 (168)
T d1kt1a1 93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTY 156 (168)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8 4888999999999999999999999999999998 7778888888998887777654 355666
Q ss_pred HHHHHhhh
Q psy597 443 KQVLTRAH 450 (546)
Q Consensus 443 ~~al~~~~ 450 (546)
...+....
T Consensus 157 ~~~f~~~~ 164 (168)
T d1kt1a1 157 ANMFKKFA 164 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhh
Confidence 66665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=5.3e-12 Score=112.08 Aligned_cols=104 Identities=27% Similarity=0.305 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
+..+...|..++..|+|++|+.+|++|+.+ +|..+.++.++|.+|...|++++|+..|++++.+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------- 67 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence 445678999999999999999999999999 8889999999999999999999999999999876
Q ss_pred ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
+|..+.++.++|.+|..+|++++|+.+|++|+.+.|....
T Consensus 68 --------------------------------------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 68 --------------------------------------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp --------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 5667788999999999999999999999999999886543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.6e-11 Score=104.55 Aligned_cols=109 Identities=21% Similarity=0.184 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH-------PDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.+..+...|..++..|+|++|+.+|++++.......+..+ +....++.++|.+|..+|++++|+.++++++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 3667889999999999999999999999988533222111 234567889999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|..+.+++.+|.+|..+|++++|+..|++++.+.|
T Consensus 92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999999999999743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.32 E-value=5.3e-11 Score=100.96 Aligned_cols=140 Identities=16% Similarity=0.058 Sum_probs=108.5
Q ss_pred HHHHHHHH--HHHHHHhhcHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 292 VATMLNIL--ALVYRDQNKYKEAANLLNDALTIREKTLGE----NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 292 ~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~g~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.+.++..+ |..++..|+|++|+..|++++++.+..... ..+..+.++.++|.+|..+|+|++|+..+++++.+.
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 44555555 788889999999999999999998765211 123457789999999999999999999999999998
Q ss_pred HHhcCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 366 EKVLGKE---HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 366 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
.+..... .+....+++++|.+|..+|++++|+..|++|+++.....+. .+........++..+.++
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~-~~~~~~~~~~~~~~l~~l 154 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE-TPGKERMMEVAIDRIAQL 154 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC-CTTHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch-HHHHHHHHHHHHHHHHHc
Confidence 7764322 34566789999999999999999999999999998776443 344445555555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.30 E-value=4e-11 Score=103.14 Aligned_cols=108 Identities=21% Similarity=0.216 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE-------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.+..+...|..++..|+|.+|+.+|.+++.......... .+....++.++|.||..+|++++|+.++++++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 366788899999999999999999999998753322111 2335667889999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+|....+++++|.+|..+|++++|+..|.+++.+.
T Consensus 94 --------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 94 --------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred --------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999863
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=7.2e-11 Score=96.39 Aligned_cols=105 Identities=18% Similarity=0.325 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..+..+|..++..|+|++|+.+|.+++++ +|....++.++|.+|..+|+|++|+..|++++++..... ..
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~ 74 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED 74 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence 456778999999999999999999999998 345577999999999999999999999999999876542 22
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.+..+.++..+|.++...+++++|+.+|.+++..
T Consensus 75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3556789999999999999999999999999987
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.29 E-value=1.7e-11 Score=103.76 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH--------AAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
..+..+...|..++..|+|.+|+..|.+++.+.......+. +....++.++|.+|..+|++++|+.+|.+++
T Consensus 15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al 94 (153)
T d2fbna1 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 94 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence 44566788999999999999999999999987654322222 2234678899999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
++ +|....+++++|.++..+|++++|+.+|++++++ +|....+...++.+..+.+
T Consensus 95 ~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 95 KI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHH
T ss_pred cc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHH
Confidence 98 4888999999999999999999999999999999 7877888888887766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2.4e-11 Score=99.28 Aligned_cols=108 Identities=22% Similarity=0.380 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
+..+.++|..++..|+|++|+.+|.+++++ +|..+.++.++|.+|..+|+|++|+..|++++.+.+....
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~-- 73 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-- 73 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH--
Confidence 556778999999999999999999999999 7888899999999999999999999999999998665421
Q ss_pred ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
..+....++..+|.++...+++++|+.+|++++...+.
T Consensus 74 -------------------------------------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 74 -------------------------------------DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 13455678899999999999999999999999886543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.27 E-value=1.2e-11 Score=98.50 Aligned_cols=95 Identities=14% Similarity=0.022 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 415 (546)
...+.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++++ +
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~ 80 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 80 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------c
Confidence 34578899999999999999999999998 4888999999999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 416 ~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
|....++.++|.+|..+|++++|++.+++.+
T Consensus 81 p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 81 PKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.27 E-value=3.2e-11 Score=103.89 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG--------ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.+..+...|..++..|+|.+|+..|.+++...+.... .-.|....++.++|.+|..+|+|++|+..|.++++
T Consensus 26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 105 (169)
T d1ihga1 26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 105 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence 3445677899999999999999999999987543311 12466788899999999999999999999999998
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
+ +|..+.+++++|.+|..+|++++|+..|++++++ +|....+...++.++.......++
T Consensus 106 ~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 106 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred h--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8 4888999999999999999999999999999999 777778888888888776655554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.26 E-value=7.7e-11 Score=99.95 Aligned_cols=142 Identities=17% Similarity=0.107 Sum_probs=107.4
Q ss_pred HHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 214 RLRTLHNL--VIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 214 ~~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
...++..+ |..++..|+|++|+..|++++++.+....... ....+.
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~--------------------------------~~~~~~ 53 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA--------------------------------FDHAGF 53 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC--------------------------------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh--------------------------------cccchh
Confidence 34455544 88999999999999999999998776541100 111244
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE---NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.+.++.++|.+|...|++++|+..+++++.+.++.... ..+....+++++|.+|..+|++++|+..|++++++..+.
T Consensus 54 ~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 54 DAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 57889999999999999999999999999998876322 234567789999999999999999999999999998776
Q ss_pred cCCCChHHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQ 388 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~ 388 (546)
.+.. +........++.-+.
T Consensus 134 ~~~~-~~~~~~~~~~~~~l~ 152 (156)
T d2hr2a1 134 KGET-PGKERMMEVAIDRIA 152 (156)
T ss_dssp CSCC-TTHHHHHHHHHHHHH
T ss_pred hchH-HHHHHHHHHHHHHHH
Confidence 4432 344444444444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=9.9e-13 Score=134.24 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCC
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD 494 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 494 (546)
+|.....+.++|.++...|++++|...+.+++...+. ......|..+...++++.|..+|.+|+.+
T Consensus 116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-------- 181 (497)
T d1ya0a1 116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ------HCLVHLGDIARYRNQTSQAESYYRHAAQL-------- 181 (497)
T ss_dssp ---------------------------CCHHHHHHHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHcccHHHHHHHHHHHHHH--------
Confidence 3444444445555555555555555544444443221 11223344444445555555555555544
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 495 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 495 ~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.|....++.+||.+|...|++.+|+.+|.+|+..
T Consensus 182 ~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4555555666666666666666666666665544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.4e-12 Score=131.38 Aligned_cols=266 Identities=11% Similarity=0.029 Sum_probs=143.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHH-hhhhhhHHHHHHHHHHHHhccC
Q psy597 207 AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL-RSRKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 207 ~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~ 285 (546)
+..-.|+.+.++.++|.++..+|++++| |++++..-+... .+........ ..+..... . .......
T Consensus 12 A~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a----~~~~~e~~Lw~~~y~~~ie---~---~r~~~k~ 78 (497)
T d1ya0a1 12 AEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYA----LDKKVEQDLWNHAFKNQIT---T---LQGQAKN 78 (497)
T ss_dssp HHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHH----HHHTHHHHHHHHHTHHHHH---H---HHHHHSC
T ss_pred HHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhH----HHHhHHHHHHHHHHHHHHH---H---HHHhccc
Confidence 3334566677888899999999999876 777776533221 1110000000 00111111 1 1111111
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.............++.++...+.|..|+..+.+++.+ .|.....+.++|.++...|++++|...+.+++...
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------CCHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 1111111222233466666677788888777777765 35557789999999999999999999999998763
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+ ..++.++|.++...|++++|+.+|++|+.+ .|..+.++++||.+|...|++.+|+.+|.++
T Consensus 151 --------~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra 212 (497)
T d1ya0a1 151 --------C--QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp --------H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------H--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 467889999999999999999999999999 8999999999999999999999999999999
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKL-----GPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~-----~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
+...++. ..|...+.++.....+.. ....+........+..+++....++....
T Consensus 213 l~~~~~~---------------------~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~ 271 (497)
T d1ya0a1 213 IAVKFPF---------------------PAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP 271 (497)
T ss_dssp HSSSBCC---------------------HHHHHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHH
T ss_pred HhCCCCC---------------------HHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHHHHHHHhCCchhhHHH
Confidence 9864322 122222222221111110 01123344455556666667777777777
Q ss_pred HHHHHHHHhhhh
Q psy597 521 LYKQVLTRAHER 532 (546)
Q Consensus 521 ~~~~al~~~~~~ 532 (546)
+.++.+......
T Consensus 272 ~~~~~~~~l~~~ 283 (497)
T d1ya0a1 272 LREKLEEQFKEL 283 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666555433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.23 E-value=8.3e-11 Score=101.22 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--------KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+..+...|..++..|+|.+|+..|.+++........ ...|....++.++|.++...|++++|+..|.+++++
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence 334567789999999999999999999987543211 113667888999999999999999999999999998
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|..+.+++++|.+|..+|++++|+..|++++++.|
T Consensus 107 --------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 107 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999999999999743
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.23 E-value=5.7e-11 Score=100.33 Aligned_cols=110 Identities=18% Similarity=0.081 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH--------PDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
.+..+...|..++..|+|.+|+..|.+++.+......... +....++.|+|.+|..+|++++|+.++.++++
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 3556778899999999999999999999987543322211 22356788999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+ +|....+++++|.+|..+|++++|+..|++++.+.|.
T Consensus 96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9 8889999999999999999999999999999998543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.22 E-value=3.2e-11 Score=96.01 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~ 457 (546)
...+.+|.++...|++++|+..|++++.+ +|..+.++..+|.++...|++++|+.+|++++.+
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------- 79 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------- 79 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc---------
Confidence 34578999999999999999999999999 8888999999999999999999999999999986
Q ss_pred cCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 458 DGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
+|....++..+|.+|..+|++++|++++++.+
T Consensus 80 -------------------------------------~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 80 -------------------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp -------------------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------ccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 67778899999999999999999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.9e-11 Score=98.57 Aligned_cols=114 Identities=10% Similarity=0.005 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..++..+...+++++|.+.|++++.+ .|..+.+++++|.++...+ ++++|+..|++++... ..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~------~~ 68 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------SK 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------CH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc------CC
Confidence 45677888999999999999999998 4555889999999998754 5567899888888652 12
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
|....+++++|.+|...|++++|+.+|++++++ +|....+...++.+..+.
T Consensus 69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHH
Confidence 455679999999999999999999999999999 888888888887776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=8.4e-10 Score=104.81 Aligned_cols=196 Identities=14% Similarity=0.023 Sum_probs=148.2
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.+..++|...|++++... .|.....+...+.++...|+++.|...|++++... +.....++..++.
T Consensus 77 ~~~~~~a~~i~~ral~~~-------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-------~~~~~~~w~~~~~ 142 (308)
T d2onda1 77 KLFSDEAANIYERAISTL-------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMK 142 (308)
T ss_dssp HHHHHHHHHHHHHHHTTT-------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-------cCChHHHHHHHHH
Confidence 345577777787777532 23345678889999999999999999999998763 1223456788899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhcccCcccCCChhh
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL-KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPI 464 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~-~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 464 (546)
+....|+++.|+..|.+++.. .|.....+...|.... ..|+.+.|..+|+.++...+.+. ......+
T Consensus 143 ~~~~~~~~~~ar~i~~~al~~--------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~----~~w~~y~ 210 (308)
T d2onda1 143 FARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP----EYVLAYI 210 (308)
T ss_dssp HHHHHHCHHHHHHHHHHHHTS--------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH----HHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH----HHHHHHH
Confidence 999999999999999999876 5555566777777654 46899999999999999765432 1222334
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 465 WQDRQKNKAKNREKYYQRALEIYELKLGPDDS-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~-~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
......|+.+.|...|++|+... +.+| .....+..........|+.+.+..+++++.+.+|+.
T Consensus 211 ~~~~~~g~~~~aR~~fe~ai~~~-----~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 211 DYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCChHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 44667899999999999998641 1233 234567777788888899999999999999999765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.12 E-value=1.8e-09 Score=99.95 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
|.+++.+|..++..|++++|+.+|+++.+. ..+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------------------------------------------g~~~ 35 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------------------------------------------KENS 35 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------------------------------------TCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------------------------------------------CCHH
Confidence 578999999999999999999999999762 2346
Q ss_pred HHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 295 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 366 (546)
+++.||.+|.. ..++..|..++..+... .+ +.+...+|.++.. ..+.+.|...++++....
T Consensus 36 A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-------~~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g- 104 (265)
T d1ouva_ 36 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------NY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK- 104 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHhhcccccc-------cc---cchhhccccccccccccchhhHHHHHHHhhhhhhh-
Confidence 78889999987 56899999999987754 12 3456677777765 568899999999987652
Q ss_pred HhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEA 438 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA 438 (546)
+ ..+...+|..+.. ......|...+.+.... ....++.+||.+|.. ..+...+
T Consensus 105 -------~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~ 165 (265)
T d1ouva_ 105 -------Y--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKA 165 (265)
T ss_dssp -------C--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred -------h--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc----------cccchhhhhhhhhccCCCcccccccc
Confidence 2 3345566666664 45567777777766543 234567889999986 4566777
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK--- 511 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~--- 511 (546)
..+++.+.+.. .......++..+.. ..++..|..+|.++.+. ..+.++++||.+|..
T Consensus 166 ~~~~~~a~~~g------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~LG~~y~~G~g 229 (265)
T d1ouva_ 166 LASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----------ENGGGCFNLGAMQYNGEG 229 (265)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHTTSS
T ss_pred hhhhhcccccc------ccccccchhhhcccCcccccchhhhhhhHhhhhcc----------cCHHHHHHHHHHHHcCCC
Confidence 77777776531 11223344444443 45788888888888653 235688999999986
Q ss_pred -cCCHHHHHHHHHHHHHHhhh
Q psy597 512 -QGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 512 -~g~~~~A~~~~~~al~~~~~ 531 (546)
..++++|..+|++|......
T Consensus 230 ~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 230 VTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSCCSTTHHHHHHHHHHHTCH
T ss_pred CccCHHHHHHHHHHHHHCcCH
Confidence 44899999999999887543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.7e-10 Score=92.95 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
..++..+...+++++|...|++++.. .|..+.++++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------------------------------------------~p~~~~~~~n 38 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--------------------------------------------GSVSKSTQFE 38 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------SCCCHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--------------------------------------------CCCCHHHHHH
Confidence 35677888999999999999999984 5667788999
Q ss_pred HHHHHHH---hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 299 LALVYRD---QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 299 la~~~~~---~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+|.++.. .+++.+|+..|++++.. ...+....+++++|.+|...|++++|+.+|++++++ .|.
T Consensus 39 ~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~ 104 (122)
T d1nzna_ 39 YAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQ 104 (122)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhc------cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcC
Confidence 9999976 56777899999998865 334555779999999999999999999999999999 477
Q ss_pred HHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQN 389 (546)
Q Consensus 376 ~~~~~~~la~~~~~ 389 (546)
...+...++.+...
T Consensus 105 ~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 105 NNQAKELERLIDKA 118 (122)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=7.9e-10 Score=104.99 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|.....+...+.++...|+++.|...|++++... +.+ ...++...+......|+++.|..+|.+++...
T Consensus 95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~~~--~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--- 164 (308)
T d2onda1 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--- 164 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-----cCC--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 35556678888999999999999999999998652 112 24467888899999999999999999998764
Q ss_pred cCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQ-NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|.....+...|.... ..|+.+.|...|++++.. .|.....+...+..+...|+++.|..+|++++.
T Consensus 165 -----~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 165 -----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp -----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 555566777777654 468999999999999987 566677888899999999999999999999998
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 488 (546)
..+..+.................|+...+...++++.+.+.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 65432211111111112224556888888888888877753
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.01 E-value=4.1e-10 Score=93.86 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=89.8
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhcCC
Q psy597 302 VYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR----------GKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 302 ~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.|.+.+.|++|+..|++++.+ +|..+.+++++|.++... +.+++|+..|++++++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------- 70 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------- 70 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence 456788999999999999998 566689999999999854 4568899999999988
Q ss_pred CChHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 372 EHPDVAKQLNNLALLCQNQSK-----------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~-----------~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
+|....+++++|.+|..+|+ +++|+.+|++++++ +|....++..|+.+....
T Consensus 71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTHH
T ss_pred -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHHHHH
Confidence 48889999999999988764 68899999999988 888888888888775433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.3e-09 Score=83.44 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+.-++.+|.+++..|+|.+|+.+|++|+++..... ...+..+.++.++|.++...|++++|+.+|++++++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence 45678999999999999999999999999875542 223567889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHc
Q psy597 415 DSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~ 432 (546)
+|....++.|++.+...+
T Consensus 76 ~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 76 DPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHh
Confidence 888899999998766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.95 E-value=6.7e-10 Score=92.54 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=66.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhcCC
Q psy597 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ----------SKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
.|.+.+.|++|+..|++++++ +|..+.+++++|.++... +.+++|+..|++|+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------- 70 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------- 70 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence 456778899999999999999 589999999999999854 4568899999999999
Q ss_pred CChHHHHHHHHHHHHHHHcCC
Q psy597 414 DDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~ 434 (546)
+|..+.+++++|.+|..+|+
T Consensus 71 -~P~~~~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 71 -DPKKDEAVWCIGNAYTSFAF 90 (145)
T ss_dssp -CTTCHHHHHHHHHHHHHHHH
T ss_pred -cchhhHHHhhHHHHHHHccc
Confidence 89999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5e-09 Score=80.07 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.-++.+|.+++..|+|.+|+.+|++|+.+.+... ...+..+.++.++|.++...|++++|+.+|++++++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-------- 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence 34578999999999999999999999999987652 224456789999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQN 389 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~ 389 (546)
.|....++.+++.+...
T Consensus 76 ~P~~~~a~~Nl~~~~~~ 92 (95)
T d1tjca_ 76 DPEHQRANGNLKYFEYI 92 (95)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 47778899998876554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.61 E-value=2.5e-06 Score=78.03 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 368 (546)
+.+++.+|..+...+++.+|+.+|+++.+. ++ ..+++.||.+|.. ..++..|..++..+...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~------g~----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~---- 67 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL------KE----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---- 67 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CC----HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence 467899999999999999999999999764 22 5678999999997 67999999999998764
Q ss_pred cCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEI 440 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA~~ 440 (546)
....+..++|.++.. .++.+.|...++++... .+ ..+...++..+.. ......|..
T Consensus 68 ------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~--------g~--~~a~~~l~~~~~~~~~~~~~~~~a~~ 131 (265)
T d1ouva_ 68 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KY--AEGCASLGGIYHDGKVVTRDFKKAVE 131 (265)
T ss_dssp ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ------cccchhhccccccccccccchhhHHHHHHHhhhhhh--------hh--hhHHHhhcccccCCCcccchhHHHHH
Confidence 234456778877765 56889999999998775 22 2345667766665 455777777
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----c
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----Q 512 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~----~ 512 (546)
.+......... .....++..+.. ..+...+..++..+.+ .....+.+++|.+|.. .
T Consensus 132 ~~~~~~~~~~~------~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 132 YFTKACDLNDG------DGCTILGSLYDAGRGTPKDLKKALASYDKACD----------LKDSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp HHHHHHHTTCH------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTCSSC
T ss_pred Hhhhhhccccc------chhhhhhhhhccCCCcccccccchhhhhcccc----------ccccccccchhhhcccCcccc
Confidence 77776653211 112222333332 2334445555555542 2346788999999987 6
Q ss_pred CCHHHHHHHHHHHHHH
Q psy597 513 GKYKEAEILYKQVLTR 528 (546)
Q Consensus 513 g~~~~A~~~~~~al~~ 528 (546)
.++++|+.+|+++.+.
T Consensus 196 ~d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 196 KNFKEALARYSKACEL 211 (265)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhcc
Confidence 7999999999999775
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.54 E-value=6.9e-07 Score=76.49 Aligned_cols=132 Identities=15% Similarity=0.033 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc-hhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK-YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
+....+.+...|......|++++|+..|.+|+.+++...-. ........ ..... -.
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~--------------~~r~~---------l~ 63 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVE--------------PFATA---------LV 63 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHH--------------HHHHH---------HH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHH--------------HHHHH---------HH
Confidence 45678899999999999999999999999999875432200 00000000 00000 12
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+....++..++.++...|++++|+.++++++.+ +|....+|..++.++...|++.+|+..|+++.....+.+
T Consensus 64 ~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL 135 (179)
T d2ff4a2 64 EDKVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 135 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 556788999999999999999999999999998 566688999999999999999999999999998877766
Q ss_pred CCCC
Q psy597 370 GKEH 373 (546)
Q Consensus 370 ~~~~ 373 (546)
|-++
T Consensus 136 G~~P 139 (179)
T d2ff4a2 136 GIDP 139 (179)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.52 E-value=4.6e-07 Score=77.64 Aligned_cols=117 Identities=12% Similarity=0.009 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN--------------HAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~--------------~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
......+...|......|++++|...|.+|+.+++.....+ .+....++.+++.++...|++++|+
T Consensus 8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 45567788999999999999999999999999854221110 1334578899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
.++++++.. +|....++..++.++...|++.+|+..|+++...+...+|.+
T Consensus 88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~ 138 (179)
T d2ff4a2 88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 138 (179)
T ss_dssp HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999 588999999999999999999999999999999877766554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.51 E-value=7.2e-08 Score=88.28 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=94.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
....|++++|+..|+++++. +|.....+..+|.+++..|++++|+..|++++++ +|....++..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~~~ 69 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGASQ 69 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence 45668888888888888877 4777888888888888888888888888888887 7777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy597 425 LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN 504 (546)
Q Consensus 425 La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 504 (546)
++.++...+..+++...+... .....|.....+..
T Consensus 70 l~~ll~a~~~~~~a~~~~~~~---------------------------------------------~~~~~p~~~~~~l~ 104 (264)
T d1zbpa1 70 LRHLVKAAQARKDFAQGAATA---------------------------------------------KVLGENEELTKSLV 104 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCCCE---------------------------------------------ECCCSCHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHhhhh---------------------------------------------hcccCchHHHHHHH
Confidence 777766554443332111100 00124566677788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 505 LASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 505 La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
.+.++...|++++|...++++.+..|..+.
T Consensus 105 ~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 105 SFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 899999999999999999999999877643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.41 E-value=2.1e-07 Score=85.16 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=105.5
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL 380 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 380 (546)
.-....|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++++ .|.....+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~ 67 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA 67 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 3456789999999999999987 5667899999999999999999999999999998 48888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
..++.++...+..+++...+.+... ...|.....+...+.++...|++++|...+.++.+..+..
T Consensus 68 ~~l~~ll~a~~~~~~a~~~~~~~~~-------~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 68 SQLRHLVKAAQARKDFAQGAATAKV-------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEC-------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhccccHHHHHHhhhhhc-------ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 8999888766666554443332221 2356667788889999999999999999999999987654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.72 E-value=9.6e-05 Score=59.27 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=85.7
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
.++++|+.+|+++.+. .+ ..+...++. ....++++|+.+++++.+. ..+.+.+.||.+
T Consensus 7 kd~~~A~~~~~kaa~~------g~----~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~ 64 (133)
T d1klxa_ 7 KDLKKAIQYYVKACEL------NE----MFGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 64 (133)
T ss_dssp HHHHHHHHHHHHHHHT------TC----TTHHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC------CC----hhhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHh
Confidence 5789999999999765 22 224455554 4457899999999998765 235678889999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy597 387 CQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEILYKQVLTR 448 (546)
Q Consensus 387 ~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA~~~~~~al~~ 448 (546)
|.. ..++++|+.+|+++.+. ..+.+.++||.+|.. ..++.+|+.+|+++.+.
T Consensus 65 y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 65 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 886 56799999999999875 134568899999987 56899999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.67 E-value=0.00015 Score=58.02 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
++.+|. ....++++|+.+|+++.+. + + +.+.+.||.+|.. ..++.+|+.+|+++.+..
T Consensus 28 ~~~l~~--~~~~~~~~a~~~~~~aa~~------g-~---~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g------ 89 (133)
T d1klxa_ 28 CLSLVS--NSQINKQKLFQYLSKACEL------N-S---GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------ 89 (133)
T ss_dssp HHHHHT--CTTSCHHHHHHHHHHHHHT------T-C---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------
T ss_pred hhhhcc--ccccCHHHHHHHHhhhhcc------c-c---hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC------
Confidence 344443 3456889999999998764 2 2 5678899999886 568999999999998652
Q ss_pred CChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEI 406 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~ 406 (546)
.+.+.++||.+|.. ..++.+|+.+|++|.+.
T Consensus 90 ----~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 90 ----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ----cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 35567889999987 56899999999999886
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.00072 Score=52.20 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 335 AATLNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
..+.++.|.++....+ .++|+.+++.++... +.....++++||..|++.|+|++|..++++++++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-------p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i----- 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-------chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-----
Confidence 5788899999887654 567888888877541 2345689999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHH
Q psy597 412 GPDDSNVAKTKNNLASC 428 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~ 428 (546)
.|....+....-.+
T Consensus 103 ---eP~n~qA~~L~~~I 116 (124)
T d2pqrb1 103 ---ERNNKQVGALKSMV 116 (124)
T ss_dssp ---CTTCHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHH
Confidence 77766655444333
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.0013 Score=50.73 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 377 AKQLNNLALLCQNQS---KYEEVERYYQRALEIYELKLGPDDS-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 377 ~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
..+.+++|+++.... +.++|+..++.++.. +| ....++++||..|.++|+|++|..+++.++++.|.+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 578889999988664 456788888888765 45 456899999999999999999999999999986654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=4.6 Score=37.88 Aligned_cols=197 Identities=9% Similarity=0.044 Sum_probs=116.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
...+..-....+.+.|...+....... .............++......+..+.|...+...... ....
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~------~~~~-- 285 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQST-- 285 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCH--
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhcc----cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc------ccch--
Confidence 344555555677888887776654432 1223333444445555555667778888777665443 2222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh-----
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE----- 451 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~----- 451 (546)
......++. ....+++..+...+...- ..........+.+|..+...|+.+.|..+|..+... +.
T Consensus 286 ~~~~w~~~~-al~~~~~~~~~~~~~~l~--------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~L 355 (450)
T d1qsaa1 286 SLIERRVRM-ALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMV 355 (450)
T ss_dssp HHHHHHHHH-HHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHH
T ss_pred HHHHHHHHH-HHHcCChHHHHHHHHhcC--------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHH
Confidence 222233333 445689988887775432 224455778899999999999999999999987641 11
Q ss_pred -------c-ccC----cccCC--------ChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 452 -------R-EFG----ACDGD--------NKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 452 -------~-~~~----~~~~~--------~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
. ... ..... ...+..+...|....|...+..++. ..+ ..-...+|.+...
T Consensus 356 Aa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~-------~~~---~~~~~~la~lA~~ 425 (450)
T d1qsaa1 356 AAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-------SKS---KTEQAQLARYAFN 425 (450)
T ss_dssp HHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCC---HHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh-------CCC---HHHHHHHHHHHHH
Confidence 0 000 00000 0111225556667666666554432 112 2345577899999
Q ss_pred cCCHHHHHHHHHHH
Q psy597 512 QGKYKEAEILYKQV 525 (546)
Q Consensus 512 ~g~~~~A~~~~~~a 525 (546)
.|.++.|+....++
T Consensus 426 ~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 426 NQWWDLSVQATIAG 439 (450)
T ss_dssp TTCHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHH
Confidence 99999999776654
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.27 E-value=2.8 Score=35.34 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL-KQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~-~~g~~~eA~~~~~~al~~~~ 450 (546)
.+.|...|++|+++..+.++|.+|.......|.+..|+ ..|+.++|..+.++++..+-
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai 200 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI 200 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35799999999999988888889988888888887765 47999999999999987543
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=91.95 E-value=2.9 Score=34.87 Aligned_cols=185 Identities=10% Similarity=0.060 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc-hhHHHhhHHHHHhhhhhhH-HHHHHHHHHHHhccCCCCChhHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK-YEAAETLEDCALRSRKESY-DIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
....+|.++...|+|++.+.+.++++++....... ..+-+.++..+....-... ..+..... +............
T Consensus 6 ~~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~eERnLLsvayKn~i~~~R~s~R~i~~---ie~k~~~~~~~~~ 82 (220)
T d2o8pa1 6 LQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQ---EQTKQLNNDELVK 82 (220)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHSCSCHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHhhccchhHHH
Confidence 45568899999999999999999999886532211 1222233333322111111 11111111 1111111222111
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhc
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-----KRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+..-|. ..=-.+=...+...+.+....+.++.......+-..|..|. ..|.-+.|...|++|..+.....
T Consensus 83 ----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l 157 (220)
T d2o8pa1 83 ----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP 157 (220)
T ss_dssp ----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred ----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcC
Confidence 111111 11223445566777777766654443323333334454443 46888999999999999998877
Q ss_pred CCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQN-QSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~~~ 409 (546)
++.+|.......|.+..++. .++.++|....+.|.+.+..
T Consensus 158 ~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fde 198 (220)
T d2o8pa1 158 DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL 198 (220)
T ss_dssp GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 77788877777788777665 89999999999888554443
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.91 E-value=3.2 Score=35.15 Aligned_cols=57 Identities=23% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|..+....+++.+|.......|.+..|+. .|+.++|..+.++++..+
T Consensus 147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a 204 (236)
T d1o9da_ 147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 467899999999999888888899988888888888775 599999999998888753
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.71 E-value=5 Score=33.70 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~~ 530 (546)
...|...|++|..+....+++.+|.......+.+..|+. .|+.++|....++|+...-
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai 200 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI 200 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 456888999999999888888899888888888887655 7999999999999987664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.47 E-value=17 Score=33.58 Aligned_cols=129 Identities=9% Similarity=0.090 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCC
Q psy597 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN 461 (546)
Q Consensus 382 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 461 (546)
..+..-....+.+.|...+...... ..............++..+...+..+.|..++........... ....
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~w 290 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS----LIER 290 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH----HHHH
T ss_pred HHHHHHHhccChhHHHHHHHhhhhc----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchH----HHHH
Confidence 3444444556788888777665443 1111223334444455555556777888877776654321111 0001
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 462 KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 462 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
...+ ....++...+...+. . +...........+.+|..+...|+.++|..+|..+..
T Consensus 291 ~~~~-al~~~~~~~~~~~~~-------~-l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 291 RVRM-ALGTGDRRGLNTWLA-------R-LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHH-HHHHTCHHHHHHHHH-------H-SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHH-HHHcCChHHHHHHHH-------h-cCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 1111 233344444433332 2 2233445577889999999999999999999998754
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=80.47 E-value=14 Score=30.49 Aligned_cols=60 Identities=13% Similarity=-0.020 Sum_probs=47.9
Q ss_pred hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 470 ~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+..+.|...|++|..+....+++.+|.......+.+..|+. .++.++|....+.|.+.+
T Consensus 136 ~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~f 196 (220)
T d2o8pa1 136 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 196 (220)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 455678889999999998877777788877777788877655 799999999988885544
|