Psyllid ID: psy5990

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSNVQIF
Secondary Structure (PSIPRED)
cccHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MNTVAGVIsllddpmiELKEFSLKKLNDIVDDFWPEVSEAIQKIEIlhedkgfpqyKLAALVASKVYFHLGSFSDSLQYAlgagdlfdvrndtVYVKTIICKYFCISLSTyrysnvqif
Flexible Loop (DISEMBL)
mntvagvisllddpmIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCislstyrysnvqif
Low Complexity Region (SEG)
MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSNVQIF
Disordered region (IsUnstruct)
****AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSNV***
Disordered Region (DISOPRED)
*NTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTYR*******
Disordered Region (DISEMBL)
MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSNVQIF
Disordered Region (DISPRO)
*NTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSNVQIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9V3P6	1020	26S proteasome non-ATPase	yes	N/A	0.873	0.101	0.641	6e-36
O88761	953	26S proteasome non-ATPase	yes	N/A	0.873	0.109	0.584	9e-31
Q3TXS7	953	26S proteasome non-ATPase	yes	N/A	0.873	0.109	0.584	9e-31
Q5F418	955	26S proteasome non-ATPase	yes	N/A	0.873	0.108	0.584	1e-30
Q5R5S4	953	26S proteasome non-ATPase	yes	N/A	0.873	0.109	0.584	1e-30
Q99460	953	26S proteasome non-ATPase	yes	N/A	0.873	0.109	0.584	1e-30
Q54JM5	975	26S proteasome non-ATPase	yes	N/A	0.865	0.105	0.461	6e-21
Q6FIP2	941	26S proteasome regulatory	yes	N/A	0.991	0.125	0.393	4e-20
O74762	965	26S proteasome regulatory	yes	N/A	0.890	0.109	0.388	3e-17
Q75CF3	930	26S proteasome regulatory	yes	N/A	0.941	0.120	0.394	4e-17

>sp|Q9V3P6|PSMD1_DROME 26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 88/106 (83%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLLD+PM +LK F+LKKL++IVD+FWPE+SE+I+KIE+LHED+ FP+ KLA 
Sbjct: 3   LTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENKLAG 62

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           +VASKV++HLGSF D+L YALGAGDLFDV     Y +TII K  CI
Sbjct: 63  MVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAK--CI 106

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
Drosophila melanogaster (taxid: 7227)

>sp|O88761|PSMD1_RAT 26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1

 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct: 2   ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q3TXS7|PSMD1_MOUSE 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1

 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct: 2   ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Mus musculus (taxid: 10090)

>sp|Q5F418|PSMD1_CHICK 26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct: 2   ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Gallus gallus (taxid: 9031)

>sp|Q5R5S4|PSMD1_PONAB 26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Pongo abelii (taxid: 9601)

>sp|Q99460|PSMD1_HUMAN 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 86/106 (81%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

>sp|Q54JM5|PSMD1_DICDI 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEV-SEAIQKIEILHEDKGFPQYKLA 59
           +N+V+  +SLLD+  +ELK +SL+KL+  VD+FW E+ S +I KI+ L  +K FP+++LA
Sbjct: 4   INSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIKSLSVNKQFPKHELA 63

Query: 60  ALVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKY 103
           +LV SKVY++L  F +S++YAL AG LF+V + + Y++T++ K+
Sbjct: 64  SLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKF 107

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6FIP2|RPN2_CANGA 26S proteasome regulatory subunit RPN2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPN2 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 4/122 (3%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + T A +++LL +   E+K ++L+ +N+ VD FW EVS  + +IE L++D GF   K+AA
Sbjct: 3   LTTAAPLLALLKEKDAEVKAYALQSINEGVDQFWSEVSNDLPEIEALYDDNGFQDRKMAA 62

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK----YFCISLSTYRYSNV 116
           L+ASKVY++LG +  +++YAL A + FD+   T YV+TI+ K    Y  ++   Y  S  
Sbjct: 63  LIASKVYYNLGEYESAVKYALAAEEKFDIDEKTQYVETIVSKSIEMYIKLATEIYNKSGE 122

Query: 117 QI 118
           Q+
Sbjct: 123 QV 124

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|O74762|RPN2_SCHPO 26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn2 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 73/108 (67%), Gaps = 2/108 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + +  G+++LLD+   EL+  +L K+ + +D  WPE+S+ + KIE+++ED  FP+ +LAA
Sbjct: 12  ITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPERELAA 71

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISL 108
           LV SKVY++LG + ++L +AL +G  F    ++ Y +T+I K  CI +
Sbjct: 72  LVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFK--CIDM 117

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPN2 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 2/114 (1%)

Query: 3   TVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALV 62
           T A +++LL +    +K ++L  +N++VD  W EVS  I  IE L+ED  F   KLAALV
Sbjct: 5   TAAPLLALLREDDHTVKSYALHSINEVVDQLWSEVSNDITDIEALYEDSKFEDRKLAALV 64

Query: 63  ASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKY--FCISLSTYRYS 114
            SK+Y++LG +  +++YAL A + FD+   + YV+TI+ +     I L+T  Y 
Sbjct: 65  VSKIYYNLGEYESAVRYALAAEEYFDINEKSRYVETIVSQSIEMYIKLATENYG 118

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
383862447	643	PREDICTED: 26S proteasome non-ATPase reg	0.907	0.167	0.681	4e-36
350408109	1014	PREDICTED: 26S proteasome non-ATPase reg	0.907	0.106	0.681	5e-36
340719996	1011	PREDICTED: 26S proteasome non-ATPase reg	0.907	0.106	0.681	5e-36
170040984	1029	26S proteasome non-ATPase regulatory sub	0.873	0.101	0.698	6e-36
380029242	1000	PREDICTED: 26S proteasome non-ATPase reg	0.907	0.108	0.681	6e-36
380029238	1015	PREDICTED: 26S proteasome non-ATPase reg	0.907	0.106	0.681	6e-36
312375012	1051	hypothetical protein AND_15223 [Anophele	0.873	0.098	0.688	1e-35
157132856	1016	26S proteasome regulatory subunit rpn2 [	0.915	0.107	0.666	1e-35
307171822	640	26S proteasome non-ATPase regulatory sub	0.907	0.168	0.681	1e-35
195061865	1038	GH14298 [Drosophila grimshawi] gi|193891	0.873	0.100	0.660	1e-35

>gi|383862447|ref|XP_003706695.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like isoform 1 [Megachile rotundata]

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 88/110 (80%), Gaps = 2/110 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLL++PM ELK F+LKKL+ IVD+FWPE+SEAI+KIEILHEDK FPQ+ LAA
Sbjct: 3   ITSAAGIISLLEEPMPELKVFALKKLDMIVDEFWPEISEAIEKIEILHEDKSFPQHDLAA 62

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLST 110
           LVASKVY+HLGSF DSL YALGAG+LFDV     YV T I K  CI   T
Sbjct: 63  LVASKVYYHLGSFEDSLTYALGAGELFDVNARNEYVDTTIAK--CIDFYT 110

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408109|ref|XP_003488307.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like isoform 1 [Bombus impatiens]

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 88/110 (80%), Gaps = 2/110 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLL++PM ELK F+LKKL+ IVD+FWPE+SEAI+KIEILHEDK FPQ+ LAA
Sbjct: 3   ITSAAGIISLLEEPMPELKVFALKKLDMIVDEFWPEISEAIEKIEILHEDKAFPQHDLAA 62

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLST 110
           LVASKVY+HLGSF DSL YALGAG+LFDV     YV T I K  CI   T
Sbjct: 63  LVASKVYYHLGSFEDSLTYALGAGELFDVNARNEYVDTTIAK--CIDYYT 110

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719996|ref|XP_003398430.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like [Bombus terrestris]

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 88/110 (80%), Gaps = 2/110 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLL++PM ELK F+LKKL+ IVD+FWPE+SEAI+KIEILHEDK FPQ+ LAA
Sbjct: 3   ITSAAGIISLLEEPMPELKVFALKKLDMIVDEFWPEISEAIEKIEILHEDKAFPQHDLAA 62

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLST 110
           LVASKVY+HLGSF DSL YALGAG+LFDV     YV T I K  CI   T
Sbjct: 63  LVASKVYYHLGSFEDSLTYALGAGELFDVNARNEYVDTTIAK--CIDYYT 110

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040984|ref|XP_001848260.1| 26S proteasome non-ATPase regulatory subunit 1 [Culex quinquefasciatus] gi|167864560|gb|EDS27943.1| 26S proteasome non-ATPase regulatory subunit 1 [Culex quinquefasciatus]

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/106 (69%), Positives = 87/106 (82%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+I LLD+P+ ELK F+LKKL+ IVD+FWPE+SEA++KIEILHEDKGF Q+ LAA
Sbjct: 5   ITSAAGIICLLDEPIQELKVFALKKLDTIVDEFWPEISEAVEKIEILHEDKGFQQHDLAA 64

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           LVASKVY+HLGSF DSL YALGAGDLFDV     YV TII K  CI
Sbjct: 65  LVASKVYYHLGSFEDSLTYALGAGDLFDVNARNEYVDTIIAK--CI 108

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029242|ref|XP_003698288.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like isoform 3 [Apis florea]

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 88/110 (80%), Gaps = 2/110 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLL++PM ELK F+LKKL+ IVD+FWPE+SEAI+KIEILHEDK FPQ+ LAA
Sbjct: 7   ITSAAGIISLLEEPMPELKVFALKKLDMIVDEFWPEISEAIEKIEILHEDKSFPQHDLAA 66

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLST 110
           LVASKVY+HLGSF DSL YALGAG+LFDV     YV T I K  CI   T
Sbjct: 67  LVASKVYYHLGSFEDSLTYALGAGELFDVNARNEYVDTTIAK--CIDYYT 114

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029238|ref|XP_003698286.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like isoform 1 [Apis florea]

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 88/110 (80%), Gaps = 2/110 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLL++PM ELK F+LKKL+ IVD+FWPE+SEAI+KIEILHEDK FPQ+ LAA
Sbjct: 7   ITSAAGIISLLEEPMPELKVFALKKLDMIVDEFWPEISEAIEKIEILHEDKSFPQHDLAA 66

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLST 110
           LVASKVY+HLGSF DSL YALGAG+LFDV     YV T I K  CI   T
Sbjct: 67  LVASKVYYHLGSFEDSLTYALGAGELFDVNARNEYVDTTIAK--CIDYYT 114

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375012|gb|EFR22463.1| hypothetical protein AND_15223 [Anopheles darlingi]

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/106 (68%), Positives = 87/106 (82%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+I LLD+P++ELK F+L KLN IVD+FWPE+SEA +KIE+LHEDKGF  ++LAA
Sbjct: 4   ITSAAGIICLLDEPVVELKVFALSKLNMIVDEFWPEISEAAEKIEMLHEDKGFSHHELAA 63

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           LVASKVY+HLGSF DSL YALGAGDLFDV   T YV TII K  CI
Sbjct: 64  LVASKVYYHLGSFEDSLTYALGAGDLFDVNARTEYVDTIIAK--CI 107

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132856|ref|XP_001662672.1| 26S proteasome regulatory subunit rpn2 [Aedes aegypti] gi|108881635|gb|EAT45860.1| AAEL002906-PA [Aedes aegypti]

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 89/111 (80%), Gaps = 2/111 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+I LLD+P+ ELK F+L+KL+ IVD+FWPE+SEA++KIEILHEDKGF Q+ LAA
Sbjct: 5   ITSAAGIICLLDEPIQELKVFALQKLDTIVDEFWPEISEAVEKIEILHEDKGFVQHDLAA 64

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLSTY 111
           LVASKVY+HLGSF DSL YALGAGDLFDV     YV TII K  CI   T+
Sbjct: 65  LVASKVYYHLGSFEDSLTYALGAGDLFDVNARNEYVDTIIAK--CIDHYTH 113

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171822|gb|EFN63481.1| 26S proteasome non-ATPase regulatory subunit 1 [Camponotus floridanus]

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/110 (68%), Positives = 88/110 (80%), Gaps = 2/110 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLL++PM ELK F+LKKLN IVD+FWPE+SEAI+KIEILHEDK F Q++LAA
Sbjct: 56  ITSAAGIISLLEEPMPELKVFALKKLNMIVDEFWPEISEAIEKIEILHEDKSFQQHELAA 115

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCISLST 110
           LVASKVY+HLGSF DSL YALGAG+LFDV     YV T I K  CI   T
Sbjct: 116 LVASKVYYHLGSFEDSLTYALGAGELFDVNARNEYVDTTIAK--CIDYYT 163

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195061865|ref|XP_001996086.1| GH14298 [Drosophila grimshawi] gi|193891878|gb|EDV90744.1| GH14298 [Drosophila grimshawi]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 89/106 (83%), Gaps = 2/106 (1%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + + AG+ISLLD+PM ELK F+LKKL++IVD+FWPE+SE+I+KIE+LHED+GFP+ KLA 
Sbjct: 3   LTSAAGIISLLDEPMPELKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRGFPENKLAG 62

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
           +VASKV++HLGSF D+L YALGAGDLFDV     Y +TII K  CI
Sbjct: 63  MVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAK--CI 106

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0028692	1020	Rpn2 "Regulatory particle non-	0.873	0.101	0.641	6.5e-32
UNIPROTKB|J9P4R4	701	PSMD1 "Uncharacterized protein	0.873	0.148	0.584	1.6e-28
UNIPROTKB|F1PX57	953	PSMD1 "Uncharacterized protein	0.848	0.105	0.601	2.5e-28
UNIPROTKB|A7MBA2	953	PSMD1 "Uncharacterized protein	0.873	0.109	0.584	3.2e-28
UNIPROTKB|Q99460	953	PSMD1 "26S proteasome non-ATPa	0.873	0.109	0.584	3.2e-28
UNIPROTKB|Q5R5S4	953	PSMD1 "26S proteasome non-ATPa	0.873	0.109	0.584	3.2e-28
MGI|MGI:1917497	953	Psmd1 "proteasome (prosome, ma	0.873	0.109	0.584	3.2e-28
RGD|621669	953	Psmd1 "proteasome (prosome, ma	0.873	0.109	0.584	3.2e-28
UNIPROTKB|G3V8B6	953	Psmd1 "26S proteasome non-ATPa	0.873	0.109	0.584	3.2e-28
UNIPROTKB|F1NUT6	955	PSMD1 "26S proteasome non-ATPa	0.873	0.108	0.584	3.2e-28

FB|FBgn0028692 Rpn2 "Regulatory particle non-ATPase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 361 (132.1 bits), Expect = 6.5e-32, P = 6.5e-32
 Identities = 68/106 (64%), Positives = 88/106 (83%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+PM +LK F+LKKL++IVD+FWPE+SE+I+KIE+LHED+ FP+ KLA 
Sbjct:     3 LTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENKLAG 62

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             +VASKV++HLGSF D+L YALGAGDLFDV     Y +TII K  CI
Sbjct:    63 MVASKVFYHLGSFEDALTYALGAGDLFDVNARNEYTETIIAK--CI 106

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=ISS;IDA

GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|J9P4R4 PSMD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 326 (119.8 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|F1PX57 PSMD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 327 (120.2 bits), Expect = 2.5e-28, P = 2.5e-28
 Identities = 62/103 (60%), Positives = 85/103 (82%)

Query:     4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVA 63
             +AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AALVA
Sbjct:     5 IAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVA 64

Query:    64 SKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             SKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    65 SKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|A7MBA2 PSMD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|Q99460 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

UNIPROTKB|Q5R5S4 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Pongo abelii (taxid:9601)]

 Score = 326 (119.8 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0022624 "proteasome accessory complex" evidence=ISS

MGI|MGI:1917497 Psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0000502 "proteasome complex" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

RGD|621669 Psmd1 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 1" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0022624 "proteasome accessory complex" evidence=ISO;ISS

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

UNIPROTKB|G3V8B6 Psmd1 "26S proteasome non-ATPase regulatory subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0000502 "proteasome complex" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

UNIPROTKB|F1NUT6 PSMD1 "26S proteasome non-ATPase regulatory subunit 1" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 3.2e-28, P = 3.2e-28
 Identities = 62/106 (58%), Positives = 86/106 (81%)

Query:     1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
             + + AG+ISLLD+   +LKEF+L KLN +V+DFW E+SE++ KIE+L+ED+GF   + AA
Sbjct:     2 ITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query:    61 LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICKYFCI 106
             LVASKV++HLG+F +SL YALGAGDLF+V +++ YV+TII K  CI
Sbjct:    62 LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAK--CI 105

GO:0000502 "proteasome complex" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

GO:0042176 "regulation of protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V3P6	PSMD1_DROME	No assigned EC number	0.6415	0.8739	0.1019	yes	N/A
Q5F418	PSMD1_CHICK	No assigned EC number	0.5849	0.8739	0.1089	yes	N/A
O88761	PSMD1_RAT	No assigned EC number	0.5849	0.8739	0.1091	yes	N/A
Q99460	PSMD1_HUMAN	No assigned EC number	0.5849	0.8739	0.1091	yes	N/A
Q3TXS7	PSMD1_MOUSE	No assigned EC number	0.5849	0.8739	0.1091	yes	N/A
Q5R5S4	PSMD1_PONAB	No assigned EC number	0.5849	0.8739	0.1091	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	2e-23

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 93.5 bits (232), Expect = 2e-23
 Identities = 38/102 (37%), Positives = 61/102 (59%)

Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           M T   + +LL +     +  +L  +N  VD  WPE+S+ ++ IE L++D  F   ++AA
Sbjct: 3   MTTARILPALLAELRDGRESEALDVINAHVDQLWPEISDDLRYIEALYDDDSFDPREMAA 62

Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102
           L  SKVY+ LG +  +++YAL AGD F V + + Y +TI+ K
Sbjct: 63  LCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYK 104

Length = 926

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG2062|consensus	929		100.0
COG5116	926	RPN2 26S proteasome regulatory complex component [	100.0
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	85.78
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	81.95

>KOG2062|consensus

Probab=100.00  E-value=6.6e-44  Score=321.51  Aligned_cols=113  Identities=50%  Similarity=0.849  Sum_probs=111.1

Q ss_pred             CCcHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990           1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYA   80 (119)
Q Consensus         1 ~tSaag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yA   80 (119)
                      +|||+|+++||+||.|+||+|||.++|++||+|||||||++++||.||||++||+|++|||++||||||||+|++||+||
T Consensus         3 itsAa~lialL~e~~~~lk~~Al~~in~vVd~~WpEIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yA   82 (929)
T KOG2062|consen    3 ITSAAGLIALLREPEPSLKVHALFKINNVVDQFWPEISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYA   82 (929)
T ss_pred             ccchHHHHHHHhCCchHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCChhHHHhhhhhhhhHHHHHhhhc
Q psy5990          81 LGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSN  115 (119)
Q Consensus        81 L~AG~lFdv~~~seYvetiisk~~cID~Yi~~~~~  115 (119)
                      |+||+.|||+++|+|++|||+|  |||+||+.++.
T Consensus        83 L~ag~~F~Vd~~S~y~etivak--~id~yi~~~~~  115 (929)
T KOG2062|consen   83 LRAGDDFDVDENSDYVETIVAK--CIDMYIETASE  115 (929)
T ss_pred             HcCCccccccCccchhhHHHHH--HHHHHHHHHHH
Confidence            9999999999999999999999  99999998764

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-35  Score=262.88  Aligned_cols=113  Identities=35%  Similarity=0.551  Sum_probs=110.3

Q ss_pred             CCcHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990           1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYA   80 (119)
Q Consensus         1 ~tSaag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yA   80 (119)
                      +|||+|+++||.|....++++||..+|..|||.||||||.+++||.||+|.+||.|++|||++|||||+||||++|+.||
T Consensus         3 ~tta~~L~all~e~~d~~~~~Al~~In~~vDqlwpeIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yA   82 (926)
T COG5116           3 MTTARILPALLAELRDGRESEALDVINAHVDQLWPEISDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYA   82 (926)
T ss_pred             cchhhhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCChhHHHhhhhhhhhHHHHHhhhc
Q psy5990          81 LGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYSN  115 (119)
Q Consensus        81 L~AG~lFdv~~~seYvetiisk~~cID~Yi~~~~~  115 (119)
                      |.||+.|+++++|.|++|||.|  |||+|++..+.
T Consensus        83 L~agdrfl~D~~S~y~etiv~k--~iem~vh~~~~  115 (926)
T COG5116          83 LRAGDRFLVDDGSFYYETIVYK--SIEMYVHMMDS  115 (926)
T ss_pred             HhcCCceeecCCccceehhHHh--HHHHHHHHHHH
Confidence            9999999999999999999999  99999987553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=85.78  E-value=1.1  Score=28.89  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=24.0

Q ss_pred             HhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHH
Q psy5990          38 SEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYAL   81 (119)
Q Consensus        38 sd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL   81 (119)
                      .++|...|.+++...........+-...+||++|+|++|+.+.-
T Consensus         6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~   49 (84)
T PF12895_consen    6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQ   49 (84)
T ss_dssp             HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34555555665544332233333335677777777777776653

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=81.95  E-value=2.7  Score=26.61  Aligned_cols=54  Identities=22%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             HHHHhc-CCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHH
Q psy5990           6 GVISLL-DDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASK   65 (119)
Q Consensus         6 g~laLL-~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSK   65 (119)
                      .++..| +++++.+|..|++-|-.+    +.+  +.++.+..+.+|++..-|.-|+.-..+
T Consensus         3 ~L~~~l~~~~~~~vr~~a~~~L~~~----~~~--~~~~~L~~~l~d~~~~vr~~a~~aL~~   57 (88)
T PF13646_consen    3 ALLQLLQNDPDPQVRAEAARALGEL----GDP--EAIPALIELLKDEDPMVRRAAARALGR   57 (88)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHCC----THH--HHHHHHHHHHTSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHc----CCH--hHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            467777 999999999999998843    433  778888888888777667766655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
4b4t_N	945	Near-Atomic Resolution Structural Model Of The Yeas		8e-18
4ady_A	963	Crystal Structure Of 26s Proteasome Subunit Rpn2 Le		2e-17

>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 945

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 68/102 (66%)
Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + T A +++LL +    +K ++L+ +N++VD  W E+S  +  IE L++D  F   ++AA
Sbjct: 3   LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAA 62
Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102
           L+ASKVY++LG +  +++YAL A D FD+   + +V+TI+ K
Sbjct: 63  LIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSK 104

>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2 Length = 963

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 67/102 (65%)
Query: 1   MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAA 60
           + T A +++LL +    +K ++L+ +N++VD  W E+S  +  IE L++D  F   + AA
Sbjct: 14  LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREXAA 73
Query: 61  LVASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102
           L+ASKVY++LG +  +++YAL A D FD+   + +V+TI+ K
Sbjct: 74  LIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSK 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-35

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score =  126 bits (317), Expect = 3e-35
 Identities = 38/100 (38%), Positives = 67/100 (67%)

Query: 3   TVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALV 62
           T A +++LL +    +K ++L+ +N++VD  W E+S  +  IE L++D  F   ++AAL+
Sbjct: 16  TAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAALI 75

Query: 63  ASKVYFHLGSFSDSLQYALGAGDLFDVRNDTVYVKTIICK 102
           ASKVY++LG +  +++YAL A D FD+   + +V+TI+ K
Sbjct: 76  ASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSK 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	84.37
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.68
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	81.39
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	81.09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	81.07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	81.03

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=100.00  E-value=9e-47  Score=344.38  Aligned_cols=112  Identities=36%  Similarity=0.682  Sum_probs=109.8

Q ss_pred             CCcHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990           1 MNTVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYA   80 (119)
Q Consensus         1 ~tSaag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yA   80 (119)
                      +|+|+|+|+||+|+|++||.|||++||++||+||+|||++|++||.||||++||+|+||||||||||||||+|++||+||
T Consensus        14 ~~~a~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~eia~~i~~ie~l~ed~~f~~r~laalvaSkvyy~Lg~~~~al~ya   93 (963)
T 4ady_A           14 LTTAAPLLALLRENQDSVKTYALESINNVVDQLWSEISNELPDIEALYDDDTFSDREMAALIASKVYYNLGEYESAVKYA   93 (963)
T ss_dssp             -CCSHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHcCCCcchHHHHHHHHHHHheeccchHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCChhHHHhhhhhhhhHHHHHhhh
Q psy5990          81 LGAGDLFDVRNDTVYVKTIICKYFCISLSTYRYS  114 (119)
Q Consensus        81 L~AG~lFdv~~~seYvetiisk~~cID~Yi~~~~  114 (119)
                      |+||++||++++||||+|||+|  |||+||+.|.
T Consensus        94 L~aG~~fd~~~~seYv~tiis~--cid~y~~~~~  125 (963)
T 4ady_A           94 LAAKDRFDIDEKSQFVETIVSK--SIEMYVQEAS  125 (963)
T ss_dssp             HHHGGGSCTTSCSHHHHHHHHH--HHHHHHHHHH
T ss_pred             HhCCCcCCCCCcchHHHHHHHH--HHHHHHHHHh
Confidence            9999999999999999999999  9999999885

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=84.37  E-value=3.2  Score=27.32  Aligned_cols=83  Identities=12%  Similarity=0.089  Sum_probs=56.9

Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990           4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA   83 (119)
Q Consensus         4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A   83 (119)
                      ...++.+|+++++.+|..|+..|-.+-+      .+.++.+..+.+|++-.-|.-|+....++    |+ .+++..-+..
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~~-~~a~~~L~~~  112 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG-ERVRAAMEKL  112 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc-HHHHHHHHHH
Confidence            4568899999999999999999987765      35677787888888887888887776654    43 3333332222


Q ss_pred             CCCCCCCCCChhHHHhhhh
Q psy5990          84 GDLFDVRNDTVYVKTIICK  102 (119)
Q Consensus        84 G~lFdv~~~seYvetiisk  102 (119)
                      =     ..++..|......
T Consensus       113 l-----~d~~~~vr~~A~~  126 (131)
T 1te4_A          113 A-----ETGTGFARKVAVN  126 (131)
T ss_dssp             T-----TSCCTHHHHHHHH
T ss_pred             H-----hCCCHHHHHHHHH
Confidence            1     1345566665555

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.68  E-value=2.2  Score=31.56  Aligned_cols=44  Identities=9%  Similarity=0.161  Sum_probs=36.8

Q ss_pred             HHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHH
Q psy5990          36 EVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYA   80 (119)
Q Consensus        36 EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yA   80 (119)
                      +|-..|..+|.|+.+..-..|+.--.+| --||.||+|++|++|.
T Consensus        57 di~~GI~LLe~l~~~~~~~~RdcLYyLA-vg~ykl~~Y~~Ar~y~  100 (144)
T 1y8m_A           57 DERLGVKILTDIYKEAESRRRECLYYLT-IGCYKLGEYSMAKRYV  100 (144)
T ss_dssp             HHHHHHHHHHHHHHHCCSTHHHHHHHHH-HHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccchhHHHHHHH-HHHHHhhhHHHHHHHH
Confidence            4667888999999987777888776665 4699999999999986

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=81.39  E-value=7.8  Score=28.76  Aligned_cols=61  Identities=8%  Similarity=0.062  Sum_probs=41.1

Q ss_pred             HHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990          21 FSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALG   82 (119)
Q Consensus        21 ~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~   82 (119)
                      .|+..|-...... .+....+..++.+.++...|+...+-.....+|.+.|++++|++.--.
T Consensus        66 ~a~~~la~~~~~~-~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~  126 (291)
T 3mkr_A           66 QAVRMFAEYLASH-SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ  126 (291)
T ss_dssp             HHHHHHHHHHHCS-TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCC-CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence            3444444333321 345667777888877766777777777778888888888888876554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=81.09  E-value=3.9  Score=28.30  Aligned_cols=56  Identities=20%  Similarity=0.098  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHH
Q psy5990           4 VAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASK   65 (119)
Q Consensus         4 aag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSK   65 (119)
                      ...++.+|.++++.+|..|++.|-.+-+      .+.++.+..+..|+.-.-|..|+...++
T Consensus        21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~   76 (211)
T 3ltm_A           21 VEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQ   76 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence            4456777777777777777777766544      2455555556666554455555544444

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=81.07  E-value=3.6  Score=28.30  Aligned_cols=54  Identities=19%  Similarity=0.071  Sum_probs=29.8

Q ss_pred             HHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHH
Q psy5990           5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVAS   64 (119)
Q Consensus         5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaS   64 (119)
                      ..++.+|+.+++.+|..|++.|-.+-+      .+.++.+..+.+|+.-.-|..|+....
T Consensus        17 ~~~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~   70 (201)
T 3ltj_A           17 EMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALG   70 (201)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            446667777777777777666665443      134444445555554444555444433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=81.03  E-value=3.9  Score=28.33  Aligned_cols=56  Identities=18%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             HHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHH
Q psy5990           5 AGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKV   66 (119)
Q Consensus         5 ag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKV   66 (119)
                      ..++.+|.++++.++..|+..|-.+-+      .+.++.+..+.+|++..-|..|+....++
T Consensus        84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           84 EPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKALKDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            446666777777777777777665543      24556666666676666666666555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	87.43
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	85.05
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	83.55
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	80.66

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=87.43  E-value=1.4  Score=29.06  Aligned_cols=58  Identities=17%  Similarity=0.168  Sum_probs=47.2

Q ss_pred             cHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHH
Q psy5990           3 TVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKV   66 (119)
Q Consensus         3 Saag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKV   66 (119)
                      +...++.+|+.++|.+|.-|++.|..+=+      .+.++.+..+.+|++..-|..|+....+.
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l   77 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQI   77 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            45678999999999999999999876643      35678888889999988888887766654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.05  E-value=2.6  Score=25.36  Aligned_cols=89  Identities=11%  Similarity=0.088  Sum_probs=59.2

Q ss_pred             cHHHHHHhcCCCchHHHHHHHHHHhhhhhcchHHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHh
Q psy5990           3 TVAGVISLLDDPMIELKEFSLKKLNDIVDDFWPEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALG   82 (119)
Q Consensus         3 Saag~laLL~E~d~~Lk~~AL~~L~~vVd~~W~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~   82 (119)
                      +...++.+|+.+++.+|..|+..|-.+-+      ...++.+..+.+|++-.-|.-|+.-..++    |+ ++++..-..
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----~~-~~~~~~L~~   91 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG-ERVRAAMEK   91 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcch------hhhHHHHHhhhccchhHHHHHHHHHHHHh----Cc-cchHHHHHH
Confidence            34678899999999999999999865543      24678888888888877777776666654    43 233332221


Q ss_pred             CCCCCCCCCCChhHHHhhhhhhhhHHH
Q psy5990          83 AGDLFDVRNDTVYVKTIICKYFCISLS  109 (119)
Q Consensus        83 AG~lFdv~~~seYvetiisk~~cID~Y  109 (119)
                      .     .+.++.+|..-..+  ++++|
T Consensus        92 l-----l~d~~~~vr~~A~~--aL~th  111 (111)
T d1te4a_          92 L-----AETGTGFARKVAVN--YLETH  111 (111)
T ss_dssp             H-----TTSCCTHHHHHHHH--HGGGC
T ss_pred             H-----HcCCCHHHHHHHHH--HHHcc
Confidence            1     23446777766666  66653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.55  E-value=0.67  Score=29.72  Aligned_cols=49  Identities=14%  Similarity=0.217  Sum_probs=35.5

Q ss_pred             HHHHhhHHHHHHHhhCCCCCchhHHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990          35 PEVSEAIQKIEILHEDKGFPQYKLAALVASKVYFHLGSFSDSLQYALGA   83 (119)
Q Consensus        35 ~EIsd~i~~IE~LyED~~F~~R~lAALvaSKVyyhLgey~~aL~yAL~A   83 (119)
                      .++..+|...+.+.+...-|.+--|-.-..-+|+.+|+|++|+++--.+
T Consensus        50 ~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          50 DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4456688888888876655555434445679999999999999885544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.66  E-value=1.2  Score=30.18  Aligned_cols=46  Identities=9%  Similarity=0.126  Sum_probs=32.8

Q ss_pred             HHHhhHHHHHHHhhCCCCCchh-HHHHHHHHHhhhccChHHHHHHHHhC
Q psy5990          36 EVSEAIQKIEILHEDKGFPQYK-LAALVASKVYFHLGSFSDSLQYALGA   83 (119)
Q Consensus        36 EIsd~i~~IE~LyED~~F~~R~-lAALvaSKVyyhLgey~~aL~yAL~A   83 (119)
                      ++-..|..+|.++.+.  |.|. =+-...+-.||.||+|++|++|.-.+
T Consensus        53 d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          53 DERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             HHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4557888888888653  5443 23335567799999999999997554