Psyllid ID: psy599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MEDLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccHHHHHHHHHHHccccHHHHcccccccccHHHHHHHcccHHHHHHHHHcccHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MEDLTLDEYTHYQAFLEARTHEEIQMVTkfkfggatpliMACRNGHKEIVEYLVKECKADveetgavmfdhetvegapplwcaaaaghLPIVQFLVEhgakvnsktrtnstplraacfdGHFGVVKYLVEHgadfevsnrhghtcLMIACYKGHYRIVKYLLSLNadmnrksskgntalhdcaeAGSIEILKLLLSHgarmdvdsygmTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS
Flexible Loop (DISEMBL)
MEDLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVnsktrtnstplrAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIglnivsrkEKIDALELLGAS
Low Complexity Region (SEG)
MEDLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS
Disordered region (IsUnstruct)
*****LDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD*********TALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDAL******
Disordered Region (DISOPRED)
MEDLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS
Disordered Region (DISEMBL)
MEDLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS
Disordered Region (DISPRO)
MEDLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNI****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9VFD5	664	Protein fem-1 homolog CG6	yes	N/A	0.894	0.332	0.689	4e-94
Q2T9K6	617	Protein fem-1 homolog C O	N/A	N/A	0.910	0.364	0.609	8e-83
Q96JP0	617	Protein fem-1 homolog C O	yes	N/A	0.943	0.377	0.613	9e-83
A7MB89	617	Protein fem-1 homolog C O	yes	N/A	0.943	0.377	0.613	9e-83
Q8CEF1	617	Protein fem-1 homolog C O	yes	N/A	0.943	0.377	0.609	5e-82
Q6P9Z4	617	Protein fem-1 homolog A O	yes	N/A	0.898	0.359	0.604	9e-81
Q7T3P8	618	Protein fem-1 homolog C O	no	N/A	0.919	0.367	0.606	2e-78
Q4V890	654	Protein fem-1 homolog A O	no	N/A	0.846	0.319	0.657	6e-77
Q9BSK4	669	Protein fem-1 homolog A O	no	N/A	0.846	0.312	0.657	6e-77
Q29RM5	653	Protein fem-1 homolog A O	no	N/A	0.846	0.320	0.647	6e-76

>sp|Q9VFD5|FEM1A_DROME Protein fem-1 homolog CG6966 OS=Drosophila melanogaster GN=CG6966 PE=2 SV=2

 Score =  344 bits (882), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 162/235 (68%), Positives = 194/235 (82%)

Query: 13  QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
           +A L  ++  E+  +   K  GATPL+++CRNGH +IVEYL+ +C+A+VE+ G+V FD E
Sbjct: 20  KATLYNKSSVEVGSLISAKVNGATPLVISCRNGHYDIVEYLLTKCRANVEQVGSVSFDGE 79

Query: 73  TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
            +E APPLWCAAAAGHL IV+ LV  GA VNS TRTNSTPLRAACFDGH+ +VKYLV HG
Sbjct: 80  PIEDAPPLWCAAAAGHLGIVKMLVRRGANVNSTTRTNSTPLRAACFDGHYEIVKYLVHHG 139

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           ADFEV+NRHGHTCLMIACYKGH+RI +YLLSLNAD+NR S KGNTALHDCAE+GS++IL+
Sbjct: 140 ADFEVANRHGHTCLMIACYKGHFRIAQYLLSLNADVNRCSVKGNTALHDCAESGSLQILQ 199

Query: 193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           LLL HGA MDVD YGMTPLLAA+V GH  IVE+LI L  VSR+ +I ALELLGA+
Sbjct: 200 LLLKHGATMDVDYYGMTPLLAASVTGHMPIVEHLITLPCVSRESRIHALELLGAT 254

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.
Drosophila melanogaster (taxid: 7227)

>sp|Q2T9K6|FEM1C_XENLA Protein fem-1 homolog C OS=Xenopus laevis GN=fem1c PE=2 SV=1

 Score =  306 bits (784), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 142/233 (60%), Positives = 183/233 (78%)

Query: 15  FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
            LE +  +++ ++   K  GATPL+MA R GH ++V+YL+ +C A VE  G+V FD ET+
Sbjct: 22  LLENKAKDDVVLLMSEKTNGATPLLMAARYGHLDMVDYLLDQCSASVEIGGSVNFDGETI 81

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGAPPLW A+AAGHL +V+ L+ HGA VN+ T TNSTPLRAACFDGH  +VKYLVEH AD
Sbjct: 82  EGAPPLWAASAAGHLKVVRSLLVHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKAD 141

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            EV+NRHGHTCLMI+CYKGH  I ++LL   AD+NRKS KGNTALHDCAE+GS+EI+++L
Sbjct: 142 LEVANRHGHTCLMISCYKGHKEIAQFLLEKGADVNRKSVKGNTALHDCAESGSLEIMQML 201

Query: 195 LSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           L +GARM+ D YGMTPLL+A+V GH +IV++L      S+ E+I+ALELLGA+
Sbjct: 202 LKYGARMEKDGYGMTPLLSASVTGHTNIVDFLTQNPQTSKNERINALELLGAT 254

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Xenopus laevis (taxid: 8355)

>sp|Q96JP0|FEM1C_HUMAN Protein fem-1 homolog C OS=Homo sapiens GN=FEM1C PE=2 SV=1

 Score =  306 bits (784), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 143/233 (61%), Positives = 183/233 (78%)

Query: 15  FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
            L +++ EE+  +   K  GATPL+MA R GH ++VE+L+++C A +E  G+V FD ET+
Sbjct: 22  LLASKSKEEVSSLISEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETI 81

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGAPPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +VKYLVEH AD
Sbjct: 82  EGAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKAD 141

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            EVSNRHGHTCLMI+CYKGH  I +YLL   AD+NRKS KGNTALHDCAE+GS++I+K+L
Sbjct: 142 LEVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKML 201

Query: 195 LSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           L + A+M+ D YGMTPLL+A+V GH +IV++L      S+ E+I+ALELLGA+
Sbjct: 202 LMYCAKMEKDGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGAT 254

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Homo sapiens (taxid: 9606)

>sp|A7MB89|FEM1C_BOVIN Protein fem-1 homolog C OS=Bos taurus GN=FEM1C PE=2 SV=1

 Score =  306 bits (784), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 143/233 (61%), Positives = 183/233 (78%)

Query: 15  FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
            L +++ EE+  +   K  GATPL+MA R GH ++VE+L+++C A +E  G+V FD ET+
Sbjct: 22  LLASKSKEEVSSLISEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETI 81

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGAPPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +VKYLVEH AD
Sbjct: 82  EGAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKAD 141

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            EVSNRHGHTCLMI+CYKGH  I +YLL   AD+NRKS KGNTALHDCAE+GS++I+K+L
Sbjct: 142 LEVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKML 201

Query: 195 LSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           L + A+M+ D YGMTPLL+A+V GH +IV++L      S+ E+I+ALELLGA+
Sbjct: 202 LMYCAKMEKDGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGAT 254

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Bos taurus (taxid: 9913)

>sp|Q8CEF1|FEM1C_MOUSE Protein fem-1 homolog C OS=Mus musculus GN=Fem1c PE=2 SV=1

 Score =  304 bits (778), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 142/233 (60%), Positives = 182/233 (78%)

Query: 15  FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
            L +++  E+  +   K  GATPL+MA R GH ++VE+L+++C A +E  G+V FD ET+
Sbjct: 22  LLASKSKAEVSSLISEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETI 81

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGAPPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +VKYLVEH AD
Sbjct: 82  EGAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKAD 141

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            EVSNRHGHTCLMI+CYKGH  I +YLL   AD+NRKS KGNTALHDCAE+GS++I+K+L
Sbjct: 142 LEVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKML 201

Query: 195 LSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           L + A+M+ D YGMTPLL+A+V GH +IV++L      S+ E+I+ALELLGA+
Sbjct: 202 LMYCAKMEKDGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGAT 254

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Mus musculus (taxid: 10090)

>sp|Q6P9Z4|FEM1A_DANRE Protein fem-1 homolog A OS=Danio rerio GN=fem1a PE=2 SV=1

 Score =  299 bits (766), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 142/235 (60%), Positives = 181/235 (77%)

Query: 13  QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
           Q  L  ++ EE   + + +  G TPL++A R GH  +V +L++ C A+V   G+V FD E
Sbjct: 20  QKLLINKSPEERAALAEERTEGGTPLLIAARYGHLPVVHFLLERCGANVALGGSVNFDGE 79

Query: 73  TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
           T+EGAPPLW A+AAGHLP+V+ L+EHGA VN+ T TNSTPLRAACFDGH  +V+YLVEH 
Sbjct: 80  TIEGAPPLWAASAAGHLPVVKALLEHGAPVNNTTLTNSTPLRAACFDGHLEIVRYLVEHQ 139

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           AD EV+NRHGHTCLMI+CYKGH  I ++LL   AD+NRKS KGNTALHDCAE+GS+EI+K
Sbjct: 140 ADLEVANRHGHTCLMISCYKGHREIAQFLLEKGADVNRKSVKGNTALHDCAESGSLEIMK 199

Query: 193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           +LL   ARM+ D YGMTPLLAA+V GH +IVE+L+     SR+++I ALELLGA+
Sbjct: 200 MLLKCDARMERDGYGMTPLLAASVTGHTNIVEFLVHQPRASREQRIHALELLGAT 254

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Danio rerio (taxid: 7955)

>sp|Q7T3P8|FEM1C_DANRE Protein fem-1 homolog C OS=Danio rerio GN=fem1c PE=2 SV=2

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/231 (60%), Positives = 175/231 (75%)

Query: 17  EARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEG 76
           E ++  E+  +   K  GATPL+MA R GH E+VE+L++ C A VE  G+V FD E +EG
Sbjct: 24  ENKSDREVLKLMAEKTNGATPLLMASRYGHLELVEFLMECCCAPVELGGSVNFDGEVIEG 83

Query: 77  APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE 136
           APPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +V+YLVEH AD E
Sbjct: 84  APPLWAASAAGHLKVVQSLLGHGASVNNTTLTNSTPLRAACFDGHLDIVRYLVEHQADLE 143

Query: 137 VSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLS 196
           V+NRHGHTCLMI+CYKGH  I ++LL   AD+NR+S KGNTALHDCAE+GS+EI+K+LL 
Sbjct: 144 VANRHGHTCLMISCYKGHREIAQFLLEKGADVNRRSVKGNTALHDCAESGSLEIMKMLLK 203

Query: 197 HGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
            GA M+ D YGMTPLL+A+V GH +IV++L         E+I ALELLGA+
Sbjct: 204 FGASMEKDGYGMTPLLSASVTGHTNIVDFLTAHPQTGLAERISALELLGAT 254

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Danio rerio (taxid: 7955)

>sp|Q4V890|FEM1A_RAT Protein fem-1 homolog A OS=Rattus norvegicus GN=Fem1a PE=2 SV=1

 Score =  287 bits (734), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/210 (65%), Positives = 164/210 (78%), Gaps = 1/210 (0%)

Query: 19  RTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAP 78
           R  EEI+ +     GG TPL++A R GH ++VEYLV  C A VE +G+V FD ET+EGAP
Sbjct: 26  RGREEIEELLGEVAGGGTPLLIAARRGHLDVVEYLVDNCGASVEASGSVHFDGETIEGAP 85

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV-EHGADFEV 137
           PLW A+AAGHL +V+ L+  GA VN  TRTNSTPLRAACFDGH  VV+YLV EH AD EV
Sbjct: 86  PLWAASAAGHLAVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLDVVRYLVGEHKADLEV 145

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +NRHGHTCLMI+CYKGH  I +YLL   A +NR+S+KGNTALHDCAE+GS+EIL+LLL  
Sbjct: 146 ANRHGHTCLMISCYKGHREIARYLLERGAQVNRRSAKGNTALHDCAESGSLEILQLLLGC 205

Query: 198 GARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
            ARM+ D YGMTPLLAA+V GH +IVEYLI
Sbjct: 206 HARMERDGYGMTPLLAASVTGHTNIVEYLI 235

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. May participate in antiinflammatory signaling via its interaction with PTGER4.

Rattus norvegicus (taxid: 10116)

>sp|Q9BSK4|FEM1A_HUMAN Protein fem-1 homolog A OS=Homo sapiens GN=FEM1A PE=1 SV=1

 Score =  287 bits (734), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/210 (65%), Positives = 164/210 (78%), Gaps = 1/210 (0%)

Query: 19  RTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAP 78
           R+ EE+  +T    GG TPL++A R GH ++VEYLV  C A VE  G+V FD ET+EGAP
Sbjct: 26  RSREELDELTGEVAGGGTPLLIAARYGHLDVVEYLVDRCGASVEAGGSVHFDGETIEGAP 85

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV-EHGADFEV 137
           PLW A+AAGHL +V+ L+  GA VN  TRTNSTPLRAACFDGH  VV+YLV EH AD EV
Sbjct: 86  PLWAASAAGHLDVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLEVVRYLVGEHQADLEV 145

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +NRHGHTCLMI+CYKGH  I +YLL   A +NR+S+KGNTALHDCAE+GS+EIL+LLL  
Sbjct: 146 ANRHGHTCLMISCYKGHREIARYLLEQGAQVNRRSAKGNTALHDCAESGSLEILQLLLGC 205

Query: 198 GARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
            ARM+ D YGMTPLLAA+V GH +IVEYLI
Sbjct: 206 KARMERDGYGMTPLLAASVTGHTNIVEYLI 235

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit (By similarity). May participate in antiinflammatory signaling via its interaction with PTGER4.

Homo sapiens (taxid: 9606)

>sp|Q29RM5|FEM1A_BOVIN Protein fem-1 homolog A OS=Bos taurus GN=FEM1A PE=2 SV=1

 Score =  283 bits (725), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 136/210 (64%), Positives = 163/210 (77%), Gaps = 1/210 (0%)

Query: 19  RTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAP 78
           R+ EE++ +T     G TPL++A R GH ++VEYLV  C A VE  G+V FD E +EGAP
Sbjct: 26  RSREELEELTGEVASGGTPLLIAARYGHLDVVEYLVDRCGASVEAGGSVHFDGEIIEGAP 85

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV-EHGADFEV 137
           PLW A+AAGHL +V+ L+  GA VN  TRTNSTPLRAACFDGH  VV+YLV EH AD EV
Sbjct: 86  PLWAASAAGHLDVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLEVVRYLVGEHQADLEV 145

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +NRHGHTCLMI+CYKGH  I +YLL   A +NR+S+KGNTALHDCAE+GS+EIL+LLL  
Sbjct: 146 ANRHGHTCLMISCYKGHREIARYLLEQGAQVNRRSAKGNTALHDCAESGSLEILQLLLGC 205

Query: 198 GARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
            ARM+ D YGMTPLLAA+V GH +IVEYLI
Sbjct: 206 NARMERDGYGMTPLLAASVTGHTNIVEYLI 235

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. May participate in antiinflammatory signaling via its interaction with PTGER4.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
375493330	638	fem-1 homolog C-like protein [Locusta mi	0.951	0.368	0.745	1e-103
189234829	630	PREDICTED: similar to sex-determining pr	0.914	0.358	0.748	1e-98
157128550	602	sex-determining protein fem-1 [Aedes aeg	0.995	0.408	0.681	2e-98
170058345	664	sex-determining protein fem-1 [Culex qui	0.910	0.338	0.687	1e-97
357609410	694	putative sex-determining protein fem-1 [	0.943	0.335	0.689	2e-95
289740901	646	ankyrin repeat protein [Glossina morsita	0.991	0.379	0.664	2e-95
321463161	633	fem-1-like protein [Daphnia pulex]	0.951	0.371	0.690	2e-94
195445805	678	GK11005 [Drosophila willistoni] gi|19416	0.951	0.346	0.693	1e-93
383855788	619	PREDICTED: protein fem-1 homolog CG6966-	0.943	0.376	0.683	3e-93
242016242	678	Sex-determining protein fem-1, putative	0.955	0.348	0.679	4e-93

>gi|375493330|dbj|BAL61213.1| fem-1 homolog C-like protein [Locusta migratoria manilensis]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/236 (74%), Positives = 208/236 (88%), Gaps = 1/236 (0%)

Query: 13  QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
           + FLE RT EEIQM+   + GGATPL+MACRNGH ++ EYLV+ C AD+E+ G+V+FD E
Sbjct: 20  KVFLEQRTKEEIQMLVSARTGGATPLVMACRNGHHDVAEYLVERCGADIEQPGSVVFDGE 79

Query: 73  TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
           T+EGAPPLWCAAAAGHL +V+ LV HGA VN+ TRTNSTPLRAACFDGHF +VK+LV++G
Sbjct: 80  TIEGAPPLWCAAAAGHLSVVRLLVRHGACVNNTTRTNSTPLRAACFDGHFEIVKFLVDNG 139

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           AD EV+NRHGHTCLMIACYKGH+RI K+LLSLNA +NRKS KGNTALHDCAE+GS+EILK
Sbjct: 140 ADIEVANRHGHTCLMIACYKGHFRIAKFLLSLNASVNRKSVKGNTALHDCAESGSLEILK 199

Query: 193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGL-NIVSRKEKIDALELLGAS 247
           LL+SHGA+MDVDSYGMTPLLAA+V GH HIVEYLI L N+VSR E++DALELLGA+
Sbjct: 200 LLISHGAQMDVDSYGMTPLLAASVTGHTHIVEYLIKLPNLVSRHERVDALELLGAT 255

Source: Locusta migratoria manilensis

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234829|ref|XP_001811696.1| PREDICTED: similar to sex-determining protein fem-1 [Tribolium castaneum] gi|270001481|gb|EEZ97928.1| hypothetical protein TcasGA2_TC000315 [Tribolium castaneum]

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 197/227 (86%), Gaps = 1/227 (0%)

Query: 22  EEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLW 81
           EE+ M+   K  GATPL++ACRNGH ++ EYL++ C AD+E+ G+VMFD ET+EGAPPLW
Sbjct: 30  EEVSMLVAAKTSGATPLVIACRNGHYDVAEYLIERCHADIEQPGSVMFDGETIEGAPPLW 89

Query: 82  CAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH 141
           CAAAAGHL IV+ L+ HGAKVNS TRTNSTPLRAACFDGH  +VKYLV+HGAD EV+NRH
Sbjct: 90  CAAAAGHLDIVKLLISHGAKVNSTTRTNSTPLRAACFDGHLDIVKYLVQHGADIEVANRH 149

Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
           GH+CLMIACYKGH RI +YLLSL A +NRKS KGNTALHDCAE+GS+EILKLL+ +GA M
Sbjct: 150 GHSCLMIACYKGHIRIARYLLSLKASVNRKSVKGNTALHDCAESGSLEILKLLIDNGATM 209

Query: 202 DVDSYGMTPLLAAAVVGHQHIVEYLIGL-NIVSRKEKIDALELLGAS 247
           DVDSYGMTPLLAAAV GH HIVEYLI L ++VSRKEKIDALELLGA+
Sbjct: 210 DVDSYGMTPLLAAAVTGHNHIVEYLIKLPHLVSRKEKIDALELLGAT 256

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128550|ref|XP_001661480.1| sex-determining protein fem-1 [Aedes aegypti] gi|108872535|gb|EAT36760.1| AAEL011182-PA [Aedes aegypti]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 169/248 (68%), Positives = 205/248 (82%), Gaps = 2/248 (0%)

Query: 2   EDLTLDEYTHYQA--FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKA 59
           + L L  Y+ Y    ++  R   EI+M+   K GGATPL++ACRNGH ++V+YL+K C A
Sbjct: 22  QPLHLKTYSTYSTPRYISGRPQNEIEMLVTAKTGGATPLLIACRNGHFDVVQYLIKRCHA 81

Query: 60  DVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFD 119
           DVE++G+V+FD ET+EGAPPLWCA+AAGH  IV+ LV+HGAKVNS T+TNSTPLRAACFD
Sbjct: 82  DVEQSGSVIFDGETIEGAPPLWCASAAGHTSIVKLLVQHGAKVNSTTKTNSTPLRAACFD 141

Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
           GH+ +VKYLV HGAD EV+NRHGHTCLMIACYKGHY+I  YLLSL AD+NR+S KGNTAL
Sbjct: 142 GHYEIVKYLVSHGADIEVANRHGHTCLMIACYKGHYKIAHYLLSLKADVNRRSVKGNTAL 201

Query: 180 HDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKID 239
           HDCAE+GS+EIL+LLL HGA MDVDSYGMTPLLAA+V GH  IVE+LI L  V R+++I 
Sbjct: 202 HDCAESGSLEILQLLLQHGATMDVDSYGMTPLLAASVTGHLPIVEHLISLPFVKREDRIA 261

Query: 240 ALELLGAS 247
           ALELLGA+
Sbjct: 262 ALELLGAT 269

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058345|ref|XP_001864882.1| sex-determining protein fem-1 [Culex quinquefasciatus] gi|167877462|gb|EDS40845.1| sex-determining protein fem-1 [Culex quinquefasciatus]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 165/240 (68%), Positives = 201/240 (83%)

Query: 8   EYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAV 67
           E +  + ++  R   E +M+   K GGATPL++ACRNGH ++V+YL+K C ADVE+ G+V
Sbjct: 50  EKSMRERYISGRPQNETEMLVTAKTGGATPLLIACRNGHFDVVQYLIKRCHADVEQPGSV 109

Query: 68  MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
           +FD ET+EGAPPLWCA+AAGH  IV+ LV+HGAKVNS T+TNSTPLRAACFDGH+ +VKY
Sbjct: 110 IFDGETIEGAPPLWCASAAGHTSIVKLLVQHGAKVNSTTKTNSTPLRAACFDGHYEIVKY 169

Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
           LV HGAD EV+NRHGHTCLMIACYKGHY+I +YLLSL AD+NR+S KGNTALHDCAE+GS
Sbjct: 170 LVSHGADIEVANRHGHTCLMIACYKGHYKIAQYLLSLKADVNRRSVKGNTALHDCAESGS 229

Query: 188 IEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           +EIL+LLL HGA MDVDSYGMTPLLAA+V GH  IVE+LI L  V R+++I ALELLGA+
Sbjct: 230 LEILQLLLQHGATMDVDSYGMTPLLAASVTGHLPIVEHLISLPFVKREDRIAALELLGAT 289

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609410|gb|EHJ66435.1| putative sex-determining protein fem-1 [Danaus plexippus]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/235 (68%), Positives = 200/235 (85%), Gaps = 2/235 (0%)

Query: 15  FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
           +L +   +E+ M+   K  GATPL++ACRNGH ++ EYL++ CKAD+E+ G+V FD ET+
Sbjct: 74  YLHSWRSDELSMLVGAKVTGATPLVIACRNGHYDVAEYLIERCKADIEQPGSVTFDGETI 133

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGAPPLWCAAAAGH+P+V+ LV  GA VNS TRT+STPLRAACFDGH+ +VK+LVE+GAD
Sbjct: 134 EGAPPLWCAAAAGHMPLVRLLVRAGANVNSTTRTHSTPLRAACFDGHYDIVKFLVENGAD 193

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            E++NRHGHTCLMIACYKGH +I KYLLSLNAD+NRKS KGNTALHDCAE+GS+ ILK+L
Sbjct: 194 IEIANRHGHTCLMIACYKGHIQIAKYLLSLNADVNRKSVKGNTALHDCAESGSLHILKML 253

Query: 195 LSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLN--IVSRKEKIDALELLGAS 247
           L+HGA MDVDSYGMTPLLAA+V GH HIVE LI +   +V+R+E+IDALELLGA+
Sbjct: 254 LAHGATMDVDSYGMTPLLAASVTGHTHIVELLINIEHGLVTRQERIDALELLGAT 308

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740901|gb|ADD19198.1| ankyrin repeat protein [Glossina morsitans morsitans]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 197/253 (77%), Gaps = 8/253 (3%)

Query: 3   DLTLDEYT--------HYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLV 54
           DL LD Y           ++ L  R+  E+  +  +K  GATPL+MACRNGH EIV+YL+
Sbjct: 11  DLILDAYNAARDNNLPRLKSVLSGRSSSEVSTLISWKINGATPLVMACRNGHLEIVDYLL 70

Query: 55  KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLR 114
            +C ADVE+ G+V FD E +E APPLWCAAAAGHL IV+ LV HGA VNS TRTNSTPLR
Sbjct: 71  TKCNADVEKVGSVSFDGEPIEDAPPLWCAAAAGHLSIVKMLVRHGANVNSTTRTNSTPLR 130

Query: 115 AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK 174
           AACFDGHF +VKYL+ HGADFEV+NRHGHTCLMIACYKGH++I +YLLSL A++NR S K
Sbjct: 131 AACFDGHFEIVKYLIRHGADFEVANRHGHTCLMIACYKGHFKIAQYLLSLKAEVNRCSVK 190

Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR 234
           GNTALHDCAE+GS+EIL+LLL HGA M  D YGMTPLLAA+V GH  IVE+LI L  V R
Sbjct: 191 GNTALHDCAESGSLEILQLLLKHGATMKTDYYGMTPLLAASVTGHLPIVEHLISLPSVCR 250

Query: 235 KEKIDALELLGAS 247
           K +IDALELLGA+
Sbjct: 251 KSRIDALELLGAT 263

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321463161|gb|EFX74179.1| fem-1-like protein [Daphnia pulex]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 163/236 (69%), Positives = 197/236 (83%), Gaps = 1/236 (0%)

Query: 13  QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
           + FL+ R   E+ ++   +  GATP++MACRNGH ++VEYLV+ C AD+E+ G+V FD E
Sbjct: 20  KGFLDHRARNEVALLVSARTNGATPMLMACRNGHLDVVEYLVERCGADIEQAGSVTFDGE 79

Query: 73  TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
           T+EGAPPLW AAAAGH+ IV+FLV  GA VN  T+TNSTPLRAACFDGHF +VKYLV+HG
Sbjct: 80  TIEGAPPLWVAAAAGHVHIVRFLVRGGASVNCTTKTNSTPLRAACFDGHFEIVKYLVDHG 139

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           AD EV+NRHGHTCLMIACYKGH +I +YL+ L AD+NRKS KGNTALHDCAE+GS+EIL+
Sbjct: 140 ADMEVANRHGHTCLMIACYKGHLKIARYLIELAADVNRKSVKGNTALHDCAESGSLEILQ 199

Query: 193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI-GLNIVSRKEKIDALELLGAS 247
           LLL+ GA+M VDSYGMTPLLAAAV GH HIVEY++  L+ V RKEKIDALELLGA+
Sbjct: 200 LLLASGAKMVVDSYGMTPLLAAAVSGHTHIVEYIVHNLDTVGRKEKIDALELLGAT 255

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445805|ref|XP_002070493.1| GK11005 [Drosophila willistoni] gi|194166578|gb|EDW81479.1| GK11005 [Drosophila willistoni]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 163/235 (69%), Positives = 195/235 (82%)

Query: 13  QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
           +A L  ++  EI ++   K  GATPL+++CRNGH +IVEYL+ +C+A+V++ G+V FD E
Sbjct: 20  KATLANKSAAEIAILISAKVNGATPLVISCRNGHYDIVEYLLTKCRANVQQVGSVSFDGE 79

Query: 73  TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
            +E APPLWCAAAAGHL IV+ LV  GA VNS TRTNSTPLRAACFDGH+ +VKYLV H 
Sbjct: 80  PIEDAPPLWCAAAAGHLGIVKMLVRRGANVNSTTRTNSTPLRAACFDGHYEIVKYLVHHN 139

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           ADFEV+NRHGHTCLMIACYKGHYRI +YLLSLNAD+NR S KGNTALHDCAE+GS++IL+
Sbjct: 140 ADFEVANRHGHTCLMIACYKGHYRIAQYLLSLNADVNRCSIKGNTALHDCAESGSLQILQ 199

Query: 193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
           LLL HGA MDVD YGMTPLLAA+V GH  IVE+LI L  VSR+ +IDALELLGA+
Sbjct: 200 LLLKHGATMDVDYYGMTPLLAASVTGHMPIVEHLITLPCVSREARIDALELLGAT 254

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855788|ref|XP_003703392.1| PREDICTED: protein fem-1 homolog CG6966-like [Megachile rotundata]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 160/234 (68%), Positives = 198/234 (84%), Gaps = 1/234 (0%)

Query: 15  FLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETV 74
           FL+ R  +E+  +   K  GATPL+MACRNGH ++ EYL+KEC AD+E+ G+V+F  ET+
Sbjct: 18  FLDHRGKDEVGQLVGAKTHGATPLVMACRNGHYDVAEYLIKECGADIEQPGSVVFGGETI 77

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGAPPLWCAAAAGHL +V+ LV+ GAKVNS T+TNSTPLRAACFDG+F +V++LV HGAD
Sbjct: 78  EGAPPLWCAAAAGHLALVRLLVKRGAKVNSTTKTNSTPLRAACFDGYFEIVRFLVNHGAD 137

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            E++NR GHT LMIACYKGH +IVK+LL+L AD+NRKS +G TALHDCAE+GS+EI+K+L
Sbjct: 138 IELANRQGHTNLMIACYKGHIKIVKFLLALKADVNRKSVRGYTALHDCAESGSLEIVKVL 197

Query: 195 LSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGL-NIVSRKEKIDALELLGAS 247
           + HGARMDVDSYGMTPLL AAV GH+HIVEY I +  +VSRKE+IDALELLGA+
Sbjct: 198 IEHGARMDVDSYGMTPLLVAAVTGHKHIVEYFISMERLVSRKERIDALELLGAT 251

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016242|ref|XP_002428738.1| Sex-determining protein fem-1, putative [Pediculus humanus corporis] gi|212513423|gb|EEB16000.1| Sex-determining protein fem-1, putative [Pediculus humanus corporis]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 161/237 (67%), Positives = 202/237 (85%), Gaps = 1/237 (0%)

Query: 12  YQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDH 71
           +  FLE R   E+ M+   K  GATPL++ACRNGH  + EYL++ C A++E+ G+V+FD 
Sbjct: 62  FFVFLEHREEIEVAMLVTAKTHGATPLVVACRNGHYYVAEYLIQRCNANIEQPGSVVFDG 121

Query: 72  ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
           ET+EGAPPLWCAAAAG L +V+ LV+HGA VNS T+TNSTPLRAACFDG F VVK+LV++
Sbjct: 122 ETIEGAPPLWCAAAAGCLDVVKLLVKHGACVNSVTKTNSTPLRAACFDGRFEVVKFLVDN 181

Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
           GAD E++N+HGHTCLMIACYK H++I KYLLS+ AD+NRKSSKGNTALHDCAE+GS+EIL
Sbjct: 182 GADIEIANKHGHTCLMIACYKKHFKIAKYLLSIGADVNRKSSKGNTALHDCAESGSLEIL 241

Query: 192 KLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGL-NIVSRKEKIDALELLGAS 247
           +LL+S+GA+MDVDSYGMTPLLAA+V GH+HIVE LI L N++SR E++DALELLGA+
Sbjct: 242 QLLISYGAKMDVDSYGMTPLLAASVAGHRHIVEALIKLPNLISRTERLDALELLGAT 298

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
FB|FBgn0038286	664	CG6966 [Drosophila melanogaste	0.951	0.353	0.689	4.3e-86
UNIPROTKB|A7MB89	617	FEM1C "Protein fem-1 homolog C	0.939	0.376	0.616	1.5e-76
UNIPROTKB|Q96JP0	617	FEM1C "Protein fem-1 homolog C	0.939	0.376	0.616	1.5e-76
MGI|MGI:2444737	617	Fem1c "fem-1 homolog c (C.eleg	0.939	0.376	0.612	6.3e-76
UNIPROTKB|Q9BSK4	669	FEM1A "Protein fem-1 homolog A	0.870	0.321	0.648	6.7e-75
UNIPROTKB|E1C571	682	FEM1A "Uncharacterized protein	0.914	0.331	0.609	1.1e-74
ZFIN|ZDB-GENE-030131-5824	617	fem1a "fem-1 homolog a (C. ele	0.951	0.380	0.604	4e-74
ZFIN|ZDB-GENE-031008-3	618	fem1c "fem-1 homolog c (C.eleg	0.951	0.380	0.604	1.1e-73
RGD|1561112	654	Fem1a "fem-1 homolog a (C. ele	0.870	0.328	0.648	4.1e-72
MGI|MGI:1335089	654	Fem1a "feminization 1 homolog	0.870	0.328	0.643	6.7e-72

FB|FBgn0038286 CG6966 [Drosophila melanogaster (taxid:7227)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 162/235 (68%), Positives = 194/235 (82%)

Query:    13 QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
             +A L  ++  E+  +   K  GATPL+++CRNGH +IVEYL+ +C+A+VE+ G+V FD E
Sbjct:    20 KATLYNKSSVEVGSLISAKVNGATPLVISCRNGHYDIVEYLLTKCRANVEQVGSVSFDGE 79

Query:    73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
              +E APPLWCAAAAGHL IV+ LV  GA VNS TRTNSTPLRAACFDGH+ +VKYLV HG
Sbjct:    80 PIEDAPPLWCAAAAGHLGIVKMLVRRGANVNSTTRTNSTPLRAACFDGHYEIVKYLVHHG 139

Query:   133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
             ADFEV+NRHGHTCLMIACYKGH+RI +YLLSLNAD+NR S KGNTALHDCAE+GS++IL+
Sbjct:   140 ADFEVANRHGHTCLMIACYKGHFRIAQYLLSLNADVNRCSVKGNTALHDCAESGSLQILQ 199

Query:   193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
             LLL HGA MDVD YGMTPLLAA+V GH  IVE+LI L  VSR+ +I ALELLGA+
Sbjct:   200 LLLKHGATMDVDYYGMTPLLAASVTGHMPIVEHLITLPCVSRESRIHALELLGAT 254

GO:0005575 "cellular_component" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|A7MB89 FEM1C "Protein fem-1 homolog C" [Bos taurus (taxid:9913)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 143/232 (61%), Positives = 183/232 (78%)

Query:    16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
             L +++ EE+  +   K  GATPL+MA R GH ++VE+L+++C A +E  G+V FD ET+E
Sbjct:    23 LASKSKEEVSSLISEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETIE 82

Query:    76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
             GAPPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +VKYLVEH AD 
Sbjct:    83 GAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKADL 142

Query:   136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
             EVSNRHGHTCLMI+CYKGH  I +YLL   AD+NRKS KGNTALHDCAE+GS++I+K+LL
Sbjct:   143 EVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKMLL 202

Query:   196 SHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
              + A+M+ D YGMTPLL+A+V GH +IV++L      S+ E+I+ALELLGA+
Sbjct:   203 MYCAKMEKDGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGAT 254

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96JP0 FEM1C "Protein fem-1 homolog C" [Homo sapiens (taxid:9606)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 143/232 (61%), Positives = 183/232 (78%)

Query:    16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
             L +++ EE+  +   K  GATPL+MA R GH ++VE+L+++C A +E  G+V FD ET+E
Sbjct:    23 LASKSKEEVSSLISEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETIE 82

Query:    76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
             GAPPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +VKYLVEH AD 
Sbjct:    83 GAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKADL 142

Query:   136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
             EVSNRHGHTCLMI+CYKGH  I +YLL   AD+NRKS KGNTALHDCAE+GS++I+K+LL
Sbjct:   143 EVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKMLL 202

Query:   196 SHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
              + A+M+ D YGMTPLL+A+V GH +IV++L      S+ E+I+ALELLGA+
Sbjct:   203 MYCAKMEKDGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGAT 254

GO:0005737 "cytoplasm" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

MGI|MGI:2444737 Fem1c "fem-1 homolog c (C.elegans)" [Mus musculus (taxid:10090)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 142/232 (61%), Positives = 182/232 (78%)

Query:    16 LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
             L +++  E+  +   K  GATPL+MA R GH ++VE+L+++C A +E  G+V FD ET+E
Sbjct:    23 LASKSKAEVSSLISEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEVGGSVNFDGETIE 82

Query:    76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
             GAPPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +VKYLVEH AD 
Sbjct:    83 GAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKADL 142

Query:   136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
             EVSNRHGHTCLMI+CYKGH  I +YLL   AD+NRKS KGNTALHDCAE+GS++I+K+LL
Sbjct:   143 EVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKMLL 202

Query:   196 SHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
              + A+M+ D YGMTPLL+A+V GH +IV++L      S+ E+I+ALELLGA+
Sbjct:   203 MYCAKMEKDGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGAT 254

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9BSK4 FEM1A "Protein fem-1 homolog A" [Homo sapiens (taxid:9606)]

 Score = 729 (261.7 bits), Expect = 6.7e-75, Sum P(2) = 6.7e-75
 Identities = 140/216 (64%), Positives = 166/216 (76%)

Query:    13 QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
             Q  L  R+ EE+  +T    GG TPL++A R GH ++VEYLV  C A VE  G+V FD E
Sbjct:    20 QKLLSGRSREELDELTGEVAGGGTPLLIAARYGHLDVVEYLVDRCGASVEAGGSVHFDGE 79

Query:    73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV-EH 131
             T+EGAPPLW A+AAGHL +V+ L+  GA VN  TRTNSTPLRAACFDGH  VV+YLV EH
Sbjct:    80 TIEGAPPLWAASAAGHLDVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLEVVRYLVGEH 139

Query:   132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
              AD EV+NRHGHTCLMI+CYKGH  I +YLL   A +NR+S+KGNTALHDCAE+GS+EIL
Sbjct:   140 QADLEVANRHGHTCLMISCYKGHREIARYLLEQGAQVNRRSAKGNTALHDCAESGSLEIL 199

Query:   192 KLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
             +LLL   ARM+ D YGMTPLLAA+V GH +IVEYLI
Sbjct:   200 QLLLGCKARMERDGYGMTPLLAASVTGHTNIVEYLI 235

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISS

GO:0031867 "EP4 subtype prostaglandin E2 receptor binding" evidence=IPI

GO:0050728 "negative regulation of inflammatory response" evidence=IDA

UNIPROTKB|E1C571 FEM1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 730 (262.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
 Identities = 142/233 (60%), Positives = 176/233 (75%)

Query:    13 QAFLEARTHEEIQMVTKFKFGG------ATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
             Q  L +R+ EE++ +T    GG      +TPL++A R+GH E+VEYL+  C A VEE G+
Sbjct:    20 QKLLGSRSREELEALTAGPGGGDGPGGGSTPLLIAARHGHLEVVEYLLDHCGARVEEGGS 79

Query:    67 VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK 126
             V FD ET+EGAPPLW A+AAGHL +V+ L++HGA VN  T TNSTPLRAACFDGH  +V+
Sbjct:    80 VNFDGETIEGAPPLWAASAAGHLGVVRSLLDHGASVNQTTLTNSTPLRAACFDGHLEIVR 139

Query:   127 YLV-EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEA 185
             YLV E GAD EV+NRHGHTCLMI+CYKGH  I +YLL   AD+NR+S KGNTALHDCAE+
Sbjct:   140 YLVGERGADLEVANRHGHTCLMISCYKGHREIARYLLEKGADVNRRSVKGNTALHDCAES 199

Query:   186 GSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKI 238
             GS+EIL+LLL   ARM+ D YGMTPLLAA+V GH +IVEYLI   +   +E +
Sbjct:   200 GSLEILQLLLRSKARMEKDGYGMTPLLAASVTGHTNIVEYLIQGGLQQEEEDV 252

GO:0031867 "EP4 subtype prostaglandin E2 receptor binding" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

ZFIN|ZDB-GENE-030131-5824 fem1a "fem-1 homolog a (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 142/235 (60%), Positives = 181/235 (77%)

Query:    13 QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
             Q  L  ++ EE   + + +  G TPL++A R GH  +V +L++ C A+V   G+V FD E
Sbjct:    20 QKLLINKSPEERAALAEERTEGGTPLLIAARYGHLPVVHFLLERCGANVALGGSVNFDGE 79

Query:    73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
             T+EGAPPLW A+AAGHLP+V+ L+EHGA VN+ T TNSTPLRAACFDGH  +V+YLVEH 
Sbjct:    80 TIEGAPPLWAASAAGHLPVVKALLEHGAPVNNTTLTNSTPLRAACFDGHLEIVRYLVEHQ 139

Query:   133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
             AD EV+NRHGHTCLMI+CYKGH  I ++LL   AD+NRKS KGNTALHDCAE+GS+EI+K
Sbjct:   140 ADLEVANRHGHTCLMISCYKGHREIAQFLLEKGADVNRKSVKGNTALHDCAESGSLEIMK 199

Query:   193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
             +LL   ARM+ D YGMTPLLAA+V GH +IVE+L+     SR+++I ALELLGA+
Sbjct:   200 MLLKCDARMERDGYGMTPLLAASVTGHTNIVEFLVHQPRASREQRIHALELLGAT 254

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-031008-3 fem1c "fem-1 homolog c (C.elegans)" [Danio rerio (taxid:7955)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 142/235 (60%), Positives = 177/235 (75%)

Query:    13 QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
             Q  LE ++  E+  +   K  GATPL+MA R GH E+VE+L++ C A VE  G+V FD E
Sbjct:    20 QKLLENKSDREVLKLMAEKTNGATPLLMASRYGHLELVEFLMECCCAPVELGGSVNFDGE 79

Query:    73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
              +EGAPPLW A+AAGHL +VQ L+ HGA VN+ T TNSTPLRAACFDGH  +V+YLVEH 
Sbjct:    80 VIEGAPPLWAASAAGHLKVVQSLLGHGASVNNTTLTNSTPLRAACFDGHLDIVRYLVEHQ 139

Query:   133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
             AD EV+NRHGHTCLMI+CYKGH  I ++LL   AD+NR+S KGNTALHDCAE+GS+EI+K
Sbjct:   140 ADLEVANRHGHTCLMISCYKGHREIAQFLLEKGADVNRRSVKGNTALHDCAESGSLEIMK 199

Query:   193 LLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
             +LL  GA M+ D YGMTPLL+A+V GH +IV++L         E+I ALELLGA+
Sbjct:   200 MLLKFGASMEKDGYGMTPLLSASVTGHTNIVDFLTAHPQTGLAERISALELLGAT 254

GO:0005737 "cytoplasm" evidence=IEA

RGD|1561112 Fem1a "fem-1 homolog a (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 140/216 (64%), Positives = 166/216 (76%)

Query:    13 QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
             Q  L  R  EEI+ +     GG TPL++A R GH ++VEYLV  C A VE +G+V FD E
Sbjct:    20 QKLLAGRGREEIEELLGEVAGGGTPLLIAARRGHLDVVEYLVDNCGASVEASGSVHFDGE 79

Query:    73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV-EH 131
             T+EGAPPLW A+AAGHL +V+ L+  GA VN  TRTNSTPLRAACFDGH  VV+YLV EH
Sbjct:    80 TIEGAPPLWAASAAGHLAVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLDVVRYLVGEH 139

Query:   132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
              AD EV+NRHGHTCLMI+CYKGH  I +YLL   A +NR+S+KGNTALHDCAE+GS+EIL
Sbjct:   140 KADLEVANRHGHTCLMISCYKGHREIARYLLERGAQVNRRSAKGNTALHDCAESGSLEIL 199

Query:   192 KLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
             +LLL   ARM+ D YGMTPLLAA+V GH +IVEYLI
Sbjct:   200 QLLLGCHARMERDGYGMTPLLAASVTGHTNIVEYLI 235

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0031867 "EP4 subtype prostaglandin E2 receptor binding" evidence=IEA;ISO

GO:0043407 "negative regulation of MAP kinase activity" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=IEA;ISO

GO:0051438 "regulation of ubiquitin-protein ligase activity" evidence=ISS

MGI|MGI:1335089 Fem1a "feminization 1 homolog a (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 139/216 (64%), Positives = 166/216 (76%)

Query:    13 QAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE 72
             Q  L  R  EE++ +     GG TPL++A R GH ++VEYLV  C A VE +G+V FD E
Sbjct:    20 QKLLAGRGREELEELLGEVAGGGTPLLIAARRGHLDVVEYLVDHCGASVEASGSVHFDGE 79

Query:    73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV-EH 131
             T+EGAPPLW A+AAGHL +V+ L+  GA VN  TRTNSTPLRAACFDGH  VV+YLV EH
Sbjct:    80 TIEGAPPLWAASAAGHLAVVRSLLRRGASVNRTTRTNSTPLRAACFDGHLDVVRYLVGEH 139

Query:   132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
              AD EV+NRHGHTCLMI+CYKGH  I +YLL   A +NR+S+KGNTALHDCAE+GS+EIL
Sbjct:   140 KADLEVANRHGHTCLMISCYKGHREIARYLLERGAQVNRRSAKGNTALHDCAESGSLEIL 199

Query:   192 KLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
             +LLL   ARM+ D YGMTPLLAA+V GH +IVEYLI
Sbjct:   200 QLLLGCHARMERDGYGMTPLLAASVTGHTNIVEYLI 235

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0031867 "EP4 subtype prostaglandin E2 receptor binding" evidence=ISO

GO:0043407 "negative regulation of MAP kinase activity" evidence=IDA

GO:0050728 "negative regulation of inflammatory response" evidence=ISO;IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P9Z4	FEM1A_DANRE	No assigned EC number	0.6042	0.8987	0.3598	yes	N/A
P17221	FEM1_CAEEL	No assigned EC number	0.5023	0.8582	0.3231	yes	N/A
Q8CEF1	FEM1C_MOUSE	No assigned EC number	0.6094	0.9433	0.3776	yes	N/A
Q96JP0	FEM1C_HUMAN	No assigned EC number	0.6137	0.9433	0.3776	yes	N/A
Q9VFD5	FEM1A_DROME	No assigned EC number	0.6893	0.8947	0.3328	yes	N/A
A7MB89	FEM1C_BOVIN	No assigned EC number	0.6137	0.9433	0.3776	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	247
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-36
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-36
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-32
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-26
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-24
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-20
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-19
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-18
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-17
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-16
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-15
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-15
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-15
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-14
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-09
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-09
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	6e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-06
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-05
smart00248	30	smart00248, ANK, ankyrin repeats	6e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	8e-04
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.001
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.003
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.003
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.004
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (313), Expect = 3e-36
 Identities = 52/126 (41%), Positives = 75/126 (59%)

Query: 70  DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
           +    +G  PL  AA+ GHL +V+ L+E+GA VN+K     TPL  A  +GH  +VK L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
           E GAD    ++ G+T L +A   G+  +VK LL   AD+N +   G T LH  A+ G +E
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 190 ILKLLL 195
           ++KLLL
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  123 bits (311), Expect = 7e-36
 Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 1/126 (0%)

Query: 103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
           N++     TPL  A  +GH  VVK L+E+GAD    +  G T L +A   GH  IVK LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH 221
              AD+N +   GNT LH  A  G+++++KLLL HGA ++  D  G TPL  AA  GH  
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 222 IVEYLI 227
           +V+ L+
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  112 bits (283), Expect = 9e-32
 Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A  NGH E+V+ L++   ADV             +G  PL  AA  GHL IV+
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENG-ADVNAK--------DNDGRTPLHLAAKNGHLEIVK 57

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+E GA VN++ +  +TPL  A  +G+  VVK L++HGAD    ++ G T L +A   G
Sbjct: 58  LLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117

Query: 154 HYRIVKYLL 162
           H  +VK LL
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 96.6 bits (241), Expect = 6e-26
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA  G+L +V+ L+E GA VN       T L  A  +G+  +VK L+EHGAD    +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRK 171
           + G+T L +A   G+  IVK LL   AD+N K
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 93.5 bits (233), Expect = 1e-24
 Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
           L  A  +G+  +VK L+E GAD  + +    T L +A   G+  IVK LL   AD+N K 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 173 SKGNTALHDCAEAGSIEILKLLLSHGA 199
             GNTALH  A  G++EI+KLLL HGA
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 30/177 (16%)

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGH-----FGVVKYLVEHGADFEVSNRHGHTC 145
           +V+ L+++GA +NS T+ NSTPL       +       +VK L+E+GA+    + +G T 
Sbjct: 50  VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITP 109

Query: 146 LMIACYK--GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI--EILKLLLSHGARM 201
           L+ A  K    Y IV+YLL   A++N K+S G   LH   E+  I  +ILKLL+  G  +
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169

Query: 202 DV-----------------DSYGMTPLLAAAVVGHQHIVEYLIGL----NIVSRKEK 237
           +                  D YG TPL  A    +   V+YL+ L    N+V++   
Sbjct: 170 NAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGD 226

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.8 bits (208), Expect = 5e-21
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
           L +A   G+  +VK LL   AD+N   +  +TALH  A  G++EI+KLLL HGA ++  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G T L  AA  G+  IV+ L+
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 13/103 (12%)

Query: 38  LIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLV 96
           L +A +NG+ E+V+ L+ K    ++ +T               L  AA  G+L IV+ L+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD------------TALHLAARNGNLEIVKLLL 48

Query: 97  EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           EHGA VN+K +  +T L  A  +G+  +VK L+EHGAD  + +
Sbjct: 49  EHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 82.2 bits (202), Expect = 8e-19
 Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 9/126 (7%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH-----YRIVKYLLSLN 165
            PL +A   G   +VK L+  GAD    +  G T L +A   G+       + K LL   
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 166 ADM---NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH 221
           AD+   N +   GNT LH  A  G  +I++LLL  GA  +  +SYG+T L  AA  G   
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194

Query: 222 IVEYLI 227
           +V+ L+
Sbjct: 195 LVKLLL 200

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 79.9 bits (196), Expect = 5e-18
 Identities = 53/149 (35%), Positives = 75/149 (50%), Gaps = 8/149 (5%)

Query: 82  CAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG-----VVKYLVEHGADFE 136
            AA+ G   IV+ L+  GA VN+K     TPL  A  +G+       V K L+E GAD +
Sbjct: 79  SAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138

Query: 137 VSNRH---GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
           V+N     G+T L  A   G   IV+ LL   AD N ++S G TAL   A+ G IE++KL
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKL 198

Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQHI 222
           LL  G  + +  + +  +  A V     +
Sbjct: 199 LLDKGLHLSLLKFNLEGVANANVSKRNIL 227

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 80.4 bits (198), Expect = 2e-17
 Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 34/216 (15%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
           TPLI A R+G  +IVE  +K   AD+        +H   +   PL  A   G   I++ L
Sbjct: 37  TPLIDAIRSGDAKIVELFIKH-GADI--------NHINTKIPHPLLTAIKIGAHDIIKLL 87

Query: 96  V-----------------------EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
           +                       + G  VN K     T L  A   G    +K L E+G
Sbjct: 88  IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG 147

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           AD  + + +G   + IA     + I+K LL   A  N K + G + LH+ AE G    +K
Sbjct: 148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIK 207

Query: 193 LLLSHGARMDVD-SYGMTPLLAAAVVGHQHIVEYLI 227
           LL+ HG  +      G TP L  A++ ++  +E LI
Sbjct: 208 LLIDHGNHIMNKCKNGFTP-LHNAIIHNRSAIELLI 242

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 78.9 bits (195), Expect = 6e-17
 Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 32/171 (18%)

Query: 34  GATPL---IMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH-- 88
           G TPL   I    N    IVEYL         + GA +      +G   L     +    
Sbjct: 106 GITPLLYAISKKSN-SYSIVEYL--------LDNGANVNIK-NSDGENLLHLYLESNKID 155

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
           L I++ L++ G  +N+K R                 V YL+ +G    + + +G T L  
Sbjct: 156 LKILKLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDVYGFTPLHY 198

Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           A Y  +   VKYLL L A+ N  +  G+T LH      + EI KLLL++G 
Sbjct: 199 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 75.2 bits (184), Expect = 3e-16
 Identities = 42/96 (43%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS-----IEILKLLL 195
            G   L  A  KG  +IVK LL+  AD+N K + G+T LH  A  G+     IE+ KLLL
Sbjct: 72  DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL 131

Query: 196 SHGARMDV----DSYGMTPLLAAAVVGHQHIVEYLI 227
             GA +DV    D  G TPL  AA+ G   IVE L+
Sbjct: 132 EAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL 167

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 73.5 bits (180), Expect = 5e-15
 Identities = 48/177 (27%), Positives = 72/177 (40%), Gaps = 24/177 (13%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           E   PL  A  +G   IV+  ++HGA +N        PL  A   G   ++K L+++G D
Sbjct: 34  ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD 93

Query: 135 FEV-----------------------SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRK 171
             +                        +    T L  A  KG    +K L    AD+N +
Sbjct: 94  TSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE 153

Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
              G   +H   +    +I+KLLL  GA  +V D+ G +PL  AA  G    ++ LI
Sbjct: 154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 71.4 bits (174), Expect = 6e-15
 Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 19/168 (11%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP--- 90
           G  PL  A   G  +IV+ L+    ADV             +G  PL  AA  G+ P   
Sbjct: 73  GRLPLHSAASKGDDKIVKLLL-ASGADVNAK--------DADGDTPLHLAALNGNPPEGN 123

Query: 91  --IVQFLVEHGAKVNSKTRTNS---TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
             + + L+E GA ++     +    TPL  A  +G   +V+ L+E GAD    N +G T 
Sbjct: 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTA 183

Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
           L  A   G   +VK LL     ++    K N      A      IL L
Sbjct: 184 LDPAAKNGRIELVKLLLDKGLHLS--LLKFNLEGVANANVSKRNILNL 229

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 60/217 (27%), Positives = 92/217 (42%), Gaps = 29/217 (13%)

Query: 34  GATPLIMACRNGHKE-IVEYLVKECKADVEETGAVMFDHETVEGAPPL--WCAAAAGHLP 90
           G TPL +   N     +++ L+K   ADV     V        G  PL  + +    +  
Sbjct: 83  GFTPLHLYLYNATTLDVIKLLIK-AGADVNAKDKV--------GRTPLHVYLSGFNINPK 133

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACF----DGHFGVVKYLVEHGAD-FEVSNRHGHTC 145
           +++ L+  GA VN+      TPL  A      + +  +++ L++ GAD + V +R   + 
Sbjct: 134 VIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDR-FRSL 190

Query: 146 LMIAC--YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL--LLSHGARM 201
           L      +K   RIV+ L+    D       GNT LH  A   S +   +  LL  G  +
Sbjct: 191 LHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI 250

Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLIGL----NIVS 233
           +  + YG TPL  AAV  +      LI L    N VS
Sbjct: 251 NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVS 287

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 71.1 bits (174), Expect = 3e-14
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 4/125 (3%)

Query: 91  IVQFLVEHGAKVNSKTR-TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
           I + L+ +GA +N K R   +T L  A  +    + + L+ +GA+  + ++  ++ L  A
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALH-DCAEAGSIEILKLLLSHGARMDVDSY-- 206
               +  IV  LL   A  + +   GNT LH         +ILKLLL HG  ++  SY  
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYIL 268

Query: 207 GMTPL 211
           G+T L
Sbjct: 269 GLTAL 273

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 5/142 (3%)

Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G   L  A       + + L+ +GA VN   +TN++PL  A    +  +V  L+E+GA  
Sbjct: 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227

Query: 136 EVSNRHGHTCLMIAC-YKGHYRIVKYLLSLNADMNRKSS-KGNTALHDCAEAGSIEILKL 193
           +  ++ G+T L I+  Y   Y I+K LL    D+N KS   G TALH   +  S   LKL
Sbjct: 228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIK--SERKLKL 285

Query: 194 LLSHGARMD-VDSYGMTPLLAA 214
           LL +GA ++ ++SY +TPL +A
Sbjct: 286 LLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 62.7 bits (152), Expect = 2e-11
 Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
           T L  A + G  E ++ L +   ADV        + E   G  P+  A       I++ L
Sbjct: 126 TFLHYAIKKGDLESIKMLFEY-GADV--------NIEDDNGCYPIHIAIKHNFFDIIKLL 176

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           +E GA  N K     +PL  A   G +  +K L++HG       ++G T L  A    H 
Sbjct: 177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HN 234

Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAE-AGSIEILKLLLSHGARMDV-DSYGMTPL-L 212
           R    LL  NA +N +   G+T LH        I+I+ +LL H A + + D+ G  P+  
Sbjct: 235 RSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDT 294

Query: 213 AAAVVGHQHIVEYLIGLNIVSRKE 236
           A   +    +++ +I  N V  KE
Sbjct: 295 AFKYINKDPVIKDIIA-NAVLIKE 317

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 9e-11
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 9/70 (12%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
           T L +A RNG+ EIV+ L+ E  ADV        + +  +G   L  AA  G+L IV+ L
Sbjct: 30  TALHLAARNGNLEIVKLLL-EHGADV--------NAKDKDGNTALHLAARNGNLEIVKLL 80

Query: 96  VEHGAKVNSK 105
           +EHGA +N K
Sbjct: 81  LEHGADINLK 90

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 28/54 (51%), Positives = 33/54 (61%)

Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
           G T L  A   G   +VKYLL    D+NR    GNTALH  AE G++E+LKLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
             T L  A   G   +VKYL+E G D   ++  G+T L IA   G+  ++K LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 14/198 (7%)

Query: 34  GATPLIMACRNGH-KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           G TPL +  +NG+  E +  L+    ADV          + +   P    +    +  IV
Sbjct: 307 GETPLYLMAKNGYDTENIRTLIML-GADVNAA-------DRLYITPLHQASTLDRNKDIV 358

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
             L+E GA VN++   + TP+  A    +  ++  L+++GAD E  ++   T L  A   
Sbjct: 359 ITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG 418

Query: 153 GH-YRIVKYLLSLNADMNRKSSKGNTALH-DCAEAGSIEILKLLLSHGARMD-VDSYGMT 209
            + Y  VK L+   A++N K+   +T LH  C +   ++++++LL +GA ++ ++     
Sbjct: 419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY 478

Query: 210 PLLAAAVVGHQHIVEYLI 227
           PLL A  + +  IV  L+
Sbjct: 479 PLLIA--LEYHGIVNILL 494

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 58.1 bits (140), Expect = 7e-10
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 11/169 (6%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           +G  PL  A     L I++ L+  GA  +       +PL  A   G    ++ L++H A 
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN-TALHDCAEAGSIEILKL 193
            ++ +  G T L+IA  KG   I K LL   A+++     G   AL    E   I+I++L
Sbjct: 161 LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220

Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQH-IVEYLIGLNIVSRKEKIDAL 241
            +  GA    D   M       + G +  I++ +  +      E IDAL
Sbjct: 221 FIKRGA----DCNIMF-----MIEGEECTILDMICNMCTNLESEAIDAL 260

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 8/177 (4%)

Query: 72  ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
           E  +G  P+  A        ++ L++HGA  + K     + L  A  +G    V+ L++ 
Sbjct: 31  EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90

Query: 132 G--ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
           G  AD +V  + G T L +A       I+K L++  AD +  ++   + LH     G I+
Sbjct: 91  GKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149

Query: 190 ILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI--GLNI--VSRKEKIDAL 241
            ++LL+ H A +D+ D  G TPL+ A   G   I + L+  G NI    +   + AL
Sbjct: 150 GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAAL 206

Length = 413

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAAC--------FDGHFGVVKYLVEHGADFEVSNR 140
             IV+  +  GA VN      STPL   C        +     +VK L+E+GAD    N 
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPL---CTILSNIKDYKHMLDIVKILIENGADINKKNS 107

Query: 141 HGHT---CLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG---SIEILKLL 194
            G T   CL+   Y  +  I+ +++   AD       G T L    ++     IEI+KLL
Sbjct: 108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL 167

Query: 195 LSHG 198
           L  G
Sbjct: 168 LEKG 171

Length = 489

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 13/140 (9%)

Query: 34  GATPLIMACRNGHKEIVEYLVKE-CKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           G TPL +A   G+++ V  L+K  C   + +            G   LW A +A H  I 
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHIRD----------ANGNTALWNAISAKHHKIF 607

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           + L  H A + S        L  A        +K L++ G + +  +  G T L +A  +
Sbjct: 608 RILY-HFASI-SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAE 665

Query: 153 GHYRIVKYLLSLNADMNRKS 172
            H  +V+ L+   AD+++ +
Sbjct: 666 DHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 17/124 (13%)

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG---VVKYLVEHGADFEVSNRHGHTC 145
           L IV+ L+E+GA +N K     TPL     +G+     ++ +++E+GAD  + ++ G T 
Sbjct: 89  LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTM 148

Query: 146 LMIACYKGHY---RIVKYLLSLNADMNRKSSK-GNTALH-------DCAEAGSIEILKLL 194
           L +     H+    I+K LL    D+N  ++K     LH       D  +A   +ILKL 
Sbjct: 149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDA---DILKLF 205

Query: 195 LSHG 198
           + +G
Sbjct: 206 VDNG 209

Length = 489

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           G TALH  A +G +E++K LL  G  ++  D  G T L  AA  G+  +++ L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 84  AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
           AA+G     + L+  GA  N +     TPL  AC +GH  VV+ L+E GAD  + ++ G 
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 144 TCLMIACYKGHYRIVKYLLS 163
           T L +A   G   +V+ L  
Sbjct: 150 TPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
            L  AA +G L +V++L+E G  +N      +T L  A  +G+  V+K L+
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 128 LVEHG-ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
           L+EHG  D   ++ +G+T L +A   G   +V++LL    D+N + S G TAL 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 13/185 (7%)

Query: 46  HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK 105
           HKE+ +  V +   D         +H+    A  L   A+ G+  +++ L++     +  
Sbjct: 501 HKELHDLNVGDLLGDNGG------EHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIG 554

Query: 106 TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
                TPL  A   G+   V  L++H  +  + + +G+T L  A    H++I + L    
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFA 614

Query: 166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS---YGMTPLLAAAVVGHQHI 222
           +  +  +      L   A+   +  +K LL  G  ++VDS    G T L  A    H  +
Sbjct: 615 SISDPHA--AGDLLCTAAKRNDLTAMKELLKQG--LNVDSEDHQGATALQVAMAEDHVDM 670

Query: 223 VEYLI 227
           V  LI
Sbjct: 671 VRLLI 675

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
            + L+  GAD    +  G T L IAC  GH ++V+ LL   AD       G T L    E
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157

Query: 185 AGSIEILKLLLSH-------GARMDVDSYGMTP 210
            G  E+++LL  H       GA    DS+   P
Sbjct: 158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKP 190

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 95  LVEHG-AKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
           L+EHG   +N+     +TPL  A   G   +V++L++ G D  + +  G T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 33/182 (18%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
           PL  A  A +L +V+ L+  G  VN     + TPL   C + +   +K ++       V 
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVF 99

Query: 139 NRHGH-------------TCLMIACYKGHY------------------RIVKYLLSLNAD 167
                               ++   YK                      I K LLS  AD
Sbjct: 100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159

Query: 168 MNRKS-SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY 225
           +N K   KGNTALH   E     + +LLLS+GA +++ D    +PL  A    ++ IV  
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHI 219

Query: 226 LI 227
           L+
Sbjct: 220 LL 221

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRK 171
            G+T L +A   GH  +VK LL   AD+N +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           +G  PL  AA+ G+   V  L++H   V+ +    +T L  A    H  + + L    + 
Sbjct: 557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS- 615

Query: 135 FEVSNRH-GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
             +S+ H     L  A  +     +K LL    +++ +  +G TAL        +++++L
Sbjct: 616 --ISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL 673

Query: 194 LLSHGARMD 202
           L+ +GA +D
Sbjct: 674 LIMNGADVD 682

Length = 823

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 15/135 (11%)

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG------VVKYLVEHGADFEVSNRHGHT 144
           IV+ L+++GA VN K     TPL A   +          +VK L++ GAD  +   +G +
Sbjct: 52  IVKLLIDNGADVNYKGYIE-TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVS 110

Query: 145 CLMIACYKGHYR---IVKYLLSLNADMNR-KSSKGNTALHDCAEAGSI--EILKLLLSHG 198
            ++   Y  +     ++++LLS   ++N  K+S+G   LH   E+ S+  +++K+LLS G
Sbjct: 111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG 170

Query: 199 ARM--DVDSYGMTPL 211
             +      YG+TP+
Sbjct: 171 VNLFEKTSLYGLTPM 185

Length = 494

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTR 107
           +G  PL  AA  GHL +V+ L+E GA VN++ +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLR--AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
           IV+ L+  G    +     +TPL   A        +V  L+  G      NR+G T L  
Sbjct: 204 IVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHY 263

Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
           A    + R  + L++L AD+N  SS GNT L
Sbjct: 264 AAVFNNPRACRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 6e-05
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMN 169
            G T L +A   G+  +VK LL   AD+N
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 174 KGNTALHDCAEAGSIEILKLLLSHGARMDV 203
            GNT LH  A  G +E++KLLL  GA ++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 90  PIVQFLVEHGAKVNSKTRTNSTPL-RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
            +V  L+  G  +N++ R   TPL  AA F+      + L+  GAD    +  G+T L +
Sbjct: 238 SLVLPLLIAGISINARNRYGQTPLHYAAVFNNP-RACRRLIALGADINAVSSDGNTPLSL 296

Query: 149 ACYKGHYRIVKYLLSLN 165
                + R V+  L+ N
Sbjct: 297 MVRNNNGRAVRAALAKN 313

Length = 471

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 34/136 (25%)

Query: 121 HFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS-------- 172
           +  + + L+       V    G T L       +   V+ +L       RKS        
Sbjct: 65  NLELTELLLNLSCRGAV----GDTLLHAIS-LEYVDAVEAILLHLLAAFRKSGPLELAND 119

Query: 173 ------SKGNTALHDCAEAGSIEILKLLLSHGARM-------------DVDS--YGMTPL 211
                 + G TALH  A   + EI+KLLL  GA +              VDS  +G +PL
Sbjct: 120 QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPL 179

Query: 212 LAAAVVGHQHIVEYLI 227
            AAA +G   IV  L 
Sbjct: 180 NAAACLGSPSIVALLS 195

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
          T L  A  +G  E+V+YL+++   D+  T          +G   L  AA  G+L +++ L
Sbjct: 3  TALHKAAISGRLELVKYLLEK-GVDINRTDE--------DGNTALHIAAENGNLEVLKLL 53

Query: 96 V 96
          +
Sbjct: 54 L 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 35/191 (18%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE-- 136
           P+  AA  G+  +V  L+ +GA VN     + + L  A    +   +K ++++ ++    
Sbjct: 181 PIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKN 240

Query: 137 -------VSNRHGHTCLM----------IACYKG---HY--------RIVKYLLSLNADM 168
                  + N    T L+          I   K    H+        R+V  LL   AD+
Sbjct: 241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV 300

Query: 169 NRKSSKGNTALHDCAEAG-SIEILKLLLSHGARMD-VDSYGMTPLLAAAVVG-HQHIVEY 225
           N K+ KG T L+  A+ G   E ++ L+  GA ++  D   +TPL  A+ +  ++ IV  
Sbjct: 301 NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVIT 360

Query: 226 L--IGLNIVSR 234
           L  +G N+ +R
Sbjct: 361 LLELGANVNAR 371

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
          G TPL +A RNGH E+V+ L+ E  ADV
Sbjct: 2  GNTPLHLAARNGHLEVVKLLL-EAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 174 KGNTALHDCAEAGSIEILKLLLSHGARMDV 203
            G T LH  AE G++E++KLLL  GA ++ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA 214
             D+N     GNT LH  A+ G++E+++ LL  G  +++ DS G+T L  A
Sbjct: 6   PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMN 169
            G+T L +A   G+  +VK LL   AD+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 40/229 (17%)

Query: 36  TPLIMACRNGH------KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH- 88
           TPL    RN        K+IV+ L+K   AD+        + +T  G  P+ C     + 
Sbjct: 71  TPLCAVLRNREITSNKIKKIVKLLLKF-GADI--------NLKTFNGVSPIVCFIYNSNI 121

Query: 89  --LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDG---HFGVVKYLVEHGAD-FEVSNRHG 142
               +++FL+  G  VN    +    L     +       V+K L+  G + FE ++ +G
Sbjct: 122 NNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG 181

Query: 143 HTCLMIACYKGHY------RIVKYLLSLNADMNRKSSKGNTAL------HDCAEAGSIEI 190
            T + I  Y  +       +++KYL+    ++   ++   + L      +        ++
Sbjct: 182 LTPMNI--YLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKV 239

Query: 191 LKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGL----NIVSRK 235
           L  +L +      D  G  PLL +A V +     YL+ L      VS+ 
Sbjct: 240 LNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKD 288

Length = 494

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 20/136 (14%)

Query: 89  LPIVQFLVEHGAKVNSKTR-TNSTPLRAACFDGHF---------GVVKYLVEHGADFEVS 138
           + I++FL+E+GA VN KTR  N + L       H+          ++K L++ G+     
Sbjct: 66  VEILKFLIENGADVNFKTRDNNLSAL------HHYLSFNKNVEPEILKILIDSGSSITEE 119

Query: 139 NRHGHTCLMIACYKGHYRI--VKYLLSLNADMNRKSSKGNTALHDCAEAGS-IEILKLLL 195
           +  G   L +     + RI  +K L+        K    N  L+      S  +I   L 
Sbjct: 120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLT 179

Query: 196 SHGARM-DVDSYGMTP 210
           S G  + + +  G   
Sbjct: 180 SLGIDINETNKSGYNC 195

Length = 209

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
           L I + L+E GA VN+K     TP+  A   G+  +V  L+ +GAD  +      + L  
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYG 207
           A    +   +K ++   +++N    K + +L        +E   LL   G  ++ +D   
Sbjct: 218 AVDSKNIDTIKAIIDNRSNIN----KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK 273

Query: 208 MTPL 211
            TPL
Sbjct: 274 NTPL 277

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNR 140
           TPL  A  +GH  VVK L+E GAD    ++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 34 GATPLIMACRNGHKEIVEYLVKECKADV 61
          G T L +A RNG+ EIV+ L+ E  AD+
Sbjct: 61 GNTALHLAARNGNLEIVKLLL-EHGADI 87

Length = 91

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 27/128 (21%)

Query: 92  VQFLVEHGAKVNSKTRTNSTPLR-AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
           ++FL+  G  VN + R NS  L      D    +VK L+++GAD    N  G+    +  
Sbjct: 19  LEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADV---NYKGYIETPLCA 75

Query: 151 YKGHY--------RIVKYLLSLNADMNRKSSKG---------NTALHDCAEAGSIEILKL 193
              +         +IVK LL   AD+N K+  G         N+ +++C      ++L+ 
Sbjct: 76  VLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNC------DMLRF 129

Query: 194 LLSHGARM 201
           LLS G  +
Sbjct: 130 LLSKGINV 137

Length = 494

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
           +G  PL  A A GH+ +V+ L+E GA      +   TPL  A  +G   VV+ L  H
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 11/172 (6%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLR--AACFDGHFGVVKYLVEHG 132
           +G  PL  A+   +  IV  L+ HGA  N+  + + TPL   +   D     +  LV++G
Sbjct: 71  DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG 130

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH-----DCAEAGS 187
           A    S        ++AC     R+ K ++S+  +       G   +H     D  +A +
Sbjct: 131 AKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAST 190

Query: 188 IEILKLLLSHGARMDVDSYGMTPL--LAAAVVGHQHIVEYLIGLNIVSRKEK 237
           I  +  L    ++ D D  G TPL  + +  V +  I+  L+    V+++ K
Sbjct: 191 ISWMMKLGISPSKPDHD--GNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNK 240

Length = 446

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0508|consensus	615		100.0
KOG4412|consensus	226		100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0509|consensus	600		100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0509|consensus	600		100.0
PHA02798	489	ankyrin-like protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
KOG0510|consensus	929		99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG4177|consensus	1143		99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG0508|consensus	615		99.95
KOG4177|consensus	1143		99.95
PHA02917	661	ankyrin-like protein; Provisional	99.94
KOG0502|consensus	296		99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
KOG0507|consensus	854		99.92
KOG0514|consensus	452		99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0502|consensus	296		99.91
PHA02741	169	hypothetical protein; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0514|consensus	452		99.9
KOG0507|consensus	854		99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG0505|consensus	527		99.88
KOG3676|consensus	782		99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0505|consensus	527		99.87
KOG0512|consensus	228		99.86
KOG0512|consensus	228		99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
KOG0195|consensus	448		99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
KOG0195|consensus	448		99.79
KOG4369|consensus	2131		99.76
KOG4369|consensus	2131		99.75
KOG3676|consensus	782		99.74
KOG4214|consensus	117		99.71
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
KOG4214|consensus	117		99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
KOG0515|consensus	752		99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
KOG1710|consensus	396		99.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
KOG0515|consensus	752		99.45
KOG1710|consensus	396		99.45
KOG0782|consensus	1004		98.97
KOG0783|consensus	1267		98.95
PF13606	30	Ank_3: Ankyrin repeat	98.94
KOG0783|consensus	1267		98.88
KOG0506|consensus	622		98.88
KOG0782|consensus	1004		98.87
KOG0818|consensus	669		98.87
KOG0818|consensus	669		98.83
KOG0506|consensus	622		98.82
KOG0705|consensus	749		98.78
PF13606	30	Ank_3: Ankyrin repeat	98.78
KOG3609|consensus	822		98.77
KOG3609|consensus	822		98.71
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.71
KOG0522|consensus	560		98.69
KOG0522|consensus	560		98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
KOG0705|consensus	749		98.62
KOG2384|consensus	223		98.37
KOG0511|consensus	516		98.37
KOG0511|consensus	516		98.24
KOG0521|consensus	785		98.19
KOG0521|consensus	785		98.19
KOG0520|consensus	975		98.16
KOG2384|consensus	223		98.13
KOG0520|consensus	975		98.09
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.62
KOG2505|consensus	591		97.36
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.22
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.11
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.07
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.03
KOG2505|consensus	591		96.86
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.44
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.24
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.19
KOG0292|consensus	1202		90.3

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.1e-39  Score=243.87  Aligned_cols=202  Identities=21%  Similarity=0.205  Sum_probs=180.7

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..|.+|.||||+|+..|+.+++++|++.+ .++        +..  .+.||||+|+..|+.+++++|++.|++++.++..
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g-a~~--------n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~   93 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAG-ALK--------NLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDK   93 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCc-CCC--------cCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Confidence            46788999999999999999999999873 221        222  3689999999999999999999999999999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCC-CHHHHHHHcChHHHHHHHHhcCCCccccC-CCCCcHHHHHHHhC
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH-TCLMIACYKGHYRIVKYLLSLNADMNRKS-SKGNTALHDCAEAG  186 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~  186 (247)
                      |.||||+|+..|+.+++++|++++++++.++..|+ ||||+|+..|+.+++++|++++.+..  + ..|.||||+|+..|
T Consensus        94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g  171 (284)
T PHA02791         94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNG  171 (284)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--ccccCccHHHHHHHcC
Confidence            99999999999999999999999999998888874 89999999999999999999876432  2 24799999999999


Q ss_pred             CHHHHHHHHHcCCCCCC-CCCCCCH-HHHHHHcCCHHHHHHHHhcChhhhhhccchhhh
Q psy599          187 SIEILKLLLSHGARMDV-DSYGMTP-LLAAAVVGHQHIVEYLIGLNIVSRKEKIDALEL  243 (247)
Q Consensus       187 ~~~~i~~Ll~~g~~~~~-~~~g~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  243 (247)
                      +.+++++|+++|++++. +..|.|| ||+|+..|+.+++++|+++|++.+.+...++.+
T Consensus       172 ~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~~~l  230 (284)
T PHA02791        172 HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLENVLL  230 (284)
T ss_pred             CHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccCccC
Confidence            99999999999999987 7778877 999999999999999999999999998866443

>KOG4412|consensus

Probab=100.00  E-value=9.1e-40  Score=221.94  Aligned_cols=204  Identities=30%  Similarity=0.413  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHhhcHHHHHHHhhccC-CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHc
Q psy599            8 EYTHYQAFLEARTHEEIQMVTKFKF-GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA   86 (247)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~   86 (247)
                      ++..++++++...    +.+..++. +|.||||+||..|+.+++++|+++.        ...++.+|..|+||||+|+..
T Consensus        15 ~~~kveel~~s~~----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~--------nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen   15 EEFKVEELIQSDP----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQP--------NVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             hHHHHHHHHhcCh----hhhhccccccCCceeeeeeecCchhHHHHHHhcC--------CCCCCCccccCCchhhhhhhc
Confidence            3444555555444    45555555 9999999999999999999999753        333466688999999999999


Q ss_pred             CCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcC
Q psy599           87 GHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN  165 (247)
Q Consensus        87 ~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  165 (247)
                      |+.++++.|+.+ |++++..+..|.|+||+|+.+|..+++++|+++|+.++.+|..|.||||.|+..|+.+++++|+..|
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            999999999988 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Q psy599          166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVE  224 (247)
Q Consensus       166 ~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~  224 (247)
                      +.++..|..|+||||.|...|..++...|+++|+++.. ++.| ||+..|+..=...+.+
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~l~~alk~  221 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNELLEALKE  221 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987 7777 9987776543333333

>KOG0508|consensus

Probab=100.00  E-value=1.2e-39  Score=251.08  Aligned_cols=238  Identities=61%  Similarity=0.995  Sum_probs=220.5

Q ss_pred             HHHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCC
Q psy599            9 YTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH   88 (247)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~   88 (247)
                      ......++....++.+..+.....+|.|||.+||.+|+.+++++|+++++..++..+...++.....|-+||..|+..|+
T Consensus        17 l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGH   96 (615)
T KOG0508|consen   17 LQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGH   96 (615)
T ss_pred             HHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCc
Confidence            34455666666666666667778889999999999999999999999999999999888898889999999999999999


Q ss_pred             HHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCc
Q psy599           89 LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM  168 (247)
Q Consensus        89 ~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  168 (247)
                      +++|+.|+++|+++|.....+.|||..||.-|+.+++++|++++++++..++.|.|.|++||.+|+.+++++|++.|+++
T Consensus        97 l~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv  176 (615)
T KOG0508|consen   97 LEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV  176 (615)
T ss_pred             HHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhccCC
Q psy599          169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS  247 (247)
Q Consensus       169 ~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  247 (247)
                      +.++..|.|+||.|+..|+.+++++|+++|+.+.++..|.|||..|+..|+.+++.+|++ -..++..+++.+++++|+
T Consensus       177 n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~-~~~sr~~riealEllGat  254 (615)
T KOG0508|consen  177 NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ-CETSRESRIEALELLGAT  254 (615)
T ss_pred             chhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc-CCcchhhHHHHHHHhccc
Confidence            999999999999999999999999999999999998889999999999999999999998 344566778889988874

>KOG4412|consensus

Probab=100.00  E-value=5.9e-38  Score=213.16  Aligned_cols=201  Identities=31%  Similarity=0.473  Sum_probs=181.8

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHH-HhCCCCCccCCCCCh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLV-EHGAKVNSKTRTNST  111 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~  111 (247)
                      .+.++.+.++......-++.+++..+       .......|.+|+||||+|+..|+.+++.+|+ +.+..++.+|..|++
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~-------kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWt   74 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDP-------KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWT   74 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcCh-------hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCc
Confidence            35677888888888877888876522       1223444558999999999999999999999 457889999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          112 PLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      |||.|+..|+.++|+.|+.+ +++++..++.|.|+||+|+..|..+++.+|++.|+.++.+|..|.||||-|+..|+.++
T Consensus        75 Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkv  154 (226)
T KOG4412|consen   75 PLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKV  154 (226)
T ss_pred             hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhh
Confidence            99999999999999999998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccch
Q psy599          191 LKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDA  240 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  240 (247)
                      +++|+..|+.++. ++.|+||||.|...++.+...+|.+.|++...++.+.
T Consensus       155 ie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  155 IEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             HHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC
Confidence            9999999999997 9999999999999999999999999999887777665

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-36  Score=249.76  Aligned_cols=228  Identities=22%  Similarity=0.281  Sum_probs=191.5

Q ss_pred             hhHHHHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHH
Q psy599            6 LDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA   85 (247)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~   85 (247)
                      .+.+..+..+++..... .+.....+..+.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+.
T Consensus        10 ~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~---------gadvn~~d~~g~TpLh~A~~   79 (477)
T PHA02878         10 TDNYETILKYIEYIDHT-ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR---------GHNVNQPDHRDLTPLHIICK   79 (477)
T ss_pred             hccHHHHHHHHHHHhhh-hhhcCcccccCcchHHHHHHcCCHHHHHHHHHC---------CCCCCCCCCCCCCHHHHHHH
Confidence            44445566666662222 223344456788999999999999999999987         23345667789999999988


Q ss_pred             cCCHH----------------------------------------------------------------HHHHHHHhCCC
Q psy599           86 AGHLP----------------------------------------------------------------IVQFLVEHGAK  101 (247)
Q Consensus        86 ~~~~~----------------------------------------------------------------~~~~Ll~~~~~  101 (247)
                      .|+.+                                                                ++++|++.|++
T Consensus        80 ~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad  159 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD  159 (477)
T ss_pred             CccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC
Confidence            65543                                                                56666677888


Q ss_pred             CCccCCC-CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHH
Q psy599          102 VNSKTRT-NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH  180 (247)
Q Consensus       102 ~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  180 (247)
                      ++.++.. |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++.|++++.+|..|.||||
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh  239 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLH  239 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            8888888 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh-CCHHHHHHHHHcCCCCCC-C-CCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          181 DCAEA-GSIEILKLLLSHGARMDV-D-SYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       181 ~a~~~-~~~~~i~~Ll~~g~~~~~-~-~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +|+.. ++.+++++|+++|++++. + ..|.||||+|  .++.+++++|+++|++.+....++.+.++
T Consensus       240 ~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        240 ISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            99976 689999999999999986 3 4799999999  57899999999999999988888777664

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.7e-36  Score=242.89  Aligned_cols=198  Identities=23%  Similarity=0.294  Sum_probs=179.6

Q ss_pred             ccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-ccCCC
Q psy599           30 FKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVN-SKTRT  108 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~  108 (247)
                      .+..|.||||.|+..|+.+++++|++.+.         ..+..+..+.||||.|+..|+.+++++|++.|...+ ..+..
T Consensus        31 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga---------~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  101 (413)
T PHA02875         31 EIYDGISPIKLAMKFRDSEAIKLLMKHGA---------IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD  101 (413)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCC---------CccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCC
Confidence            35579999999999999999999998732         223445678999999999999999999999987654 45667


Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus       102 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~  181 (413)
T PHA02875        102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI  181 (413)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCC-CCCC-CCHHHHHHHcCCHHHHHHHHhcChhhhhh
Q psy599          189 EILKLLLSHGARMDV-DSYG-MTPLLAAAVVGHQHIVEYLIGLNIVSRKE  236 (247)
Q Consensus       189 ~~i~~Ll~~g~~~~~-~~~g-~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  236 (247)
                      +++++|+++|++++. +..| .||+++|+..++.+++++|+++|++.+..
T Consensus       182 eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        182 AICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            999999999999986 5555 58999999999999999999999998653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-35  Score=241.70  Aligned_cols=207  Identities=30%  Similarity=0.395  Sum_probs=134.9

Q ss_pred             ccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC---------
Q psy599           30 FKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA---------  100 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~---------  100 (247)
                      .+..|.||||.|+..|+.+++++|++.+ .+        .+..+..|.||||.|+..|+.+++++|++.|+         
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~G-a~--------~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~  101 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFIKHG-AD--------INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPC  101 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC--------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhcc
Confidence            4556788888888888888888888762 22        23334455666666666666666655555443         


Q ss_pred             --------------CCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Q psy599          101 --------------KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNA  166 (247)
Q Consensus       101 --------------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  166 (247)
                                    +++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus       102 ~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~  181 (434)
T PHA02874        102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA  181 (434)
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC
Confidence                          234445556666666666666666666666666666666666666666666666666666666666


Q ss_pred             CccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCC-------------------------------CCC-CCCCCCHHHHH
Q psy599          167 DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR-------------------------------MDV-DSYGMTPLLAA  214 (247)
Q Consensus       167 ~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~-------------------------------~~~-~~~g~t~l~~A  214 (247)
                      +++..+..|.||||+|+..|+.+++++|+++|++                               ++. +..|.||||+|
T Consensus       182 ~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A  261 (434)
T PHA02874        182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHA  261 (434)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            6666666666666666666666666666666554                               333 55688888888


Q ss_pred             HHcC-CHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          215 AVVG-HQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       215 ~~~~-~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +..+ +.+++++|++.|++...+..++.+.++
T Consensus       262 ~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~  293 (434)
T PHA02874        262 INPPCDIDIIDILLYHKADISIKDNKGENPID  293 (434)
T ss_pred             HhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            8765 788999999999888877777666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.9e-35  Score=236.70  Aligned_cols=198  Identities=24%  Similarity=0.287  Sum_probs=181.6

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhH
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPL  113 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  113 (247)
                      .+++|+.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.|++++..+..+.+||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~---------g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L   72 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI---------GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESEL   72 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC---------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHH
Confidence            46899999999999999999987         222345566899999999999999999999999999999888999999


Q ss_pred             HHHHhcCChHHHHHHHHCCCCcc-cCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHH
Q psy599          114 RAACFDGHFGVVKYLVEHGADFE-VSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK  192 (247)
Q Consensus       114 ~~a~~~~~~~~~~~Ll~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~  192 (247)
                      |.|+..|+.+++++|++.+...+ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++
T Consensus        73 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         73 HDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999987653 45667999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccch
Q psy599          193 LLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDA  240 (247)
Q Consensus       193 ~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  240 (247)
                      +|+++|++++. +..|.||||+|+..|+.+++++|++.|++.......+
T Consensus       153 ~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~  201 (413)
T PHA02875        153 LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNG  201 (413)
T ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Confidence            99999999987 8899999999999999999999999999988766554

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.7e-35  Score=241.85  Aligned_cols=168  Identities=31%  Similarity=0.465  Sum_probs=81.8

Q ss_pred             CcCCCCHHHHHH--HcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcC--ChHHHHHHHHCCCCcccCCCCCCCHHHH
Q psy599           73 TVEGAPPLWCAA--AAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDG--HFGVVKYLVEHGADFEVSNRHGHTCLMI  148 (247)
Q Consensus        73 ~~~~~t~l~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  148 (247)
                      +..|.||||+|+  ..|+.+++++|++.|++++..+..|.+|||+|+..+  +.+++++|+++|++++..+..|.||||.
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~  182 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHI  182 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence            334445555555  444555555555555444444444455555555444  4455555555554444444444455555


Q ss_pred             HHHcChHHHHHHHHhcCCCccccCCCC------CcHHHHHHHhCC--HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCC
Q psy599          149 ACYKGHYRIVKYLLSLNADMNRKSSKG------NTALHDCAEAGS--IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH  219 (247)
Q Consensus       149 a~~~~~~~~~~~Ll~~~~~~~~~~~~~------~t~l~~a~~~~~--~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~  219 (247)
                      |+..|+.+++++|+++|++++..+..+      .||||.|+..|+  .+++++|+++|++++. +..|.||||+|+..++
T Consensus       183 A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~  262 (480)
T PHA03100        183 AVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN  262 (480)
T ss_pred             HHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            554444444444444444444444444      444444444444  4444444444444443 4445555555555555


Q ss_pred             HHHHHHHHhcChhhhhhccch
Q psy599          220 QHIVEYLIGLNIVSRKEKIDA  240 (247)
Q Consensus       220 ~~~~~~Ll~~g~~~~~~~~~~  240 (247)
                      .+++++|++.|++.+....++
T Consensus       263 ~~iv~~Ll~~gad~n~~d~~g  283 (480)
T PHA03100        263 PEFVKYLLDLGANPNLVNKYG  283 (480)
T ss_pred             HHHHHHHHHcCCCCCccCCCC
Confidence            555555555555444444433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.6e-35  Score=241.27  Aligned_cols=212  Identities=26%  Similarity=0.398  Sum_probs=195.0

Q ss_pred             HHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHH-----HHHcCCHHHHHHHHHhC
Q psy599           25 QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC-----AAAAGHLPIVQFLVEHG   99 (247)
Q Consensus        25 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~-----A~~~~~~~~~~~Ll~~~   99 (247)
                      ......+..+.||||.|+..|+.+++++|++++         ...+..+..+.||+|+     |+..++.+++++|++.|
T Consensus        26 ~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g---------~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g   96 (480)
T PHA03100         26 DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNG---------ADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG   96 (480)
T ss_pred             ccchhhhcccchhhhhhhccCCHHHHHHHHHcC---------CCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCC
Confidence            445556778999999999999999999999872         2234556678999999     99999999999999999


Q ss_pred             CCCCccCCCCChhHHHHH--hcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC--hHHHHHHHHhcCCCccccCCCC
Q psy599          100 AKVNSKTRTNSTPLRAAC--FDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG--HYRIVKYLLSLNADMNRKSSKG  175 (247)
Q Consensus       100 ~~~~~~~~~~~~~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~  175 (247)
                      ++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||.|+..+  +.+++++|+++|++++.++..|
T Consensus        97 a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g  176 (480)
T PHA03100         97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYG  176 (480)
T ss_pred             CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCC
Confidence            999999999999999999  999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCC------CCHHHHHHHcCC--HHHHHHHHhcChhhhhhccchhhhcc
Q psy599          176 NTALHDCAEAGSIEILKLLLSHGARMDV-DSYG------MTPLLAAAVVGH--QHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       176 ~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g------~t~l~~A~~~~~--~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      .||||+|+..|+.+++++|+++|++++. +..|      .||+|.|+..++  .+++++|++.|++.+.+...+-++++
T Consensus       177 ~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~  255 (480)
T PHA03100        177 YTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLH  255 (480)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            9999999999999999999999999986 6667      899999999999  99999999999998888777766654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=231.51  Aligned_cols=202  Identities=27%  Similarity=0.372  Sum_probs=182.6

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHH
Q psy599           36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRA  115 (247)
Q Consensus        36 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  115 (247)
                      ..|+.|+..|+.+.++.|++..+..        .+..+..|.||||.|+..|+.+++++|++.|++++..+..|.+||+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~--------~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~   74 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNC--------INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLT   74 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCC--------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            3689999999999999999863332        34456678999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHCCC-----------------------CcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccC
Q psy599          116 ACFDGHFGVVKYLVEHGA-----------------------DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS  172 (247)
Q Consensus       116 a~~~~~~~~~~~Ll~~~~-----------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  172 (247)
                      |+..|+.+++++|+++|+                       +++.++..|.||||+|+..|+.+++++|+++|++++.++
T Consensus        75 A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d  154 (434)
T PHA02874         75 AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED  154 (434)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcC
Confidence            999999999999987764                       456678889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          173 SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       173 ~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      ..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|++.|++...+..++.++++
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~  228 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLH  228 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH
Confidence            9999999999999999999999999999987 888999999999999999999999999988777666665554

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1e-33  Score=216.17  Aligned_cols=184  Identities=20%  Similarity=0.183  Sum_probs=165.2

Q ss_pred             cCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChH
Q psy599           44 NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG  123 (247)
Q Consensus        44 ~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  123 (247)
                      .++.+++++|+++..           ...|..|.||||+|+..|+.+++++|++.|++++..+  +.||||+|+..|+.+
T Consensus         9 ~~~~~~~~~Lis~~a-----------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~e   75 (284)
T PHA02791          9 WKSKQLKSFLSSKDA-----------FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTK   75 (284)
T ss_pred             cCHHHHHHHHHhCCC-----------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHH
Confidence            577899999998621           2457789999999999999999999999999888764  689999999999999


Q ss_pred             HHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCC-cHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy599          124 VVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN-TALHDCAEAGSIEILKLLLSHGARMD  202 (247)
Q Consensus       124 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~i~~Ll~~g~~~~  202 (247)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|+++++...
T Consensus        76 iV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~  155 (284)
T PHA02791         76 IVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  155 (284)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999999999999998888885 89999999999999999999986543


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccch
Q psy599          203 VDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDA  240 (247)
Q Consensus       203 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  240 (247)
                      -...|.||||+|+..|+.+++++|+++|++.+.+....
T Consensus       156 d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g  193 (284)
T PHA02791        156 DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL  193 (284)
T ss_pred             ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCC
Confidence            22358999999999999999999999999988775543

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=232.84  Aligned_cols=206  Identities=25%  Similarity=0.303  Sum_probs=120.7

Q ss_pred             cCCCchHHHHHHhcC-cHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHH--HcCCHHHHHHHHHhCCCCCccCC
Q psy599           31 KFGGATPLIMACRNG-HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA--AAGHLPIVQFLVEHGAKVNSKTR  107 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~~~~Ll~~~~~~~~~~~  107 (247)
                      +..|.||||+|+..| +.+++++|++.         +..++..+..|.||||+|+  ..++.+++++|++.|++++.++.
T Consensus        80 ~~~g~TpLh~A~~~~~~~~iv~lLl~~---------ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~  150 (471)
T PHA03095         80 ERCGFTPLHLYLYNATTLDVIKLLIKA---------GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL  150 (471)
T ss_pred             CCCCCCHHHHHHHcCCcHHHHHHHHHc---------CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC
Confidence            334555555555555 35555555554         2222334445555555555  23345555555555555555555


Q ss_pred             CCChhHHHHHhcC--ChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc--ChHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy599          108 TNSTPLRAACFDG--HFGVVKYLVEHGADFEVSNRHGHTCLMIACYK--GHYRIVKYLLSLNADMNRKSSKGNTALHDCA  183 (247)
Q Consensus       108 ~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  183 (247)
                      .|.||+|+|+..+  +.+++++|+++|++++..+..|.||+|.++..  ++.++++.|++.|++++.+|..|.||||+|+
T Consensus       151 ~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        151 YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            5555555555443  34555555555555544455555555555543  4455566666666666666666666666666


Q ss_pred             HhCCH--HHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          184 EAGSI--EILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       184 ~~~~~--~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      ..|..  .+++.|++.|++++. +..|.||||+|+..|+.+++++|++.|++++....++.+.++
T Consensus       231 ~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~  295 (471)
T PHA03095        231 TGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLS  295 (471)
T ss_pred             hcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            66543  466666777777765 667777777777777777777777777777766666655543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.6e-33  Score=225.54  Aligned_cols=193  Identities=21%  Similarity=0.350  Sum_probs=126.4

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC--CHHHHHHHHHhCCCCCc-cCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG--HLPIVQFLVEHGAKVNS-KTR  107 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~~~~Ll~~~~~~~~-~~~  107 (247)
                      +..|.||||+|+..|+.+++++|+++         +...+..|..|.||||+|+..+  ..+++++|+++|++++. .+.
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv~lLL~~---------GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~  139 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIVAMLLTH---------GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE  139 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC---------cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC
Confidence            55667777777777777777777765         2223455666777777666554  35666777777776663 456


Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh--HHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH--YRIVKYLLSLNADMNRKSSKGNTALHDCAEA  185 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  185 (247)
                      .|.|||+ |+..++.+++++|++.|++++.++..|.||||.|+..++  .+++++|+++|++++.+|..|.||||+|+..
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            6666765 444566677777777777777777777777776665433  5667777777777777777777777777766


Q ss_pred             C--CHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCC-HHHHHHHHhcChhhh
Q psy599          186 G--SIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH-QHIVEYLIGLNIVSR  234 (247)
Q Consensus       186 ~--~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~-~~~~~~Ll~~g~~~~  234 (247)
                      +  +.+++++|++ |++++. +..|.||||+|+..++ .+++++|++.|.+..
T Consensus       219 ~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        219 TVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             CCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence            4  5667776664 666665 6667777777777666 467777777665543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.8e-33  Score=226.68  Aligned_cols=210  Identities=20%  Similarity=0.249  Sum_probs=182.2

Q ss_pred             HHHhhccCC-CchHHHHHHh--cCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy599           25 QMVTKFKFG-GATPLIMACR--NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK  101 (247)
Q Consensus        25 ~~~~~~~~~-g~t~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~  101 (247)
                      .++...... +.++||.++.  .++.+++++|+++         +...+..+..|.||||+|+..|+.+++++|+++|++
T Consensus        27 ~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~---------Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd   97 (446)
T PHA02946         27 NMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHR---------GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD   97 (446)
T ss_pred             HHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHC---------cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            334344444 4689998774  4578999999987         333466778999999999999999999999999999


Q ss_pred             CCccCCCCChhHHHHHhcC--ChHHHHHHHHCCCCccc-CCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcH
Q psy599          102 VNSKTRTNSTPLRAACFDG--HFGVVKYLVEHGADFEV-SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTA  178 (247)
Q Consensus       102 ~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  178 (247)
                      ++.++..|.||||+|+..+  ..+++++|+++|++++. .+..|.|||| |+..++.+++++|++.|++++.+|..|+||
T Consensus        98 in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~  176 (446)
T PHA02946         98 PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNH  176 (446)
T ss_pred             CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCH
Confidence            9999999999999998765  47999999999999985 6889999997 667789999999999999999999999999


Q ss_pred             HHHHHHhCC--HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcC--CHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          179 LHDCAEAGS--IEILKLLLSHGARMDV-DSYGMTPLLAAAVVG--HQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       179 l~~a~~~~~--~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      ||.|+..++  .+++++|+++|++++. +..|.||||+|+..+  +.+++++|++ |++.+.+..++.++++
T Consensus       177 Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh  247 (446)
T PHA02946        177 IHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLT  247 (446)
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence            999988654  6899999999999997 889999999999986  8899999995 8999988888877765

>KOG0509|consensus

Probab=100.00  E-value=1.1e-33  Score=226.09  Aligned_cols=198  Identities=33%  Similarity=0.425  Sum_probs=180.6

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC-CCCChhH
Q psy599           35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT-RTNSTPL  113 (247)
Q Consensus        35 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l  113 (247)
                      ...+..|++.|+++.++.+++..        +...+..|.+|.|+||+|+.+++.+++++|+++|+++|... ..+.|||
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~--------g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPL  116 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE--------GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPL  116 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc--------CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcc
Confidence            45689999999999999999862        33345667799999999999999999999999999999988 6689999


Q ss_pred             HHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHH
Q psy599          114 RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL  193 (247)
Q Consensus       114 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~  193 (247)
                      |+|+++|+..++++|+++|++++.+|..|.+++|.|++.++.-.+-+++..+.+++.+|.+|+||||+|+.+|....++.
T Consensus       117 HWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  117 HWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             hHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             HHHcCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccch
Q psy599          194 LLSHGARMDV--DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDA  240 (247)
Q Consensus       194 Ll~~g~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  240 (247)
                      |++.|+.+..  +..|.||||+|+..|+..+++++++.|++......++
T Consensus       197 LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g  245 (600)
T KOG0509|consen  197 LLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNG  245 (600)
T ss_pred             HHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCC
Confidence            9999999986  5889999999999999999997777767666655553

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-32  Score=200.51  Aligned_cols=175  Identities=19%  Similarity=0.229  Sum_probs=157.0

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC--CHHHHHHHHHhCCCCCccC-CC
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG--HLPIVQFLVEHGAKVNSKT-RT  108 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~~~~Ll~~~~~~~~~~-~~  108 (247)
                      ..+.|||+.|+..|+.+.++.|++.            .+..+..|.||||+|+..+  +.+++++|+++|++++.++ ..
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~------------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~   86 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF------------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDN   86 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh------------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCC
Confidence            4578999999999999999999864            1345678999999999864  8999999999999999987 58


Q ss_pred             CChhHHHHHhc---CChHHHHHHHHCCCCcccCCCCCCCHHHHHHH--cChHHHHHHHHhcCCCccccCCCCCcHHHH-H
Q psy599          109 NSTPLRAACFD---GHFGVVKYLVEHGADFEVSNRHGHTCLMIACY--KGHYRIVKYLLSLNADMNRKSSKGNTALHD-C  182 (247)
Q Consensus       109 ~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~-a  182 (247)
                      |.||||+|+..   ++.+++++|+++|++++.++..|.||||.|+.  .++.+++++|++.|++++.+|..|.||||. |
T Consensus        87 g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a  166 (209)
T PHA02859         87 NLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI  166 (209)
T ss_pred             CCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH
Confidence            99999998764   47999999999999999999999999999876  467999999999999999999999999995 5


Q ss_pred             HHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcC
Q psy599          183 AEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVG  218 (247)
Q Consensus       183 ~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~  218 (247)
                      +..++.+++++|+++|++++. +..|.||+++|...+
T Consensus       167 ~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        167 LFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            677899999999999999997 889999999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=225.95  Aligned_cols=197  Identities=21%  Similarity=0.309  Sum_probs=171.1

Q ss_pred             ccCCCchHHHHHHhc-----CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC---CHHHHHHHHHhCCC
Q psy599           30 FKFGGATPLIMACRN-----GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG---HLPIVQFLVEHGAK  101 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~-----g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~---~~~~~~~Ll~~~~~  101 (247)
                      .+..|.||||.|+.+     ++.+++++|++.         +...+..+..|.||||+|+..+   +.+++++|+++|++
T Consensus        67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~---------GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad  137 (489)
T PHA02798         67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIEN---------GADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD  137 (489)
T ss_pred             CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC---------CCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC
Confidence            367899999998864     678999999987         3345667788999999999875   78999999999999


Q ss_pred             CCccCCCCChhHHHHHhcCC---hHHHHHHHHCCCCcccCC-CCCCCHHHHHHHc----ChHHHHHHHHhcCCC------
Q psy599          102 VNSKTRTNSTPLRAACFDGH---FGVVKYLVEHGADFEVSN-RHGHTCLMIACYK----GHYRIVKYLLSLNAD------  167 (247)
Q Consensus       102 ~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~----~~~~~~~~Ll~~~~~------  167 (247)
                      ++.++..|.||||+|+..++   .+++++|+++|++++..+ ..+.||+|.++..    ++.+++++|+++|++      
T Consensus       138 vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        138 TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            99999999999999999987   899999999999998875 4688999988764    468888888877654      


Q ss_pred             ---------------------------------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHH
Q psy599          168 ---------------------------------MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLA  213 (247)
Q Consensus       168 ---------------------------------~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~  213 (247)
                                                       ++.+|..|.||||+|+..|+.+++++|+++|++++. +..|.|||++
T Consensus       218 ~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~  297 (489)
T PHA02798        218 SHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFT  297 (489)
T ss_pred             cccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHH
Confidence                                             344667799999999999999999999999999997 8899999999


Q ss_pred             HHHcCCHHHHHHHHhcChhhhh
Q psy599          214 AAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       214 A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                      |+..++.++++.|++.|.+...
T Consensus       298 A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        298 AFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             HHHcCcHHHHHHHHccCCCHHH
Confidence            9999999999999999987763

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.4e-32  Score=223.94  Aligned_cols=208  Identities=23%  Similarity=0.270  Sum_probs=188.3

Q ss_pred             hccCCCchHHHHHHhcC---cHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC-CHHHHHHHHHhCCCCCc
Q psy599           29 KFKFGGATPLIMACRNG---HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG-HLPIVQFLVEHGAKVNS  104 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~  104 (247)
                      ..+..|.||||.|+..+   +.+++++|++.         +...+..+..|.||||+|+..| ..+++++|++.|++++.
T Consensus        42 ~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~---------Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~  112 (471)
T PHA03095         42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA---------GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA  112 (471)
T ss_pred             cCCCCCCCHHHHHHHhcCCChHHHHHHHHHC---------CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCC
Confidence            34667999999999999   99999999987         3344666779999999999999 59999999999999999


Q ss_pred             cCCCCChhHHHHH--hcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC--hHHHHHHHHhcCCCccccCCCCCcHHH
Q psy599          105 KTRTNSTPLRAAC--FDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG--HYRIVKYLLSLNADMNRKSSKGNTALH  180 (247)
Q Consensus       105 ~~~~~~~~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~  180 (247)
                      ++..|.||||+|+  ..++.+++++|+++|++++..+..|.||+|.|+..+  +.+++++|+++|++++..+..|.||||
T Consensus       113 ~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh  192 (471)
T PHA03095        113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH  192 (471)
T ss_pred             CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            9999999999999  456789999999999999999999999999998866  689999999999999888999999999


Q ss_pred             HHHHh--CCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCH--HHHHHHHhcChhhhhhccchhhhcc
Q psy599          181 DCAEA--GSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQ--HIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       181 ~a~~~--~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~--~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +++..  +..++++.|+++|++++. +..|.||||+|+..++.  .+++.|++.|++.+..+.++.++++
T Consensus       193 ~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh  262 (471)
T PHA03095        193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLH  262 (471)
T ss_pred             HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            99875  688999999999999997 89999999999999974  6889999999999998888777765

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.5e-32  Score=223.58  Aligned_cols=202  Identities=29%  Similarity=0.339  Sum_probs=173.2

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccc---------------------------------------------
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEE---------------------------------------------   63 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~---------------------------------------------   63 (247)
                      ..+..|.||||+||..|+.+++++|++........                                             
T Consensus        65 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  144 (477)
T PHA02878         65 QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDI  144 (477)
T ss_pred             CCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhh
Confidence            34678999999999999998888888753211000                                             


Q ss_pred             ----------cccccccccCcC-CCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCC
Q psy599           64 ----------TGAVMFDHETVE-GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG  132 (247)
Q Consensus        64 ----------~~~~~~~~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  132 (247)
                                ..+...+..+.. |.||||+|+..|+.+++++|++.|++++.++..|.||||.|+..++.+++++|+++|
T Consensus       145 ~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  224 (477)
T PHA02878        145 IEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG  224 (477)
T ss_pred             HHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence                      001123334555 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCC
Q psy599          133 ADFEVSNRHGHTCLMIACYK-GHYRIVKYLLSLNADMNRKSS-KGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMT  209 (247)
Q Consensus       133 ~~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t  209 (247)
                      ++++.++..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||.|  .++.+++++|+++|++++. +..|.|
T Consensus       225 a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~T  302 (477)
T PHA02878        225 ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLT  302 (477)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            99999999999999999975 789999999999999998875 799999999  5688999999999999997 899999


Q ss_pred             HHHHHHHcC-CHHHHHHHHhcChh
Q psy599          210 PLLAAAVVG-HQHIVEYLIGLNIV  232 (247)
Q Consensus       210 ~l~~A~~~~-~~~~~~~Ll~~g~~  232 (247)
                      ||++|+..+ ..+++++|+..++.
T Consensus       303 pL~~A~~~~~~~~~~~~li~~~~~  326 (477)
T PHA02878        303 PLSSAVKQYLCINIGRILISNICL  326 (477)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHH
Confidence            999999754 57888888876543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5e-32  Score=233.11  Aligned_cols=207  Identities=25%  Similarity=0.258  Sum_probs=182.6

Q ss_pred             ccCCCchHHHHHHhcCcH-HHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC-CHHHHHHHHHhCCCCCccCC
Q psy599           30 FKFGGATPLIMACRNGHK-EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG-HLPIVQFLVEHGAKVNSKTR  107 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~  107 (247)
                      .+..|.||||+|+..|+. +++++|++.         +...+..+..|.||||+|+..| +.++++.|+..|++++.++.
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~---------gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~  339 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLER---------GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADR  339 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHC---------CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCccc
Confidence            356799999999999996 578888876         2334566778999999999998 69999999999999999999


Q ss_pred             CCChhHHHHHhc-CChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          108 TNSTPLRAACFD-GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       108 ~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      .|.||||+|+.. +..++++.|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+
T Consensus       340 ~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~  419 (682)
T PHA02876        340 LYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGT  419 (682)
T ss_pred             CCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcC
Confidence            999999999886 4688999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C-HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcC-CHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          187 S-IEILKLLLSHGARMDV-DSYGMTPLLAAAVVG-HQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       187 ~-~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      + ..++++|+++|++++. +..|+||||+|+..+ +.+++++|++.|++.+....++-+.++
T Consensus       420 ~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLL  481 (682)
T ss_pred             CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            5 5678999999999987 889999999999877 689999999999999888777665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-31  Score=227.76  Aligned_cols=215  Identities=27%  Similarity=0.246  Sum_probs=154.5

Q ss_pred             ccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccc--------------------------------------------
Q psy599           30 FKFGGATPLIMACRNGHKEIVEYLVKECKADVEETG--------------------------------------------   65 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~--------------------------------------------   65 (247)
                      .+..|.||||.|+..|+.+++++|++.+ .+++...                                            
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~G-ad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~  252 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLSYG-ADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNED  252 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCC
Confidence            3667999999999999999999999873 2221100                                            


Q ss_pred             ----------cccccccCcCCCCHHHHHHHcCCH-HHHHHHHHhCCCCCccCCCCChhHHHHHhcC-ChHHHHHHHHCCC
Q psy599           66 ----------AVMFDHETVEGAPPLWCAAAAGHL-PIVQFLVEHGAKVNSKTRTNSTPLRAACFDG-HFGVVKYLVEHGA  133 (247)
Q Consensus        66 ----------~~~~~~~~~~~~t~l~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~  133 (247)
                                +...+..+..|.||||+|+..++. ++++.|++.|++++.++..|.||||+|+..| ..++++.|+..|+
T Consensus       253 ~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~ga  332 (682)
T PHA02876        253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA  332 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCC
Confidence                      001223344577777777777765 4677777777777777777777777777777 4777777777777


Q ss_pred             CcccCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHH
Q psy599          134 DFEVSNRHGHTCLMIACYK-GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL  211 (247)
Q Consensus       134 ~~~~~~~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l  211 (247)
                      +++..+..|.||||+|+.. +..++++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++. +..|.|||
T Consensus       333 din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~L  412 (682)
T PHA02876        333 DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTAL  412 (682)
T ss_pred             CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchH
Confidence            7777777777777777764 456777777777777777777777777777777777777777777777775 66677777


Q ss_pred             HHHHHcCC-HHHHHHHHhcChhhhhhccchhhhcc
Q psy599          212 LAAAVVGH-QHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       212 ~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      |+|+..++ ..++++|++.|++.+.+..++.++++
T Consensus       413 h~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh  447 (682)
T PHA02876        413 HFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH  447 (682)
T ss_pred             HHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHH
Confidence            77776554 45677777777777777777666654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.5e-31  Score=225.22  Aligned_cols=194  Identities=22%  Similarity=0.317  Sum_probs=168.0

Q ss_pred             cCCCchHHHHHHh--cCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCC--HHHHHHHHHhCCCCCccC
Q psy599           31 KFGGATPLIMACR--NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH--LPIVQFLVEHGAKVNSKT  106 (247)
Q Consensus        31 ~~~g~t~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~--~~~~~~Ll~~~~~~~~~~  106 (247)
                      +..|.||||.|+.  +++.+++++|++.         +...+..+..|.||||+|+..|+  .+++++|++.|++++.++
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~---------GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD  244 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNN---------GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKC  244 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHc---------CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCC
Confidence            5679999999865  4678999999987         33456677889999999999995  589999999999999999


Q ss_pred             CCCChhHHHH-------------------------------------HhcCChHHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy599          107 RTNSTPLRAA-------------------------------------CFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA  149 (247)
Q Consensus       107 ~~~~~~l~~a-------------------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  149 (247)
                      ..|.||||+|                                     +..|+.+++++|+++|++++.++..|+||||+|
T Consensus       245 ~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~A  324 (764)
T PHA02716        245 VNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQY  324 (764)
T ss_pred             CCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHH
Confidence            9999999875                                     345778899999999999999999999999997


Q ss_pred             HH--cChHHHHHHHHhcCCCccccCCCCCcHHHHHHH--------------hCCHHHHHHHHHcCCCCCC-CCCCCCHHH
Q psy599          150 CY--KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE--------------AGSIEILKLLLSHGARMDV-DSYGMTPLL  212 (247)
Q Consensus       150 ~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--------------~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~  212 (247)
                      +.  .++.+++++|++.|++++.+|..|+||||+|+.              .++.+++++|+++|++++. +..|+||||
T Consensus       325 aa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        325 ILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             HHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            64  467899999999999999999999999999875              3688999999999999997 899999999


Q ss_pred             H----HHHcCCHHHHHHHHhcChhh
Q psy599          213 A----AAVVGHQHIVEYLIGLNIVS  233 (247)
Q Consensus       213 ~----A~~~~~~~~~~~Ll~~g~~~  233 (247)
                      .    |...++.+++++|++.|+..
T Consensus       405 ~y~~~a~n~~~~dIvklLis~~~~~  429 (764)
T PHA02716        405 SYICTAQNYMYYDIIDCLISDKVLN  429 (764)
T ss_pred             HHHHHHHhcChHHHHHHHHhCcchh
Confidence            4    23356799999999988654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.5e-31  Score=223.02  Aligned_cols=226  Identities=21%  Similarity=0.263  Sum_probs=188.8

Q ss_pred             HHHHHHhhcHHHHHHHhhc-cCCCchHHHHH-----HhcCcHHHHHHHHHhcccCcccccccccccc-CcCCCCHHHHHH
Q psy599           12 YQAFLEARTHEEIQMVTKF-KFGGATPLIMA-----CRNGHKEIVEYLVKECKADVEETGAVMFDHE-TVEGAPPLWCAA   84 (247)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A-----~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~t~l~~A~   84 (247)
                      |.++++..+.+..+-.... +..+.++++..     ...++.+++++|++.+..+        .+.. +..|.||||+|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~AD--------IN~~~d~~G~TpLH~A~  185 (764)
T PHA02716        114 YKQIIKDNKSKTANHVFDIPNNGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVN--------LNYVCKKTGYGILHAYL  185 (764)
T ss_pred             HHHHHHcCCchhhhhhhcCCCcccchHHHHHHhhhcccCCCHHHHHHHHHCCCCC--------cccccCCCCCcHHHHHH
Confidence            6677777776665543333 34455555444     3458899999999873233        3444 678999999986


Q ss_pred             Hc--CCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCC--hHHHHHHHHCCCCcccCCCCCCCHHHHH-----------
Q psy599           85 AA--GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH--FGVVKYLVEHGADFEVSNRHGHTCLMIA-----------  149 (247)
Q Consensus        85 ~~--~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~t~l~~a-----------  149 (247)
                      ..  ++.+++++|+++|++++.++..|.||||+|++.|+  .+++++|+++|++++.++..|.||||.|           
T Consensus       186 ~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EI  265 (764)
T PHA02716        186 GNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEI  265 (764)
T ss_pred             HhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHH
Confidence            54  67899999999999999999999999999999995  4899999999999999999999999975           


Q ss_pred             --------------------------HHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHH--hCCHHHHHHHHHcCCCC
Q psy599          150 --------------------------CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE--AGSIEILKLLLSHGARM  201 (247)
Q Consensus       150 --------------------------~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~i~~Ll~~g~~~  201 (247)
                                                +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.+++++|+++|+++
T Consensus       266 vkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI  345 (764)
T PHA02716        266 TNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL  345 (764)
T ss_pred             HHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC
Confidence                                      34577899999999999999999999999999875  45789999999999999


Q ss_pred             CC-CCCCCCHHHHHHH--------------cCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          202 DV-DSYGMTPLLAAAV--------------VGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       202 ~~-~~~g~t~l~~A~~--------------~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +. +..|+||||+|+.              .++.+++++|++.|++...+...+.++++
T Consensus       346 N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        346 NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            87 8899999999875              36899999999999999999988888876

>KOG0510|consensus

Probab=100.00  E-value=6.2e-32  Score=220.70  Aligned_cols=211  Identities=27%  Similarity=0.357  Sum_probs=173.9

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCC---------
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK---------  101 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~---------  101 (247)
                      +..|.+|+|.|+.+|..++.+.++.+.+..    ....++..+..+.+|||.|+..|+.++++.+++.|..         
T Consensus       184 ~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~----r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~  259 (929)
T KOG0510|consen  184 DIDGNFPIHEAARSGSKECMEIFLPEHGYE----RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAM  259 (929)
T ss_pred             cCcCCchHHHHHHhcchhhhhhhhccccch----hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHH
Confidence            344555555555555555555555421111    1223455567889999999999999999999987643         


Q ss_pred             ------CCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHh-cCC-CccccCC
Q psy599          102 ------VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLS-LNA-DMNRKSS  173 (247)
Q Consensus       102 ------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~-~~~~~~~  173 (247)
                            ++..|.+|.||||+|++.|+.++++.|+.+|++++.++.++.||+|.|+.+|+++.++.|++ .+. ..+..|.
T Consensus       260 ~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~  339 (929)
T KOG0510|consen  260 QQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDL  339 (929)
T ss_pred             HHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccc
Confidence                  34567889999999999999999999999999999999999999999999999999999998 443 4578889


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          174 KGNTALHDCAEAGSIEILKLLLSHGARMDV----DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       174 ~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~----~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      .|.||||.|++.|...+++.|+++|+....    +..|.||||.|+.+|+..+++.|+.+|++...++..+.+.++
T Consensus       340 ~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  340 HGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             cCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            999999999999999999999999998873    888999999999999999999999999999887776666553

>KOG0509|consensus

Probab=100.00  E-value=2.9e-32  Score=217.91  Aligned_cols=186  Identities=36%  Similarity=0.526  Sum_probs=168.7

Q ss_pred             HHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Q psy599           24 IQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVN  103 (247)
Q Consensus        24 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~  103 (247)
                      .+.+...|.+|.|+||.|+.+++++++++|+++ +.+++..++       .-+.||||+|+++|+..++..|+++|++++
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG-------~l~stPLHWAar~G~~~vv~lLlqhGAdpt  139 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGG-------VLGSTPLHWAARNGHISVVDLLLQHGADPT  139 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCC-------CCCCCcchHHHHcCcHHHHHHHHHcCCCCc
Confidence            444555688999999999999999999999998 333332222       468899999999999999999999999999


Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccC-CCCCcHHHHH
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS-SKGNTALHDC  182 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a  182 (247)
                      .+|..|.+++|.|+..++.-.+-+|+.++++++.+|.+|+||+|.|+.+|....++.|++.++.+...| ..|.||||+|
T Consensus       140 ~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa  219 (600)
T KOG0509|consen  140 LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWA  219 (600)
T ss_pred             eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHH
Confidence            999999999999999999999999999999999999999999999999999888999999999998887 8999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHc
Q psy599          183 AEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVV  217 (247)
Q Consensus       183 ~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~  217 (247)
                      +..|+..++..+++.|++.+. +..|+||+.+|...
T Consensus       220 ~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  220 VVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999999977788888887 78899999999877

>PHA02798 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.1e-30  Score=216.70  Aligned_cols=204  Identities=24%  Similarity=0.330  Sum_probs=177.2

Q ss_pred             CCchHHHHHHhc--CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHc-----CCHHHHHHHHHhCCCCCcc
Q psy599           33 GGATPLIMACRN--GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA-----GHLPIVQFLVEHGAKVNSK  105 (247)
Q Consensus        33 ~g~t~L~~A~~~--g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~-----~~~~~~~~Ll~~~~~~~~~  105 (247)
                      .|.|+++.+...  ++.+++++|+++         +..++..+..|.||||.|+..     +..+++++|+++|++++.+
T Consensus        35 ~~~~~~~~yl~~~~~~~~iv~~Ll~~---------Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~  105 (489)
T PHA02798         35 NEYSIFQKYLQRDSPSTDIVKLFINL---------GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK  105 (489)
T ss_pred             ccchHHHHHHhCCCCCHHHHHHHHHC---------CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC
Confidence            466777655544  579999999987         344566778999999998864     6689999999999999999


Q ss_pred             CCCCChhHHHHHhcC---ChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh---HHHHHHHHhcCCCccccC-CCCCcH
Q psy599          106 TRTNSTPLRAACFDG---HFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH---YRIVKYLLSLNADMNRKS-SKGNTA  178 (247)
Q Consensus       106 ~~~~~~~l~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~~~~t~  178 (247)
                      +..|.||||+|+..+   +.+++++|+++|++++..+..|.||||.|+..++   .+++++|++.|++++..+ ..|.||
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~  185 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDT  185 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcH
Confidence            999999999999875   6899999999999999999999999999999887   999999999999998874 578999


Q ss_pred             HHHHHHh----CCHHHHHHHHHcCCCCCC----------------------------------------CCCCCCHHHHH
Q psy599          179 LHDCAEA----GSIEILKLLLSHGARMDV----------------------------------------DSYGMTPLLAA  214 (247)
Q Consensus       179 l~~a~~~----~~~~~i~~Ll~~g~~~~~----------------------------------------~~~g~t~l~~A  214 (247)
                      ||.++..    ++.+++++|+++|++++.                                        +..|.||||+|
T Consensus       186 Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A  265 (489)
T PHA02798        186 LHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYS  265 (489)
T ss_pred             HHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHH
Confidence            9998765    378999999998875432                                        45699999999


Q ss_pred             HHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          215 AVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       215 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +..++.+++++|++.|++.+....++.+.++
T Consensus       266 ~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        266 VSHNNRKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             HHcCcHHHHHHHHHcCCcccccCCCCCcHHH
Confidence            9999999999999999999998888877665

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=7.7e-31  Score=217.87  Aligned_cols=204  Identities=24%  Similarity=0.368  Sum_probs=132.5

Q ss_pred             CCCchHHHHHHhc--CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC------CHHHHHHHHHhCCCCC
Q psy599           32 FGGATPLIMACRN--GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG------HLPIVQFLVEHGAKVN  103 (247)
Q Consensus        32 ~~g~t~L~~A~~~--g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~------~~~~~~~Ll~~~~~~~  103 (247)
                      ..|.|||+.++..  ++.+++++|++. +.+++        ..+ .+.||||.|+..+      +.+++++|+++|++++
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn--------~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin  102 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVN--------YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADIN  102 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCcc--------CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC
Confidence            3578888665544  368899999986 33332        222 3467777666543      3466777777777777


Q ss_pred             ccCCCCChhHHHHHhc---CChHHHHHHHHCCCCc-ccCCCCCCCHHHHHHHc--ChHHHHHHHHhcCCCccc-cCCCCC
Q psy599          104 SKTRTNSTPLRAACFD---GHFGVVKYLVEHGADF-EVSNRHGHTCLMIACYK--GHYRIVKYLLSLNADMNR-KSSKGN  176 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~-~~~~~~  176 (247)
                      .++..|.||||.|+..   ++.+++++|+++|+++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..|.
T Consensus       103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~  182 (494)
T PHA02989        103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGL  182 (494)
T ss_pred             CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCC
Confidence            7777777777766544   4567777777777777 56666777777766543  456777777777777665 456667


Q ss_pred             cHHHHHHHhC----CHHHHHHHHHcCCCCCC---------------------------------------CCCCCCHHHH
Q psy599          177 TALHDCAEAG----SIEILKLLLSHGARMDV---------------------------------------DSYGMTPLLA  213 (247)
Q Consensus       177 t~l~~a~~~~----~~~~i~~Ll~~g~~~~~---------------------------------------~~~g~t~l~~  213 (247)
                      ||||.|+..+    +.+++++|+++|++++.                                       +..|.||||+
T Consensus       183 tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~  262 (494)
T PHA02989        183 TPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLI  262 (494)
T ss_pred             ChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence            7777665543    66677777766665432                                       2336677777


Q ss_pred             HHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          214 AAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       214 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      |+..++.+++++|++.|++.+.+..++.+.++
T Consensus       263 Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~  294 (494)
T PHA02989        263 SAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLT  294 (494)
T ss_pred             HHHhcCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            77777777777777777777666666655543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.7e-30  Score=215.75  Aligned_cols=192  Identities=19%  Similarity=0.324  Sum_probs=135.7

Q ss_pred             cCCCchHHHHHHhc---CcHHHHHHHHHhcccCccccccccc-cccCcCCCCHHHHHHHc--CCHHHHHHHHHhCCCCCc
Q psy599           31 KFGGATPLIMACRN---GHKEIVEYLVKECKADVEETGAVMF-DHETVEGAPPLWCAAAA--GHLPIVQFLVEHGAKVNS  104 (247)
Q Consensus        31 ~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~t~l~~A~~~--~~~~~~~~Ll~~~~~~~~  104 (247)
                      +..|.||||.|+..   |+.+++++|+++         +... +..+..|.||||+|+..  ++.+++++|+++|++++.
T Consensus       105 d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~---------Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989        105 TFNGVSPIVCFIYNSNINNCDMLRFLLSK---------GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             CCCCCcHHHHHHHhcccCcHHHHHHHHHC---------CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence            44566666666544   456666666665         1222 33445666666666543  456666666666666665


Q ss_pred             -cCCCCChhHHHHHhcC----ChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc------ChHHHHHHHHhcCCCccccCC
Q psy599          105 -KTRTNSTPLRAACFDG----HFGVVKYLVEHGADFEVSNRHGHTCLMIACYK------GHYRIVKYLLSLNADMNRKSS  173 (247)
Q Consensus       105 -~~~~~~~~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~------~~~~~~~~Ll~~~~~~~~~~~  173 (247)
                       .+..|.||+|.|++.+    +.+++++|+++|++++..+..+.|++|.++..      +..+++++|+. +++++.+|.
T Consensus       176 ~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~  254 (494)
T PHA02989        176 KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDK  254 (494)
T ss_pred             cccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCC
Confidence             4556666666665543    56666666666666666666666666655443      23455555443 467777888


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          174 KGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       174 ~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      .|+||||+|+..|+.+++++|+++|++++. +..|.|||++|+..++.+++++|++.+..
T Consensus       255 ~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        255 KGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            899999999999999999999999999997 89999999999999999999999987743

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=212.59  Aligned_cols=196  Identities=20%  Similarity=0.148  Sum_probs=162.6

Q ss_pred             HhhccCCCchHHHHHHhc---CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHH----HHHHHHHhC
Q psy599           27 VTKFKFGGATPLIMACRN---GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP----IVQFLVEHG   99 (247)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~----~~~~Ll~~~   99 (247)
                      ....|..|.||||.|+..   |+.+++++|++.         +......+..|.||||+|+..|+.+    +++.|++.+
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~---------ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~   95 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS---------GTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEAT   95 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC---------CCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhcc
Confidence            356688999999998665   889999999987         2233566788999999999999854    567787765


Q ss_pred             CCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHH--HcChHHHHHHHHhcCCCccccCCC---
Q psy599          100 AKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC--YKGHYRIVKYLLSLNADMNRKSSK---  174 (247)
Q Consensus       100 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~---  174 (247)
                      ...+..+.  ..++++|+..++.+++++|+++|++++.++..|.||||.++  ..++.+++++|+++|++++.++..   
T Consensus        96 ~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~  173 (661)
T PHA02917         96 GYSNINDF--NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEY  173 (661)
T ss_pred             CCCCCCCc--chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccc
Confidence            44555442  36778899999999999999999999999999999999654  468999999999999999765432   


Q ss_pred             C-----------CcHHHHHHH-----------hCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCH--HHHHHHHhc
Q psy599          175 G-----------NTALHDCAE-----------AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQ--HIVEYLIGL  229 (247)
Q Consensus       175 ~-----------~t~l~~a~~-----------~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~--~~~~~Ll~~  229 (247)
                      |           .||||+|+.           .++.+++++|+++|++++. +..|.||||+|+..|+.  +++++|++ 
T Consensus       174 g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-  252 (661)
T PHA02917        174 GYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-  252 (661)
T ss_pred             ccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-
Confidence            3           599999986           4588999999999999997 89999999999999985  79999986 


Q ss_pred             Chhhh
Q psy599          230 NIVSR  234 (247)
Q Consensus       230 g~~~~  234 (247)
                      |++..
T Consensus       253 g~d~~  257 (661)
T PHA02917        253 GIDNT  257 (661)
T ss_pred             CCccc
Confidence            76543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.6e-29  Score=198.41  Aligned_cols=198  Identities=21%  Similarity=0.163  Sum_probs=168.0

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHH--cCCHHHHHHHHHhCCCCCccCCCCChh
Q psy599           35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA--AGHLPIVQFLVEHGAKVNSKTRTNSTP  112 (247)
Q Consensus        35 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~  112 (247)
                      .+.-.+|+..+..+++++|+.++.. +.-. ...+ .++..++|+||+++.  .|+.+++++|+++|++++..  .+.||
T Consensus        78 ~~~~~~~~~~~~k~~~~~l~s~~~~-~~~~-~~~~-~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~  152 (437)
T PHA02795         78 YIVDRLFAYITYKDIISALVSKNYM-EDIF-SIII-KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNA  152 (437)
T ss_pred             hhhhhHHhhcchHHHHHHHHhcccc-cchh-hhhh-hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCH
Confidence            3344499999999999999998322 1100 0011 356679999999999  89999999999999999874  45789


Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcccCC------CCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFEVSN------RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~~~~------~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      +|.|+..++.+++++|+++|++.....      ..+.+++|.|...+..+++++|+++|++++.++..|.||||+|+..|
T Consensus       153 lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g  232 (437)
T PHA02795        153 YFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAG  232 (437)
T ss_pred             HHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcC
Confidence            999999999999999999997432221      34778999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCC--------HHHHHHHHhcChhhhhhc
Q psy599          187 SIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH--------QHIVEYLIGLNIVSRKEK  237 (247)
Q Consensus       187 ~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~--------~~~~~~Ll~~g~~~~~~~  237 (247)
                      +.+++++|+++|++++. +..|.||||+|+..|+        .+++++|+++|++.....
T Consensus       233 ~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        233 YIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            99999999999999997 8899999999999984        699999999998766544

>KOG0510|consensus

Probab=99.97  E-value=5.1e-30  Score=209.58  Aligned_cols=213  Identities=25%  Similarity=0.323  Sum_probs=122.3

Q ss_pred             HHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Q psy599           24 IQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVN  103 (247)
Q Consensus        24 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~  103 (247)
                      .......|..|.+|||.|++....+.+++|++.         +......+..+.+|+|+|+..++.++++.|++.|++++
T Consensus        78 ~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~---------gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvn  148 (929)
T KOG0510|consen   78 LAISYAKDSADNTPLHAAVEYNQGDKIQVLLSY---------GADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVN  148 (929)
T ss_pred             hhhhhhhhcccCchhHHHhhcchHHHHHHHHhc---------CCCCChhhhhccCchhhccccchHHHHHHHHHhcCCcc
Confidence            334444466677777777777777777777765         22223344455566666666666666666666666666


Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHh-----cCCCccccCCCCCcH
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLS-----LNADMNRKSSKGNTA  178 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-----~~~~~~~~~~~~~t~  178 (247)
                      ..++.+.||||.|+..+..+..+.|++.++++...+.+|.+|+|.|++.|..++.+..+.     ++..++..+..+.||
T Consensus       149 l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~p  228 (929)
T KOG0510|consen  149 LEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATP  228 (929)
T ss_pred             ccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcc
Confidence            666666666666666666665555566666665555555555666666665555555554     334455555555555


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCC----------------CCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhh
Q psy599          179 LHDCAEAGSIEILKLLLSHGARMD----------------VDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALE  242 (247)
Q Consensus       179 l~~a~~~~~~~~i~~Ll~~g~~~~----------------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  242 (247)
                      ||.|+..|+.++++.+++.|....                .+..|.||||+|++.|+.+.++.|+..|+++..+..|+-+
T Consensus       229 LhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s  308 (929)
T KOG0510|consen  229 LHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEES  308 (929)
T ss_pred             hhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCC
Confidence            555555555555555555554431                1334555555555555555555555555555555555555


Q ss_pred             hcc
Q psy599          243 LLG  245 (247)
Q Consensus       243 ~~~  245 (247)
                      ++|
T Consensus       309 pLH  311 (929)
T KOG0510|consen  309 PLH  311 (929)
T ss_pred             chH
Confidence            443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.3e-29  Score=182.77  Aligned_cols=168  Identities=18%  Similarity=0.245  Sum_probs=149.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcC--ChHHHHHHHHCCCCcccCC-CCCCCHHHHHHH
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDG--HFGVVKYLVEHGADFEVSN-RHGHTCLMIACY  151 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~  151 (247)
                      .+.+||++|+..|+.++++.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||.|+.
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            578999999999999999999975   5667888999999999864  8999999999999999987 489999999876


Q ss_pred             c---ChHHHHHHHHhcCCCccccCCCCCcHHHHHHH--hCCHHHHHHHHHcCCCCCC-CCCCCCHHHH-HHHcCCHHHHH
Q psy599          152 K---GHYRIVKYLLSLNADMNRKSSKGNTALHDCAE--AGSIEILKLLLSHGARMDV-DSYGMTPLLA-AAVVGHQHIVE  224 (247)
Q Consensus       152 ~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~--~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~-A~~~~~~~~~~  224 (247)
                      .   ++.+++++|+++|++++.+|..|.||||.|+.  .++.+++++|+++|++++. +..|.||||. |+..++.++++
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~  176 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFD  176 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHH
Confidence            4   47999999999999999999999999999886  4689999999999999987 8899999995 56778999999


Q ss_pred             HHHhcChhhhhhccchhhhcc
Q psy599          225 YLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       225 ~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +|++.|++...+...+.+.++
T Consensus       177 ~Ll~~Gadi~~~d~~g~tpl~  197 (209)
T PHA02859        177 FLTSLGIDINETNKSGYNCYD  197 (209)
T ss_pred             HHHHcCCCCCCCCCCCCCHHH
Confidence            999999999888777766543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=1.1e-26  Score=202.83  Aligned_cols=172  Identities=22%  Similarity=0.309  Sum_probs=100.7

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhH
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPL  113 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  113 (247)
                      +.++|+.||..|+.++++.|++.         +...+..|..|.||||+|+..|+.++++.|+++|++++.++..|.|||
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~---------G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL  595 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKA---------KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL  595 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHC---------CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            34556666666666666666654         222344555566666666666666666666666666666666666666


Q ss_pred             HHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHH
Q psy599          114 RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL  193 (247)
Q Consensus       114 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~  193 (247)
                      |+|+..|+.+++++|++.+...+  ...+.++||.|+..|+.++++.|+++|++++.+|..|.||||.|+..|+.+++++
T Consensus       596 ~~A~~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        596 WNAISAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHHHhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            66666666666666665543322  2234456666666666666666666666666666666666666666666666666


Q ss_pred             HHHcCCCCCC-CCCC-CCHHHHHHH
Q psy599          194 LLSHGARMDV-DSYG-MTPLLAAAV  216 (247)
Q Consensus       194 Ll~~g~~~~~-~~~g-~t~l~~A~~  216 (247)
                      |+++|++++. +..| .+|..++..
T Consensus       674 Ll~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        674 LIMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            6666666654 4444 556555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=8.6e-27  Score=203.54  Aligned_cols=211  Identities=20%  Similarity=0.265  Sum_probs=174.9

Q ss_pred             HHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCH
Q psy599           10 THYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHL   89 (247)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~   89 (247)
                      ..+..+++........++...       +.......+.++-..+.+....           ..+..+.++|+.|+..|+.
T Consensus       477 ~~f~~ll~~~p~d~~~i~~~~-------l~~~~~l~~l~v~~ll~~~~~~-----------~~~~~~~~~L~~Aa~~g~~  538 (823)
T PLN03192        477 STLIEAMQTRQEDNVVILKNF-------LQHHKELHDLNVGDLLGDNGGE-----------HDDPNMASNLLTVASTGNA  538 (823)
T ss_pred             HHHHHHHHHhhHHHHHHHHHH-------HHHhhhhccccHHHHHhhcccc-----------cCCccchhHHHHHHHcCCH
Confidence            455555665555555544432       3333344555555555543111           1223467899999999999


Q ss_pred             HHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCcc
Q psy599           90 PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN  169 (247)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  169 (247)
                      ++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|+..+...+
T Consensus       539 ~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~  618 (823)
T PLN03192        539 ALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISD  618 (823)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998776554


Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccch
Q psy599          170 RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDA  240 (247)
Q Consensus       170 ~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  240 (247)
                      .  ..+.++||.|+..|+.++++.|+++|++++. +..|.||||+|+..|+.+++++|++.|++.+....++
T Consensus       619 ~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        619 P--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             c--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence            3  3477999999999999999999999999997 8999999999999999999999999999988776554

>KOG4177|consensus

Probab=99.95  E-value=1.8e-27  Score=204.85  Aligned_cols=193  Identities=36%  Similarity=0.497  Sum_probs=166.7

Q ss_pred             cCCCchHHHHHHhcC-cHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCC
Q psy599           31 KFGGATPLIMACRNG-HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTN  109 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  109 (247)
                      +..|+|++|+|+..| ..+....+++. +.+        .+.....|.|+||.|+..|+.++++.+++.++..+.....+
T Consensus       437 ~~lG~T~lhvaa~~g~~~~~~~~l~~~-g~~--------~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~  507 (1143)
T KOG4177|consen  437 AKLGYTPLHVAAKKGRYLQIARLLLQY-GAD--------PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKG  507 (1143)
T ss_pred             hhcCCChhhhhhhcccHhhhhhhHhhc-CCC--------cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhc
Confidence            445788888888888 44444444433 333        34455678888888888888888888888887777777788


Q ss_pred             ChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHH
Q psy599          110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE  189 (247)
Q Consensus       110 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  189 (247)
                      .+++|.+...+...+++.++++|++++.++..+.||||.|+..|+.++|++|+++|++++.++..|+||||.|+..|..+
T Consensus       508 l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  508 LTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             cchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH
Confidence            88888888888888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          190 ILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       190 ~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      ++++|+++|++++. +..|.|||++|++.|+.++++.++..|.+
T Consensus       588 i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  588 IAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            99999999999997 89999999999999999999999999998

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.1e-26  Score=190.00  Aligned_cols=192  Identities=19%  Similarity=0.184  Sum_probs=157.9

Q ss_pred             hhccCCCchHHHHHHhcC---cHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC--CHHHHHHHHHhCCC-
Q psy599           28 TKFKFGGATPLIMACRNG---HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG--HLPIVQFLVEHGAK-  101 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~~~~Ll~~~~~-  101 (247)
                      ...+..|.||||+|+..|   +.+++++|+++         +...+.+|..|.||||+|+..+  +.+++++|++.|+. 
T Consensus        35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~---------GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~  105 (672)
T PHA02730         35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR---------GVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNA  105 (672)
T ss_pred             hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC---------CCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCC
Confidence            466788999999999997   59999999987         4444677889999999999976  79999999999664 


Q ss_pred             -CCccCCCCChhHHHHHh--cCChHHHHHHHH-CCCCcccCCC-----CCCCHHHHHHHcChHHHHHHHHhcCCCcc---
Q psy599          102 -VNSKTRTNSTPLRAACF--DGHFGVVKYLVE-HGADFEVSNR-----HGHTCLMIACYKGHYRIVKYLLSLNADMN---  169 (247)
Q Consensus       102 -~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~-~~~~~~~~~~-----~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~---  169 (247)
                       ++..+..+.+|++.++.  .++.+++++|+. .+.+++....     .|.+|++++...+.++++++|+++|++++   
T Consensus       106 ~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~  185 (672)
T PHA02730        106 SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYV  185 (672)
T ss_pred             CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccc
Confidence             46666557888888888  788999999996 6677765532     78999999999999999999999999984   


Q ss_pred             ----ccCCCCCcH-HHHH------HHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHH--HHHcCCHHHHHHHHh
Q psy599          170 ----RKSSKGNTA-LHDC------AEAGSIEILKLLLSHGARMDV-DSYGMTPLLA--AAVVGHQHIVEYLIG  228 (247)
Q Consensus       170 ----~~~~~~~t~-l~~a------~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~--A~~~~~~~~~~~Ll~  228 (247)
                          ..+....+| ||++      ...+..+++++|+++|++++. +..|.||||+  |...++.|++++|++
T Consensus       186 ~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        186 FRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence                233344444 4423      345689999999999999996 8899999985  555677999999998

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=183.06  Aligned_cols=189  Identities=19%  Similarity=0.216  Sum_probs=157.0

Q ss_pred             ccCCCchHHHHHHh--cCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-ccC
Q psy599           30 FKFGGATPLIMACR--NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVN-SKT  106 (247)
Q Consensus        30 ~~~~g~t~L~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~  106 (247)
                      .+..++|+||+|+.  .|+.+++++|+++ +.+++        .  ..+.||+|.|+..++.+++++|+++|++.. ..+
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADIn--------~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~  180 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVIY--------K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVK  180 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHC-CCCCC--------C--CCCCCHHHHHHHcCcHHHHHHHHhcCCccccccc
Confidence            45668999999999  8999999999988 33332        2  235799999999999999999999997432 221


Q ss_pred             -----CCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy599          107 -----RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHD  181 (247)
Q Consensus       107 -----~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  181 (247)
                           ..+.+++|.|...++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus       181 ~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~  260 (437)
T PHA02795        181 LDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV  260 (437)
T ss_pred             chhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence                 236788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCC--------HHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcChhh
Q psy599          182 CAEAGS--------IEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVS  233 (247)
Q Consensus       182 a~~~~~--------~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  233 (247)
                      |+..|+        .++++.|+++|++++.  ...+++..  ...+.++++.++.++...
T Consensus       261 Aa~~g~~~~~~~~~~eIvelLL~~gadI~~--~~~~~~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        261 AVDRGSVIARRETHLKILEILLREPLSIDC--IKLAILNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             HHHcCCcccccccHHHHHHHHHhCCCCCCc--hhHHhhhc--ccchHHHHHHHHHHHHhc
Confidence            999985        6999999999998864  11222211  122678888888776643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.7e-26  Score=189.60  Aligned_cols=156  Identities=17%  Similarity=0.321  Sum_probs=136.0

Q ss_pred             HHHHHHHcC---CHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCC----hHHHHHHHHCCC--CcccCCCCCCCHHHH-
Q psy599           79 PLWCAAAAG---HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH----FGVVKYLVEHGA--DFEVSNRHGHTCLMI-  148 (247)
Q Consensus        79 ~l~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~--~~~~~~~~~~t~l~~-  148 (247)
                      .|+.-..++   +.+++++|+++|++++.. ..|.||||+|+..++    .+++++|+++|+  +++.++..|.||||. 
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~  424 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGL  424 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHH
Confidence            677777766   589999999999999986 789999999988875    899999999987  588889999999984 


Q ss_pred             --HHHcC---------hHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CC-CCCCHHHHHH
Q psy599          149 --ACYKG---------HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DS-YGMTPLLAAA  215 (247)
Q Consensus       149 --a~~~~---------~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~-~g~t~l~~A~  215 (247)
                        |...+         ..+++++|+.+|++++.+|..|.||||+|+..++.+++++|+++|++++. +. .|.||+++|+
T Consensus       425 i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa  504 (672)
T PHA02730        425 ILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSS  504 (672)
T ss_pred             HHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHH
Confidence              33222         34679999999999999999999999999999999999999999999997 54 5899999999


Q ss_pred             Hc--CCHHHHHHHHhcChhhhh
Q psy599          216 VV--GHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       216 ~~--~~~~~~~~Ll~~g~~~~~  235 (247)
                      ..  ++.+++++|+++|+....
T Consensus       505 ~~~~~~~eIv~~LLs~ga~i~~  526 (672)
T PHA02730        505 YRRENKTKLVDLLLSYHPTLET  526 (672)
T ss_pred             HhhcCcHHHHHHHHHcCCCHHH
Confidence            74  789999999999987643

>KOG0508|consensus

Probab=99.95  E-value=2.3e-27  Score=183.66  Aligned_cols=203  Identities=32%  Similarity=0.444  Sum_probs=169.0

Q ss_pred             HHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCc--------cCCCCC
Q psy599           40 MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEH-GAKVNS--------KTRTNS  110 (247)
Q Consensus        40 ~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~--------~~~~~~  110 (247)
                      .|+.-|....+..|+-....    .....+......|.|||-+|+++|+.+++++|+++ ++++..        ....|-
T Consensus        10 naa~~g~l~~l~~ll~~~s~----~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iega   85 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSN----EEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGA   85 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCch----HHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCC
Confidence            56677777766666643111    01112233445788999999999999999999984 555433        334678


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      +|+-.|.-.|++++|+.|+++|+++|.......|||-.||.-|..+++++|+++|+|++..|..|.|.||+|+..|+.++
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I  165 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDI  165 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHH
Confidence            88888889999999999999999999988888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhccC
Q psy599          191 LKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  246 (247)
                      +++|++.|+|++. ...|.|+||.++..|+.+++++|+.+|+....-......++.|
T Consensus       166 ~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~A  222 (615)
T KOG0508|consen  166 AQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLA  222 (615)
T ss_pred             HHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHH
Confidence            9999999999997 8889999999999999999999999998776655544444433

>KOG4177|consensus

Probab=99.95  E-value=7.1e-28  Score=207.32  Aligned_cols=215  Identities=31%  Similarity=0.480  Sum_probs=168.7

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCcccccc-------------------------ccccccCcCCCCHHHHHHH
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA-------------------------VMFDHETVEGAPPLWCAAA   85 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~-------------------------~~~~~~~~~~~t~l~~A~~   85 (247)
                      ...|+||+|.|+.+|+.+.++.++..... ++..+.                         ...+..+..|.|++|+|+.
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhh
Confidence            45688899999999999988888877333 222211                         1222234456777777777


Q ss_pred             cC-CHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhc
Q psy599           86 AG-HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL  164 (247)
Q Consensus        86 ~~-~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  164 (247)
                      .| ..+....++..|.+++.....|.||||.|...|+.++++.+++.++..+.....+.+++|.+...+...++..++++
T Consensus       450 ~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~  529 (1143)
T KOG4177|consen  450 KGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEH  529 (1143)
T ss_pred             cccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhc
Confidence            76 56666666666777777777777777777777777777777776666666666677777777777777777777778


Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhh
Q psy599          165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALEL  243 (247)
Q Consensus       165 ~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  243 (247)
                      |++++.++..+.||||.|+..|+..+|++|+++|++++. ++.|+||||.|+..|+.+++.+|+++|+.++..+.+.-+.
T Consensus       530 ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  530 GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTP  609 (1143)
T ss_pred             CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcch
Confidence            888999999999999999999999999999999999997 8889999999999999999999999999999999998887


Q ss_pred             ccC
Q psy599          244 LGA  246 (247)
Q Consensus       244 ~~~  246 (247)
                      ++.
T Consensus       610 L~i  612 (1143)
T KOG4177|consen  610 LHI  612 (1143)
T ss_pred             hHH
Confidence            653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.2e-25  Score=190.25  Aligned_cols=188  Identities=16%  Similarity=0.192  Sum_probs=154.9

Q ss_pred             HHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCCh-
Q psy599           47 KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA---GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHF-  122 (247)
Q Consensus        47 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~-  122 (247)
                      ++.++.|+..         +...+..|..|.||||+|+..   |+.++++.|++.|++++.++..|.||||+|+..|+. 
T Consensus        12 ~~~~~~l~~~---------~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~   82 (661)
T PHA02917         12 LDELKQMLRD---------RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVK   82 (661)
T ss_pred             HHHHHHHHhc---------cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChh
Confidence            4567777754         223356678999999997655   889999999999999999999999999999999984 


Q ss_pred             ---HHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHH--HhCCHHHHHHHHHc
Q psy599          123 ---GVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA--EAGSIEILKLLLSH  197 (247)
Q Consensus       123 ---~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~--~~~~~~~i~~Ll~~  197 (247)
                         ++++.|++.+...+..+  ..++++.|+..++.+++++|+++|++++.+|..|.||||.++  ..|+.+++++|+++
T Consensus        83 v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~  160 (661)
T PHA02917         83 VNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN  160 (661)
T ss_pred             HHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc
Confidence               45678887643344333  236677889999999999999999999999999999999654  57899999999999


Q ss_pred             CCCCCC-C---CCC-----------CCHHHHHHH-----------cCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          198 GARMDV-D---SYG-----------MTPLLAAAV-----------VGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       198 g~~~~~-~---~~g-----------~t~l~~A~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      |++++. +   ..|           .||||+|+.           .++.+++++|++.|++.+.+..++.++++
T Consensus       161 Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh  234 (661)
T PHA02917        161 GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQ  234 (661)
T ss_pred             CCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHH
Confidence            999863 2   223           599999986           56899999999999999999888877665

>KOG0502|consensus

Probab=99.94  E-value=9.5e-27  Score=163.55  Aligned_cols=192  Identities=26%  Similarity=0.314  Sum_probs=160.3

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +.+|++.++.|+-+++...+...+..         +...+..+..+.+++.+++...+.+.+..+.+.  .+|..|+.|+
T Consensus        93 ~p~g~~~~~v~ap~~s~~k~sttltN---------~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~Gf  161 (296)
T KOG0502|consen   93 DPEGWSALLVAAPCGSVDKVSTTLTN---------GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGF  161 (296)
T ss_pred             CchhhhhhhhcCCCCCcceeeeeecc---------cccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCc
Confidence            34455556666555555555555543         122244455678889999888877776655544  6789999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      |||.||+.+|++.+|++|++.|++++...+...++|.+|++.|..++++.|+.++++++..|++|-|||-+|+.-++.+|
T Consensus       162 TpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkc  241 (296)
T KOG0502|consen  162 TPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKC  241 (296)
T ss_pred             hHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          191 LKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      ++.|+..|++++. +..|.+++.+|+..|+. +++-.++.-++..
T Consensus       242 ve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  242 VESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKL  285 (296)
T ss_pred             HHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence            9999999999997 88999999999999988 7887777655543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.5e-25  Score=182.06  Aligned_cols=215  Identities=14%  Similarity=0.093  Sum_probs=172.1

Q ss_pred             cCCCchHHHHHHh-cCcHHHHHHHHHhcccC---cccccc------------------------ccccccCcCCCCHHHH
Q psy599           31 KFGGATPLIMACR-NGHKEIVEYLVKECKAD---VEETGA------------------------VMFDHETVEGAPPLWC   82 (247)
Q Consensus        31 ~~~g~t~L~~A~~-~g~~~~~~~ll~~~~~~---~~~~~~------------------------~~~~~~~~~~~t~l~~   82 (247)
                      +.+|.+|+++|+. .++.+++++|++.+...   ...+..                        -..+.+|..|.||||+
T Consensus       102 ~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~  181 (631)
T PHA02792        102 KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYY  181 (631)
T ss_pred             cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHH
Confidence            5568899999976 69999999999984321   111000                        1233566779999999


Q ss_pred             HHHcC-------CHHHHHHHHHhCCCCCccCCCCChhHHHHHhcC--ChHHHHHHHHCCCC-------------------
Q psy599           83 AAAAG-------HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDG--HFGVVKYLVEHGAD-------------------  134 (247)
Q Consensus        83 A~~~~-------~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~-------------------  134 (247)
                      |+..+       +.++++.|+.+|++++..+..|.||||+|+...  ..+++++|+.....                   
T Consensus       182 ~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~  261 (631)
T PHA02792        182 YIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNK  261 (631)
T ss_pred             HHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccC
Confidence            99999       899999999999999999999999999999988  67888877752110                   


Q ss_pred             ---cc-------------------------------------------------------------------cCCCCCCC
Q psy599          135 ---FE-------------------------------------------------------------------VSNRHGHT  144 (247)
Q Consensus       135 ---~~-------------------------------------------------------------------~~~~~~~t  144 (247)
                         ++                                                                   ........
T Consensus       262 ~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n  341 (631)
T PHA02792        262 NHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHIN  341 (631)
T ss_pred             ccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcch
Confidence               00                                                                   00011235


Q ss_pred             HHHHHHHcChHHHHHHHHhcCCCccccCCCC--CcHHHHHHHhCCH---HHHHHHHHcCCCCCC-CCCCCCHHHHHHHcC
Q psy599          145 CLMIACYKGHYRIVKYLLSLNADMNRKSSKG--NTALHDCAEAGSI---EILKLLLSHGARMDV-DSYGMTPLLAAAVVG  218 (247)
Q Consensus       145 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~t~l~~a~~~~~~---~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~  218 (247)
                      +++.|+..++.+++++|+++|++++.+|..|  .||||.|......   +++++|+++|++++. +..|.||||+|+..+
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~  421 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESH  421 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence            6788999999999999999999999988775  5999988776654   468999999999997 889999999999999


Q ss_pred             CHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          219 HQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       219 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +.+++++|+++|++.+.+...+-+.++
T Consensus       422 n~eivelLLs~GADIN~kD~~G~TpL~  448 (631)
T PHA02792        422 SVSLVEWLIDNGADINITTKYGSTCIG  448 (631)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            999999999999999988877766554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=8.7e-25  Score=189.89  Aligned_cols=189  Identities=25%  Similarity=0.262  Sum_probs=152.2

Q ss_pred             cCCCchHHH-HHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC--C-HHHHHHHHHhCCC-----
Q psy599           31 KFGGATPLI-MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG--H-LPIVQFLVEHGAK-----  101 (247)
Q Consensus        31 ~~~g~t~L~-~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~--~-~~~~~~Ll~~~~~-----  101 (247)
                      |..|.|||| .|+.+++.++++.|++...             .+..|.|+||.|+..+  . ..++..+...+..     
T Consensus        49 d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-------------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~  115 (743)
T TIGR00870        49 DRLGRSALFVAAIENENLELTELLLNLSC-------------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLE  115 (743)
T ss_pred             CccchhHHHHHHHhcChHHHHHHHHhCCC-------------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchh
Confidence            567999999 8888999999999998621             4567999999998732  2 2333444443321     


Q ss_pred             -C----CccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCC--------------CCCCCHHHHHHHcChHHHHHHHH
Q psy599          102 -V----NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN--------------RHGHTCLMIACYKGHYRIVKYLL  162 (247)
Q Consensus       102 -~----~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~Ll  162 (247)
                       .    ......|.||||+|+..|+.+++++|+++|++++.+.              ..|.||+|.|+..++.++++.|+
T Consensus       116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl  195 (743)
T TIGR00870       116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLS  195 (743)
T ss_pred             hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHh
Confidence             1    1123469999999999999999999999999988653              25889999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHHhC---------CHHHHHHHHHcCCCC-------CC-CCCCCCHHHHHHHcCCHHHHHH
Q psy599          163 SLNADMNRKSSKGNTALHDCAEAG---------SIEILKLLLSHGARM-------DV-DSYGMTPLLAAAVVGHQHIVEY  225 (247)
Q Consensus       163 ~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~i~~Ll~~g~~~-------~~-~~~g~t~l~~A~~~~~~~~~~~  225 (247)
                      +.|++++.+|..|+||||+|+..+         ...+.+++++.++..       ++ |..|.||+++|+..|+.+++++
T Consensus       196 ~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~l  275 (743)
T TIGR00870       196 EDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRL  275 (743)
T ss_pred             cCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHH
Confidence            999999999999999999999986         234667777766654       33 8889999999999999999999


Q ss_pred             HHhcChh
Q psy599          226 LIGLNIV  232 (247)
Q Consensus       226 Ll~~g~~  232 (247)
                      |++.++.
T Consensus       276 LL~~~~~  282 (743)
T TIGR00870       276 KLAIKYK  282 (743)
T ss_pred             HHHHHHh
Confidence            9986544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.9e-24  Score=176.68  Aligned_cols=198  Identities=16%  Similarity=0.154  Sum_probs=158.7

Q ss_pred             hhccCCCchHHHHHHhcC-------cHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC--CHHHHHHHHHh
Q psy599           28 TKFKFGGATPLIMACRNG-------HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG--HLPIVQFLVEH   98 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g-------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~~~~Ll~~   98 (247)
                      ...+..|.||||+|+.++       +.++++.|+++         +......|..|.||||+|+...  ..|+++.|+..
T Consensus       169 ~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~---------g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        169 DYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH---------EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             ccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC---------CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence            344667999999999998       89999999987         3333455667899999999888  77888877653


Q ss_pred             CCC----------------------C------------------------------------------------------
Q psy599           99 GAK----------------------V------------------------------------------------------  102 (247)
Q Consensus        99 ~~~----------------------~------------------------------------------------------  102 (247)
                      ..+                      +                                                      
T Consensus       240 ~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v  319 (631)
T PHA02792        240 NYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTV  319 (631)
T ss_pred             cccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCc
Confidence            211                      0                                                      


Q ss_pred             -------------CccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCC--CCHHHHHHHcChH---HHHHHHHhc
Q psy599          103 -------------NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG--HTCLMIACYKGHY---RIVKYLLSL  164 (247)
Q Consensus       103 -------------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~t~l~~a~~~~~~---~~~~~Ll~~  164 (247)
                                   +........+++.|+..++.+++++|+++|++++.++..|  .||+|.|+.....   +++++|+++
T Consensus       320 ~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~  399 (631)
T PHA02792        320 YINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY  399 (631)
T ss_pred             cHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc
Confidence                         0000123456788899999999999999999999988775  5899988776664   457888999


Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHH--c--------CCHHHHHHHHhcChhh
Q psy599          165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV--V--------GHQHIVEYLIGLNIVS  233 (247)
Q Consensus       165 ~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~--~--------~~~~~~~~Ll~~g~~~  233 (247)
                      |++++.+|..|.||||+|+..++.+++++|+++|++++. +..|.||+++|+.  .        ...++++.|+++|...
T Consensus       400 GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        400 IDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             CCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999999999999999999999997 8899999999986  2        2256789999988655


Q ss_pred             h
Q psy599          234 R  234 (247)
Q Consensus       234 ~  234 (247)
                      .
T Consensus       480 ~  480 (631)
T PHA02792        480 E  480 (631)
T ss_pred             h
Confidence            3

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=7.8e-25  Score=155.92  Aligned_cols=139  Identities=18%  Similarity=0.274  Sum_probs=73.3

Q ss_pred             CCCccCCCCChhHHHHHhcCCh----HHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHH---HHHHHHhcCCCccccC-
Q psy599          101 KVNSKTRTNSTPLRAACFDGHF----GVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYR---IVKYLLSLNADMNRKS-  172 (247)
Q Consensus       101 ~~~~~~~~~~~~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~Ll~~~~~~~~~~-  172 (247)
                      +++..+..+.+++|.|++.|+.    +++++|.+.+..++..+..|+||||+|+..++.+   ++++|++.|++++.++ 
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~   91 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAREL   91 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC
Confidence            3333444444555555555554    3334444555555555555555555555554433   2455555555555554 


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHH-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccc
Q psy599          173 SKGNTALHDCAEAGSIEILKLLLS-HGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKID  239 (247)
Q Consensus       173 ~~~~t~l~~a~~~~~~~~i~~Ll~-~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  239 (247)
                      ..|.||||+|+..|+.+++++|++ .|++++. +..|.||||+|+..++.+++++|+++|++.+.+.-.
T Consensus        92 ~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         92 GTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence            345555555555555555555553 4555554 455555555555555555555555555555544433

>KOG0507|consensus

Probab=99.92  E-value=5e-25  Score=179.32  Aligned_cols=199  Identities=29%  Similarity=0.379  Sum_probs=179.7

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      |.+|+|.||.|+.+|+.++.+.|++.         ...++..+..|.+|||+|+..|+.++++.++.++..+|.....|.
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~---------ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~  116 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDY---------EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENE  116 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcc---------hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCc
Confidence            67899999999999999999999986         445566678899999999999999999999999988999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCC--------ccccCCCCCcHHHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD--------MNRKSSKGNTALHDC  182 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--------~~~~~~~~~t~l~~a  182 (247)
                      +|+|.|+..|+.+++.+|+.++.++..++.++.|++..|++.|..+++..|++...+        -..++..+.+|||.|
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHla  196 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLA  196 (854)
T ss_pred             CccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchh
Confidence            999999999999999999999999999999999999999999999999999876332        233455678899999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhcc
Q psy599          183 AEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKI  238 (247)
Q Consensus       183 ~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~  238 (247)
                      +++|..++++.|++.|.+++.-....|+||.|+..|..+++++|++.|+..-.+.-
T Consensus       197 akngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~  252 (854)
T KOG0507|consen  197 AKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQ  252 (854)
T ss_pred             hhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhccccccccc
Confidence            99999999999999999999877778999999999999999999999987655443

>KOG0514|consensus

Probab=99.91  E-value=2.9e-24  Score=161.55  Aligned_cols=194  Identities=29%  Similarity=0.388  Sum_probs=159.7

Q ss_pred             HHHhc-CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhC-CCCCccCCCCChhHHHHH
Q psy599           40 MACRN-GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG-AKVNSKTRTNSTPLRAAC  117 (247)
Q Consensus        40 ~A~~~-g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~  117 (247)
                      .|+.. .+++.|+-.+..+.......-.-+.+..|.+|+|+|||++.++|+++|+.|++.| ++++.++..|.||++.++
T Consensus       231 ~a~~s~a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaA  310 (452)
T KOG0514|consen  231 NSSTSSSDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAA  310 (452)
T ss_pred             hcccCCCCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHH
Confidence            34443 4567776666554443322223456778899999999999999999999999987 699999999999999887


Q ss_pred             hc-----CChHHHHHHHHCCCCcccCC-CCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHH
Q psy599          118 FD-----GHFGVVKYLVEHGADFEVSN-RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL  191 (247)
Q Consensus       118 ~~-----~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i  191 (247)
                      ..     ...++|..|...| ++|.+- ..|.|+|++|+.+|+.++++.|+..|+++|.+|.+|.|+|++|+.+|+.+++
T Consensus       311 LA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEiv  389 (452)
T KOG0514|consen  311 LAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIV  389 (452)
T ss_pred             HHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHH
Confidence            65     3567888888876 566554 4699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          192 KLLLSH-GARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       192 ~~Ll~~-g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      ++||.. +++... +..|.|+|.+|...|+.||.-.|..+--+.+
T Consensus       390 klLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~~~  434 (452)
T KOG0514|consen  390 KLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNIKR  434 (452)
T ss_pred             HHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHHhhh
Confidence            999955 455554 8999999999999999999998886544444

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=150.36  Aligned_cols=132  Identities=23%  Similarity=0.342  Sum_probs=93.1

Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHH------CCCCcccCCCCCCCHHHHHHHcCh----HHHHHHHHhcCCCccccCC
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVE------HGADFEVSNRHGHTCLMIACYKGH----YRIVKYLLSLNADMNRKSS  173 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~  173 (247)
                      .++..|.++||+|++.|+.++++.|+.      .+.+++.++..|.||||+|+..++    .+++++|+++|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            345566677777777777777766643      235566677777777777777776    4667777777777777764


Q ss_pred             -CCCcHHHHHHHhCCHHHHHHHHH-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhh
Q psy599          174 -KGNTALHDCAEAGSIEILKLLLS-HGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       174 -~~~t~l~~a~~~~~~~~i~~Ll~-~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                       .|+||||+|+..++.+++++|++ .|++++. +..|+|||++|+..++.+++++|++.++..+.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~~  160 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATSRG  160 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence             67777777777777777777776 4777765 67777777777777777777777777665543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.4e-23  Score=158.45  Aligned_cols=154  Identities=18%  Similarity=0.168  Sum_probs=134.9

Q ss_pred             cCcCCC-CHHHHHHHcCCHHHHHHHHHhCCCCCccC----CCCChhHHHHHhcCChHHHHHHHHCCCCcccC-CCCCCCH
Q psy599           72 ETVEGA-PPLWCAAAAGHLPIVQFLVEHGAKVNSKT----RTNSTPLRAACFDGHFGVVKYLVEHGADFEVS-NRHGHTC  145 (247)
Q Consensus        72 ~~~~~~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~  145 (247)
                      +|..+. ++||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.+ +..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            444554 46778888899999999999999999874    58999999999999999999999999999986 4579999


Q ss_pred             HHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q psy599          146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEY  225 (247)
Q Consensus       146 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~  225 (247)
                      ||.|+..++.+++++|+..|++++.++..|.||||.|+..++.+++..+...    +.+..+.+|.+++   ++.+++++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~n~ei~~~  180 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN----EISNFYKHPKKIL---INFDILKI  180 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC----cccccccChhhhh---ccHHHHHH
Confidence            9999999999999999999999999999999999999999998887666533    2466778888875   47899999


Q ss_pred             HHhcChh
Q psy599          226 LIGLNIV  232 (247)
Q Consensus       226 Ll~~g~~  232 (247)
                      |+.++..
T Consensus       181 Lish~vl  187 (300)
T PHA02884        181 LVSHFIL  187 (300)
T ss_pred             HHHHHHH
Confidence            9999984

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=3.5e-23  Score=147.42  Aligned_cols=132  Identities=17%  Similarity=0.277  Sum_probs=120.3

Q ss_pred             cCcCCCCHHHHHHHcCCH----HHHHHHHHhCCCCCccCCCCChhHHHHHhcCChH---HHHHHHHCCCCcccCC-CCCC
Q psy599           72 ETVEGAPPLWCAAAAGHL----PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG---VVKYLVEHGADFEVSN-RHGH  143 (247)
Q Consensus        72 ~~~~~~t~l~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---~~~~Ll~~~~~~~~~~-~~~~  143 (247)
                      .+..+.+++|.|++.|+.    +++++|.+.|..++.++..|.||||+|+..|+.+   ++++|+++|++++.++ ..|.
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            445678899999999998    5666778889899999999999999999998865   4899999999999998 5899


Q ss_pred             CHHHHHHHcChHHHHHHHHh-cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC
Q psy599          144 TCLMIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV  203 (247)
Q Consensus       144 t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~  203 (247)
                      ||||+|+..++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+++|++++.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~  156 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDD  156 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999995 7999999999999999999999999999999999999874

>KOG0502|consensus

Probab=99.91  E-value=3.6e-24  Score=150.64  Aligned_cols=169  Identities=28%  Similarity=0.362  Sum_probs=151.2

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +.-+++|+..++...+++....+.+           ...+..|..|.|||.+|+..|+++.+++|++.|++++.-.+...
T Consensus       126 s~~p~s~~slsVhql~L~~~~~~~~-----------n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~re  194 (296)
T KOG0502|consen  126 SLMPWSPLSLSVHQLHLDVVDLLVN-----------NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRE  194 (296)
T ss_pred             ccccCChhhHHHHHHHHHHHHHHhh-----------ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhh
Confidence            4558899999999998888777764           34577889999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ++|..|++.|..++|++|+.+++++|..|.+|-|||-+|++.+..++++.|+..|++++..+..|.+++..|+..|+. +
T Consensus       195 sALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~  273 (296)
T KOG0502|consen  195 SALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-I  273 (296)
T ss_pred             hhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHH
Q psy599          191 LKLLLSHGARMDV-DSYGMTPL  211 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l  211 (247)
                      ++..+++.+.... +..-.+|+
T Consensus       274 Vqqvie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  274 VQQVIEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             HHHHHHHHHHHHhhcccCCCCC
Confidence            8888877665544 44444443

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=8.1e-23  Score=146.23  Aligned_cols=131  Identities=18%  Similarity=0.263  Sum_probs=119.6

Q ss_pred             ccCcCCCCHHHHHHHcCCHHHHHHHHH------hCCCCCccCCCCChhHHHHHhcCC----hHHHHHHHHCCCCcccCCC
Q psy599           71 HETVEGAPPLWCAAAAGHLPIVQFLVE------HGAKVNSKTRTNSTPLRAACFDGH----FGVVKYLVEHGADFEVSNR  140 (247)
Q Consensus        71 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~  140 (247)
                      ..+..|.|+||+|+..|+.++++.|+.      .|++++.++..|.||||+|+..|+    .+++++|+++|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            356689999999999999999999864      357889999999999999999998    5899999999999999885


Q ss_pred             -CCCCHHHHHHHcChHHHHHHHHh-cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC
Q psy599          141 -HGHTCLMIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM  201 (247)
Q Consensus       141 -~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~  201 (247)
                       .|.||||+|+..++.+++++|+. .+++++.+|..|+||||+|+..++.+++++|++.++..
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence             89999999999999999999997 59999999999999999999999999999999987553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=3e-23  Score=180.35  Aligned_cols=192  Identities=21%  Similarity=0.230  Sum_probs=152.7

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHH-HHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLW-CAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~-~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      .++..|+.|+..|+.+.++.+++..+       +...+..|..|.|||| .|+..++.++++.|++.|.    .+..|.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~-------~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T   84 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPK-------KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDT   84 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhcccc-------ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChH
Confidence            45688999999999999999997632       2334567788999999 8888899999999999887    5678999


Q ss_pred             hHHHHHhcC---ChHHHHHHHHCCCC------cc----cCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccC------
Q psy599          112 PLRAACFDG---HFGVVKYLVEHGAD------FE----VSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS------  172 (247)
Q Consensus       112 ~l~~a~~~~---~~~~~~~Ll~~~~~------~~----~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~------  172 (247)
                      |||.|+..+   ...++..+...+.+      .+    .....|.||||+|+..++.++++.|+++|++++.++      
T Consensus        85 ~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~  164 (743)
T TIGR00870        85 LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV  164 (743)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh
Confidence            999998732   22334444443321      11    123468999999999999999999999999988653      


Q ss_pred             --------CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcC---------CHHHHHHHHhcChhhh
Q psy599          173 --------SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVG---------HQHIVEYLIGLNIVSR  234 (247)
Q Consensus       173 --------~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~---------~~~~~~~Ll~~g~~~~  234 (247)
                              ..|.||||.|+..|+.+++++|+++|++++. +..|+||||+|+..+         ...+.+++++.+...+
T Consensus       165 ~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~  244 (743)
T TIGR00870       165 KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLR  244 (743)
T ss_pred             cCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence                    3589999999999999999999999999987 888999999999987         3446677777766654


Q ss_pred             h
Q psy599          235 K  235 (247)
Q Consensus       235 ~  235 (247)
                      .
T Consensus       245 ~  245 (743)
T TIGR00870       245 D  245 (743)
T ss_pred             C
Confidence            3

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514|consensus

Probab=99.90  E-value=3.1e-23  Score=156.08  Aligned_cols=162  Identities=33%  Similarity=0.452  Sum_probs=142.7

Q ss_pred             HhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC-----CHHHHHHHHHhCCC
Q psy599           27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG-----HLPIVQFLVEHGAK  101 (247)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~-----~~~~~~~Ll~~~~~  101 (247)
                      ++.-|.+|+|+||+|+.++++++|+.||+.        +....+..+.-|.||++.++...     ..++|..|++.| +
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDS--------gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-n  331 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDS--------GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-D  331 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhcc--------CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-C
Confidence            344489999999999999999999999986        45556777889999999887653     567788888765 4


Q ss_pred             CCccC-CCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCccccCCCCCcHH
Q psy599          102 VNSKT-RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTAL  179 (247)
Q Consensus       102 ~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l  179 (247)
                      +|.+. ..|+|+|+.|+..|+.++++.|+..|+++|.+|.+|.|+|++|+.+|+.++++.|+.. ++++...|.+|.|+|
T Consensus       332 VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl  411 (452)
T KOG0514|consen  332 VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTAL  411 (452)
T ss_pred             cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhh
Confidence            55543 5799999999999999999999999999999999999999999999999999999976 789999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHc
Q psy599          180 HDCAEAGSIEILKLLLSH  197 (247)
Q Consensus       180 ~~a~~~~~~~~i~~Ll~~  197 (247)
                      .+|...|+.+|.-+|..+
T Consensus       412 ~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  412 SIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhHHhcCchHHHHHHHHH
Confidence            999999999999888755

>KOG0507|consensus

Probab=99.90  E-value=2.6e-23  Score=169.42  Aligned_cols=212  Identities=25%  Similarity=0.292  Sum_probs=184.4

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcccC----ccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           36 TPLIMACRNGHKEIVEYLVKECKAD----VEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        36 t~L~~A~~~g~~~~~~~ll~~~~~~----~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      +=+..|++.|+.+.+..+++..+..    .........+..|..|.|+||.|+.+|+..+++.|++..+.++..+..|.+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~   84 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL   84 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc
Confidence            4477899999999999999864331    111112345566779999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHH
Q psy599          112 PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL  191 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i  191 (247)
                      |+|+|+..|+.++++.++.++..++..+..|.||+|.|++.|..+++.+|+.++.+.-.++..+.|++..|++.|..+++
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vv  164 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVV  164 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHH
Confidence            99999999999999999999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCC---------CCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhccCC
Q psy599          192 KLLLSHGARMD---------VDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS  247 (247)
Q Consensus       192 ~~Ll~~g~~~~---------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  247 (247)
                      +.|++......         ....+.+|+|+|+++|+.++++.|++.|.+++..-.++-.+.-||
T Consensus       165 q~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaa  229 (854)
T KOG0507|consen  165 QMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAA  229 (854)
T ss_pred             HHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHh
Confidence            99998733221         134567999999999999999999999999998888777665543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=3.5e-22  Score=141.03  Aligned_cols=133  Identities=20%  Similarity=0.231  Sum_probs=80.2

Q ss_pred             cccCcCCCCHHHHHHHcCCHHHHHHHHHhCCC-----CCccCCCCChhHHHHHhcCCh---HHHHHHHHCCCCcccCC-C
Q psy599           70 DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK-----VNSKTRTNSTPLRAACFDGHF---GVVKYLVEHGADFEVSN-R  140 (247)
Q Consensus        70 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~-~  140 (247)
                      ...|..|.||||+|++.|+.+.+........+     .+.++..|.||||+|+..++.   +++++|++.|++++.++ .
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            44556677788877777763221111111111     123455666777777766654   34566666666666665 3


Q ss_pred             CCCCHHHHHHHcChHHHHHHHHh-cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy599          141 HGHTCLMIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD  202 (247)
Q Consensus       141 ~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~  202 (247)
                      .|.||||+|+..++.+++++|+. .|++++.++..|.||||+|+..|+.+++++|+++|++.+
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            66666666666666666666665 366666666666666666666666666666666666543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=3e-22  Score=141.37  Aligned_cols=145  Identities=21%  Similarity=0.326  Sum_probs=118.1

Q ss_pred             HHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCH---HHHHHHHH
Q psy599           21 HEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHL---PIVQFLVE   97 (247)
Q Consensus        21 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~---~~~~~Ll~   97 (247)
                      .+++.+....+..|.||||+|+..|+..  ..+... .... ..........+..|.||||+|+..|+.   +++++|++
T Consensus         4 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~-~~~~-~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~   79 (154)
T PHA02736          4 PEEIIFASEPDIEGENILHYLCRNGGVT--DLLAFK-NAIS-DENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME   79 (154)
T ss_pred             cchhhHHHhcCCCCCCHHHHHHHhCCHH--HHHHHH-HHhc-chhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH
Confidence            4567778888999999999999999842  332221 1000 001122344577899999999999987   46889999


Q ss_pred             hCCCCCccC-CCCChhHHHHHhcCChHHHHHHHH-CCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCcc
Q psy599           98 HGAKVNSKT-RTNSTPLRAACFDGHFGVVKYLVE-HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN  169 (247)
Q Consensus        98 ~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  169 (247)
                      .|++++.++ ..|.||||+|+..++.+++++|+. .+++++.++..|.||+|+|+..++.+++++|+++|++.+
T Consensus        80 ~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         80 WGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999998 589999999999999999999998 489999999999999999999999999999999987654

>KOG0505|consensus

Probab=99.88  E-value=2.9e-22  Score=157.80  Aligned_cols=179  Identities=31%  Similarity=0.446  Sum_probs=120.6

Q ss_pred             hhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCC
Q psy599           28 TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTR  107 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  107 (247)
                      ...+.+|.|+||.+|...+.+|++++++.         +..++..|..++||+|.|+.-|+..++++++..|+++...+.
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~---------ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNs  137 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVEN---------GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNS  137 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHh---------cCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccC
Confidence            34466777777777777777777777776         344466666777777777777777777777777766555544


Q ss_pred             CCChhHHHHHhcCC---------------------------hHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHH
Q psy599          108 TNSTPLRAACFDGH---------------------------FGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKY  160 (247)
Q Consensus       108 ~~~~~l~~a~~~~~---------------------------~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  160 (247)
                      +|..|...+.....                           .++-+|+. .|...+..+..|.|++|.|...|..++.++
T Consensus       138 dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~l  216 (527)
T KOG0505|consen  138 DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHARGATALHVAAANGYTEVAAL  216 (527)
T ss_pred             CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHH
Confidence            44444322111100                           11222332 455556666667788888888888888888


Q ss_pred             HHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHH
Q psy599          161 LLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV  216 (247)
Q Consensus       161 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~  216 (247)
                      |++.|.+++.+|.+|+||||.|+..|..++++.|+++|++++. ...|.+|+.+|..
T Consensus       217 Ll~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  217 LLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            8888888888888888888888888888888877788887776 6677777777664

>KOG3676|consensus

Probab=99.88  E-value=8.1e-22  Score=162.38  Aligned_cols=196  Identities=24%  Similarity=0.253  Sum_probs=140.5

Q ss_pred             cHHHHHHHhhccCCCchHHHHHHhc---CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHH
Q psy599           20 THEEIQMVTKFKFGGATPLIMACRN---GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLV   96 (247)
Q Consensus        20 ~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll   96 (247)
                      ++...+-+..+...|.|.||.|..+   ++.+++..|++..+.-++    .........|.|+||.|+.+.+.++|+.|+
T Consensus       129 ~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lin----d~~~~eeY~GqSaLHiAIv~~~~~~V~lLl  204 (782)
T KOG3676|consen  129 YRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIN----DIYTSEEYYGQSALHIAIVNRDAELVRLLL  204 (782)
T ss_pred             hhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhh----hhhhhHhhcCcchHHHHHHhccHHHHHHHH
Confidence            4444566677778899999999994   556999999998765443    334556678999999999999999999999


Q ss_pred             HhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCC
Q psy599           97 EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN  176 (247)
Q Consensus        97 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~  176 (247)
                      +.|++++.+.....   +.+-..+...       ...+....-..|+.||.+|++.++.+++++|+++|+|++.+|..|+
T Consensus       205 ~~gADV~aRa~G~F---F~~~dqk~~r-------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GN  274 (782)
T KOG3676|consen  205 AAGADVHARACGAF---FCPDDQKASR-------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGN  274 (782)
T ss_pred             HcCCchhhHhhccc---cCcccccccc-------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCC
Confidence            99999887643210   0000000000       2223333344577777777777777777777777777777777777


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCC--CCC-CCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy599          177 TALHDCAEAGSIEILKLLLSHGAR--MDV-DSYGMTPLLAAAVVGHQHIVEYLIGL  229 (247)
Q Consensus       177 t~l~~a~~~~~~~~i~~Ll~~g~~--~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~  229 (247)
                      |.||..+..-..++..+++++|+.  ..+ |..|.|||.+|++.|+.++++.+++.
T Consensus       275 TVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  275 TVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            777777777777777777777777  444 77777777777777777777777766

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.9e-21  Score=146.63  Aligned_cols=160  Identities=20%  Similarity=0.167  Sum_probs=130.0

Q ss_pred             HhhccCCCch-HHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCcc
Q psy599           27 VTKFKFGGAT-PLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK  105 (247)
Q Consensus        27 ~~~~~~~g~t-~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  105 (247)
                      +...+..|.| +||.|+..|+.+++++|++++ .+++...    ...+..|.||||+|+..++.+++++|+++|++++.+
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~G-AdiN~~~----~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~   99 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLG-ADPEAPF----PLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY   99 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCC-CCccccC----cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc
Confidence            4555666665 578888889999999999873 2332110    012457999999999999999999999999999986


Q ss_pred             -CCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q psy599          106 -TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE  184 (247)
Q Consensus       106 -~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  184 (247)
                       +..|.||||.|+..++.+++++|+++|++++.++..|.||+|.|+..++.+++..+...  .   .+..+.+|.+++  
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~--  172 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E---ISNFYKHPKKIL--  172 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c---ccccccChhhhh--
Confidence             46799999999999999999999999999999999999999999999888887665432  2   344566788865  


Q ss_pred             hCCHHHHHHHHHcCC
Q psy599          185 AGSIEILKLLLSHGA  199 (247)
Q Consensus       185 ~~~~~~i~~Ll~~g~  199 (247)
                       ++.++++.|+.+++
T Consensus       173 -~n~ei~~~Lish~v  186 (300)
T PHA02884        173 -INFDILKILVSHFI  186 (300)
T ss_pred             -ccHHHHHHHHHHHH
Confidence             46899999999887

>KOG0505|consensus

Probab=99.87  E-value=2e-21  Score=153.17  Aligned_cols=200  Identities=30%  Similarity=0.408  Sum_probs=166.1

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHH
Q psy599           35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLR  114 (247)
Q Consensus        35 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  114 (247)
                      --.+..|+..|+.+-+..|+...         ...+..+.+|.|++|-++...+.+|+++|++.|.+++..+..++||+|
T Consensus        41 sa~~l~A~~~~d~~ev~~ll~~g---------a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlh  111 (527)
T KOG0505|consen   41 SAVFLEACSRGDLEEVRKLLNRG---------ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLH  111 (527)
T ss_pred             hHHHHhccccccHHHHHHHhccC---------CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcch
Confidence            34588899999999999999763         223666778999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHH------------H--cChHH---------H---HHHHHhcCCCc
Q psy599          115 AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC------------Y--KGHYR---------I---VKYLLSLNADM  168 (247)
Q Consensus       115 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~------------~--~~~~~---------~---~~~Ll~~~~~~  168 (247)
                      .|+..|+..++++|+.+|+++...+..|..|..++-            .  .-.++         |   ++..+..|...
T Consensus       112 aaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~  191 (527)
T KOG0505|consen  112 AAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL  191 (527)
T ss_pred             hhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc
Confidence            999999999999999999888776666665433221            1  11111         1   11223367777


Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhh
Q psy599          169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALEL  243 (247)
Q Consensus       169 ~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  243 (247)
                      +..+..|-|.||.|...|..++.++|+++|.++++ +..|+||||.|+.++..++.++|+++|++...+.....+.
T Consensus       192 d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p  267 (527)
T KOG0505|consen  192 DARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETP  267 (527)
T ss_pred             cccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCC
Confidence            78888899999999999999999999999999998 8999999999999999999999999999988776655443

>KOG0512|consensus

Probab=99.86  E-value=6.1e-21  Score=129.60  Aligned_cols=141  Identities=29%  Similarity=0.349  Sum_probs=125.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCC-CCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHH
Q psy599           78 PPLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYR  156 (247)
Q Consensus        78 t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  156 (247)
                      ..+.+|+..+....|+.|++..+ .+|.+|.+|.||||-|+.+|+.+|++.|+..|++++.+...|+||||.||..++.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            35678999999999999998766 48999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHHhCCH-HHHHHHH-HcCCCCCC-CCCCCCHHHHHHHcC
Q psy599          157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSI-EILKLLL-SHGARMDV-DSYGMTPLLAAAVVG  218 (247)
Q Consensus       157 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-~~i~~Ll-~~g~~~~~-~~~g~t~l~~A~~~~  218 (247)
                      ++-.|+++|++++.......||||.|+...+. ..+++|+ ..+.+... +..+.||+.+|-+.+
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999999999999999998765 4556655 44555554 788999999998764

>KOG0512|consensus

Probab=99.85  E-value=2.1e-19  Score=122.21  Aligned_cols=144  Identities=28%  Similarity=0.296  Sum_probs=128.5

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHH
Q psy599           36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRA  115 (247)
Q Consensus        36 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  115 (247)
                      -.+..|+..+....|+.|++.        ....++.+|..+.||||-|+.+|+.++++.|+..|++++.+...|+||||-
T Consensus        65 rl~lwaae~nrl~eV~~lL~e--------~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhS  136 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSE--------KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHS  136 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHh--------ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhh
Confidence            347899999999999999987        345568888999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChH-HHHHHHH-hcCCCccccCCCCCcHHHHHHHhCC
Q psy599          116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY-RIVKYLL-SLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       116 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      ||.-.+.+++-.|+++|++++.......||||+|+...+. .-+++|+ ..++.+..++..+.||+.+|-+.+.
T Consensus       137 AckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  137 ACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            9999999999999999999999999999999999987664 4456665 5577888888999999999988753

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.83  E-value=4e-19  Score=120.92  Aligned_cols=122  Identities=43%  Similarity=0.675  Sum_probs=77.0

Q ss_pred             CCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q psy599          106 TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEA  185 (247)
Q Consensus       106 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  185 (247)
                      +..|.+|+++|+..++.+++++|++.+.+.+..+..|.+|+|.|+..++.+++++|++.+.+++..+..+.||+|.|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            34556666666666666666666666655555566666666666666666666666666655555556666666666666


Q ss_pred             CCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Q psy599          186 GSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI  227 (247)
Q Consensus       186 ~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll  227 (247)
                      ++.+++++|+++|.+.+. +..|.||+++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            666666666666655554 555666666666666666666653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=1e-18  Score=118.84  Aligned_cols=123  Identities=42%  Similarity=0.692  Sum_probs=116.6

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK  152 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  152 (247)
                      +..|.||||+|+..++.+++++|++.+...+.++..|.+|++.|+..++.+++++|+..+..++..+..+.||+|.|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            45799999999999999999999999998888899999999999999999999999999988888889999999999999


Q ss_pred             ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q psy599          153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL  195 (247)
Q Consensus       153 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll  195 (247)
                      ++.+++++|+..+.+.+..+..+.||++.|+..++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999889889999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=4e-19  Score=113.60  Aligned_cols=88  Identities=41%  Similarity=0.630  Sum_probs=45.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHH
Q psy599           80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVK  159 (247)
Q Consensus        80 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  159 (247)
                      ||+|+..|+.+++++|++.+.+++.    |.+|+|+|+..|+.+++++|+++|++++..+..|+||+|+|+..++.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            3555555555555555555544443    444555555555555555555555555555555555555555555555555


Q ss_pred             HHHhcCCCcccc
Q psy599          160 YLLSLNADMNRK  171 (247)
Q Consensus       160 ~Ll~~~~~~~~~  171 (247)
                      +|+++|++++.+
T Consensus        77 ~Ll~~g~~~~~~   88 (89)
T PF12796_consen   77 LLLEHGADVNIR   88 (89)
T ss_dssp             HHHHTTT-TTSS
T ss_pred             HHHHcCCCCCCc
Confidence            555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.81  E-value=1.8e-19  Score=132.24  Aligned_cols=135  Identities=33%  Similarity=0.467  Sum_probs=98.6

Q ss_pred             cccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHH
Q psy599           68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLM  147 (247)
Q Consensus        68 ~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  147 (247)
                      .++.-|..|.+|||+|++.|+..+++.|+.+|+.+|..+....+|||.|+..|+-++|+.|+++.+++|..+..|.||||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplh  105 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLH  105 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchh
Confidence            44556667788888888888888888888888888877777778888888888888888888877888888888888888


Q ss_pred             HHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy599          148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD  202 (247)
Q Consensus       148 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~  202 (247)
                      +||..|...+++-|+..|+.++..++.|.|||..|--.-...+.+.--++|-.++
T Consensus       106 yacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  106 YACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            8888888888888888888777777888888776643322223333334454444

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=7.1e-19  Score=112.42  Aligned_cols=86  Identities=47%  Similarity=0.746  Sum_probs=53.8

Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHH
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK  192 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~  192 (247)
                      ||+|++.|+.+++++|++.+.+++.    |.||+|+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            4566666666666666666555544    556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCCCC
Q psy599          193 LLLSHGARMD  202 (247)
Q Consensus       193 ~Ll~~g~~~~  202 (247)
                      +|+++|++++
T Consensus        77 ~Ll~~g~~~~   86 (89)
T PF12796_consen   77 LLLEHGADVN   86 (89)
T ss_dssp             HHHHTTT-TT
T ss_pred             HHHHcCCCCC
Confidence            6666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.79  E-value=6.2e-19  Score=129.51  Aligned_cols=151  Identities=29%  Similarity=0.362  Sum_probs=125.3

Q ss_pred             HHcCCHHHHHHHH-HhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHH
Q psy599           84 AAAGHLPIVQFLV-EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL  162 (247)
Q Consensus        84 ~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  162 (247)
                      ++.|+.--++..+ +..-+.|.-|..|++|||+|++.|+..+++.|+.+|+.+|..+....||||+|+.+|.-+++..|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            3444443333333 344577888889999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       163 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      ++.++++..+..|.||||+||..|...+.+-|+..|+.+++ ++.|.||++.|--.-...+.+.--++|...+
T Consensus        88 ~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999998 9999999987753333333333334555444

>KOG4369|consensus

Probab=99.76  E-value=9.4e-19  Score=148.42  Aligned_cols=164  Identities=26%  Similarity=0.396  Sum_probs=112.7

Q ss_pred             cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC--CCCChhHHHHHhcCChHHHHHHHHCCCCcccCC-CCCCCHHHH
Q psy599           72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT--RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMI  148 (247)
Q Consensus        72 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~  148 (247)
                      ++....||+..|..-|..+++..|+..|..++.+.  +.|-.||..|...|+......|++.|.++|..- .+-+|+|-+
T Consensus       853 rnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltl  932 (2131)
T KOG4369|consen  853 RNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTL  932 (2131)
T ss_pred             cchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceee
Confidence            34456677777777777777777777776666554  446777777777777777777777777776533 245677777


Q ss_pred             HHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-------------------------
Q psy599          149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-------------------------  203 (247)
Q Consensus       149 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-------------------------  203 (247)
                      |+-.|+.+++..|+.+.+++..+-+.|.|||+.++..|.+++-+.|+..|+|.+.                         
T Consensus       933 a~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~ 1012 (2131)
T KOG4369|consen  933 ALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPK 1012 (2131)
T ss_pred             ccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHH
Confidence            7777777777777777777777777788888888888888888888888777631                         


Q ss_pred             -----------CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhh
Q psy599          204 -----------DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       204 -----------~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                                 |+.|.|+|.+|+..|.+..+.+|+++++++..
T Consensus      1013 lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~ 1055 (2131)
T KOG4369|consen 1013 LLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ 1055 (2131)
T ss_pred             hhCCccceecccCCCCcccchhccCCccccchHHhhcccChhh
Confidence                       33455555555555555555555555555543

>KOG4369|consensus

Probab=99.75  E-value=2.1e-18  Score=146.29  Aligned_cols=203  Identities=31%  Similarity=0.365  Sum_probs=172.4

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCcc-CCCCC
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK-TRTNS  110 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~  110 (247)
                      .+-.|+|-.||..|+.+.+++|+.+         +......|..|.+++-.|+..|+..+++.|+++.++++.+ |+.+.
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~r---------ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkd  825 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVR---------GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKD  825 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHh---------cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccC
Confidence            4456899999999999999999987         3445667788999999999999999999999998888764 56788


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCcccc--CCCCCcHHHHHHHhCCH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRK--SSKGNTALHDCAEAGSI  188 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~~t~l~~a~~~~~~  188 (247)
                      |+|.+||..|+.+++++|+..|++-..++....||+.+|...|.++++..|+..|..++.+  .+.|-.||+.|.-.|..
T Consensus       826 t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~  905 (2131)
T KOG4369|consen  826 TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ  905 (2131)
T ss_pred             ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999777665  45688899999999999


Q ss_pred             HHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhh
Q psy599          189 EILKLLLSHGARMDV--DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALEL  243 (247)
Q Consensus       189 ~~i~~Ll~~g~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  243 (247)
                      ...+.|++.|.+++.  .....|+|.+|+-.|+.|++.+||...+....+..-+++.
T Consensus       906 ~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltp  962 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTP  962 (2131)
T ss_pred             HHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcc
Confidence            999999999988875  4556777778888888888888877766666555555544

>KOG3676|consensus

Probab=99.74  E-value=8.7e-17  Score=133.09  Aligned_cols=167  Identities=22%  Similarity=0.265  Sum_probs=121.5

Q ss_pred             HHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCcccc-ccccccccCcCCCCHHHHHHHcCCH
Q psy599           11 HYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEET-GAVMFDHETVEGAPPLWCAAAAGHL   89 (247)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~t~l~~A~~~~~~   89 (247)
                      ....+++..++-.-.+..+-.+.|+|+||+|+.+.+.++|++|++. +++++.. .+..+...|..+..           
T Consensus       161 la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~r-----------  228 (782)
T KOG3676|consen  161 LARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASR-----------  228 (782)
T ss_pred             HHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccc-----------
Confidence            3444444444443444455577899999999999999999999987 3443322 22333333321111           


Q ss_pred             HHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCC--
Q psy599           90 PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD--  167 (247)
Q Consensus        90 ~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--  167 (247)
                              +..+..-.-..|+.||..|+..++.+++++|++++++++.+|..|+|.||..+..-..+|...++++|++  
T Consensus       229 --------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l  300 (782)
T KOG3676|consen  229 --------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANAL  300 (782)
T ss_pred             --------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence                    2222233345688888888888888888888888888888888888888888888888888888888888  


Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q psy599          168 MNRKSSKGNTALHDCAEAGSIEILKLLLSH  197 (247)
Q Consensus       168 ~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~  197 (247)
                      ...+|..|.|||..|++.|+.++.+.+++.
T Consensus       301 ~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  301 EHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            778888888999999999999988888887

>KOG4214|consensus

Probab=99.71  E-value=1.2e-16  Score=97.34  Aligned_cols=103  Identities=26%  Similarity=0.337  Sum_probs=86.7

Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ..+.|++.+|.++-|+.....|.+++..- .|++|+|+|+..|+.+++++|+..|++++.+|+.|.|||..|+..|+.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            34678888999999988888887776543 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHHHHH
Q psy599          191 LKLLLSHGARMDV-DSYGMTPLLAA  214 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l~~A  214 (247)
                      |++|+++|++..+ ...|.+.+..+
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999887 55566655433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=2.5e-15  Score=112.83  Aligned_cols=127  Identities=34%  Similarity=0.481  Sum_probs=99.0

Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh-----HHHHHHHHhcCC---CccccCCCC
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH-----YRIVKYLLSLNA---DMNRKSSKG  175 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~---~~~~~~~~~  175 (247)
                      ..+..+.++++.++..+..+++.+++..+.+++.++..|.||+|.|+..++     .++++.|++.|.   ....++..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            344456677778777777777777777777777777788888888888777     788888888877   455567888


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          176 NTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       176 ~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      .||||+|+..|..++++.|++.|++++. +..|.|+++.|+..++.++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            8888888888888888888888887776 677888888888888888888888755

>KOG4214|consensus

Probab=99.64  E-value=2.6e-15  Score=91.54  Aligned_cols=103  Identities=26%  Similarity=0.384  Sum_probs=94.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHH
Q psy599           79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV  158 (247)
Q Consensus        79 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  158 (247)
                      -+.+++++|.++-++..+..|.+++..- .|++|||+|+..|+.+++++|+..|++++.+|+.|-|||..|+..|..+++
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4678999999999999999998887765 889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccCCCCCcHHHHH
Q psy599          159 KYLLSLNADMNRKSSKGNTALHDC  182 (247)
Q Consensus       159 ~~Ll~~~~~~~~~~~~~~t~l~~a  182 (247)
                      ++|++.|++...+..+|.+.+..+
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhc
Confidence            999999999998888887766544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=8.2e-15  Score=110.05  Aligned_cols=129  Identities=40%  Similarity=0.567  Sum_probs=121.2

Q ss_pred             cccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCC-----hHHHHHHHHCCC---CcccCCCC
Q psy599           70 DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH-----FGVVKYLVEHGA---DFEVSNRH  141 (247)
Q Consensus        70 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~Ll~~~~---~~~~~~~~  141 (247)
                      ...+..+.++++.++..+..+++++++..|.+++.++..|.|++|+|+..++     .++++.|++.+.   ..+.++..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3344568899999999999999999999999999999999999999999999     999999999999   56666999


Q ss_pred             CCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q psy599          142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG  198 (247)
Q Consensus       142 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g  198 (247)
                      |.||+|+|+..|+.++++.+++.|.+++.++..|.|+++.|+..+..+++..+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999976

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=6.5e-14  Score=119.97  Aligned_cols=105  Identities=30%  Similarity=0.402  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHH
Q psy599           79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV  158 (247)
Q Consensus        79 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  158 (247)
                      .|+.|+..|+.++++.|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            46777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhc-------CCCccccCCCCCcHHHHHH
Q psy599          159 KYLLSL-------NADMNRKSSKGNTALHDCA  183 (247)
Q Consensus       159 ~~Ll~~-------~~~~~~~~~~~~t~l~~a~  183 (247)
                      ++|+++       +++.+..+..|.+|+..+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            888877       6777777777777766443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=3e-14  Score=81.61  Aligned_cols=53  Identities=49%  Similarity=0.743  Sum_probs=24.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Q psy599          175 GNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI  227 (247)
Q Consensus       175 ~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll  227 (247)
                      |.||||+|+..|+.+++++|+++|++++. +..|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            34555555555555555555555555543 445555555555555555555543

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=6.3e-14  Score=120.06  Aligned_cols=105  Identities=31%  Similarity=0.414  Sum_probs=94.5

Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ..|+.|+..|+.+.++.|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCCCC-CCCCCCHHHHHH
Q psy599          191 LKLLLSH-------GARMDV-DSYGMTPLLAAA  215 (247)
Q Consensus       191 i~~Ll~~-------g~~~~~-~~~g~t~l~~A~  215 (247)
                      +++|+++       |++.+. +..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999       777765 454655554433

>KOG0515|consensus

Probab=99.53  E-value=4.8e-14  Score=111.74  Aligned_cols=116  Identities=30%  Similarity=0.394  Sum_probs=101.1

Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHH
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK  192 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~  192 (247)
                      |.-|+..|-+++|+..+..-.|+...+..|-|+||.|++.|+.++|++|++.|+++|..|.+||||||+|+..+++.+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            35567789999999999888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCC--CCCCCCHHHHHH--HcCCHHHHHHHHh
Q psy599          193 LLLSHGARMDV--DSYGMTPLLAAA--VVGHQHIVEYLIG  228 (247)
Q Consensus       193 ~Ll~~g~~~~~--~~~g~t~l~~A~--~~~~~~~~~~Ll~  228 (247)
                      .|++.|+-+-.  -..+.|+..-+-  ..|...+.+||..
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999987753  566778876554  4577888888874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=3.9e-14  Score=81.11  Aligned_cols=54  Identities=44%  Similarity=0.640  Sum_probs=33.6

Q ss_pred             CCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q psy599          142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL  195 (247)
Q Consensus       142 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll  195 (247)
                      |.||+|.|+..|+.+++++|++.|.+++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456777777777777777777777777767777777777777777777777664

...

>KOG1710|consensus

Probab=99.53  E-value=1.5e-13  Score=101.30  Aligned_cols=120  Identities=26%  Similarity=0.294  Sum_probs=109.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCccc-CCCCCCCHHHHHHHcCh
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV-SNRHGHTCLMIACYKGH  154 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~  154 (247)
                      ..++|.-++..|..+-+..|++.--.++.+|..|.++|..|+..|+.++++.|++.|+++|- .+..+.||||+|+.+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            45788999999999999999987667899999999999999999999999999999999975 45578999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q psy599          155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL  195 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll  195 (247)
                      .++.+.|++.|+.....|.-|+|+-.+|+.-|+.++|..+=
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            99999999999999999999999999999999999888764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.52  E-value=1.9e-14  Score=82.82  Aligned_cols=53  Identities=43%  Similarity=0.576  Sum_probs=21.7

Q ss_pred             HhcC-CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHH
Q psy599          162 LSLN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA  214 (247)
Q Consensus       162 l~~~-~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A  214 (247)
                      ++++ .+++.+|..|.||||+|+..|+.+++++|++.|++++. +..|+||+++|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4444 55566666666666666666666666666666666665 66666666654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=5.7e-14  Score=80.82  Aligned_cols=54  Identities=41%  Similarity=0.569  Sum_probs=21.7

Q ss_pred             HHCC-CCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy599          129 VEHG-ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDC  182 (247)
Q Consensus       129 l~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  182 (247)
                      ++++ .+++..|..|.||||.|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            3444 55566666666666666666666666666666666666666666666654

>KOG0515|consensus

Probab=99.45  E-value=5.2e-13  Score=105.97  Aligned_cols=118  Identities=27%  Similarity=0.334  Sum_probs=103.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHH
Q psy599           79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV  158 (247)
Q Consensus        79 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  158 (247)
                      .|.-|+..|-+++|+..+..-.++...+..|.|+||-|+..|++++|++|+++|+++|..|.+||||||+|+..++..++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            35567888999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcccc-CCCCCcHHHHHH--HhCCHHHHHHHHH
Q psy599          159 KYLLSLNADMNRK-SSKGNTALHDCA--EAGSIEILKLLLS  196 (247)
Q Consensus       159 ~~Ll~~~~~~~~~-~~~~~t~l~~a~--~~~~~~~i~~Ll~  196 (247)
                      +.|.+.|+.+-.. -.++.|+...+-  ..|..+|.+||..
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999877443 235778877654  4578889999963

>KOG1710|consensus

Probab=99.45  E-value=1.1e-12  Score=96.70  Aligned_cols=119  Identities=31%  Similarity=0.385  Sum_probs=108.5

Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccc-cCCCCCcHHHHHHHhCC
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR-KSSKGNTALHDCAEAGS  187 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~  187 (247)
                      -..+|.-++-.+..+-...|+...-.++.+|.+|.|+|..|+..|+.++++.|++.|+|+|. .+..+.||||.|+-.|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            35689999999999999999987556889999999999999999999999999999999975 46678899999999999


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI  227 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll  227 (247)
                      .++.+.|++.|+.... |+-|+|+-..|+--|+-++|..+-
T Consensus        92 ~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   92 QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999986 999999999999999999987654

>KOG0782|consensus

Probab=98.97  E-value=3.8e-09  Score=85.28  Aligned_cols=116  Identities=25%  Similarity=0.344  Sum_probs=100.3

Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCC--ccccCCCCCcHHHHHHHhCCHHH
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD--MNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      +..|+..+.+--++-....|.+.-.++....+.||+|+..|+-++++|++++|..  ++..+..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3445555555555566667778888888889999999999999999999999874  46778889999999999999999


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh
Q psy599          191 LKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG  228 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~  228 (247)
                      .++|++.|+.+.. +..|.||-.-|-..++.+++-+|-.
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            9999999999987 9999999999999999999998864

>KOG0783|consensus

Probab=98.95  E-value=5.2e-10  Score=93.79  Aligned_cols=131  Identities=24%  Similarity=0.255  Sum_probs=90.7

Q ss_pred             CCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCC-CCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHH
Q psy599          102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR-HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH  180 (247)
Q Consensus       102 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  180 (247)
                      .+..|..|++++|.++..+...+++||+++|+++..+|. .|+||||.|+..|+++++-.|+++|..+..+|+.|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            566778899999999999999999999999999888886 5889999999999999999999999888889999999988


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCCCC---CCHHHHHH--HcCCHHHHHHHHhcChhhhh
Q psy599          181 DCAEAGSIEILKLLLSHGARMDVDSYG---MTPLLAAA--VVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       181 ~a~~~~~~~~i~~Ll~~g~~~~~~~~g---~t~l~~A~--~~~~~~~~~~Ll~~g~~~~~  235 (247)
                      ..++-...++.- -.+.  ..+.-.+|   ...|-.+-  ...+++.|.+|-..|....+
T Consensus       125 ~~~r~~~~~i~~-~~d~--pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~q  181 (1267)
T KOG0783|consen  125 FLSRVLSSTIHP-VLDL--PNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQ  181 (1267)
T ss_pred             HHhhcccccccc-ccCC--ccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHH
Confidence            766532222110 0000  00111111   11122222  22368888888877776654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.6e-09  Score=53.25  Aligned_cols=28  Identities=57%  Similarity=0.866  Sum_probs=17.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy599          175 GNTALHDCAEAGSIEILKLLLSHGARMD  202 (247)
Q Consensus       175 ~~t~l~~a~~~~~~~~i~~Ll~~g~~~~  202 (247)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666554

>KOG0783|consensus

Probab=98.88  E-value=1.5e-09  Score=91.21  Aligned_cols=84  Identities=18%  Similarity=0.335  Sum_probs=79.2

Q ss_pred             cccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCC-CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHH
Q psy599           68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTR-TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL  146 (247)
Q Consensus        68 ~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  146 (247)
                      ..+.+|..|+|+||.++..+..++++||+++|+++..+|+ .|+||||-|+..|+++++..|+.+|.....+|+.|.+||
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence            3567788999999999999999999999999999999985 699999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy599          147 MIACY  151 (247)
Q Consensus       147 ~~a~~  151 (247)
                      ...++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            99887

>KOG0506|consensus

Probab=98.88  E-value=3.7e-09  Score=83.45  Aligned_cols=91  Identities=27%  Similarity=0.332  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcC
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLMIACYKG  153 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~  153 (247)
                      .+...+.+|++.|....++.+.-.|.+.+.+|.+.+|+||.|+..|+.+++++|++. +.+++.+|++|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            445566777777777777777777777777777777777777777777777777753 5667777777777777777777


Q ss_pred             hHHHHHHHHhcC
Q psy599          154 HYRIVKYLLSLN  165 (247)
Q Consensus       154 ~~~~~~~Ll~~~  165 (247)
                      +.+++++|.+.-
T Consensus       585 h~~v~k~L~~~~  596 (622)
T KOG0506|consen  585 HKEVVKLLEEAQ  596 (622)
T ss_pred             cHHHHHHHHHHh
Confidence            777777776553

>KOG0782|consensus

Probab=98.87  E-value=1.3e-08  Score=82.31  Aligned_cols=119  Identities=22%  Similarity=0.326  Sum_probs=103.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCC--cccCCCCCCCHHHHHHHcChHHH
Q psy599           80 LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD--FEVSNRHGHTCLMIACYKGHYRI  157 (247)
Q Consensus        80 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~  157 (247)
                      +.-|+..+.+--++.....|.+.-.++.+..+.||+|+..|+-++|+++++++..  .+..+..|+|+||-|++.++-.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            3455556665556666677888888888889999999999999999999999864  46778899999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q psy599          158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG  198 (247)
Q Consensus       158 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g  198 (247)
                      +.+|.+.|+.+...|..|.||-.-|-+.|..++..||-.+.
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999999999999999999999999997653

>KOG0818|consensus

Probab=98.87  E-value=1.4e-08  Score=80.59  Aligned_cols=87  Identities=38%  Similarity=0.420  Sum_probs=60.2

Q ss_pred             HHHHHHcChHHHHHHHHhcCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHH
Q psy599          146 LMIACYKGHYRIVKYLLSLNADMNRKS-SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIV  223 (247)
Q Consensus       146 l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~  223 (247)
                      ||..++.++.+..-.|+..|++++..+ ..|.||||.|++.|+..-+++|+-+|+++.. +..|+||+.+|-..|+-++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            666667777776666667777766554 3467777777777777777777777777765 77777777777777777777


Q ss_pred             HHHHhcChh
Q psy599          224 EYLIGLNIV  232 (247)
Q Consensus       224 ~~Ll~~g~~  232 (247)
                      +-|++.-+.
T Consensus       217 eRl~e~~y~  225 (669)
T KOG0818|consen  217 ERLVEIQYE  225 (669)
T ss_pred             HHHHHHHHH
Confidence            766654443

>KOG0818|consensus

Probab=98.83  E-value=2.5e-08  Score=79.31  Aligned_cols=86  Identities=22%  Similarity=0.269  Sum_probs=70.8

Q ss_pred             hHHHHHhcCChHHHHHHHHCCCCcccCCC-CCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          112 PLRAACFDGHFGVVKYLVEHGADFEVSNR-HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      -||.+++.|+.+..-.|+..|+++|+.+. .|.||||.|+..|+.-.++.|+-+|+++...|.+|.||+.+|-..|+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            37888888888888888888888887665 58888888888888888888888888888888888888888888888777


Q ss_pred             HHHHHHc
Q psy599          191 LKLLLSH  197 (247)
Q Consensus       191 i~~Ll~~  197 (247)
                      .+.|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            7776644

>KOG0506|consensus

Probab=98.82  E-value=5.8e-09  Score=82.40  Aligned_cols=94  Identities=26%  Similarity=0.368  Sum_probs=78.1

Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      ++...+.+|++.|.+..++.+.-.|.+++.+|.+.+|+||.|+..|..+++++|++. +++++.+|..|+|||.-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            345667888888888888888888888888888888899988888888888888865 7788888888888888888888


Q ss_pred             CHHHHHHHHHcCCCC
Q psy599          187 SIEILKLLLSHGARM  201 (247)
Q Consensus       187 ~~~~i~~Ll~~g~~~  201 (247)
                      +.+++++|.+.....
T Consensus       585 h~~v~k~L~~~~~~y  599 (622)
T KOG0506|consen  585 HKEVVKLLEEAQYPY  599 (622)
T ss_pred             cHHHHHHHHHHhccc
Confidence            888888888775433

>KOG0705|consensus

Probab=98.78  E-value=3.4e-08  Score=79.91  Aligned_cols=90  Identities=28%  Similarity=0.386  Sum_probs=69.7

Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcc----cCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFE----VSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~----~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      |.-|+...+...+-.|+.+|....    ..+..|.|+||+||..|+..+...|+-+|+++..+|..|+|+|.+|-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            344555566677777888775432    2344678888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCCCC
Q psy599          189 EILKLLLSHGARMD  202 (247)
Q Consensus       189 ~~i~~Ll~~g~~~~  202 (247)
                      +++..|+++|...+
T Consensus       708 ec~d~llq~gcp~e  721 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHcCCCcc
Confidence            88888888887654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.78  E-value=1.4e-08  Score=49.85  Aligned_cols=28  Identities=54%  Similarity=0.922  Sum_probs=17.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCC
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHGAKVN  103 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~  103 (247)
                      |.||||+|+..|+.+++++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666554

>KOG3609|consensus

Probab=98.77  E-value=5.9e-08  Score=82.10  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTP  112 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  112 (247)
                      .+.--+..|++.|+...++.+++....     .....+..|.-|+++++.|+.+.+.++.++|++.+...       ..+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~-----~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdA   91 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAV-----SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDA   91 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccc-----cccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chH
Confidence            344557788888888888888886433     13445667778888888888888888888888876543       347


Q ss_pred             HHHHHhcCChHHHHHHHHCCCC
Q psy599          113 LRAACFDGHFGVVKYLVEHGAD  134 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~  134 (247)
                      |.+|+..|..+.++.++.+...
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~  113 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVD  113 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccc
Confidence            8888888888888888876433

>KOG3609|consensus

Probab=98.71  E-value=7e-08  Score=81.65  Aligned_cols=121  Identities=21%  Similarity=0.278  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhC----CCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHG----AKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY  151 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  151 (247)
                      +.-....|+.+|+...++..++..    .++|..|.-|.++++.|+.+.+.++.++|+++....       ..++.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            344567889999999988887642    457788888999999999999999999999886554       457888999


Q ss_pred             cChHHHHHHHHhcCCCcc----------ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC
Q psy599          152 KGHYRIVKYLLSLNADMN----------RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV  203 (247)
Q Consensus       152 ~~~~~~~~~Ll~~~~~~~----------~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~  203 (247)
                      .+..+.++.++.+.....          ..-..+.||+..|+..++.||++.|+++|+.+..
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            999999999987643321          1223456788888888888888888888877764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.71  E-value=3.7e-08  Score=49.81  Aligned_cols=31  Identities=45%  Similarity=0.800  Sum_probs=21.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCCccC
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT  106 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  106 (247)
                      |.||||+|+..|+.+++++|+++|++++.++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            6677777777777777777777777766654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.69  E-value=7.5e-08  Score=77.31  Aligned_cols=87  Identities=25%  Similarity=0.354  Sum_probs=67.9

Q ss_pred             hhHHHHHhcCChHHHHHHH--HCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          111 TPLRAACFDGHFGVVKYLV--EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      .|+|+++.....+-+...+  +....++.+|..|+||||+|+.-|+.+.++.|+..|+++..+|..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            3578887777766554433  23345677888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHc
Q psy599          189 EILKLLLSH  197 (247)
Q Consensus       189 ~~i~~Ll~~  197 (247)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777766

>KOG0522|consensus

Probab=98.68  E-value=8.7e-08  Score=76.95  Aligned_cols=113  Identities=20%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHH--hCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChH
Q psy599           78 PPLWCAAAAGHLPIVQFLVE--HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY  155 (247)
Q Consensus        78 t~l~~A~~~~~~~~~~~Ll~--~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  155 (247)
                      .++|+++.....+-+...+.  ....++.+|..|.||||.|++.|+.+.+..|+..++++..++..|++++|.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            46899988877665554333  3456788888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q psy599          156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR  200 (247)
Q Consensus       156 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~  200 (247)
                      +++..++.+.-.          ---.-...+...++..+.+.+-.
T Consensus       102 q~i~~vlr~~~~----------q~~~~~~~~~p~ll~~l~~~~DF  136 (560)
T KOG0522|consen  102 QIITEVLRHLKY----------QAWEKWERRLPRLLAKLSEMPDF  136 (560)
T ss_pred             HHHHHHHHHhHH----------HHHHHHHhcchHHHHHHHhCccc
Confidence            888777654110          00112334566777777776543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=5.5e-08  Score=49.16  Aligned_cols=28  Identities=54%  Similarity=0.850  Sum_probs=15.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy599          175 GNTALHDCAEAGSIEILKLLLSHGARMD  202 (247)
Q Consensus       175 ~~t~l~~a~~~~~~~~i~~Ll~~g~~~~  202 (247)
                      |.||||+|+..|+.+++++|+++|++++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            4555555555555555555555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705|consensus

Probab=98.62  E-value=2e-07  Score=75.67  Aligned_cols=91  Identities=25%  Similarity=0.326  Sum_probs=79.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCC----ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh
Q psy599           79 PLWCAAAAGHLPIVQFLVEHGAKVN----SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH  154 (247)
Q Consensus        79 ~l~~A~~~~~~~~~~~Ll~~~~~~~----~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  154 (247)
                      .|..|+...+...+-.|+.+|....    ..+.+|.|+||.|++.|++.+.++|+=+|+++..+|..|+|+|.+|...|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            4667777788888889999886432    334568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcc
Q psy599          155 YRIVKYLLSLNADMN  169 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~  169 (247)
                      .+++..|+.+|+...
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999998643

>KOG2384|consensus

Probab=98.37  E-value=1.1e-06  Score=61.62  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             CCcccCCCCCCCHHHHHHHcChHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC
Q psy599          133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM  201 (247)
Q Consensus       133 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~  201 (247)
                      .++|.+|..|+|++++|+..|+.+.+.||+.+| +.+...|..+.+.+.+|-+.|..+++..|.+.-.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            456667777777777777777777777777777 566777777777777777777777777777664443

>KOG0511|consensus

Probab=98.37  E-value=9.1e-07  Score=68.46  Aligned_cols=73  Identities=25%  Similarity=0.319  Sum_probs=60.1

Q ss_pred             HHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHc
Q psy599          145 CLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVV  217 (247)
Q Consensus       145 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~  217 (247)
                      -+..||+.|+.+.+++|++.|+++|..|.-..+||.+|+-.|+..++++|+++|+-..-+.....-.|+++..
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaLn  111 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGALN  111 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhhh
Confidence            4667999999999999999999999999888899999999999999999999998877654444445555554

>KOG0511|consensus

Probab=98.24  E-value=7.8e-06  Score=63.47  Aligned_cols=75  Identities=36%  Similarity=0.499  Sum_probs=51.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh
Q psy599           79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH  154 (247)
Q Consensus        79 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  154 (247)
                      -|..|++.|..+.++.|++.|.++|..|.+..+||.+|+..|+.+++++|+++|+--..-.-.|..+ |+++.+.+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhHH
Confidence            4677788888888888888888888888877888888888888888888888776443333344443 44444433

>KOG0521|consensus

Probab=98.19  E-value=3.8e-06  Score=72.94  Aligned_cols=85  Identities=31%  Similarity=0.359  Sum_probs=64.2

Q ss_pred             CCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          107 RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       107 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      ..|.+++|.|+..+...++++|+++|.+++..+..|++|+|.+...|....+..++++|++.+..+..|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            45667778888888888888888887777777777888888888888877777777777777777777888888777764


Q ss_pred             CHHHH
Q psy599          187 SIEIL  191 (247)
Q Consensus       187 ~~~~i  191 (247)
                      +.+++
T Consensus       734 ~~d~~  738 (785)
T KOG0521|consen  734 NADIV  738 (785)
T ss_pred             cccHH
Confidence            44433

>KOG0521|consensus

Probab=98.19  E-value=2.3e-06  Score=74.33  Aligned_cols=87  Identities=36%  Similarity=0.413  Sum_probs=79.4

Q ss_pred             CCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcC
Q psy599          140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVG  218 (247)
Q Consensus       140 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~  218 (247)
                      ..|.|++|.|+..+...+++.|++.|.+++.+|..|.+|+|.+...|+...+..++++|++.+. +..|.+|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            4578999999999999999999999999999999999999999999999999999999999997 899999999998876


Q ss_pred             CHHHHHHH
Q psy599          219 HQHIVEYL  226 (247)
Q Consensus       219 ~~~~~~~L  226 (247)
                      +.+++=++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            66655443

>KOG0520|consensus

Probab=98.16  E-value=4.1e-06  Score=72.81  Aligned_cols=127  Identities=19%  Similarity=0.179  Sum_probs=80.7

Q ss_pred             ccCcCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy599           71 HETVEGAPPLWCAAAAGHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA  149 (247)
Q Consensus        71 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  149 (247)
                      .....|.+.+|.++..+....++.+++- +......+.+|...+|.++..|..=.+..+.-.+..++++|..|+||||+|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            3345677777777777777777777764 555555666677777775444433333333345666777777777777777


Q ss_pred             HHcChHHHHHHHHhcCC------CccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q psy599          150 CYKGHYRIVKYLLSLNA------DMNRKSSKGNTALHDCAEAGSIEILKLLLSH  197 (247)
Q Consensus       150 ~~~~~~~~~~~Ll~~~~------~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~  197 (247)
                      ...|...++..|++.|.      ++......|.|+-..|-..|...+..+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            77777777777775543      2333444567777777777766666666543

>KOG2384|consensus

Probab=98.13  E-value=1.2e-05  Score=56.48  Aligned_cols=69  Identities=22%  Similarity=0.286  Sum_probs=59.0

Q ss_pred             CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCC-CCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Q psy599           99 GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD  167 (247)
Q Consensus        99 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  167 (247)
                      +.++|.+|..|+|+++.|+..|+.+.+.||+.+| +.+...+..+.++..+|-..|..+++..|.+.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4577888888999999999999999999999998 78888888899999999999999998888876443

>KOG0520|consensus

Probab=98.09  E-value=4.3e-06  Score=72.66  Aligned_cols=127  Identities=19%  Similarity=0.119  Sum_probs=101.2

Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDC  182 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  182 (247)
                      ...-.|.+.+|.+...+..-.++.+++- +......+..+.-.+|+++..|..=.+..+.-.|..++.+|..|+||||+|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            3345688999999999999999988885 666666777888888885444443333333345888999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCC-------CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          183 AEAGSIEILKLLLSHGARMDV-------DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       183 ~~~~~~~~i~~Ll~~g~~~~~-------~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      ...|...++..|.+.|++...       ...|.|+..+|...|+..+.-+|-+.-
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~  703 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKA  703 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhH
Confidence            999999999999988877642       345899999999999999999998773

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.62  E-value=0.0012  Score=46.52  Aligned_cols=137  Identities=20%  Similarity=0.229  Sum_probs=96.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHH
Q psy599           79 PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV  158 (247)
Q Consensus        79 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  158 (247)
                      .+..|++++...+++..-+.....   -...++.+-.||+..+.++|+|+-..-.     -.+-.+.+..|....+.++.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~-----i~~~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLH-----IYNPEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccC-----CCCchhhhhhhhhccchhHH
Confidence            467789999999988775543311   2456788899999999999999965421     12235678889999998874


Q ss_pred             H----HHHhcCCCccccCC--CCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy599          159 K----YLLSLNADMNRKSS--KGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIG  228 (247)
Q Consensus       159 ~----~Ll~~~~~~~~~~~--~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  228 (247)
                      .    .++.+...-...|.  .-..-|..|+..|-...+--.+++|.+++     .+.|..|+.+++..++.+++.
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-----~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-----IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-----HHHHHHHHHhhHHHHHHHhhc
Confidence            3    23333221111110  01134788999999999999999997664     388999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505|consensus

Probab=97.36  E-value=0.00046  Score=55.83  Aligned_cols=71  Identities=23%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             hHHHHHHHHhcCCCcc------ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Q psy599          154 HYRIVKYLLSLNADMN------RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL  226 (247)
Q Consensus       154 ~~~~~~~Ll~~~~~~~------~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~L  226 (247)
                      -++.+++|.+++...|      ..+....|+||+|+.+|..+++.++|+.|+|+.. |..|.||..++.   +.++=..+
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            3777888888876543      3445567899999999999999999999999887 999999998887   44444444


Q ss_pred             H
Q psy599          227 I  227 (247)
Q Consensus       227 l  227 (247)
                      +
T Consensus       480 ~  480 (591)
T KOG2505|consen  480 I  480 (591)
T ss_pred             H
Confidence            4

>smart00248 ANK ankyrin repeats

Probab=97.22  E-value=0.00083  Score=31.71  Aligned_cols=25  Identities=56%  Similarity=0.880  Sum_probs=12.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCC
Q psy599          175 GNTALHDCAEAGSIEILKLLLSHGA  199 (247)
Q Consensus       175 ~~t~l~~a~~~~~~~~i~~Ll~~g~  199 (247)
                      +.||+|+|+..+..++++.|+++|.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3445555555555555555555444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.11  E-value=0.012  Score=41.71  Aligned_cols=138  Identities=13%  Similarity=0.080  Sum_probs=92.8

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHH
Q psy599           36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRA  115 (247)
Q Consensus        36 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  115 (247)
                      ..|.-|++++.+.++++.-+..            ...-....+.+-.|++..+.++++|+-+.-.-.     .-.+.+..
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L------------~~~~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdI  110 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDL------------ENERYLNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDI  110 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHh------------hcchhHHHHHHHHHHHHccccHHHHHhhccCCC-----Cchhhhhh
Confidence            4678899999999999887641            111134667889999999999999994432222     22345678


Q ss_pred             HHhcCChHHHH----HHHHCCCCcccCCC--CCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHH
Q psy599          116 ACFDGHFGVVK----YLVEHGADFEVSNR--HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE  189 (247)
Q Consensus       116 a~~~~~~~~~~----~Ll~~~~~~~~~~~--~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  189 (247)
                      |....+..+..    ++.++...-...+.  .-..-+..|+..|-.+.+--.+++|.+++.      +.|..|+..+...
T Consensus       111 A~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRk  184 (192)
T PF03158_consen  111 AFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRK  184 (192)
T ss_pred             hhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHH
Confidence            88887776532    22222111100000  001235678999999998888899888754      7899999999999


Q ss_pred             HHHHHHH
Q psy599          190 ILKLLLS  196 (247)
Q Consensus       190 ~i~~Ll~  196 (247)
                      ++.+++.
T Consensus       185 IL~yfi~  191 (192)
T PF03158_consen  185 ILDYFIR  191 (192)
T ss_pred             HHHHhhc
Confidence            9988764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.07  E-value=0.0097  Score=43.56  Aligned_cols=46  Identities=15%  Similarity=0.323  Sum_probs=34.2

Q ss_pred             HHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHh
Q psy599           37 PLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEH   98 (247)
Q Consensus        37 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~   98 (247)
                      .|..|+...+++-+.-++..              .  ..-.+++.+++..+..+++.+|+.+
T Consensus       156 sledAV~AsN~~~i~~~Vtd--------------K--kdA~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTD--------------K--KDAHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcc--------------h--HHHHHHHHHHhcccHHHHHHHHHhh
Confidence            47889999998888877753              0  1234678888888888888888874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=97.03  E-value=0.0011  Score=31.26  Aligned_cols=28  Identities=32%  Similarity=0.332  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcChhh
Q psy599          206 YGMTPLLAAAVVGHQHIVEYLIGLNIVS  233 (247)
Q Consensus       206 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  233 (247)
                      .|.||+++|+..++.++++.|++.|...
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3789999999999999999999988754

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.86  E-value=0.0028  Score=51.51  Aligned_cols=64  Identities=23%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             ChHHHHHHHHCCCCccc------CCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q psy599          121 HFGVVKYLVEHGADFEV------SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE  184 (247)
Q Consensus       121 ~~~~~~~Ll~~~~~~~~------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  184 (247)
                      -.+.+++|.+++...|.      .+..-.|+||+|+..|.-+++.++++.|+|+..+|..|.||..++..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            46788888888766543      34446789999999999999999999999999999999999998873

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.44  E-value=0.018  Score=42.24  Aligned_cols=117  Identities=16%  Similarity=0.239  Sum_probs=74.7

Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCC----CCcHHHHHHHh-
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK----GNTALHDCAEA-  185 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~----~~t~l~~a~~~-  185 (247)
                      -.+--|+...+.+-+.-++...-       .-.+++-++..++..+++.+|+.. ......|--    +.--+.++... 
T Consensus       155 isledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhc
Confidence            34566677777766666554211       124567778888888888888753 111111110    11123343332 


Q ss_pred             -CCHHHHHHHHHcCC-CCCC----CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhh
Q psy599          186 -GSIEILKLLLSHGA-RMDV----DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       186 -~~~~~i~~Ll~~g~-~~~~----~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                       .+..+.++.+.+|. +++.    -..|.|-|+-|+++++.+++.+|+++|++...
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~k  282 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAISGK  282 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccccC
Confidence             36778888888884 5553    35689999999999999999999999997543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.24  E-value=0.033  Score=33.86  Aligned_cols=47  Identities=23%  Similarity=0.317  Sum_probs=29.7

Q ss_pred             CHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q psy599          144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH  197 (247)
Q Consensus       144 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~  197 (247)
                      ..+..|+..|+.++++.+++.+ .++      ...+..|+..-+.++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3466777777777777766543 111      3456777777777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.19  E-value=0.048  Score=33.15  Aligned_cols=48  Identities=19%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHC
Q psy599           77 APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH  131 (247)
Q Consensus        77 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  131 (247)
                      ...+..|+..|+.|+++.+++.+ .++      ...+..|+...+.++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34567777777777777777654 111      2457777777777777777764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0292|consensus

Probab=90.30  E-value=1.6  Score=39.01  Aligned_cols=162  Identities=17%  Similarity=0.154  Sum_probs=105.0

Q ss_pred             cchhHHHHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHH
Q psy599            4 LTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCA   83 (247)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A   83 (247)
                      |...||+.-.++++..+.+...++..-+.-|+.++-+--+.|..+++-.+++                   +..+-+..|
T Consensus       593 IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgypeiAL~FVk-------------------D~~tRF~La  653 (1202)
T KOG0292|consen  593 IDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPEIALHFVK-------------------DERTRFELA  653 (1202)
T ss_pred             echHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcceeeeeec-------------------Ccchheeee
Confidence            5678899999999999999999999989999999999999998887666653                   244556678


Q ss_pred             HHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCccc----------------------CCCC
Q psy599           84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV----------------------SNRH  141 (247)
Q Consensus        84 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~----------------------~~~~  141 (247)
                      ...|++++.-...+..-+.+...    ..-..|++.|+.++++...++--+++.                      ..++
T Consensus       654 Le~gnle~ale~akkldd~d~w~----rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D  729 (1202)
T KOG0292|consen  654 LECGNLEVALEAAKKLDDKDVWE----RLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRND  729 (1202)
T ss_pred             hhcCCHHHHHHHHHhcCcHHHHH----HHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhh
Confidence            88888887655555443333222    223567788888888888865333221                      1111


Q ss_pred             CCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHH--HHHhCCHHHHHHHHHc
Q psy599          142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHD--CAEAGSIEILKLLLSH  197 (247)
Q Consensus       142 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~--a~~~~~~~~i~~Ll~~  197 (247)
                      -.+-++.|...|+.+--..+++.         -|..||-+  |..+|..+..+.|.+.
T Consensus       730 ~~~~~qnalYl~dv~ervkIl~n---------~g~~~laylta~~~G~~~~ae~l~ee  778 (1202)
T KOG0292|consen  730 ATGQFQNALYLGDVKERVKILEN---------GGQLPLAYLTAAAHGLEDQAEKLGEE  778 (1202)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHh---------cCcccHHHHHHhhcCcHHHHHHHHHh
Confidence            22334555555554433323322         25566665  5557777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-24
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-19
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-23
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-23
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-23
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-22
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-22
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-19
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-22
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-22
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-21
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-20
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-07
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-19
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-11
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-18
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-18
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-17
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-18
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-18
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-18
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-18
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-18
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-07
1uoh_A	226	Human Gankyrin Length = 226		5e-16
1uoh_A	226	Human Gankyrin Length = 226		3e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-16
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-15
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-15
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-15
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-08
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		8e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-14
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-14
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-14
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		5e-14
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-09
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-13
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		7e-13
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-12
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-10
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-11
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-12
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-11
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-11
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-07
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-11
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		8e-11
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-11
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-10
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-10
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-10
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-10
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-09
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-09
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		4e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-09
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-09
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-09
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-09
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		8e-09
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		3e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		3e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-08
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-08
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		7e-08
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		5e-07
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		8e-07
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-07
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-06
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		2e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-05
1dc2_A	156	Solution Nmr Structure Of Tumor Suppressor P16ink4a		4e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-05
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		1e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		4e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		4e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		4e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		6e-05
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		6e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		7e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		4e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		6e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		7e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 73/125 (58%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
            G  PL  AA  GHL +V+ L+E GA VN+K +   TPL  A  +GH  VVK L+E GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
               +++G T L +A   GH  +VK LL   AD+N K   G T LH  A  G +E++KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 195 LSHGA 199
           L  GA
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
           TPL  A  +GH  VVK L+E GAD    +++G T L +A   GH  +VK LL   AD+N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           K   G T LH  A  G +E++KLLL  GA ++  D  G TPL  AA  GH  +V+ L+
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA  G+   V+ L+E+GA VN+      TPL  A  +GH  VVK L+  GAD    +  G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
            T L +A   GH  +VK LLS  AD N K S G T LH  AE G  E++KLLLS GA  +
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYL 226
             DS G TPL  A   G++ +V+ L
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G+   VK LL   AD+N   S G T LH  AE G  E++KLLLS GA  +  D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
           S G TPL  AA  GH+ +V+ L+
Sbjct: 68  SDGKTPLHLAAENGHKEVVKLLL 90

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA  G+   V+ L+E+GA VN+      TPL  A  +GH  VVK L+  GAD    +
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L  A   GH  +VK L+S  AD+N K S G T LH  AE G  E++KLL+S GA
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  DS G TPL  A   G++ +V+ L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G+   VK L+   AD+N   S G T LH  AE G  E++KLL+S GA ++  D
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
           S G TPL  AA  GH+ +V+ LI
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLI 90

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA AG    V+ L+ +GA VN+   T +TPL  A + GH  +V+ L++HGAD + S+  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
           +T L +A Y GH  IV+ LL   AD+N   S G T LH  A+ G +EI+++LL HGA ++
Sbjct: 81  YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
             D +G T    +   G++ + E L  LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N   + G T LH  A +G +EI+++LL HGA +D  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
            +G TPL  AA  GH  IVE L+
Sbjct: 78  VFGYTPLHLAAYWGHLEIVEVLL 100

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+K +   TPL  A  +GH  +V+ L++ GAD    +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           + G+T L +A  +GH  IV+ LL   AD+N K   G T LH  A  G +EI+++LL  GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  D +G TP   A   GH+ I E L
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N K   G T LH  A  G +EI+++LL  GA ++  D
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G TPL  AA  GH  IVE L+
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLL 88

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           LI A  NG+K+ V+ L+ E  ADV  + +        +G  PL  AA  GH  IV+ L+ 
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDS--------DGRTPLHYAAKEGHKEIVKLLIS 58
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
            GA VN+K     TPL  A  +GH  +VK L+  GAD    +  G T L  A  +GH  I
Sbjct: 59  KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI 118
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
           VK L+S  AD+N   S G T L    E G+ EI+KLL   G  ++
Sbjct: 119 VKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
           A  +G+   VK L+E+GAD   S+  G T L  A  +GH  IVK L+S  AD+N K S G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
            T LH  A+ G  EI+KLL+S GA ++  DS G TPL  AA  GH+ IV+ LI
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA  G+   V+ L+E+GA  N+      TPL  A  +GH  +VK L+  GAD    +  G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
            T L  A   GH  IVK LLS  AD N K S G T LH  AE G  EI+KLLLS GA  +
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYL 226
             DS G TPL  A   G++ IV+ L
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G+   VK LL   AD N   S G T LH  AE G  EI+KLLLS GA  +  D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
           S G TPL  AA  GH+ IV+ L+
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLL 90

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 32  FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
           + G TPL +A +    E+   L++   +          + E+V+G  PL  AA  GH  +
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGS---------ANAESVQGVTPLHLAAQEGHAEM 260
Query: 92  VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY 151
           V  L+   A  N   ++  TPL     +GH  V   L++HG   + + R G+T L +A +
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320
Query: 152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTP 210
            G+ ++VK+LL   AD+N K+  G + LH  A+ G  +I+ LLL +GA  + V S G TP
Sbjct: 321 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380
Query: 211 LLAAAVVGHQHIVEYL 226
           L  A  +G+  + + L
Sbjct: 381 LAIAKRLGYISVTDVL 396

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
           T L +A + GH  IVK LL   A  N  + K  T LH  A AG  E+ K LL + A+++ 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 204 DSYG-MTPLLAAAVVGHQHIVEYLIGLN 230
            +    TPL  AA +GH ++V+ L+  N
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENN 103

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+K +   TPL  A  +GH  +V+ L++ GAD    +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           + G+T L +A  +GH  IV+ LL   AD+N K   G T LH  A  G +EI+++LL  GA
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  D +G TP   A   G++ I E L
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N K   G T LH  A  G +EI+++LL  GA ++  D
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G TPL  AA  GH  IVE L+
Sbjct: 66  KDGYTPLHLAAREGHLEIVEVLL 88

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN++  +  TPL  A   GH  +V+ L++HGAD   ++
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           + G T L +A   GH  IV+ LL   AD+N   + G T LH  A+AG +EI+++LL +GA
Sbjct: 78  KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            ++  D +G T    +   G++ + E L  LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+K +   TPL  A  +GH  +V+ L++ GAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           + G+T L +A  +GH  IV+ LL   AD+N K   G T LH  A  G +EI+++LL  GA
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  D +G T    +   G++ + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N K   G T LH  A  G +EI+++LL  GA ++  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G TPL  AA  GH  IVE L+
Sbjct: 78  KDGYTPLHLAAREGHLEIVEVLL 100

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA AG    V+ L+ +GA VN+     STPL  A + GH  +V+ L++HGAD    +  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
            T L +A   GH  IV+ LL   AD+N + + G T LH  A+ G +EI+++LL HGA ++
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
             D +G T    +   G++ + E L  LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N    +G+T LH  A  G  EI+++LL HGA ++  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
           + G TPL  AA  GH  IVE L+
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLL 100

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA AG    V+ L+ +GA VN+      TPL     +GH  +++ L+++ AD   S++ G
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
            T L +A Y+GH  IV+ LL   AD+N    +G T LH  AE G +EI+++LL +GA ++
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
             D +G T    +   G++ + E L  LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N     G T LH     G +EI+++LL + A ++  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G TPL  AA  GH  IVE L+
Sbjct: 78  KSGWTPLHLAAYRGHLEIVEVLL 100

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AAAAG    V+ L+ +GA VN+      TPL  A  +G   +V+ L+++GAD   S+
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A Y GH  IV+ LL   AD+N     G T LH  A +G +EI+++LL HGA
Sbjct: 70  SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  D+ G+T    +   G + + E L
Sbjct: 130 DVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+   T  TPL  A   GH  +V+ L++HGAD + ++
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            +G T L +A   GH  IV+ LL   AD+N     G+T LH  A+ G +EI+++LL +GA
Sbjct: 78  VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 200 RMDV-DSYGMT 209
            ++  D +G T
Sbjct: 138 DVNAQDKFGKT 148

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD    +  G T L +A   GH  IV+ LL   AD++     G T LH  A 
Sbjct: 30  VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
            G +EI+++LL +GA ++  D  G TPL  AA  GH  IVE L+
Sbjct: 90  TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN++  +  TPL  A F+GH  +V+ L+++GAD    +
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A   GH  IV+ LL   AD+N    +G+T LH  A  G +EI+++LL +GA
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            ++  D +G T    +   G++ + E L  LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV  T  +        G  PL  AA  GHL IV+ L++
Sbjct: 18  LLEAARAGQDDEVRILMANG-ADVNATDWL--------GHTPLHLAAKTGHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           +GA VN+     +TPL  A  +GH  +V+ L++HGAD    +  G T L +A Y GH  I
Sbjct: 69  YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
           V+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA AG    V+ L+ +GA VN+      TPL  A   GH  +V+ L+++GAD    + +G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
            T L +A   GH  IV+ LL   AD+N K  +G T LH  A  G +EI+++LL +GA ++
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
             D +G T    +   G++ + E L  LN
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N     G+T LH  A+ G +EI+++LL +GA ++  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
           +YG TPL  AA  GH  IVE L+
Sbjct: 78  NYGATPLHLAADNGHLEIVEVLL 100

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV  T          +G  PL  AA+ GHL IV+ L++
Sbjct: 18  LLEAARAGQDDEVRILMANG-ADVNAT--------DNDGYTPLHLAASNGHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           +GA VN+   T  TPL  A   GH  +V+ L++HGAD    +  GHT L +A   GH  I
Sbjct: 69  NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
           V+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+      TPL  A  +GH  +V+ L+++GAD   S+
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A   GH  IV+ LL   AD+N   + G+T LH  A+ G +EI+++LL HGA
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  D +G T    +   G++ + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N   + G T LH  A  G +EI+++LL +GA ++  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G+TPL  AA  GH  IVE L+
Sbjct: 78  LTGITPLHLAAATGHLEIVEVLL 100

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 25  QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC-- 82
           Q  TK  +     L+ A  +G  E+V YL++  + D+E+        +TV  A P +C  
Sbjct: 2   QEETKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA------EDTVSAADPEFCHP 55
Query: 83  -------AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
                  A A   L  V      G  VN  ++  S+PL  A   G   ++  L++HGA+ 
Sbjct: 56  LCQCPKCAPAQKRLAKVPA---SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA 112
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
              N      L +AC +GH+++VK LL  NA  N+K   GNT L      G  E++ LLL
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 196 SHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
            HGA ++  ++ G T L  A +  H  +VE L+
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLL 205

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN++  T  TPL  A   GH  +V+ L+++GAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A  +GH  IV+ LL   AD+N   S G T LH  A+ G +EI+++LL +GA
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            ++  D +G T    +   G++ + E L  LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV  T A         G  PL  AA  GHL IV+ L++
Sbjct: 18  LLEAARAGQDDEVRILMANG-ADVNATDA--------SGLTPLHLAATYGHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           HGA VN+     STPL  A   GH  +V+ L++HGAD    +  G T L +A   GH  I
Sbjct: 69  HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
           V+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+   +  TPL  A   GH  +V+ L++HGAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A   GH  IV+ LL   AD+N   + G+T LH  A  G +EI+++LL HGA
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            ++  D +G T    +   G++ + E L  LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV  T A         G  PL  AA  GHL IV+ L++
Sbjct: 18  LLEAARAGQDDEVRILMANG-ADVNATDA--------SGLTPLHLAATYGHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           HGA VN+     STPL  A   GH  +V+ L++HGAD    +  G T L +A   GH  I
Sbjct: 69  HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
           V+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+   +  TPL  A   GH  +V+ L++HGAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A   GH  IV+ LL   AD+N   + G+T LH  A  G +EI+++LL HGA
Sbjct: 78  IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            ++  D +G T    +   G++ + E L  LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+      TPL  A + GH  +V+ L+++GAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A  +GH  +V+ LL   AD+N     G T LH  A  G +EI+++LL HGA
Sbjct: 78  SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            ++  D +G T    +   G++ + E L  LN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 69  FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
           F  E      PL  AA AGH+ I   LV+ GA +++ +    TPL  A  + H   VKYL
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 129 VEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTALHDCAEAGS 187
           ++ GA  +  +  G TCL +A  KGHY +V+YLLS    D+N +   G T +    E   
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG 228
           ++++KLLLS G+ +++ D+     L  AA  G   I E L+ 
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN++     TPL  A   GH  +V+ L+++GAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L +A  +GH  IV+ LL   AD+N   + G+T LH  A+ G +EI+++LL +GA
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  D +G T    +   G++ + E L
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
           L+ A   G    V+ L++  AD+N + + G+T LH  A  G +EI+++LL +GA ++ +D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G TPL  AA  GH  IVE L+
Sbjct: 78  FSGSTPLHLAAKRGHLEIVEVLL 100

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA AG    V+ L+ +GA VN+      TPL  A + GH  +V+ L+++GAD    +  G
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
            T L +A + GH  IV+ LL   AD+N K   G T LH  A  G +EI+++LL +GA ++
Sbjct: 81  STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 203 V-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
             D +G T    +   G++ + E L  LN
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEILQKLN 169

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
           L+ A   G    V+ L++  AD+N     G T LH  A  G +EI+++LL +GA ++  D
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
           + G TPL  AA  GH  IVE L+
Sbjct: 78  TLGSTPLHLAAHFGHLEIVEVLL 100

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 9/157 (5%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    AD     A  +DH    G  PL  AAA GHL IV+ L+ 
Sbjct: 6   LLEAARAGQDDEVRILMANG-AD-----ANAYDHY---GRTPLHMAAAVGHLEIVEVLLR 56
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           +GA VN+     +TPL  A   GH  +V+ L+++GAD    +  G T L +A Y GH  I
Sbjct: 57  NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
           V+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 117 VEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA  N+      TPL  A   GH  +V+ L+ +GAD    +
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            +G T L +A   GH  IV+ LL   AD+N K + G T L+  A  G +EI+++LL HGA
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            ++  D +G T    +  +G++ + E L
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VD 204
           L+ A   G    V+ L++  AD N     G T LH  A  G +EI+++LL +GA ++ VD
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
           + G TPL  AA +GH  IVE L+
Sbjct: 66  TNGTTPLHLAASLGHLEIVEVLL 88

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 26  MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA 85
           + T+      T L  AC  GH EIVE+L+        + G  + D +   G  PL  AA+
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA-GWSPLHIAAS 82
Query: 86  AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
           AG   IV+ L+  GA+VN+  +   TPL  A       +   L+E GA+ +  + +  T 
Sbjct: 83  AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 142
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS 205
           +  A  KG+ +++  LL   A  N + ++GNT LH   +   +E  KLL+S GA + +++
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 202
Query: 206 Y-GMTPLLAA 214
               TPL  A
Sbjct: 203 KEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +++   T L  AC  GH  IV++LL L   +N K   G + LH  A AG  EI+K LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           GA+++ V+  G TPL  AA      I   L+
Sbjct: 96  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 10/190 (5%)
Query: 26  MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA 85
           + T+      T L  AC  GH EIVE+L+        + G  + D +   G  PL  AA+
Sbjct: 33  LATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA-GWSPLHIAAS 83
Query: 86  AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
           AG   IV+ L+  GA+VN+  +   TPL  A       +   L+E GA+ +  + +  T 
Sbjct: 84  AGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 143
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS 205
           +  A  KG+ +++  LL   A  N + ++GNT LH   +   +E  KLL+S GA + +++
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 203
Query: 206 Y-GMTPLLAA 214
               TPL  A
Sbjct: 204 KEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +++   T L  AC  GH  IV++LL L   +N K   G + LH  A AG  EI+K LL  
Sbjct: 37  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           GA+++ V+  G TPL  AA      I   L+
Sbjct: 97  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 53/92 (57%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
            G  PL  AA  GHL +V+ L+E GA VN+K +   TPL  A  +GH  VVK L+E GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNA 166
               +++G T L +A   GH  +VK LL   A
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 52/89 (58%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
           TPL  A  +GH  VVK L+E GAD    +++G T L +A   GH  +VK LL   AD+N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           K   G T LH  A  G +E++KLLL  GA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 16  LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
           L+ R   +  + T+      T L  AC  GH EIVE+L+        + G  + D +   
Sbjct: 22  LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA- 72
Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G  PL  AA+AG   IV+ L+  GA VN+  +   TPL  A       +   L+E GA+ 
Sbjct: 73  GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
           +  + +  T +  A  KG+ ++V  LL   A  N + ++GNT LH   +   +E  K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 196 SHGARMDVDSY-GMTPLLAA 214
           + GA + +++    TPL  A
Sbjct: 193 TQGASIYIENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +++   T L  AC  GH  IV++LL L   +N K   G + LH  A AG  EI+K LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           GA ++ V+  G TPL  AA      I   L+
Sbjct: 96  GAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 16  LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
           L+ R   +  + T+      T L  AC  GH EIVE+L+        + G  + D +   
Sbjct: 22  LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--------QLGVPVNDKDDA- 72
Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G  PL  AA+AG   IV+ L+  GA VN+  +   TPL  A       +   L+E GA+ 
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
           +  + +  T +  A  KG+ ++V  LL   A  N + ++GNT LH   +   +E  K L+
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 196 SHGARMDVDSY-GMTPLLAA 214
           + GA + +++    TPL  A
Sbjct: 193 TQGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +++   T L  AC  GH  IV++LL L   +N K   G + LH  A AG  EI+K LL  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 198 GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           GA ++ V+  G TPL  AA      I   L+
Sbjct: 96  GAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 74  VEG--APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
           +EG  + PL  AA    + +V++L++HGA V++K +    PL  AC  GH+ V + LV+H
Sbjct: 42  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
           GA   V++    T L  A  KG Y I K LL   AD  +K+  GNT L D  + G  +I 
Sbjct: 102 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQ 160
Query: 192 KLLLSHGARMD 202
            LL    A +D
Sbjct: 161 DLLRGDAALLD 171

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
           T L  A       +V+YLL   AD++ K   G   LH+    G  E+ +LL+ HGA ++V
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
            D +  TPL  AA  G   I + L+
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLL 132

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 74  VEG--APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
           +EG  + PL  AA    + +V++L++HGA V++K +    PL  AC  GH+ V + LV+H
Sbjct: 40  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
           GA   V++    T L  A  KG Y I K LL   AD  +K+  GNT L D  + G  +I 
Sbjct: 100 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQ 158
Query: 192 KLLLSHGA 199
            LL    A
Sbjct: 159 DLLRGDAA 166

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
           T L  A       +V+YLL   AD++ K   G   LH+    G  E+ +LL+ HGA ++V
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
            D +  TPL  AA  G   I + L+
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLL 130

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 74  VEG--APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH 131
           +EG  + PL  AA    + +V++L++HGA V++K +    PL  AC  GH+ V + LV+H
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
           GA   V++    T L  A  KG Y I K LL   AD  +K+  GNT L D  + G  +I 
Sbjct: 98  GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKDGDTDIQ 156
Query: 192 KLLLSHGA 199
            LL    A
Sbjct: 157 DLLRGDAA 164

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
           T L  A       +V+YLL   AD++ K   G   LH+    G  E+ +LL+ HGA ++V
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
            D +  TPL  AA  G   I + L+
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLL 128

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 60/104 (57%)
Query: 106 TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
           ++  +TPL  A  +GH   VK L+  GAD    ++ G+T L +A   GH  IVK LL+  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMT 209
           AD+N +S  GNT  H   + G  EI+KLL + GA ++  S+G +
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSY-GMTPLLAAAVVGHQHIVEYLI--G 228
           S  GNT LH+ A+ G  E +K LLS GA ++  S  G TPL  AA  GH  IV+ L+  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 229 LNIVSRKEKIDALELL 244
            ++ +R +  +  E L
Sbjct: 66  ADVNARSKDGNTPEHL 81

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
           TPL++AC  G +  ++ LV+              + + +EG+  L  A     L I + L
Sbjct: 37  TPLMVACMLGMENAIDKLVENFDK---------LEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           +  G+ VN+K  +  TPL  +   G+  +  +L+EHGA+    N  G T L++A   G  
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            IVK LL L AD++ +   G TA       G  E++K+ 
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
           N +   N TPL  AC  G    +  LVE+    E  +  G T L+ A       I + LL
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM-DVDSYGMTPLLAAAVVGHQH 221
           S  +++N K   G T L      G  E+   LL HGA + D +  G TPL+ A+  G   
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 222 IVEYL--IGLNIVSR 234
           IV+ L  +G +I +R
Sbjct: 149 IVKKLLELGADISAR 163

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 104/240 (43%), Gaps = 36/240 (15%)
Query: 15  FLEARTHEEIQMVTKFKFGGA-----------TPLIMACRNGHKEIVEYLVKECKADVEE 63
            ++A  +E++ +V +   GGA           TPL  A +   ++IVE L++     V  
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-- 66
Query: 64  TGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG 123
                       GA P   AA AG + +++  +  GA VN       T    A   G   
Sbjct: 67  -------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 124 VVKYLVEHGA----------DFEVSNRHGHTCLMIACYKGHYRIVKYLLS-LNADMNRKS 172
            +K+L + GA          D E   + G T LM A  KGH  ++K LL  + AD+N   
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179
Query: 173 SKGNTALHDC---AEAGSIE-ILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           + G  AL      ++   +E I  LLL HGA ++V    G TPL+ A    H  +V+ L+
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           LI A +N   ++V+ L+        E GA +   E   G  PL  A       IV+ L+ 
Sbjct: 29  LIKAVQNEDVDLVQQLL--------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 80
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           HGA    + +  +TP   A   G   ++K  +  GAD    + +G T  M A   G  + 
Sbjct: 81  HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 140
Query: 158 VKYLLSLNADMN-RKSSK---------GNTALHDCAEAGSIEILKLLLSH-GARMDV-DS 205
           +K+L    A++N R+ +K         G TAL D AE G +E+LK+LL   GA ++  D+
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 200
Query: 206 YGMTPLLAAAVVGHQHIVEYLIGL 229
            G   L+ A +      VE +  L
Sbjct: 201 MGRNALIHALLSSDDSDVEAITHL 224

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV             +G  PL  AA   HL IV+ L++
Sbjct: 18  LLEAARAGQDDEVRILMANG-ADVNAN--------DRKGNTPLHLAADYDHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           HGA VN+     STPL  A   GH  +V+ L++HGAD    ++ G T   I+   G+  +
Sbjct: 69  HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
            + L  LN
Sbjct: 129 AEILQKLN 136

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 61/115 (53%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+  R  +TPL  A    H  +V+ L++HGAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
             G T L +A   GH  IV+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD   ++R G+T L +A    H  IV+ LL   AD+N   + G+T LH  A 
Sbjct: 30  VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            G +EI+++LL HGA ++  D +G T    +   G++ + E L  LN
Sbjct: 90  FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 102/237 (43%), Gaps = 45/237 (18%)
Query: 32  FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
           F      + AC +G  E V  L+        E GA + ++  V+G   L  A    ++ +
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLL--------ERGADI-NYANVDGLTALHQACIDDNVDM 88
Query: 92  VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI--- 148
           V+FLVE+GA +N        PL AA   G+  + +YL+  GA     N  G T L I   
Sbjct: 89  VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148
Query: 149 -------------------ACYKGHYRIV-----KYLLSLNADMNRKSSKGNTALHDCAE 184
                              A  K   RI+     ++L S + +  R +  G TALH  A 
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 185 AGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQH----IVEYLIGLNIVSR 234
            G  E+LKLL+   AR DV   D  G TPL AAA  G +     +VE L  +  V++
Sbjct: 209 KGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV      M D     G  PL  AA  GHL IV+ L++
Sbjct: 18  LLEATRAGQDDEVRILMANG-ADVN----AMDD----AGVTPLHLAAKRGHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           HGA VN+      TPL  A   GH  +V+ L+E+GAD    ++ G T   I+   G+  +
Sbjct: 69  HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
            + L  LN
Sbjct: 129 AEILQKLN 136

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 60/115 (52%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  A  AG    V+ L+ +GA VN+      TPL  A   GH  +V+ L++HGAD   S+
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
             G T L +A   GH  IV+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD    +  G T L +A  +GH  IV+ LL   AD+N   S G T LH  A 
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            G +EI+++LL +GA ++  D +G T    +   G++ + E L  LN
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV      M D     G  PL  AA  GHL IV+ L++
Sbjct: 18  LLEATRAGQDDEVRILMANG-ADVN----AMDD----AGVTPLHLAAKRGHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           HGA VN++     TPL  A   GH  +V+ L+E+GAD    ++ G T   I+   G+  +
Sbjct: 69  HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
            + L  LN
Sbjct: 129 AEILQKLN 136

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 59/115 (51%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  A  AG    V+ L+ +GA VN+      TPL  A   GH  +V+ L++HGAD    +
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
             G T L +A   GH  IV+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD    +  G T L +A  +GH  IV+ LL   AD+N +   G T LH  A 
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            G +EI+++LL +GA ++  D +G T    +   G++ + E L  LN
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           +G  PL  AA  GHL IV+ L+++GA VN++     TPL  A   GH  +V+ L++HGAD
Sbjct: 46  DGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
               ++ G T   I+   G+  + + L  LN
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD    +  G T L +A   GH  IV+ LL   AD+N + + G T LH  A 
Sbjct: 30  VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            G +EI+++LL HGA ++  D +G T    +   G++ + E L  LN
Sbjct: 90  RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
           T L  A   G    V+YL+++G+D  V +  G T L  AC  GH ++V+ LL   A +N 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGA-RMDVDSYGMTPL 211
              + ++ LHD A+ G ++I+KLLLS+GA R  V+ +G+ P+
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           L+ A R G  + V  L+    ADV      M D     G  PL  AA  GHL IV+ L++
Sbjct: 18  LLEATRAGQDDEVRILMANG-ADVN----AMDD----AGVTPLHLAAKRGHLEIVEVLLK 68
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
           HGA VN+      TPL  A   GH  +V+ L+E+GAD    ++ G T   I+   G+  +
Sbjct: 69  HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 158 VKYLLSLN 165
            + L  LN
Sbjct: 129 AEILQKLN 136

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 60/115 (52%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  A  AG    V+ L+ +GA VN+      TPL  A   GH  +V+ L++HGAD   S+
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
             G T L +A   GH  IV+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD    +  G T L +A  +GH  IV+ LL   AD+N     G T LH  A 
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            G +EI+++LL +GA ++  D +G T    +   G++ + E L  LN
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G  PL+ A A GHL IV+ L+++GA VN+      TPL  A F GH  + + L++HGAD 
Sbjct: 47  GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLN 165
              ++ G T   I+   G+  + + L  LN
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD    + +G T L +A   GH  IV+ LL   AD+N   + G T LH  A 
Sbjct: 30  VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
            G +EI ++LL HGA ++  D +G T    +   G++ + E L  LN
Sbjct: 90  IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
           AA AG    V+ L  +GA VN+      TPL  A   GH  +V+ L+++GAD   +   G
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            T L +A +  H  IV+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L  +GAD   ++  GHT L +A   GH  IV+ LL   AD+N   + G T LH  A 
Sbjct: 30  VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
           A  +EI+++LL HGA ++  D +G T    +   G++ + E L
Sbjct: 90  ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 61/115 (53%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN++ +   TPL  A  + H  +V+ L+++GAD    +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
             G T L +    GH  IV+ LL   AD+N +   G TA     + G+ ++ ++L
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
           L  A   G    V+ L+ +GAD    ++ G T L +A    H  IV+ LL   AD+N   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 173 SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
           + G T LH  A  G +EI+++LL HGA ++  D +G T    +   G++ + E L  LN
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
           +P+  A  +GH+  +  L+ +  A       +  DH +     PL  A   GHL  V+ L
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWA----VNIITADHVS-----PLHEACLGGHLSCVKIL 55
Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           ++HGA+VN  T    TPL  AC  G +  V  L++HGA  +  +    + +  A  +GH 
Sbjct: 56  LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHV 114
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAA 215
             V  L++   +++ K S   T L+   E      +K LL  GA ++      +PL A A
Sbjct: 115 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVA 174

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%)
Query: 108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
           ++ +P+  A   GH   ++ L+  G    +      + L  AC  GH   VK LL   A 
Sbjct: 2   SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           +N  ++  +T L +   +GS + + LLL HGA +  +S   +P+  AA  GH   V  LI
Sbjct: 62  VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 121

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 68  MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
           + +H   EG  PL  AAA G + +V+FL+++GA      +   + L  AC  G+  +VK 
Sbjct: 44  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 103
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
           L++ G D    + +G T L+ A +  H + VK LL   AD   ++  G  ++      G 
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 163
Query: 188 IEILKLLLSH 197
             + +++ SH
Sbjct: 164 RSVQQVIESH 173

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 68  MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
           + +H   EG  PL  AAA G + +V+FL+++GA      +   + L  AC  G+  +VK 
Sbjct: 28  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
           L++ G D    + +G T L+ A +  H + VK LL   AD   ++  G  ++      G 
Sbjct: 88  LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Query: 188 IEILKLLLSH 197
             + +++ SH
Sbjct: 148 RSVQQVIESH 157

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
           P+  AA  GH   ++ L+  G  VN  T  + +PL  AC  GH   VK L++HGA     
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
               HT L  AC  G +  V  LL   A +  +S    + +H+ A  G +E +  L+++G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYG 180
Query: 199 ARMD 202
             +D
Sbjct: 181 GNID 184

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%)
Query: 68  MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKY 127
           + +H   EG  PL  AAA G + +V+FL+++GA      +   + L  AC  G+  +VK 
Sbjct: 26  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 85
Query: 128 LVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS 187
           L++ G D    + +G T L+ A +  H + VK LL   AD   ++  G  ++      G 
Sbjct: 86  LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 145
Query: 188 IEILKLLLSH 197
             + +++ SH
Sbjct: 146 RSVQQVIESH 155

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G  PL  AA  GH    + L+  G   +++T+ + TPL  A  +GH  +V+ L++HGAD 
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
              +    T L  A    H  +V+ L+   AD++ +S    TA     + G+ ++ ++L
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           +   CR G+   V   +   + D+ +      DH    G  PL  A   G   +V+ L+ 
Sbjct: 4   IFTQCREGNAVAVRLWLDNTENDLNQGD----DH----GFSPLHWACREGRSAVVEMLIM 55
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
            GA++N   R + TPL  A   GH  +V+ L+++ AD    N HG+  L  AC+ G  ++
Sbjct: 56  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 115
Query: 158 VKYLLS 163
            + L++
Sbjct: 116 AEDLVA 121

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
           +PL  AC +G   VV+ L+  GA   V NR   T L +A   GH  IV+ LL   AD+N 
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA 214
            +  GN  LH     G  ++ + L+++GA + + + YG  P+  A
Sbjct: 96  VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 38  LIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE 97
           +   CR G+   V   +   + D+ +      DH    G  PL  A   G   +V+ L+ 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGD----DH----GFSPLHWACREGRSAVVEMLIM 60
Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
            GA++N   R + TPL  A   GH  +V+ L+++ AD    N HG+  L  AC+ G  ++
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
Query: 158 VKYLLS 163
            + L++
Sbjct: 121 AEDLVA 126

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
           +PL  AC +G   VV+ L+  GA   V NR   T L +A   GH  IV+ LL   AD+N 
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA 214
            +  GN  LH     G  ++ + L+++GA + + + YG  P+  A
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 145

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A  N   EI + L+        + GA +    ++  +P L+ A A G   I+ 
Sbjct: 39  GNTPLNIAVHNNDIEIAKALI--------DRGADINLQNSISDSPYLY-AGAQGRTEILA 89
Query: 94  FLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLM--IA 149
           ++++H    +N   R     L  A   GH   VK L+E G  D +  N  G+T L+  + 
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 150 CYKG---HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
             +G   +  IVK L+   AD + K + G TA+    + G  EI K+L  +
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 95  LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACYKG 153
           L++ GA  NS+  T  TPL AA      GV + L+ + A +       G T L++A    
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
              +V+ L++ +AD+N   + G TALH  A   + E + +LL H A  D  D    TPL 
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 213 AAAVVGHQHIVEYLIGLNIVSRK 235
            AA  G     + L+  N  +R+
Sbjct: 190 LAAREGSYEASKALLD-NFANRE 211

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 27  VTKFKFGGATPLIMACRNGHKEIVEY--LVKECKADVEETGAVMFDHETVEGAPPLWCAA 84
           + +    G T L +   N  ++ V    L+ E  A V+  GA   D E  +G   L  AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 85  AAGHLPIVQFLV-EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH 143
              + PIV++LV E G+  + +     TP+  A  +G   VV YL++ GA  E  +   H
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDH 347
Query: 144 TCLMIACYKGHYRIV 158
           T   +A    H+ IV
Sbjct: 348 TARQLAQANNHHNIV 362

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 47  KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT 106
           ++++ +  KEC A   +  A   D  T     PL  A  A    +V +L + GA      
Sbjct: 142 EDLIVHEAKECIAAGADVNAXDCDENT-----PLXLAVLARRRRLVAYLXKAGADPTIYN 196
Query: 107 RTNSTPLRAACFDGHFGVVKYLVEH---GADFEVSNRHGHTCLMIACY-KGHYRIV--KY 160
           ++  + L  A  +  FG   Y +       D E  +R+G T L I  + +G  ++   K 
Sbjct: 197 KSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKL 256
Query: 161 LLSLNADMN-----RKSS---KGNTALHDCAEAGSIEILKLLLSH-GARMD-VDSYGMTP 210
           L+   A ++     RK S   KG TALH  A+  +  I+K L+   G+  D  D  G TP
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 211 LLAAAVVGHQHIVEYLI 227
           +  AA  G   +V YLI
Sbjct: 317 IXLAAQEGRIEVVXYLI 333

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
           GA VN+     +TPL  A       +V YL + GAD  + N+   + L  A     +   
Sbjct: 156 GADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXX 215
Query: 159 KYLLS---LNADMNRKSSKGNTALHDCAE---AGSIEILKLLLSHGARMDVDS------- 205
            Y L+   L  D+      G TAL   A       +   KLL+  GA++D D        
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275
Query: 206 --YGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKID 239
              G T L  AA V +  IV+YL+G    S K+K D
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEK-GSNKDKQD 310

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 71/253 (28%)
Query: 35  ATPLIMACRNGHKEIVEYLVKECKADV--EETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           +TPL +A       IV+ L++   ADV  ++ G ++          PL  A + GH  + 
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLV----------PLHNACSYGHYEVT 107
Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC-- 150
           + L++HGA VN+      TPL  A       V   L+ HGAD  + N HG + + +A   
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 151 ---------YKGHY---------------------------------------------- 155
                    +KGH                                               
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK 227
Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAA 214
           ++ + LL   A++N K+    T LH  AE    +++++L  HGA+M+ +DS G T L  A
Sbjct: 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287
Query: 215 AVVGHQHIVEYLI 227
           A+ GH      L+
Sbjct: 288 ALAGHLQTCRLLL 300

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 87  GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           G   I   L++ GA  N +  + ++P+  A   G    +K LVEHGAD  V +  G   +
Sbjct: 52  GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
            +A  +GH  +V + L+  +D++R+ ++G T L    + G+ +++ +L  H
Sbjct: 112 HLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           NR G T L +  + G   I   LL   A  N + + G + +HD A  G ++ LK+L+ HG
Sbjct: 39  NRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 97
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKE 236
           A ++V D  G  P+  A   GH  +V +L   + + R++
Sbjct: 98  ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 136

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNS-KTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
           E    L  AA    + +V++ +  GA V+      NSTPL  A   GH  +V  L+++GA
Sbjct: 41  ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA-EAGSIEILK 192
           D  + +  G +C+ +A   GH  IV YL++   D++     G T L   A    S++  +
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 193 LLLSHGARMDV-DSY-GMTPLLAAAVVGHQHIVEYLI--GLNIVSRKEK 237
           LLL+    +++ D Y   T L  A + G+  ++  L+  G N+ ++  K
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 87  GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           G   I   L++ GA  N +  + ++P+  A   G    +K LVEHGAD  V +  G   +
Sbjct: 46  GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
            +A  +GH  +V + L+  +D++R+ ++G T L    + G+ +++ +L  H
Sbjct: 106 HLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           NR G T L +  + G   I   LL   A  N + + G + +HD A  G ++ LK+L+ HG
Sbjct: 33  NRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKE 236
           A ++V D  G  P+  A   GH  +V +L   + + R++
Sbjct: 92  ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 130

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD---- 134
           PL  A       I + L+  G     +    +TPL  AC  G    V  L +        
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 135 --FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RKSSKGNTALHDCAEAGSIEIL 191
              + +N +GHTCL +A   G+  IV+ L+SL AD+N ++   G TALH   +  + +++
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 192 KLLLSHGARMDVDSY-GMTP 210
            LLL  GA ++  +Y G +P
Sbjct: 168 SLLLKCGADVNRVTYQGYSP 187

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD---- 134
           PL  A       I + L+  G     +    +TPL  AC  G    V  L +        
Sbjct: 45  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 135 --FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RKSSKGNTALHDCAEAGSIEIL 191
              + +N +GHTCL +A   G+  IV+ L+SL AD+N ++   G TALH   +  + +++
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 192 KLLLSHGARMDVDSY-GMTP 210
            LLL  GA ++  +Y G +P
Sbjct: 165 SLLLKCGADVNRVTYQGYSP 184

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA V +K +  STPL  A  +GH  VVK L+E GAD    +
Sbjct: 10  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 140 RHGHTCLMIACYKGHYRIVKYL 161
           + G T   I+   G+  + + L
Sbjct: 70  KFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
           G    V+ L+ +GAD    +++G T L +A   GH  +VK LL   AD+N +   G TA 
Sbjct: 17  GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAF 76
Query: 180 HDCAEAGSIEILKLL 194
               + G+ ++ ++L
Sbjct: 77  DISIDNGNEDLAEIL 91

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA V +K +  STPL  A  +GH  VVK L+E GAD    +
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 140 RHGHTCLMIACYKGHYRIVKYL 161
           + G T   I+   G+  + + L
Sbjct: 88  KFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE 184
           V+ L+ +GAD    +++G T L +A   GH  +VK LL   AD+  +   G TA     +
Sbjct: 40  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 185 AGSIEILKLL 194
            G+ ++ ++L
Sbjct: 100 NGNEDLAEIL 109

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 11/208 (5%)
Query: 26  MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA 85
           M T+    G TPL +A   G+   V  LV     ++ + G    D        PL  A  
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLV-----NLFQQGGRELDIYNNLRQTPLHLAVI 55
Query: 86  AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA----DFEVSNRH 141
                +V+ LV  GA   +  R   T    AC       ++ L++  A    D E  N  
Sbjct: 56  TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGAR 200
           G T L +A        V+ LL   AD++    K G + L    E  S+ +++LLL HGA 
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 201 MDVDSY-GMTPLLAAAVVGHQHIVEYLI 227
           ++   Y G + L +A+  G   +V  L+
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLV 203

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLV----EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVE 130
           +G  PL  A   G+LP V  LV    + G +++       TPL  A       VV+ LV 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 131 HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNA----DMNRKSSKGNTALHDCAEAG 186
            GA     +RHG T   +AC       ++ LL   A    D+  ++  G TALH      
Sbjct: 68  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 187 SIEILKLLLSHGARMD-VD-SYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
             E ++LLL  GA +D VD   G +PL+ A       +V+ L+  G N+
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           +W A   G L  V+  V  G  VN        PL  A   G   ++++L+  GAD    +
Sbjct: 7   MW-ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLS 196
           +H  T L+ A Y+GH   VK LLS  AD   K   G TAL    EA   + +K LL 
Sbjct: 66  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL----EATDNQAIKALLQ 118

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
            M A   G    VK  ++   D+NR    G   LH  A+ G +EIL+ LL  GA ++  D
Sbjct: 6   FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
            + +TPLL+A   GH   V+ L+
Sbjct: 66  KHHITPLLSAVYEGHVSCVKLLL 88

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 19/233 (8%)
Query: 7   DEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
           +E+   Q  L    H +  ++ +    G  PL  +      EI  +L+ + +        
Sbjct: 13  NEFFKVQELL----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME------NV 62
Query: 67  VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK--VNSKTRTNSTPLRAACFDGHFGV 124
            + D+    G  P   A + G+L +V+ L +   K  +N  T    T L  A     F V
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 125 VKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTAL-HDC 182
            ++L+E+GA   + ++     L  A   G  ++++ L  L  + +N +  +G T L H  
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 183 AEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR 234
           AE      + L+  +GA  D VD+ G     A  V  ++ + ++ +  N+V +
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAK---AEDVALNEQVKKFFLN-NVVDK 231

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 75  EGAPPL-WCAAAAGHLPIVQFLVEHGAKVNSKTRTNS---TPLRAACFDGHFGVVKYLVE 130
           +G  PL W  +   H  I  FL+     VN     +    TP   AC  G+  VVK L +
Sbjct: 35  DGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 131 H--GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
                D       G TCL +A  K  + + ++L+   A +  K       LH  A  GS+
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 189 EILKLL--LSHGARMDVDSYGMTPLLAAAVVGH 219
           ++++LL  L   A    D  G TPL  A   GH
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 75  EGAPPL-WCAAAAGHLPIVQFLVEHGAKVNSKTRTNS---TPLRAACFDGHFGVVKYLVE 130
           +G  PL W  +   H  I  FL+     VN     +    TP   AC  G+  VVK L +
Sbjct: 35  DGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93
Query: 131 H--GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
                D       G TCL +A  K  + + ++L+   A +  K       LH  A  GS+
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 189 EILKLL--LSHGARMDVDSYGMTPLLAAAVVGH 219
           ++++LL  L   A    D  G TPL  A   GH
Sbjct: 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADM 168
             PL  A   G+   ++  +++       ++ G T L  AC+ GH  IV+ L +  N ++
Sbjct: 74  DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
           N+++  G+TALH  A  G  +I++LLL+ GAR D+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           +W A   G L  V+  V  G  VN        PL  A   G   ++++L+  GAD    +
Sbjct: 12  MW-ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLS 196
           +H  T L+ A Y+GH   VK LLS  AD   K   G TA     EA   + +K LL 
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF----EATDNQAIKALLQ 123

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
            M A   G    VK  ++   D+NR    G   LH  A+ G +EIL+ LL  GA ++  D
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
            + +TPLL+A   GH   V+ L+
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLL 93

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
           L  AA AG    V+ L+ +GA VN+K +   TPL  A  +GH  +V+ L++ GAD    +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 140 RHGHTCLMIACYKGHYRIVKYL 161
           + G T   I+   G+  + + L
Sbjct: 66  KFGKTAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 120 GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
           G    V+ L+ +GAD    ++ G+T L +A  +GH  IV+ LL   AD+N +   G TA 
Sbjct: 13  GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 72
Query: 180 HDCAEAGSIEILKLL 194
               + G+ ++ ++L
Sbjct: 73  DISIDNGNEDLAEIL 87

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 11/199 (5%)
Query: 38  LIMACR-NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLV 96
           L +ACR + H E+V   +   +A        + +     G   L  + +  + P+VQ L+
Sbjct: 72  LRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLL 131
Query: 97  EHGA-KVNSKTRTNSTPLRAACF-----DGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
           + G  KV+ + R   +P+                V  L   G     +++ G T LM+A 
Sbjct: 132 DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV 191
Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYG 207
             G   +VK LL+  AD+N +   G+TAL    E G  EI  LLL+  +  D+   D  G
Sbjct: 192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-CDISLTDRDG 250
Query: 208 MTPLLAAAVVGHQHIVEYL 226
            T L+ A   G   I   L
Sbjct: 251 STALMVALDAGQSEIASML 269

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
           VN       TPL  A   G    V++L+E GAD  +  +   + L +A   G+  IV  L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS-YGMTPLLAAAVVGHQ 220
           L  + D+N     G T L        ++ ++ LL+ GA +  ++  G TP+  A  +G++
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 221 HIVEYL 226
            + + +
Sbjct: 149 KVQQVI 154

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 95  LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH 154
           L++ GA  N +  + ++P+  A   G    +K LVEHGAD    +  G   + +A  +GH
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
             +V + L+  +D++ + + G T L    + G+  ++ +L  H
Sbjct: 122 SSVVSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           NR G T L +  + G   +   LL   A  N + + G + +HD A  G ++ LK+L+ HG
Sbjct: 41  NRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 99
Query: 199 ARMD-VDSYGMTPLLAAAVVGHQHIVEYL 226
           A ++ +DS G  P+  A   GH  +V +L
Sbjct: 100 ADVNALDSTGSLPIHLAIREGHSSVVSFL 128

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 96  VEHGAKVNSKTRTNSTPLR---AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           + HG +V    + N  PL     +  +G F +V+ ++    D  + N  G T L  A   
Sbjct: 25  IAHGMRV----KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80
Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           GH  IVK+L+    ++N   S G T LH  A   ++++ K L+  GA
Sbjct: 81  GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 95  LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH 154
           L++ GA  N +  + ++P+  A   G    +K LVEHGAD    +  G   + +A  +GH
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
             +V + L+  +D++ + + G T L    + G+  ++ +L  H
Sbjct: 120 SSVVSF-LAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           NR G T L +  + G   +   LL   A  N + + G + +HD A  G ++ LK+L+ HG
Sbjct: 39  NRFGKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG 97
Query: 199 ARMD-VDSYGMTPLLAAAVVGHQHIVEYL 226
           A ++ +DS G  P+  A   GH  +V +L
Sbjct: 98  ADVNALDSTGSLPIHLAIREGHSSVVSFL 126

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
           VN       TPL  A   G    V++L+E GAD  +  +   + L +A   G+  IV  L
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS-YGMTPLLAAAVVGHQ 220
           L  + D+N     G T L        ++ ++ LL+ GA +  ++  G TP+  A  +G++
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 221 HIVEYL 226
            + + +
Sbjct: 149 KVQQVI 154

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 7/201 (3%)
Query: 34  GATPLIMA-CRNGHKEIVEYLVKE----CKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
           G TPL++A C  G  E      +E      +D    GA + +     GA  L  AAA   
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSR 69
Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLM 147
               + L+E  A  N +     TPL AA      GV + L+ + A D +     G T L+
Sbjct: 70  SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSY 206
           +A       +++ L++ +AD+N     G +ALH  A   +++   +LL +GA  D+ ++ 
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 207 GMTPLLAAAVVGHQHIVEYLI 227
             TPL  AA  G     + L+
Sbjct: 190 EETPLFLAAREGSYETAKVLL 210

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RK 171
           L  A   G    V+ L+E GA+    N +G   + +    G  R+ + LL   A+ N   
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL---I 227
            +     +HD A  G ++ L +L   GAR+DV D++G  P+  A  +GH+ +  YL    
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Query: 228 GLNIVSRKEKIDALE 242
           G    S   +IDA E
Sbjct: 135 GGTRGSNHARIDAAE 149

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
           L  +  +G F +V+ ++    D  + N  G T L  A   GH  IVK+L+    ++N   
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 173 SKGNTALHDCAEAGSIEILKLLLSHGA 199
           S G T LH  A   ++++ K L+  GA
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
           G T L +    G+  I + LL   A+ + K   GN  +HD A AG ++ L+ LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++ D+ G  PL  AA  GH  +VE+L+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLV 123

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS 172
           L  A   G    V+ L+E GAD    NR G   + +    G  ++ + LL   A+ N   
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 173 SKGNT-ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
               T  +HD A  G ++ L +L   GAR+DV D++G  P+  A   GH+ I  YL
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 87  GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           G+  I + L+  GA  + K RT    +  A   G    ++ L+E  AD  + +  G+  L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            +A  +GH R+V++L+   A ++  ++ KG+TA       G  E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
           G T L +    G+  I + LL   A+ + K   G   +HD A AG ++ L+ LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++ D+ G  PL  AA  GH  +VE+L+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLV 123

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 87  GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           G+  I + L+  GA  + K RT    +  A   G    ++ L+E+ AD  + +  G+  L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            +A  +GH R+V++L+   A ++  ++ KG+TA       G  E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
           G T L +    G+  I + LL   A+ + K   G   +HD A AG ++ L+ LL + A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++ D+ G  PL  AA  GH  +VE+L+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLV 123

>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20 Structures Length = 156

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN-RK 171
           L  A   G    V+ L+E GA     N +G   + +    G  R+ + LL   A+ N   
Sbjct: 16  LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL---I 227
            +     +HD A  G ++ L +L   GAR+DV D++G  P+  A  +GH+ +  YL    
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Query: 228 GLNIVSRKEKIDALE 242
           G    S   +IDA E
Sbjct: 135 GGTRGSNHARIDAAE 149

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 87  GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           G+  I + L+  GA  + K RT    +  A   G    ++ L+E  AD  + +  G+  L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            +A  +GH R+V++L+   A ++  ++ KG+TA       G  E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
           G T L +    G+  I + LL   A+ + K   G   +HD A AG ++ L+ LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++ D+ G  PL  AA  GH  +VE+L+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLV 123

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 87  GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           G+  I + L+  GA  + K RT    +  A   G    ++ L+E  AD  + +  G+  L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 147 MIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            +A  +GH R+V++L+   A ++  ++ KG+TA       G  E++ L+ ++GA
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
           G T L +    G+  I + LL   A+ + K   G   +HD A AG ++ L+ LL   A +
Sbjct: 38  GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++ D+ G  PL  AA  GH  +VE+L+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLV 123

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 7/201 (3%)
Query: 34  GATPLIMA-CRNGHKEIVEYLVKE----CKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
           G TPL++A C  G  E      +E      +D    GA + +     G   L  AA    
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLM 147
               + L+E  A  N +     TPL AA      GV + L+ + A D +     G T L+
Sbjct: 70  SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSY 206
           +A       +++ L++ +AD+N     G +ALH  A   +++   +LL +GA  D+ ++ 
Sbjct: 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 189
Query: 207 GMTPLLAAAVVGHQHIVEYLI 227
             TPL  AA  G     + L+
Sbjct: 190 EETPLFLAAREGSYETAKVLL 210

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 7/201 (3%)
Query: 34  GATPLIMA-CRNGHKEIVEYLVKE----CKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
           G TPL++A C  G  E      +E      +D    GA + +     G   L  AA    
Sbjct: 11  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 70
Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLM 147
               + L+E  A  N +     TPL AA      GV + L+ + A D +     G T L+
Sbjct: 71  SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 130
Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSY 206
           +A       +++ L++ +AD+N     G +ALH  A   +++   +LL +GA  D+ ++ 
Sbjct: 131 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 190
Query: 207 GMTPLLAAAVVGHQHIVEYLI 227
             TPL  AA  G     + L+
Sbjct: 191 EETPLFLAAREGSYETAKVLL 211

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAA 215
           IV +L+  + ++++++ KG+TALH C    + E LKLLL   A +++ +  G TPL  A 
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 216 VVGHQHIVEYL 226
            + H+H  E L
Sbjct: 247 RLKHEHCEELL 257

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 39/87 (44%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           + A PL  A AA  L   +FL+++GA VN        PL  A   GH G+    ++ GAD
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYL 161
               +  G   L IA    +  IV  L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 39/87 (44%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           + A PL  A AA  L   +FL+++GA VN        PL  A   GH G+    ++ GAD
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYL 161
               +  G   L IA    +  IV  L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 39/87 (44%)
Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           + A PL  A AA  L   +FL+++GA VN        PL  A   GH G+    ++ GAD
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYL 161
               +  G   L IA    +  IV  L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
            E  N  GHT L +A       +V+ L    AD+N+     G T LH   EA +  +L+L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           LL  GA      YG    L +A++    I+  L+
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
            E  N  GHT L +A       +V+ L    AD+N+     G T LH   EA +  +L+L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 194 LLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           LL  GA      YG    L +A++    I+  L+
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Query: 65  GAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGV 124
           GA + +     G   L  AA        + L+E  A  N +     TPL AA      GV
Sbjct: 14  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 125 VKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA 183
            + L+ + A D +     G T L++A       +++ L++ +AD+N     G +ALH  A
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 184 EAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
              +++   +LL +GA  D+ ++   TPL  AA  G     + L+
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 37/84 (44%)
Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
           A   G   VV+  V+   D    N  G T L  A    +Y IV +L++  A++N   S G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 176 NTALHDCAEAGSIEILKLLLSHGA 199
            T LH  A      I   L+ HGA
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGA 111

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 16  LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
           L+AR H+           G TPLI+A R   + ++E L+    ADV     +        
Sbjct: 8   LDARMHD-----------GTTPLILAARLALEGMLEDLIN-SHADVNAVDDL-------- 47
Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G   L  AAA  ++     L+++GA  + +     TPL  A  +G +   K L++H A+ 
Sbjct: 48  GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 107
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYL 161
           ++++        IA  + H+ IV+ L
Sbjct: 108 DITDHMDRLPRDIAQERMHHDIVRLL 133

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 16  LEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVE 75
           L+AR H+           G TPLI+A R   + ++E L+    ADV     +        
Sbjct: 82  LDARMHD-----------GTTPLILAARLALEGMLEDLIN-SHADVNAVDDL-------- 121
Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G   L  AAA  ++     L+++GA  + +     TPL  A  +G +   K L++H A+ 
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 181
Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYL 161
           ++++        IA  + H+ IV+ L
Sbjct: 182 DITDHMDRLPRDIAQERMHHDIVRLL 207

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 2/165 (1%)
Query: 65  GAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGV 124
           GA + +     G   L  AA        + L+E  A    +     TPL AA      GV
Sbjct: 11  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 125 VKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA 183
            + L+ + A D +     G T L++A       +++ L++ +AD+N     G +ALH  A
Sbjct: 71  FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAA 130
Query: 184 EAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
              +++   +LL +GA  D+ ++   TPL  AA  G     + L+
Sbjct: 131 AVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-65
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-64
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-53
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-65
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-64
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-41
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-65
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-64
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-64
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-64
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-63
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-63
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-54
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-64
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-58
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-58
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-53
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-49
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-64
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-58
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-63
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-54
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-59
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-58
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-51
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-59
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-48
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-59
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-38
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-59
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-55
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-45
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-41
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-58
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-58
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-55
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-50
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-49
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-58
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-48
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-57
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-51
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-50
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-55
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-53
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-47
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-55
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-50
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-55
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-55
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-48
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-55
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-50
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-54
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-51
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-54
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-53
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-50
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-50
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-45
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-44
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-53
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-51
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-50
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-43
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-52
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-44
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-52
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-52
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-47
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-52
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-52
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-40
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-52
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-50
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-48
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-45
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-52
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-51
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-49
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-52
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-45
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-51
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-46
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-51
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-43
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-42
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-50
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-50
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-50
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-45
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-49
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-44
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-47
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-43
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-40
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-46
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-44
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-40
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-46
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-46
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-34
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-45
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-44
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-34
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-11
2rfa_A	232	Transient receptor potential cation channel subfa	9e-45
2rfa_A	232	Transient receptor potential cation channel subfa	3e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-43
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-42
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-41
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-43
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-41
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-40
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-39
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-38
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-39
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-39
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-38
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-38
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-35
2pnn_A	273	Transient receptor potential cation channel subfa	3e-37
2pnn_A	273	Transient receptor potential cation channel subfa	5e-35
2pnn_A	273	Transient receptor potential cation channel subfa	2e-28
2pnn_A	273	Transient receptor potential cation channel subfa	3e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-36
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-35
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-20
2etb_A	256	Transient receptor potential cation channel subfam	5e-36
2etb_A	256	Transient receptor potential cation channel subfam	1e-32
2etb_A	256	Transient receptor potential cation channel subfam	1e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-35
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-30
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-30
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-33
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-33
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-32
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-31
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-31
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-31
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-30
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-21
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-10

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  202 bits (517), Expect = 1e-65
 Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 11/197 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             T L  A  N   ++V+Y +    A V++ G           + PL  A   GHL +V 
Sbjct: 42  NVTLLHWAAINNRIDLVKYYI-SKGAIVDQLG-------GDLNSTPLHWATRQGHLSMVV 93

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+++GA  +       + +  A   GH  +V YL+  G D ++ +++G T LM A Y+ 
Sbjct: 94  QLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT 153

Query: 154 HYR-IVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTP 210
           H     + LL+ N  +N       NTALH    AG+  ++ LLL  GA +D  +  G + 
Sbjct: 154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESA 213

Query: 211 LLAAAVVGHQHIVEYLI 227
           L  A    +  ++ +L 
Sbjct: 214 LDLAKQRKNVWMINHLQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  198 bits (507), Expect = 4e-64
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 13/198 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               ++ A + G  E    LV E   DV +           E    L  AA    + +V+
Sbjct: 9   STWDIVKATQYGIYERCRELV-EAGYDVRQP--------DKENVTLLHWAAINNRIDLVK 59

Query: 94  FLVEHGAKVNSKTR-TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           + +  GA V+      NSTPL  A   GH  +V  L+++GAD  + +  G +C+ +A   
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG-SIEILKLLLSHGARMDV--DSYGMT 209
           GH  IV YL++   D++     G T L   A    S++  +LLL+    +++    +  T
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179

Query: 210 PLLAAAVVGHQHIVEYLI 227
            L  A + G+  ++  L+
Sbjct: 180 ALHWAVLAGNTTVISLLL 197

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  171 bits (435), Expect = 3e-53
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 11/173 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
            +TPL  A R GH  +V  L+ +  AD              EG   +  AA  GH  IV 
Sbjct: 76  NSTPLHWATRQGHLSMVVQLM-KYGADPSL--------IDGEGCSCIHLAAQFGHTSIVA 126

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGH-FGVVKYLVEHGADFEV-SNRHGHTCLMIACY 151
           +L+  G  V+   +   TPL  A +  H     + L+       +    H +T L  A  
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186

Query: 152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVD 204
            G+  ++  LL   A+++ ++ KG +AL    +  ++ ++  L         D
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  138 bits (350), Expect = 2e-40
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
           +      ++  +  A   G +   + LVE G D    ++   T L  A       +VKY 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 162 LSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH 219
           +S  A +++      +T LH     G + ++  L+ +GA   + D  G + +  AA  GH
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 220 QHIVEYLI 227
             IV YLI
Sbjct: 122 TSIVAYLI 129

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  100 bits (253), Expect = 4e-26
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 34  GATPLIMACRNGH-KEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           G TPL+ A    H  +    L+      V          +       L  A  AG+  ++
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLL-TFNVSVNLG-------DKYHKNTALHWAVLAGNTTVI 193

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
             L+E GA V+++     + L  A    +  ++ +L E        N
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  202 bits (516), Expect = 2e-65
 Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 11/200 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL+ A  N H E V+YL+K   A V+            EG+  L  AA  GH  +VQ
Sbjct: 44  QRTPLMEAAENNHLEAVKYLIKA-GALVDPK--------DAEGSTCLHLAAKKGHYEVVQ 94

Query: 94  FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           +L+ +G   VN +     TP+  A    H  +VK L+  G+D  + +   + CL  A + 
Sbjct: 95  YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS 154

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
           G   I + LL+   D++  +  G++ LH  A     + + L LS  + + + +  G TPL
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

Query: 212 LAAAVVGHQHIVEYLIGLNI 231
             A++         +     
Sbjct: 215 QCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  199 bits (509), Expect = 2e-64
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             +PL  A   GH +I   LV +  A+++       D  T     PL  AA   HL  V+
Sbjct: 11  KRSPLHAAAEAGHVDICHMLV-QAGANIDTCSE---DQRT-----PLMEAAENNHLEAVK 61

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACYK 152
           +L++ GA V+ K    ST L  A   GH+ VV+YL+ +G  D    +  G T ++ A   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
            H  +VK LLS  +D+N + ++ N  LH  A +G ++I ++LL+    +   + +G +PL
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181

Query: 212 LAAAVVGHQHIVEYLI 227
             AA       V   +
Sbjct: 182 HIAARENRYDCVVLFL 197

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  139 bits (354), Expect = 4e-41
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 6/135 (4%)

Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
              + +   +PL AA   GH  +   LV+ GA+ +  +    T LM A    H   VKYL
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVG 218
           +   A ++ K ++G+T LH  A+ G  E+++ LLS+G  MDV   D  G TP++ A    
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ-MDVNCQDDGGWTPMIWATEYK 122

Query: 219 HQHIVEYLI--GLNI 231
           H  +V+ L+  G +I
Sbjct: 123 HVDLVKLLLSKGSDI 137

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  138 bits (351), Expect = 1e-40
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TP+I A    H ++V+ L+ +  +D+             E    L  AA +G + I +
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSK-GSDINIR--------DNEENICLHWAAFSGCVDIAE 161

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+     +++      +PL  A  +  +  V   +   +D  + N+ G T L  A    
Sbjct: 162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221

Query: 154 HYRIVKYLLSLNAD 167
                  +     D
Sbjct: 222 QVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  104 bits (261), Expect = 2e-27
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%)

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
            +F++ +++  + L  A   GH  I   L+   A+++  S    T L + AE   +E +K
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 193 LLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
            L+  GA   V   D+ G T L  AA  GH  +V+YL+
Sbjct: 62  YLIKAGA--LVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIV 223
           + +   +     + LH  AEAG ++I  +L+  GA +D       TPL+ AA   H   V
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 224 EYLI--GLNI 231
           +YLI  G  +
Sbjct: 61  KYLIKAGALV 70

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  208 bits (532), Expect = 2e-65
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 10/195 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A   GH  IV+ L+ +  A              V+   PL  AA AGH  + +
Sbjct: 14  GLTPLHVASFMGHLPIVKNLL-QRGASPNV--------SNVKVETPLHMAARAGHTEVAK 64

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
           +L+++ AKVN+K + + TPL  A   GH  +VK L+E+ A+  ++   GHT L IA  +G
Sbjct: 65  YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG 124

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           H   V  LL   A     + KG T LH  A+ G + + +LLL   A  +     G+TPL 
Sbjct: 125 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 184

Query: 213 AAAVVGHQHIVEYLI 227
            A    +  IV+ L+
Sbjct: 185 VAVHHNNLDIVKLLL 199

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  206 bits (526), Expect = 1e-64
 Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 10/195 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A R GH E V  L+ E +A             T +G  PL  AA  G + + +
Sbjct: 113 GHTPLHIAAREGHVETVLALL-EKEASQACM--------TKKGFTPLHVAAKYGKVRVAE 163

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+E  A  N+  +   TPL  A    +  +VK L+  G        +G+T L IA  + 
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
              + + LL      N +S +G T LH  A+ G  E++ LLLS  A  ++ +  G+TPL 
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283

Query: 213 AAAVVGHQHIVEYLI 227
             A  GH  + + LI
Sbjct: 284 LVAQEGHVPVADVLI 298

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  205 bits (524), Expect = 2e-64
 Identities = 62/201 (30%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL  A R GH  +V+ L+ E  A+            T  G  PL  AA  GH+  V 
Sbjct: 80  DQTPLHCAARIGHTNMVKLLL-ENNANPNLA--------TTAGHTPLHIAAREGHVETVL 130

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+E  A     T+   TPL  A   G   V + L+E  A    + ++G T L +A +  
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLL 212
           +  IVK LL      +  +  G T LH  A+   +E+ + LL +G   +     G+TPL 
Sbjct: 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250

Query: 213 AAAVVGHQHIVEYLI--GLNI 231
            AA  GH  +V  L+    N 
Sbjct: 251 LAAQEGHAEMVALLLSKQANG 271

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  205 bits (524), Expect = 3e-64
 Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 10/197 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A +    E+   L+ +               E+V+G  PL  AA  GH  +V 
Sbjct: 212 GYTPLHIAAKQNQVEVARSLL-QYGGSANA--------ESVQGVTPLHLAAQEGHAEMVA 262

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+   A  N   ++  TPL     +GH  V   L++HG   + + R G+T L +A + G
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 322

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           + ++VK+LL   AD+N K+  G + LH  A+ G  +I+ LLL +GA  +   S G TPL 
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382

Query: 213 AAAVVGHQHIVEYLIGL 229
            A  +G+  + + L  +
Sbjct: 383 IAKRLGYISVTDVLKVV 399

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  203 bits (519), Expect = 1e-63
 Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 10/195 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A + G   + E L+ E  A     G          G  PL  A    +L IV+
Sbjct: 146 GFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGK--------NGLTPLHVAVHHNNLDIVK 196

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  G   +S      TPL  A       V + L+++G      +  G T L +A  +G
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 256

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           H  +V  LLS  A+ N  +  G T LH  A+ G + +  +L+ HG  +D     G TPL 
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316

Query: 213 AAAVVGHQHIVEYLI 227
            A+  G+  +V++L+
Sbjct: 317 VASHYGNIKLVKFLL 331

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  203 bits (518), Expect = 2e-63
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 10/195 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A  + + +IV+ L+                     G  PL  AA    + + +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPR-GGSPHSP--------AWNGYTPLHIAAKQNQVEVAR 229

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+++G   N+++    TPL  A  +GH  +V  L+   A+  + N+ G T L +   +G
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 289

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           H  +   L+     ++  +  G T LH  +  G+I+++K LL H A ++     G +PL 
Sbjct: 290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349

Query: 213 AAAVVGHQHIVEYLI 227
            AA  GH  IV  L+
Sbjct: 350 QAAQQGHTDIVTLLL 364

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  179 bits (456), Expect = 3e-54
 Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 22/198 (11%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A + GH E+V  L+ + +A+               G  PL   A  GH+P+  
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSK-QANGNLGNK--------SGLTPLHLVAQEGHVPVAD 295

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L++HG  V++ TR   TPL  A   G+  +VK+L++H AD     + G++ L  A  +G
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL---LSHGARMDV-DSYGMT 209
           H  IV  LL   A  N  SS G T L      G I +  +L       + + V D + M+
Sbjct: 356 HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415

Query: 210 PLLAAAVVGHQHIVEYLI 227
                        V+ ++
Sbjct: 416 ---------FPETVDEIL 424

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (392), Expect = 8e-45
 Identities = 48/131 (36%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
            G        +  TPL  A F GH  +VK L++ GA   VSN    T L +A   GH  +
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV 216
            KYLL   A +N K+    T LH  A  G   ++KLLL + A  ++  + G TPL  AA 
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 217 VGHQHIVEYLI 227
            GH   V  L+
Sbjct: 123 EGHVETVLALL 133

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (392), Expect = 9e-45
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +  + GH  + + L+ +    V+ T        T  G  PL  A+  G++ +V+
Sbjct: 278 GLTPLHLVAQEGHVPVADVLI-KHGVMVDAT--------TRMGYTPLHVASHYGNIKLVK 328

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
           FL++H A VN+KT+   +PL  A   GH  +V  L+++GA     +  G T L IA   G
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388

Query: 154 HYRIVKYLLSL---NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           +  +   L  +    + +        +             +  +L    
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSE 428

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (284), Expect = 3e-29
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 21/141 (14%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A   G+ ++V++L+ + +ADV           T  G  PL  AA  GH  IV 
Sbjct: 311 GYTPLHVASHYGNIKLVKFLL-QHQADVNAK--------TKLGYSPLHQAAQQGHTDIVT 361

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL---VEHGADFEVSNRHGHTCLMIAC 150
            L+++GA  N  +   +TPL  A   G+  V   L    +  +   VS++H  +      
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---- 417

Query: 151 YKGHYRIVKYLLSLNADMNRK 171
                  V  +L ++ D   +
Sbjct: 418 -----ETVDEILDVSEDEGEE 433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 19/75 (25%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECK--ADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
           G TPL +A R G+  + + L       + V  +        +                  
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK---HRMS--------------FPET 419

Query: 92  VQFLVEHGAKVNSKT 106
           V  +++       + 
Sbjct: 420 VDEILDVSEDEGEEL 434

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  201 bits (513), Expect = 2e-64
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 10/194 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             +P+  A  +GH+  +  L+ +    V           T +   PL  A   GHL  V+
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQ-GWAVNII--------TADHVSPLHEACLGGHLSCVK 109

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L++HGA+VN  T    TPL  AC  G +  V  L++HGA  +  +    + +  A  +G
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 168

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLA 213
           H   V  L++   +++ K S   T L+   E      +K LL  GA ++      +PL A
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHA 228

Query: 214 AAVVGHQHIVEYLI 227
                 + +   L+
Sbjct: 229 VVRTASEELACLLM 242

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  185 bits (472), Expect = 3e-58
 Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 18/195 (9%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G+ P       G + +   L+ +  +D   +              P+  AA  GH   ++
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLMGDAVSD--WS--------------PMHEAAIHGHQLSLR 76

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  G  VN  T  + +PL  AC  GH   VK L++HGA         HT L  AC  G
Sbjct: 77  NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 136

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
            +  V  LL   A +  + S   + +H+ A  G +E +  L+++G  +D   S+  TPL 
Sbjct: 137 SWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY 195

Query: 213 AAAVVGHQHIVEYLI 227
            A     +  V+ L+
Sbjct: 196 LACENQQRACVKKLL 210

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  185 bits (472), Expect = 3e-58
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 13/195 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             +PL  AC  GH   V+ L+ +  A V           T +   PL+ A  +G    V 
Sbjct: 92  HVSPLHEACLGGHLSCVKILL-KHGAQVNGV--------TADWHTPLFNACVSGSWDCVN 142

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L++HGA V  ++   ++P+  A   GH   V  L+ +G + +    H  T L +AC   
Sbjct: 143 LLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 201

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLL 212
               VK LL   AD+N +    ++ LH      S E+  LL+  GA     ++ G  P+ 
Sbjct: 202 QRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE 260

Query: 213 AAAVVGHQHIVEYLI 227
                       +L 
Sbjct: 261 LVPPESP-LAQLFLE 274

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  171 bits (437), Expect = 5e-53
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 11/188 (5%)

Query: 40  MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG 99
           M   + H      LV    + +            ++G+ P       G       L+ + 
Sbjct: 1   MGSSHHHHHHSSGLV-PRGSHMASMDG---KQGGMDGSKPAGPRDFPGIR-----LLSNP 51

Query: 100 AKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVK 159
              ++ +  + +P+  A   GH   ++ L+  G    +      + L  AC  GH   VK
Sbjct: 52  LMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK 109

Query: 160 YLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGH 219
            LL   A +N  ++  +T L +   +GS + + LLL HGA +  +S   +P+  AA  GH
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGH 169

Query: 220 QHIVEYLI 227
              V  LI
Sbjct: 170 VECVNSLI 177

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  161 bits (409), Expect = 9e-49
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 12/169 (7%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL  AC +G  + V  L++   A V+            + A P+  AA  GH+  V 
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQH-GASVQPES---------DLASPIHEAARRGHVECVN 174

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+ +G  ++ K     TPL  AC +     VK L+E GAD     +   + L       
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTA 233

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
              +   L+   AD   K+++G   +        +  L  L   GA + 
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  129 bits (327), Expect = 1e-36
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
            A+P+  A R GH E V  L+     ++        DH+      PL+ A        V+
Sbjct: 157 LASPIHEAARRGHVECVNSLI-AYGGNI--------DHKISHLGTPLYLACENQQRACVK 207

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+E GA VN + +   +PL A        +   L++ GAD +  N  G   + +   + 
Sbjct: 208 KLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 266

Query: 154 HYRIVKYLLSLNADMNR 170
                 +L    A + +
Sbjct: 267 P-LAQLFLEREGASLPK 282

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  193 bits (493), Expect = 6e-63
 Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 9/179 (5%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           G +  +      G  + ++  +          G  + +     G  PL  A+A G +  V
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHL--------RKGDNLVNKPDERGFTPLIWASAFGEIETV 52

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           +FL+E GA  +   +   + L  A   G+  +V  L+E   D  + + +G T L+ A   
Sbjct: 53  RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG 112

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTP 210
            H + V+ LL+  AD+  ++  G T +      G  ++ +++ +H  ++   +     P
Sbjct: 113 NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  172 bits (439), Expect = 1e-54
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 2/151 (1%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
            +   AA G L  ++  +  G   VN       TPL  A   G    V++L+E GAD  +
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
             +   + L +A   G+  IV  LL  + D+N     G T L        ++ ++ LL+ 
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124

Query: 198 GARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           GA +      G TP+  A  +G++ + + + 
Sbjct: 125 GADLTTEADSGYTPMDLAVALGYRKVQQVIE 155

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  136 bits (345), Expect = 1e-40
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFE-VSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
           +S  +      G    +K  +  G +     +  G T L+ A   G    V++LL   AD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            +  + +  +AL   +  G  +I+ LLL     +++ D  G TPLL A    H   VE L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 227 I 227
           +
Sbjct: 122 L 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  187 bits (478), Expect = 1e-59
 Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 17/203 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVK---ECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
           G TPL +A   G+   V  LV    +   +++                PL  A       
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--------NNLRQTPLHLAVITTLPS 60

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA----DFEVSNRHGHTCL 146
           +V+ LV  GA   +  R   T    AC       ++ L++  A    D E  N  G T L
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDV-D 204
            +A        V+ LL   AD++    K G + L    E  S+ +++LLL HGA ++   
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM 180

Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G + L +A+  G   +V  L+
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLV 203

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  184 bits (471), Expect = 1e-58
 Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL +A       +V  LV    A                G      A        ++
Sbjct: 46  RQTPLHLAVITTLPSVVRLLV-TAGASPMAL--------DRHGQTAAHLACEHRSPTCLR 96

Query: 94  FLVEHGAK----VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH-GHTCLMI 148
            L++  A     + ++     T L  A        V+ L+E GAD +  +   G + L+ 
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156

Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYG 207
           A       +V+ LL   A++N +   G++ALH  +  G + +++ L+  GA   + + + 
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216

Query: 208 MTPLLAAAVVGHQHIVEYLI 227
            TPL+ A       I+    
Sbjct: 217 DTPLMVARSRRVIDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  166 bits (422), Expect = 2e-51
 Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 34  GATPLIMACRNGHKEIVEYLVK---ECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
           G T   +AC +     +  L+        D+E            +G   L  A       
Sbjct: 79  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR--------NYDGLTALHVAVNTECQE 130

Query: 91  IVQFLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
            VQ L+E GA +++    +  +PL  A  +    +V+ L++HGA+       G + L  A
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             +G   +V+ L+   AD + K+   +T L        I+IL+   +  A
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  128 bits (325), Expect = 1e-36
 Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 102 VNSKTRTNSTPLRAACFDGHFGVVKYLVE----HGADFEVSNRHGHTCLMIACYKGHYRI 157
                    TPL  A   G+   V  LV      G + ++ N    T L +A       +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-----DSYGMTPLL 212
           V+ L++  A        G TA H   E  S   L+ LL   A   +     +  G+T L 
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 213 AAAVVGHQHIVEYLI--GLNI 231
            A     Q  V+ L+  G +I
Sbjct: 122 VAVNTECQETVQLLLERGADI 142

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  185 bits (472), Expect = 2e-59
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 21/205 (10%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
                L  A +   K++ E L  +    V+E           EG  PL  A     + I 
Sbjct: 5   EVGALLEAANQRDTKKVKEILQ-DTTYQVDEVDT--------EGNTPLNIAVHNNDIEIA 55

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACY 151
           + L++ GA +N +   + +P   A   G   ++ Y+++H   D    NR+G   L+ A  
Sbjct: 56  KALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 152 KGHYRIVKYLLSL-NADMNRKSSKGNTALH-----DCAEAGSIEILKLLLSHGARMDV-- 203
           KGH   VK LL     D++ ++  G TAL              +I+KLL+ +GA  D   
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA--DQSI 173

Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
            D+ G T +  A   G+  I + L 
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  157 bits (399), Expect = 3e-48
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A  N   EI + L+ +  AD+    +     ++     P   A A G   I+ 
Sbjct: 39  GNTPLNIAVHNNDIEIAKALI-DRGADINLQNS---ISDS-----PYLYAGAQGRTEILA 89

Query: 94  FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLMIAC- 150
           ++++H    +N   R     L  A   GH   VK L+E G  D +  N  G+T L+ A  
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149

Query: 151 ----YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
                + +  IVK L+   AD + K + G TA+    + G  EI K+L  +
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  134 bits (340), Expect = 2e-39
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 105 KTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL 164
           KT      L AA       V + L +     +  +  G+T L IA +     I K L+  
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQH 221
            AD+N ++S  ++        G  EIL  +L H    D+   + YG   L+ AA  GH  
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT-PDLNKHNRYGGNALIPAAEKGHID 120

Query: 222 IVEYLI 227
            V+ L+
Sbjct: 121 NVKLLL 126

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  186 bits (475), Expect = 4e-59
 Identities = 50/203 (24%), Positives = 79/203 (38%), Gaps = 13/203 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L +A R    +  + L+ E  AD               G  PL  A +A    + Q
Sbjct: 57  GETALHLAARYSRSDAAKRLL-EASADANIQ--------DNMGRTPLHAAVSADAQGVFQ 107

Query: 94  FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
            L+ + A  ++++    +TPL  A      G+++ L+   AD    +  G + L  A   
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
            +      LL   A+ + ++++  T L   A  GS E  K+LL H A  D+ D     P 
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 227

Query: 212 LAAAVVGHQHIVEYLI--GLNIV 232
             A    H  IV  L     +  
Sbjct: 228 DIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  174 bits (444), Expect = 2e-54
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 25/215 (11%)

Query: 34  GATPLIMACRNG-------------HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPL 80
           G TPL++A  +G                ++   + +        GA + +     G   L
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--------GASLHNQTDRTGETAL 61

Query: 81  WCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSN 139
             AA        + L+E  A  N +     TPL AA      GV + L+ + A D +   
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T L++A       +++ L++ +AD+N     G +ALH  A   +++   +LL +GA
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
             D+ ++   TPL  AA  G     + L+    N 
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  132 bits (334), Expect = 5e-38
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPLI+A R   + ++E L+    ADV              G   L  AAA  ++    
Sbjct: 124 GTTPLILAARLAVEGMLEDLI-NSHADVNAV--------DDLGKSALHWAAAVNNVDAAV 174

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+++GA  + +     TPL  A  +G +   K L++H A+ ++++        IA  + 
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234

Query: 154 HYRIVKYLLSLNADMNRK 171
           H+ IV+ L   +   +  
Sbjct: 235 HHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (297), Expect = 2e-32
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 20/149 (13%)

Query: 102 VNSKTRTNSTPLRAACFDGHFG-------------VVKYLVEHGADFE-VSNRHGHTCLM 147
           VN +     TPL  A   G                V+   +  GA     ++R G T L 
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---D 204
           +A         K LL  +AD N + + G T LH    A +  + ++L+ + A  D+    
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-TDLDARM 121

Query: 205 SYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
             G TPL+ AA +  + ++E LI    ++
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADV 150

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.4 bits (215), Expect = 1e-20
 Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 15/109 (13%)

Query: 134 DFEVSNRHGHTCLMIACYKGHYR-------------IVKYLLSLNAD-MNRKSSKGNTAL 179
           D  V    G T LMIA   G                ++   +   A   N+    G TAL
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 180 HDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           H  A     +  K LL   A  ++ D+ G TPL AA     Q + + LI
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  182 bits (466), Expect = 8e-59
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 9/171 (5%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
             +  +      G    +   + E +  +  T          EG  PL  AAA G + +V
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRI-EQENVINHT--------DEEGFTPLMWAAAHGQIAVV 52

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           +FL+++GA      +   + L  AC  G+  +VK L++ G D    + +G T L+ A + 
Sbjct: 53  EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
            H + VK LL   AD   ++  G  ++      G   + +++ SH  ++  
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  174 bits (444), Expect = 1e-55
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            +   AA G +  +   +E    +N       TPL  A   G   VV++L+++GAD ++ 
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
            +   + L +AC KG+  IVK LL    D+N     G T L        ++ +K+LL  G
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           A   +    G   +  A  +G++ + + + 
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  149 bits (378), Expect = 1e-45
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 9/138 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL+ A  +G   +VE+L++   AD +                 L  A + G+  IV+
Sbjct: 36  GFTPLMWAAAHGQIAVVEFLLQN-GADPQLL--------GKGRESALSLACSKGYTDIVK 86

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L++ G  VN       TPL  A    H   VK L+E GAD  +    G+  + +A   G
Sbjct: 87  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

Query: 154 HYRIVKYLLSLNADMNRK 171
           +  + + + S    + + 
Sbjct: 147 YRSVQQVIESHLLKLLQN 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  139 bits (352), Expect = 1e-41
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM 168
           NS  +      G    +   +E       ++  G T LM A   G   +V++LL   AD 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
                   +AL      G  +I+K+LL  G  ++  D  G TPLL A    H   V+ L+
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  110 bits (278), Expect = 1e-30
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             + L +AC  G+ +IV+ L+ +C  DV E            G  PL  A    H+  V+
Sbjct: 69  RESALSLACSKGYTDIVKMLL-DCGVDVNEY--------DWNGGTPLLYAVHGNHVKCVK 119

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR 140
            L+E GA    +T +    +  A   G+  V + +  H      + +
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  186 bits (474), Expect = 2e-58
 Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 30/218 (13%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               LI A +N   ++V+ L+ E  A+V        + E   G  PL  A       IV+
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQ-----EEEG--GWTPLHNAVQMSREDIVE 56

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+ HGA    + +  +TP   A   G   ++K  +  GAD    + +G T  M A   G
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 154 HYRIVKYLLSLNADMNRK----------SSKGNTALHDCAEAGSIEILKLLLSH-GARMD 202
             + +K+L    A++N +             G TAL D AE G +E+LK+LL   GA  D
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA--D 174

Query: 203 V---DSYGMTPLLAAAVVGHQ----HIVEYLI--GLNI 231
           V   D+ G   L+ A +         I   L+  G ++
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  184 bits (471), Expect = 5e-58
 Identities = 64/213 (30%), Positives = 91/213 (42%), Gaps = 25/213 (11%)

Query: 31  KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
           + GG TPL  A +   ++IVE L+    AD               GA P   AA AG + 
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLL-RHGADPVLR--------KKNGATPFLLAAIAGSVK 86

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD----------FEVSNR 140
           +++  +  GA VN       T    A   G    +K+L + GA+           E   +
Sbjct: 87  LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146

Query: 141 HGHTCLMIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSI----EILKLLL 195
            G T LM A  KGH  ++K LL  + AD+N   + G  AL     +        I  LLL
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206

Query: 196 SHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
            HGA ++V    G TPL+ A    H  +V+ L+
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  178 bits (454), Expect = 1e-55
 Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 26/211 (12%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           GATP ++A   G  ++++  +    ADV E         T         AA  G +  ++
Sbjct: 72  GATPFLLAAIAGSVKLLKLFL-SKGADVNECDF---YGFT-----AFMEAAVYGKVKALK 122

Query: 94  FLVEHGAKVNSKTRTNS----------TPLRAACFDGHFGVVKYLVEH-GADFEVSNRHG 142
           FL + GA VN + +T            T L  A   GH  V+K L++  GAD    +  G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 143 HTCLMIACYKGHYR----IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH- 197
              L+ A           I   LL   AD+N +  +G T L    E   + +++ LL   
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 198 GARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
              ++  DS G T LL A  +  + I E L 
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  165 bits (421), Expect = 1e-50
 Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 15/174 (8%)

Query: 73  TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS-TPLRAACFDGHFGVVKYLVEH 131
            VE    L  A     + +VQ L+E GA VN +      TPL  A       +V+ L+ H
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
           GAD  +  ++G T  ++A   G  +++K  LS  AD+N     G TA  + A  G ++ L
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 192 KLLLSHGA-----------RMDVDSYGMTPLLAAAVVGHQHIVEYLI---GLNI 231
           K L   GA           +  +   G T L+ AA  GH  +++ L+   G ++
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  161 bits (411), Expect = 4e-49
 Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETG--AVMFDHETVEGAPPLWCAAAAGHLPI 91
           G T  + A   G  + +++L K   A+V          +     GA  L  AA  GH+ +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 92  VQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFG----VVKYLVEHGADFEVSNRHGHTCL 146
           ++ L++  GA VN+        L  A           +   L++HGAD  V    G T L
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

Query: 147 MIACYKGHYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           ++A  K H  +V+ LL   + ++N   S G TAL    E    +I +LL   GA
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  134 bits (340), Expect = 2e-38
 Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 13/144 (9%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH---- 88
           GGAT L+ A   GH E+++ L+ E  ADV              G   L  A  +      
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNA--------CDNMGRNALIHALLSSDDSDV 198

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLM 147
             I   L++HGA VN +     TPL  A    H G+V+ L+E    +   ++  G T L+
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 148 IACYKGHYRIVKYLLSLNADMNRK 171
           +A      +I + L    A  +  
Sbjct: 259 LAVELKLKKIAELLCKRGASTDCG 282

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  183 bits (467), Expect = 4e-58
 Identities = 34/218 (15%), Positives = 68/218 (31%), Gaps = 14/218 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G   L    R   ++     +      V+                 L  ++  G   +VQ
Sbjct: 5   GQVSLPPGKRTNLRKTGSERI-AHGMRVKFN----PLPLA-----LLLDSSLEGEFDLVQ 54

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            ++      +       T L  A   GH  +VK+LV+ G +   ++  G T L  A    
Sbjct: 55  RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114

Query: 154 HYRIVKYLLSLNADMNRKSSKGN---TALHDCAEAGSIEILKLLLSHGARMDV-DSYGMT 209
           + ++ K+L+   A +   +           +  E G  +  + L     +M + +   + 
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIY 174

Query: 210 PLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGAS 247
            L          +         +  +E  D +E   A 
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 212

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  158 bits (403), Expect = 2e-48
 Identities = 44/197 (22%), Positives = 67/197 (34%), Gaps = 18/197 (9%)

Query: 29  KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
           KF       L+ +   G  ++V+ ++ E   D              EG   L  A  AGH
Sbjct: 32  KFNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP--------NDEGITALHNAVCAGH 82

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR---HGHTC 145
             IV+FLV+ G  VN+      TPL  A    +  V K+LVE GA               
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142

Query: 146 LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-- 203
                 +G+ +  ++L  +   M   +     AL D       E   L +  G  M +  
Sbjct: 143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIH 199

Query: 204 -DSYGMTPLLAAAVVGH 219
            +         A +   
Sbjct: 200 REDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 10/114 (8%), Positives = 25/114 (21%), Gaps = 24/114 (21%)

Query: 23  EIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC 82
            +  +T      A         G+ +  ++L    +  +                  LW 
Sbjct: 128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIM--------NKGVIYALWD 178

Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE 136
                   +    ++ G  +    R                 +++      D E
Sbjct: 179 YEPQNDDEL---PMKEGDCMTIIHR------------EDEDEIEWWWARLNDKE 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  181 bits (463), Expect = 1e-57
 Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 11/196 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L +A R    +  + L+ E  AD               G  PL  A +A    + Q
Sbjct: 25  GETALHLAARYSRSDAAKRLL-EASADANIQ--------DNMGRTPLHAAVSADAQGVFQ 75

Query: 94  FLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
            L+ + A  ++++    +TPL  A      G+++ L+   AD    +  G + L  A   
Sbjct: 76  ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
            +      LL   A+ + ++++  T L   A  GS E  K+LL H A  D+ D     P 
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 195

Query: 212 LAAAVVGHQHIVEYLI 227
             A    H  IV  L 
Sbjct: 196 DIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  166 bits (422), Expect = 2e-51
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 10/185 (5%)

Query: 45  GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNS 104
               ++   + +        GA + +     G   L  AA        + L+E  A  N 
Sbjct: 2   DAPAVISDFIYQ--------GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 53

Query: 105 KTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLS 163
           +     TPL AA      GV + L+ + A D +     G T L++A       +++ L++
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113

Query: 164 LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHI 222
            +AD+N     G +ALH  A   +++   +LL +GA  D+ ++   TPL  AA  G    
Sbjct: 114 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYET 173

Query: 223 VEYLI 227
            + L+
Sbjct: 174 AKVLL 178

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  162 bits (412), Expect = 5e-50
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 8/166 (4%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL  A     + + + L++    D++            +G  PL  AA      +++
Sbjct: 58  GRTPLHAAVSADAQGVFQILIRNRATDLDAR--------MHDGTTPLILAARLAVEGMLE 109

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+   A VN+      + L  A    +      L+++GA+ ++ N    T L +A  +G
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            Y   K LL   A+ +              E    +I++LL  +  
Sbjct: 170 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  139 bits (353), Expect = 4e-41
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 5/151 (3%)

Query: 86  AGHLPIVQFLVEHGAKV-NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT 144
                ++   +  GA + N   RT  T L  A         K L+E  AD  + +  G T
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 145 CLMIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
            L  A       + + L+   A D++ +   G T L   A      +L+ L++  A ++ 
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
            D  G + L  AA V +      L+  G N 
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  131 bits (333), Expect = 4e-38
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 16/147 (10%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPLI+A R   + ++E L+    ADV              G   L  AAA  ++    
Sbjct: 92  GTTPLILAARLAVEGMLEDLI-NSHADVNAV--------DDLGKSALHWAAAVNNVDAAV 142

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+++GA  + +     TPL  A  +G +   K L++H A+ ++++        IA  + 
Sbjct: 143 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALH 180
           H+ IV+ L   N          +  LH
Sbjct: 203 HHDIVRLLDEYNLV-------RSPQLH 222

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  178 bits (454), Expect = 2e-55
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 20/202 (9%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
              PL  A      +IV+ L+     D  +           +G   L+ A  +G++  V+
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFS-GLDDSQF--------DDKGNTALYYAVDSGNMQTVK 112

Query: 94  FLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
             V+   ++    +T   T    A       +V Y +              +C+ I    
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIHITIKN 171

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNT-ALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPL 211
           GH  ++  LL      N  +S      +    +   IE+L+ L  +    ++     +  
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI--NIY----SAN 225

Query: 212 LAAAVVGHQHIVEYLI--GLNI 231
           L   ++    I + +I   +  
Sbjct: 226 LENVLLDDAEIAKMIIEKHVEY 247

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  171 bits (437), Expect = 6e-53
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 15/195 (7%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G     +       + ++  +     D  +          V G    + A A  ++ +V 
Sbjct: 1   GMDLSRIN--TWKSKQLKSFLS--SKDTFKA--------DVHGHSASYYAIADNNVRLVC 48

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  GA  N     N  PL  A       +VK L+  G D    +  G+T L  A   G
Sbjct: 49  TLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106

Query: 154 HYRIVKYLLSLNADMNRKSSKG-NTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLL 212
           + + VK  +  N  +      G  T+ +       + I+   LS        +  ++ + 
Sbjct: 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIH 166

Query: 213 AAAVVGHQHIVEYLI 227
                GH  ++  L+
Sbjct: 167 ITIKNGHVDMMILLL 181

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  156 bits (396), Expect = 8e-47
 Identities = 25/202 (12%), Positives = 62/202 (30%), Gaps = 20/202 (9%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L  A  +G+ + V+  VK+    +   G      +T       + A     + IV 
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGK--TGWKT-----SFYHAVMLNDVSIVS 146

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT-CLMIACYK 152
           + +              + +     +GH  ++  L+++      +N       + +A   
Sbjct: 147 YFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN 205

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
               +++ L   + +         +A  +       EI K+++                +
Sbjct: 206 KDIEMLQALFKYDIN-------IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

Query: 212 LAAAVVGHQHIVEYLIGLNIVS 233
           +         I+     L ++ 
Sbjct: 259 VKNN--KLDEIISKNKELRLMY 278

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  135 bits (342), Expect = 8e-39
 Identities = 19/159 (11%), Positives = 48/159 (30%), Gaps = 18/159 (11%)

Query: 31  KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
           K G  T    A       IV Y + E               +       +      GH+ 
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLSE--------IPS--TFDLAILLSCIHITIKNGHVD 175

Query: 91  IVQFLVEHGAKVNSKTRTNSTP-LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
           ++  L+++    N+       P ++ A  +    +++ L ++  +        ++  +  
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-------IYSANLEN 228

Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
                  I K ++  + +    S   +  +    +   I
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  174 bits (443), Expect = 3e-55
 Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 13/186 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               +   CR G+   V   +   + D+ +            G  PL  A   G   +V+
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQG--------DDHGFSPLHWACREGRSAVVE 56

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  GA++N   R + TPL  A   GH  +V+ L+++ AD    N HG+  L  AC+ G
Sbjct: 57  MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLA 213
             ++ + L++  A ++  +  G   +          + +     G   +++     P   
Sbjct: 117 QDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ--NLNR---IPYKD 171

Query: 214 AAVVGH 219
               G 
Sbjct: 172 TFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  161 bits (411), Expect = 2e-50
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
           E    ++     G+   V+  +++    +N       +PL  AC +G   VV+ L+  GA
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
              V NR   T L +A   GH  IV+ LL   AD+N  +  GN  LH     G  ++ + 
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123

Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           L+++GA + + + YG  P+  A     + + E   
Sbjct: 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  108 bits (272), Expect = 1e-29
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           G  TPL +A  +GH++IV+ L++  KAD+              G  PL  A   G   + 
Sbjct: 71  GDDTPLHLAASHGHRDIVQKLLQ-YKADINAV--------NEHGNVPLHYACFWGQDQVA 121

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           + LV +GA V+   +    P+  A       + +   + G +                +K
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL------NRIPYKDTFWK 175

Query: 153 GHYR 156
           G  R
Sbjct: 176 GTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 61.3 bits (150), Expect = 6e-12
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
           S +    +      G+   ++L L +    D+   D +G +PL  A   G   +VE LI
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  175 bits (447), Expect = 4e-55
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 19/203 (9%)

Query: 34  GATPLIMACRNGHK-EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
              PL  AC      ++ E L  +  + + +           +G  PL  + +     I 
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSK-PSLLLQK--------DQDGRIPLHWSVSFQAHEIT 52

Query: 93  QFLVEHGAKVNSKTRTN---STPLRAACFDGHFGVVKYLVEH--GADFEVSNRHGHTCLM 147
            FL+     VN     +    TP   AC  G+  VVK L +     D       G TCL 
Sbjct: 53  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112

Query: 148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---D 204
           +A  K  + + ++L+   A +  K       LH  A  GS+++++LL   G    V   D
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-AVNWQD 171

Query: 205 SYGMTPLLAAAVVGHQHIVEYLI 227
             G TPL  A   GH      L+
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLV 194

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  175 bits (446), Expect = 5e-55
 Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 14/199 (7%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G  PL  +      EI  +L+ +   +V        D+    G  P   A + G+L +V+
Sbjct: 36  GRIPLHWSVSFQAHEITSFLLSK-MENVNLD-----DYPDDSGWTPFHIACSVGNLEVVK 89

Query: 94  FLVEH--GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY 151
            L +      +N  T    T L  A     F V ++L+E+GA   + ++     L  A  
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149

Query: 152 KGHYRIVKYLLSL-NADMNRKSSKGNTALHDCAEAGSIEILKLLLS-HGARMDV-DSYGM 208
            G  ++++ L  L  + +N +  +G T L      G  +   LL+  +GA  D+ D+ G 
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209

Query: 209 TPLLAAAVVGHQHIVEYLI 227
                A    ++ + ++ +
Sbjct: 210 KAEDVAL---NEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  156 bits (398), Expect = 9e-48
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 14/167 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLV-KECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           G TP  +AC  G+ E+V+ L  +  K D+ +         T +G   L  A       + 
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------TNQGVTCLHLAVGKKWFEVS 123

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLMIACY 151
           QFL+E+GA V  K + N  PL  A   G   +++ L   G +     ++ G T L  A  
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183

Query: 152 KGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +GH      L+    A+ +   +KG  A      A + ++ K  L++
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV---ALNEQVKKFFLNN 227

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  174 bits (444), Expect = 8e-55
 Identities = 43/201 (21%), Positives = 79/201 (39%), Gaps = 16/201 (7%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G   +  A         + L  E + D+           T       W   + G   ++ 
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIE-EGDIIY--------ITDMSDTNWWKGTSKGRTGLI- 61

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
                   V  +  +   PL  A   G+   ++  +++       ++ G T L  AC+ G
Sbjct: 62  ----PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117

Query: 154 HYRIVKYLLS-LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
           H  IV+ L +  N ++N+++  G+TALH  A  G  +I++LLL+ GAR D+ +       
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177

Query: 212 LAAAVVGHQHIVEYLIGLNIV 232
             A       +++   G + V
Sbjct: 178 DMATNAACASLLKKKQGTDAV 198

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  163 bits (415), Expect = 2e-50
 Identities = 39/190 (20%), Positives = 68/190 (35%), Gaps = 16/190 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             T        G   ++       +A+  +               PL  AA  G+L  ++
Sbjct: 45  SDTNWWKGTSKGRTGLIPSNYVAEQAESIDN--------------PLHEAAKRGNLSWLR 90

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLMIACYK 152
             +++   VN   +  ST L  AC  GH  +V+ L      +    N+ G T L  A +K
Sbjct: 91  ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPL 211
           G+  IV+ LL+  A  + ++ +   A      A    +LK      A     ++      
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

Query: 212 LAAAVVGHQH 221
             + +  H H
Sbjct: 211 EDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  104 bits (262), Expect = 1e-27
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 6/126 (4%)

Query: 103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLL 162
               +     +  A +         L     D         T       KG   ++    
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPS-- 63

Query: 163 SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQH 221
                +  ++   +  LH+ A+ G++  L+  L +   ++  D  G T L  A   GH+ 
Sbjct: 64  ---NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD 120

Query: 222 IVEYLI 227
           IVE L 
Sbjct: 121 IVEMLF 126

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  172 bits (440), Expect = 1e-54
 Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 16/195 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G     +       + +++L +  +     T              PL  A   G    + 
Sbjct: 8   GEIVEKIKDEKSINQNLDFL-RNYRDSYNRT--------------PLMVACMLGMENAID 52

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            LVE+  K+  K    ST L  A  +   G+ + L+  G++    +  G T LM +   G
Sbjct: 53  KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG 112

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           +  +  +LL   A++N ++ +G T L   ++ G  EI+K LL  GA +   D  G+T   
Sbjct: 113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172

Query: 213 AAAVVGHQHIVEYLI 227
           +A + G Q +++   
Sbjct: 173 SARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  165 bits (420), Expect = 1e-51
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 9/166 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL++AC  G +  ++ LV E    +E+          +EG+  L  A     L I +
Sbjct: 35  NRTPLMVACMLGMENAIDKLV-ENFDKLEDK--------DIEGSTALIWAVKNNRLGIAE 85

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  G+ VN+K  +  TPL  +   G+  +  +L+EHGA+    N  G T L++A   G
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
              IVK LL L AD++ +   G TA       G  E++K+      
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 50.1 bits (121), Expect = 9e-08
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI- 227
           +     G        E    + L  L ++      DSY  TPL+ A ++G ++ ++ L+ 
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYR-----DSYNRTPLMVACMLGMENAIDKLVE 56

Query: 228 -GLNI 231
               +
Sbjct: 57  NFDKL 61

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  178 bits (454), Expect = 1e-54
 Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 25/210 (11%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL++A     + +V YL+K   AD                   L  AAA     ++ 
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKA-GADPTI--------YNKSERSALHQAAANRDFGMMV 216

Query: 94  FLVEH---GAKVNSKTRTNSTPLRAACFDGHFG---VVKYLVEHGAD--------FEVSN 139
           +++        +    R   T L     +         K LVE GA          +   
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276

Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
             G T L  A    +  IVKYL+    ++ +++   G T +   A+ G IE++  L+  G
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336

Query: 199 ARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           A ++ VD+   T    A    H +IV+   
Sbjct: 337 ASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  174 bits (443), Expect = 7e-53
 Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 17/210 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             T L     N   E  E L+     +    GA   +    +   PL  A  A    +V 
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAMDCDENTPLMLAVLARRRRLVA 183

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH---GADFEVSNRHGHTCLMIAC 150
           +L++ GA      ++  + L  A  +  FG++ Y++       D E  +R+G T LMI  
Sbjct: 184 YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243

Query: 151 YKGHY---RIVKYLLSLNADMNR--------KSSKGNTALHDCAEAGSIEILKLLLSH-G 198
           +          K L+   A ++         +  KG TALH  A+  ++ I+K L+   G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           +  D  D  G TP++ AA  G   +V YLI
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 333

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  167 bits (425), Expect = 3e-50
 Identities = 50/217 (23%), Positives = 78/217 (35%), Gaps = 34/217 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L      G   I E + +E   ++ +                L   A+       +
Sbjct: 94  SPIKLHTEA-AGSYAITEPITRE-SVNIIDPR---------HNRTVLHWIASNSSAEKSE 142

Query: 94  FLVEH--------GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTC 145
            L+ H        GA VN+     +TPL  A       +V YL++ GAD  + N+   + 
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202

Query: 146 LMIACYKGHYRIVKYLLS---LNADMNRKSSKGNTALHDCAEAGS---IEILKLLLSHGA 199
           L  A     + ++ Y+L+   L  D+      G TAL   A       +   KLL+  GA
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 200 ---------RMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
                    +      G T L  AA V +  IV+YL+
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  166 bits (423), Expect = 6e-50
 Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 28/216 (12%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
               P      NG+  + ++          E           E    L   AA G   I 
Sbjct: 60  YSLYPNPQGYGNGNDFLGDFNHT-NLQIPTE--------PEPESPIKLHTEAA-GSYAIT 109

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV--------KYLVEHGADFEVSNRHGHT 144
           + +      +    R N T L     +              K  +  GAD    +   +T
Sbjct: 110 EPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168

Query: 145 CLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH---GARM 201
            LM+A      R+V YL+   AD    +    +ALH  A      ++  +L+       +
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228

Query: 202 DV-DSYGMTPLLAAAVVGHQ---HIVEYLI--GLNI 231
           +  D  GMT L+  A    +      + L+  G  +
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  153 bits (389), Expect = 6e-45
 Identities = 28/205 (13%), Positives = 56/205 (27%), Gaps = 33/205 (16%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L+ A  +G+ +     ++                       P       G+  +  
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQH------------------YSLYPNPQGYGNGNDFLGD 78

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
           F   +          +   L      G + + + +     +  +  RH  T L       
Sbjct: 79  FNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVN-IIDPRHNRTVLHWIASNS 136

Query: 154 HYRIV--------KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-- 203
                        K  ++  AD+N      NT L     A    ++  L+  GA  D   
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA--DPTI 194

Query: 204 -DSYGMTPLLAAAVVGHQHIVEYLI 227
            +    + L  AA      ++ Y++
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYML 219

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  152 bits (387), Expect = 1e-44
 Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 24/185 (12%)

Query: 34  GATPLIMACRNGHKEIVEYLV--KECKADVEETGAVMFDHETVEGAPPLWCAAAAGH--- 88
             + L  A  N    ++ Y++   + K D+EE            G   L   A       
Sbjct: 199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL--------DRNGMTALMIVAHNEGRDQ 250

Query: 89  LPIVQFLVEHGAKVNSKTRTNS--------TPLRAACFDGHFGVVKYLVEH-GADFEVSN 139
           +   + LVE GAKV+               T L  A    +  +VKYLV   G++ +  +
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310

Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
             G T +M+A  +G   +V YL+   A +    +  +TA           I+ +      
Sbjct: 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

Query: 200 RMDVD 204
             + +
Sbjct: 371 --ERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  103 bits (260), Expect = 3e-26
 Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 10/129 (7%)

Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
             K +    ++   L  A +DG+    +  ++H         +           G+  + 
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKRQRNELQH---------YSLYPNPQGYGNGNDFLG 77

Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVG 218
            +  +          +    LH    AGS  I + +      +    +  T L   A   
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLH-TEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNS 136

Query: 219 HQHIVEYLI 227
                E LI
Sbjct: 137 SAEKSEDLI 145

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  171 bits (437), Expect = 5e-53
 Identities = 44/210 (20%), Positives = 62/210 (29%), Gaps = 25/210 (11%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L +A   G    VE L     A V           T      L  A          
Sbjct: 45  GQTALHLAAILGEASTVEKLYAA-GAGVLVAE---RGGHT-----ALHLACRVRAHTCAC 95

Query: 94  FLVEHGAKVNSKTRTNSTP--------------LRAACFDGHFGVVKYLVEHGADFEVSN 139
            L++                                +  +          +     E  N
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHG 198
             GHT L +A       +V+ L    AD+N+     G T LH   EA +  +L+LLL  G
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215

Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           A        G TPL +A +  +  +   L 
Sbjct: 216 ADPTARMYGGRTPLGSALLRPNPILARLLR 245

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  167 bits (426), Expect = 2e-51
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 9/201 (4%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMF-----DHETVEGAPPLWCAAAAGH 88
           G T L +ACR         L+ + +       +  +     D        P    +    
Sbjct: 78  GHTALHLACRVRAHTCACVLL-QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136

Query: 89  LP-IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF-EVSNRHGHTCL 146
                    +   ++ ++     TPL  A       +V+ L + GAD  +     G T L
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196

Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DS 205
            +A       +++ LL   AD   +   G T L       +  + +LL +HGA       
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG 256

Query: 206 YGMTPLLAAAVVGHQHIVEYL 226
             ++P  ++         +  
Sbjct: 257 DKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  165 bits (419), Expect = 3e-50
 Identities = 43/218 (19%), Positives = 69/218 (31%), Gaps = 28/218 (12%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L +A  + H+  +++L+    A  E       D +   G   L  AA  G    V+
Sbjct: 9   GDTALHLAVIHQHEPFLDFLL-GFSAGHEYL-----DLQNDLGQTALHLAAILGEASTVE 62

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG----------- 142
            L   GA V    R   T L  AC          L++                       
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 143 ---HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
                  + +                  +  ++  G+T LH        E+++LL   GA
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 200 RMDVDS----YGMTPLLAAAVVGHQHIVEYLI--GLNI 231
             D++      G TPL  A       ++E L+  G + 
Sbjct: 183 --DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  146 bits (372), Expect = 3e-43
 Identities = 40/177 (22%), Positives = 58/177 (32%), Gaps = 18/177 (10%)

Query: 69  FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK---VNSKTRTNSTPLRAACFDGHFGVV 125
           F + T +G   L  A    H P + FL+   A    ++ +     T L  A   G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 126 KYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNT-------- 177
           + L   GA   V+ R GHT L +AC    +     LL       R +S            
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 178 ------ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
                 A  D       E          +++  +  G TPL  A +     +V  L 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  136 bits (344), Expect = 4e-39
 Identities = 29/169 (17%), Positives = 50/169 (29%), Gaps = 10/169 (5%)

Query: 31  KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
               A   + +  N   E         +  +E            +G  PL  A       
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDW-RLQLEAE--------NYDGHTPLHVAVIHKDAE 172

Query: 91  IVQFLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
           +V+ L + GA +N    T   TPL  A       V++ L++ GAD       G T L  A
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
             + +  + + L +  A          +           +       + 
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 95.3 bits (238), Expect = 1e-23
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 4/116 (3%)

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM---NRKSSKGNTALHDCAEAGSIEIL 191
           F      G T L +A    H   + +LL  +A     + ++  G TALH  A  G    +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 192 KLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGA 246
           + L + GA + V +  G T L  A  V        L+       ++  D       
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 8e-20
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 29  KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
                G TPL +A       ++E L+ +  AD               G  PL  A    +
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTAR--------MYGGRTPLGSALLRPN 237

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHG 132
             + + L  HGA          +P  ++  D          E+ 
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  168 bits (429), Expect = 2e-52
 Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 21/206 (10%)

Query: 34  GATPLIMACRNGHK----EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHL 89
           G + L +A  +  K    E++  +  +  A +          +T     PL  A      
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQN---NLQQT-----PLHLAVITNQP 58

Query: 90  PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF------EVSNRHGH 143
            I + L+  G     +    +TPL  AC  G    V  L +           + +N +GH
Sbjct: 59  EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMD 202
           TCL +A   G+  IV+ L+SL AD+N +    G TALH   +  + +++ LLL  GA ++
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178

Query: 203 -VDSYGMTPLLAAAVVGHQHIVEYLI 227
            V   G +P           I + L 
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLG 204

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  147 bits (374), Expect = 4e-44
 Identities = 45/199 (22%), Positives = 64/199 (32%), Gaps = 17/199 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL +A      EI E L+     D E             G  PL  A   G L  V 
Sbjct: 45  QQTPLHLAVITNQPEIAEALLG-AGCDPELR--------DFRGNTPLHLACEQGCLASVG 95

Query: 94  FLVEHGA------KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF-EVSNRHGHTCL 146
            L +          + +      T L  A   G+ G+V+ LV  GAD       +G T L
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155

Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA-RMDVDS 205
            +A    +  +V  LL   AD+NR + +G +         S  I + L       + +  
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

Query: 206 YGMTPLLAAAVVGHQHIVE 224
                             E
Sbjct: 216 ESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 81.1 bits (201), Expect = 9e-19
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 139 NRHGHTCLMIACYKGH----YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
              G + L +A           +++ +    A +N +++   T LH        EI + L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 195 LSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           L  G   ++ D  G TPL  A   G    V  L 
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 98

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.6 bits (166), Expect = 9e-14
 Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 42/126 (33%)

Query: 29  KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH 88
           +    G T L +A    + ++V                                      
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVS------------------------------------- 168

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI 148
                 L++ GA VN  T    +P +         + + L +   +              
Sbjct: 169 -----LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223

Query: 149 ACYKGH 154
                 
Sbjct: 224 DTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 171 KSSKGNTALHDCAEAGS----IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY 225
            +  G++ LH           +E+++ +    A ++  ++   TPL  A +     I E 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 226 LI 227
           L+
Sbjct: 64  LL 65

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  172 bits (439), Expect = 2e-52
 Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 26/210 (12%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               + +A R G  + V  L+ E                   G   L  A   G +   +
Sbjct: 20  NMEKIHVAARKGQTDEVRRLI-ETGVSPTIQ--------NRFGCTALHLACKFGCVDTAK 70

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
           +L   G   +        P+  A       +V  LVE   +       G     +     
Sbjct: 71  YLASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNECD 122

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG--SIEILKLLLSHGARMDV-DSYGMTP 210
              + +         + K  KG TALH C   G   +E++K+L+  GA     D    TP
Sbjct: 123 EREVNE------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176

Query: 211 LLAAAVVGHQHIVEYLIGLNIVSRKEKIDA 240
           L+ A    ++  ++ ++         ++D 
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  171 bits (437), Expect = 4e-52
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 30/215 (13%)

Query: 34  GATPLIMACRNG--HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPI 91
           G T L      G  + E+++ LV+   A                   PL  A    +   
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDK--------ADETPLMRAMEFRNREA 188

Query: 92  VQFLVE-----HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           +  +++        +++   +  ++ L  A       V    VE G D  + +      L
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL 248

Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSK-------------GNTALHDCAEAGSIEILKL 193
            ++       + K LL        ++                   +   A+    E+L+L
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308

Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           L      +    + G    +         +    +
Sbjct: 309 LQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  161 bits (409), Expect = 7e-48
 Identities = 25/199 (12%), Positives = 59/199 (29%), Gaps = 26/199 (13%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECK----ADVEETGAVMFDHETVEGAPPLWCAAAAGHL 89
             TPL+ A    ++E ++ ++          ++            +G   L  A      
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA--------NKQGNSHLHWAILINWE 224

Query: 90  PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH------ 143
            +    VE G  VN +   ++ PL  +       + K L++    F +     H      
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284

Query: 144 -------TCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLS 196
                    +  A       +++ L     ++ R  + G        +  +  + ++ L+
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344

Query: 197 HGARMDV-DSYGMTPLLAA 214
             A +             +
Sbjct: 345 PSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  158 bits (401), Expect = 8e-47
 Identities = 41/202 (20%), Positives = 65/202 (32%), Gaps = 31/202 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L +AC+ G  +  +YL           G     H    G  P+  A  A    +V 
Sbjct: 53  GCTALHLACKFGCVDTAKYLASV--------GE---VHSLWHGQKPIHLAVMANKTDLVV 101

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            LVE   +          P           V +          V +  G T L      G
Sbjct: 102 ALVEGAKER------GQMPESLLNECDEREVNEIGS------HVKHCKGQTALHWCVGLG 149

Query: 154 --HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL-----SHGARMDV-DS 205
             +  ++K L+ L A    K     T L    E  + E L L++         R+D  + 
Sbjct: 150 PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 206 YGMTPLLAAAVVGHQHIVEYLI 227
            G + L  A ++  + +    +
Sbjct: 210 QGNSHLHWAILINWEDVAMRFV 231

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (324), Expect = 2e-35
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 7/130 (5%)

Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI 157
                      N   +  A   G    V+ L+E G    + NR G T L +AC  G    
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDT 68

Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVV 217
            KYL S+    +     G   +H    A   +++  L+           G  P       
Sbjct: 69  AKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKE-----RGQMPESLLNEC 121

Query: 218 GHQHIVEYLI 227
             + + E   
Sbjct: 122 DEREVNEIGS 131

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  166 bits (423), Expect = 2e-52
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L+ A R G  + V  L+    ADV              G  PL  AA  GHL IV+
Sbjct: 14  LGKKLLEAARAGRDDEVRILM-ANGADVNAE--------DASGWTPLHLAAFNGHLEIVE 64

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+++GA VN+      TPLR A   GH  +V+ L+++GAD   ++  GHT L +A   G
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           H  IV+ LL   AD+N +   G TA     + G+ ++ ++L   
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  164 bits (419), Expect = 9e-52
 Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 1/153 (0%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  AA AG    V+ L+ +GA VN++  +  TPL  A F+GH  +V+ L+++GAD    
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           +  G T L +A   GH  IV+ LL   AD+N    +G+T LH  A  G +EI+++LL +G
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN 230
           A ++  D +G T    +   G++ + E L  LN
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  134 bits (341), Expect = 6e-40
 Identities = 49/138 (35%), Positives = 66/138 (47%), Gaps = 12/138 (8%)

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
                HG+ +          L  A   G    V+ L+ +GAD    +  G T L +A + 
Sbjct: 5   HHHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMT 209
           GH  IV+ LL   AD+N     G T L   A  G +EI+++LL +GA  DV   D  G T
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA--DVNANDMEGHT 115

Query: 210 PLLAAAVVGHQHIVEYLI 227
           PL  AA+ GH  IVE L+
Sbjct: 116 PLHLAAMFGHLEIVEVLL 133

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  170 bits (433), Expect = 3e-52
 Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 18/204 (8%)

Query: 31  KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
           KF      + AC +G  E V  L++   AD+            V+G   L  A    ++ 
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLER-GADINYA--------NVDGLTALHQACIDDNVD 87

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
           +V+FLVE+GA +N        PL AA   G+  + +YL+  GA     N  G T L IA 
Sbjct: 88  MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE 147

Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMT 209
            +    +++        +NR+      A  +       +  + L S           G T
Sbjct: 148 EEAMEELLQNE------VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201

Query: 210 PLLAAAVVGHQHIVEYLI--GLNI 231
            L  AA  G+  +++ LI    ++
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDV 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  166 bits (423), Expect = 1e-50
 Identities = 45/203 (22%), Positives = 78/203 (38%), Gaps = 17/203 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
                 +    G +  +E  V + +   +            +GA  L  A ++G    V 
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVK-RKKTKVK--------FDDGAVFLA-ACSSGDTEEVL 57

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+E GA +N       T L  AC D +  +VK+LVE+GA+    +  G   L  A   G
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLA 213
           +  I +YL+S  A +   +S+G+T L    E    E+L+  ++                 
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-----GVDIEAARKE 172

Query: 214 AAVVGHQHIVEYLI--GLNIVSR 234
              +  +   ++L    +N V  
Sbjct: 173 EERIMLRDARQWLNSGHINDVRH 195

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  161 bits (409), Expect = 1e-48
 Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 20/208 (9%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G  PL  A   G+ +I EYL+ +  A V             EG  PL  A       ++Q
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQ-GAHVGA--------VNSEGDTPLDIAEEEAMEELLQ 156

Query: 94  FLV-EHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
             V   G  +           +           ++L     +     + G T L +A  K
Sbjct: 157 NEVNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK 209

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPL 211
           G+  ++K L+    D+N K   G T LH  A  G  E  ++L+ +   M+ V+  G T  
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

Query: 212 LAAAVVGHQHIVEYLI--GLNIVSRKEK 237
             A      ++ E      L    ++EK
Sbjct: 270 DVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  153 bits (389), Expect = 1e-45
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 2/159 (1%)

Query: 70  DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
                +           G    ++  V    K   K   +     AAC  G    V  L+
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLL 60

Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
           E GAD   +N  G T L  AC   +  +VK+L+   A++N+  ++G   LH  A  G ++
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120

Query: 190 ILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           I + L+S GA +  V+S G TPL  A     + +++  +
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           M    +K           GS   L+  +    +  V        LAA   G    V  L+
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 228 --GLNI 231
             G +I
Sbjct: 61  ERGADI 66

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 9/77 (11%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL  A   G +E    LV E   D+E             G      A       + +
Sbjct: 232 GWTPLHAAAHWGKEEACRILV-ENLCDMEAV--------NKVGQTAFDVADEDILGYLEE 282

Query: 94  FLVEHGAKVNSKTRTNS 110
              +     + K    S
Sbjct: 283 LQKKQNLLHSEKREKKS 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  171 bits (436), Expect = 5e-52
 Identities = 49/232 (21%), Positives = 78/232 (33%), Gaps = 36/232 (15%)

Query: 27  VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
           V   ++     L  A     ++++  L      +   +            + PL  AA  
Sbjct: 18  VLTGEYKKDELLEAARSGNEEKLMALLTP-LNVNCHAS--------DGRKSTPLHLAAGY 68

Query: 87  GHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
             + IVQ L++HGA V++K +    PL  AC  GH+ V + L++HGA     +    T L
Sbjct: 69  NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL 128

Query: 147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV--- 203
             A  K    +   LLS  AD    +  G +A+         E L       + +     
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188

Query: 204 -------------------DSYGMTPLLAAAVVGHQH---IVEYLI--GLNI 231
                                   T L  A    H     + E L+  G N+
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  170 bits (433), Expect = 1e-51
 Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 34/219 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G  PL  AC  GH E+ E L+K   A V        +   +    PL  AA+   + +  
Sbjct: 91  GLVPLHNACSYGHYEVTELLLK-HGACV--------NAMDLWQFTPLHEAASKNRVEVCS 141

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK---------------------YLVEHG 132
            L+ HGA          + +  A        +                        +   
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201

Query: 133 ADFEVSNRHGHTCLMIACYKGHYR---IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
                  +   T L  A    H +   + + LL   A++N K+    T LH  AE    +
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261

Query: 190 ILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           ++++L  HGA+M+ +DS G T L  AA+ GH      L+
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  164 bits (417), Expect = 3e-49
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 78  PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
             L  A +     ++  L       ++     STPL  A       +V+ L++HGAD   
Sbjct: 27  ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
            ++ G   L  AC  GHY + + LL   A +N       T LH+ A    +E+  LLLSH
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 198 GARMDV---DSYGMTPLLAAAVVGHQHIVEYLIG----LNIVSRKEKIDALELL 244
           GA  D    + +G + +  A     +  + Y       L      +     + L
Sbjct: 147 GA--DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  158 bits (401), Expect = 7e-47
 Identities = 46/204 (22%), Positives = 75/204 (36%), Gaps = 32/204 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G + + MA     +E + Y  K                    G   L  AA    L  V+
Sbjct: 157 GKSAVDMAPTPELRERLTYEFK--------------------GHSLLQ-AAREADLAKVK 195

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFG---VVKYLVEHGADFEVSNRHGHTCLMIAC 150
             +        + +++ T L  A    H     V + L+  GA+    N+   T L +A 
Sbjct: 196 KTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA 255

Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMT 209
            + H  +++ L    A MN   S G TALH  A AG ++  +LLLS+G+   +    G T
Sbjct: 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFT 315

Query: 210 PLLAAAVVGHQHIVEYLI--GLNI 231
                        V+ ++     +
Sbjct: 316 AAQMGN-----EAVQQILSESTPM 334

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  141 bits (357), Expect = 2e-40
 Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 2/139 (1%)

Query: 91  IVQFLVEHGAKVNSKTRTNSTPL-RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
               L +  AK           L  AA       ++  L     +   S+    T L +A
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

Query: 150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGM 208
                 RIV+ LL   AD++ K   G   LH+    G  E+ +LLL HGA ++  D +  
Sbjct: 66  AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125

Query: 209 TPLLAAAVVGHQHIVEYLI 227
           TPL  AA      +   L+
Sbjct: 126 TPLHEAASKNRVEVCSLLL 144

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 153 GHY-RIVKYLLSLNADMNRKSSKGNTALHDCAEAG-SIEILKLLLSHGARMDV---DSYG 207
           G + +    L   +A            L + A +G   +++ LL       +    D   
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV--NCHASDGRK 58

Query: 208 MTPLLAAAVVGHQHIVEYLI 227
            TPL  AA      IV+ L+
Sbjct: 59  STPLHLAAGYNRVRIVQLLL 78

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  164 bits (419), Expect = 8e-52
 Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L+ A + G  E V+ L      +  +         T     PL  AA    + +V+
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG---RQST-----PLHFAAGYNRVSVVE 59

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
           +L++HGA V++K +    PL  AC  GH+ V + LV+HGA   V++    T L  A  KG
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
            Y I K LL   AD  +K+  GNT L    + G  +I  LL    A
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  149 bits (378), Expect = 1e-45
 Identities = 51/151 (33%), Positives = 65/151 (43%), Gaps = 3/151 (1%)

Query: 79  PLWCAAAAGHLPIVQFLVE-HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
            L  AA AG +  V+ L               STPL  A       VV+YL++HGAD   
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
            ++ G   L  AC  GHY + + L+   A +N       T LH+ A  G  EI KLLL H
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130

Query: 198 GARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           GA     +  G TPL      G   I + L 
Sbjct: 131 GADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  120 bits (305), Expect = 1e-34
 Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVE-HGADFEVSNRHGHTCLMIACYKGHYRI 157
           GA  NS+       L  A   G    VK L      +         T L  A       +
Sbjct: 1   GAMGNSEADR---QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV 216
           V+YLL   AD++ K   G   LH+    G  E+ +LL+ HGA ++V D +  TPL  AA 
Sbjct: 58  VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117

Query: 217 VGHQHIVEYLI 227
            G   I + L+
Sbjct: 118 KGKYEICKLLL 128

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 90.5 bits (226), Expect = 6e-23
 Identities = 35/101 (34%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           GG  PL  AC  GH E+ E LVK   A V            +    PL  AAA G   I 
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKH-GAVVNVA--------DLWKFTPLHEAAAKGKYEIC 124

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
           + L++HGA    K R  +TPL     DG   +   L    A
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 60.5 bits (148), Expect = 9e-12
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR--MDVDSYGMTPLLAAAVVGHQHIV 223
           A  N   S+ +  L + A+AG +E +K L +  +    D++    TPL  AA      +V
Sbjct: 2   AMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 58

Query: 224 EYLI--GLNI 231
           EYL+  G ++
Sbjct: 59  EYLLQHGADV 68

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  166 bits (423), Expect = 1e-51
 Identities = 52/212 (24%), Positives = 72/212 (33%), Gaps = 15/212 (7%)

Query: 23  EIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC 82
             +   + +      L+ A   G  E+V+  VKE   D  +           EG   L  
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQ--------PNEEGITALHN 60

Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD-FEVSNRH 141
           A    +  IV FL+  GA VNS      TPL  A       +   LV+HGA  F  +   
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 142 GHTCLMIA--CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           G T         +G+     YL  +   M   +S    AL D   A   + L        
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWD-YSAEFGDELSFREGESV 179

Query: 200 RMDV-DSYGMTPLLAAAVVGHQHIVE-YLIGL 229
            +   D    T    AA+ G +  V     GL
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  152 bits (387), Expect = 3e-46
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 11/186 (5%)

Query: 50  VEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTN 109
           +  ++        +          +     L  AA  G L +VQ  V+     +      
Sbjct: 1   MRSVL-RKAGSPRKA-----RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG 54

Query: 110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN 169
            T L  A    ++ +V +L+  GA+    + HG T L  A       I   L+   A + 
Sbjct: 55  ITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114

Query: 170 RKSSK-GNTALHDCAEA--GSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY 225
             +   G TA   C     G  +    L      M + +S  +  L   +       + +
Sbjct: 115 ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSF 173

Query: 226 LIGLNI 231
             G ++
Sbjct: 174 REGESV 179

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  166 bits (423), Expect = 2e-51
 Identities = 47/219 (21%), Positives = 77/219 (35%), Gaps = 23/219 (10%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           GA   ++  ++GH            ADV          ET     P W AA       + 
Sbjct: 15  GAMEYLIEWKDGHSPSWVPSS-YIAADVVSEY------ET-----PWWTAARKADEQALS 62

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIACYK 152
            L+     V++      T L      G    V+ L E GAD +  + R G T L +A   
Sbjct: 63  QLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLL 212
               +V+ L+ L AD+  +  +G TAL    E          +  G R+ ++   +  +L
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK--VINVL 179

Query: 213 AAAVVGHQHIVEYLIG-------LNIVSRKEKIDALELL 244
              V  +  + E +           +V  K+  D   + 
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  145 bits (369), Expect = 3e-43
 Identities = 42/209 (20%), Positives = 61/209 (29%), Gaps = 34/209 (16%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TP   A R   ++ +  L++    DV+             G   L   A  G    V+
Sbjct: 45  YETPWWTAARKADEQALSQLLE--DRDVDAVDE--------NGRTALLFVAGLGSDKCVR 94

Query: 94  FLVEHGAKVNSK-TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
            L E GA ++ +  R   T L  A       VV+ LVE GAD EV +  G T L +A   
Sbjct: 95  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154

Query: 153 GHYRIVKYLLSLNADMNRKSS----------------------KGNTALHDCAEAGSIEI 190
                    +     +  +                        KG    +        + 
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

Query: 191 LKLLLSHGARMDVDSYGMTPLLAAAVVGH 219
             +   H A  DV       L  A     
Sbjct: 215 EWVKGVHVAE-DVAKDYEDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  143 bits (363), Expect = 2e-42
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGA         GH P         A V S+     TP   A        +  L+    D
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL-EDRD 69

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
            +  + +G T L+     G  + V+ L    AD++ +  + G TALH  A     E+++ 
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           L+  GA ++V D  G+T L  A  +         +
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPM 164

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  112 bits (283), Expect = 1e-30
 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 13/133 (9%)

Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
           G++   +             DGH           AD         T    A  K   + +
Sbjct: 8   GSRTAGEGAM---EYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL 61

Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS----YGMTPLLAA 214
             LL  + D++     G TAL   A  GS + ++LL   GA  D+D      G+T L  A
Sbjct: 62  SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--DLDHRDMRGGLTALHMA 118

Query: 215 AVVGHQHIVEYLI 227
           A      +VE L+
Sbjct: 119 AGYVRPEVVEALV 131

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 92.3 bits (230), Expect = 7e-23
 Identities = 28/156 (17%), Positives = 43/156 (27%), Gaps = 22/156 (14%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           GG T L MA      E+VE LV E  AD+E         E   G   L  A         
Sbjct: 110 GGLTALHMAAGYVRPEVVEALV-ELGADIEV--------EDERGLTALELAREILKTTPK 160

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
              ++ G ++  +       +       +  V + + + G         G     +  +K
Sbjct: 161 GNPMQFGRRIGLE---KVINVLEGQVFEYAEVDEIVEKRG--------KGKDVEYLVRWK 209

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
                        A+   K       L        I
Sbjct: 210 DGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  160 bits (408), Expect = 3e-50
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
                L  A   G  E +  L+ +   +V              G   L      G+  I 
Sbjct: 4   PWGNELASAAARGDLEQLTSLL-QNNVNVNAQNG--------FGRTALQ-VMKLGNPEIA 53

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           + L+  GA  + K RT    +  A   G    ++ L+E  AD  + +  G+  L +A  +
Sbjct: 54  RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113

Query: 153 GHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           GH R+V++L+   A ++  ++ KG+TA       G  E++ L+ ++GA
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  160 bits (408), Expect = 4e-50
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  AAA G L  +  L+++   VN++     T L+     G+  + + L+  GA+ ++ 
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK 66

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           +R G   +  A   G    ++ LL   AD+N + ++GN  LH  A+ G + +++ L+ H 
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 199 ARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
           A  +V   +  G T    A + G   +V  + 
Sbjct: 127 AS-NVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  124 bits (313), Expect = 7e-36
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
             L +A   G    +  L+++  +    N  G T L +    G+  I + LL   A+ + 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65

Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           K   G   +HD A AG ++ L+ LL   A +++ D+ G  PL  AA  GH  +VE+L+
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 94.4 bits (236), Expect = 2e-24
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM 201
               L  A  +G    +  LL  N ++N ++  G TAL    + G+ EI + LL  GA  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANP 63

Query: 202 DV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           D+ D  G   +  AA  G    ++ L+
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLL 90

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  160 bits (407), Expect = 4e-50
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 10/164 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L  A   G  + V  L+       +             G   L      G   I  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR--------FGKTALQ-VMMFGSTAIAL 52

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L++ GA  N +  + ++P+  A   G    +K LVEHGAD  V +  G   + +A  +G
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           H  +V +L +  +D++R+ ++G T L    + G+ +++ +L  H
Sbjct: 113 HTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  148 bits (377), Expect = 1e-45
 Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 79  PLWCAAAAGHLPIVQFLVE-HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
            L  AAA G +  V+ L+       ++  R   T L+   F G   +   L++ GA   V
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
            +  G + +  A   G    +K L+   AD+N     G   +H   + G   ++  L + 
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 198 GARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
               D+   D+ G+TPL  A   G Q +V+ L 
Sbjct: 124 S---DLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  120 bits (303), Expect = 2e-34
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 109 NSTPLRAACFDGHFGVVKYLVE-HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
               L  A   G    V+ L+       +  NR G T L +  + G   I   LL   A 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
            N + + G + +HD A  G ++ LK+L+ HGA ++V D  G  P+  A   GH  +V +L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 227 I 227
            
Sbjct: 121 A 121

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 1e-09
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 174 KGNTALHDCAEAGSIEILK-LLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           +    L   A  G ++ ++ LL       D ++ +G T L      G   I   L+
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL 55

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  158 bits (401), Expect = 8e-49
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 30/196 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           GA   ++  ++GH            ADV          ET     P W AA       + 
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSS-YIAADVVSEY------ET-----PWWTAARKADEQALS 61

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIACYK 152
            L+     V++      T L      G    V+ L E GAD +  + R G T L +A   
Sbjct: 62  QLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLL 212
               +V+ L+ L AD+  +  +G TAL    E          +  G R            
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR------------ 168

Query: 213 AAAVVGHQHIVEYLIG 228
               +G + ++  L G
Sbjct: 169 ----IGLEKVINVLEG 180

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  146 bits (370), Expect = 4e-44
 Identities = 38/155 (24%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
           EGA         GH P         A V S+     TP   A        +  L+    D
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL-EDRD 68

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKL 193
            +  + +G T L+     G  + V+ L    AD++ +  + G TALH  A     E+++ 
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           L+  GA ++V D  G+T L  A  +         +
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  118 bits (299), Expect = 2e-33
 Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 13/133 (9%)

Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
           G++   +             DGH           AD         T    A  K   + +
Sbjct: 7   GSRTAGEGAM---EYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL 60

Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDS----YGMTPLLAA 214
             LL  + D++     G TAL   A  GS + ++LL   GA  D+D      G+T L  A
Sbjct: 61  SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA--DLDHRDMRGGLTALHMA 117

Query: 215 AVVGHQHIVEYLI 227
           A      +VE L+
Sbjct: 118 AGYVRPEVVEALV 130

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.1 bits (157), Expect = 6e-13
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
           GG T L MA      E+VE LV E  AD+E         E   G   L  A         
Sbjct: 109 GGLTALHMAAGYVRPEVVEALV-ELGADIEV--------EDERGLTALELAREILKTTPK 159

Query: 93  QFLVEHGAKVNSK 105
              ++ G ++  +
Sbjct: 160 GNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.4 bits (150), Expect = 6e-12
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI- 227
           +R + +G        + G            A  DV S   TP   AA    +  +  L+ 
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQALSQLLE 65

Query: 228 GLNI 231
             ++
Sbjct: 66  DRDV 69

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  152 bits (387), Expect = 4e-47
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  AAA G +  V+ L+E GA  N+       P++     G   V + L+ HGA+   +
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73

Query: 139 NRHGHTC-LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +    T  +  A  +G    +  L    A ++ + + G   +    E G  ++ + L + 
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

Query: 198 GARMDVDSYGMTPLLAAAVVGHQHIVE 224
                    G       A  G   I +
Sbjct: 134 AG--GTR--GSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  143 bits (363), Expect = 2e-43
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 16/158 (10%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
            A  L  A   G  E V  L+ E  A+               G  P+      G   + +
Sbjct: 12  SADWLATAAARGRVEEVRALL-EAGANPNAP--------NSYGRRPIQVMMM-GSARVAE 61

Query: 94  FLVEHGAKVNSKTRTNST-PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
            L+ HGA+ N       T P+  A  +G    +  L   GA  +V +  G   + +A   
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI 190
           GH  + +YL +           G+      A  G  +I
Sbjct: 122 GHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  136 bits (344), Expect = 1e-40
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           +E  A   S    ++  L  A   G    V+ L+E GA+    N +G   + +    G  
Sbjct: 1   MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 156 RIVKYLLSLNADMNRKSSKGNT-ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLA 213
           R+ + LL   A+ N       T  +HD A  G ++ L +L   GAR+DV D++G  P+  
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 214 AAVVGHQHIVEYLI 227
           A  +GH+ +  YL 
Sbjct: 118 AEELGHRDVARYLR 131

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 79.8 bits (198), Expect = 6e-19
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 14/95 (14%)

Query: 31  KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
                 P+  A R G  + +  L +   A ++             G  P+  A   GH  
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRA-GARLDVR--------DAWGRLPVDLAEELGHRD 125

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV 125
           + ++L                  R    +G   + 
Sbjct: 126 VARYLRAAAGGTRGS-----NHARIDAAEGPSDIP 155

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  149 bits (380), Expect = 2e-46
 Identities = 57/124 (45%), Positives = 73/124 (58%)

Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
           G  PL  AA  GHL +V+ L+E GA VN+K +   TPL  A  +GH  VVK L+E GAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
              +++G T L +A   GH  +VK LL   AD+N K   G T LH  A  G +E++KLLL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 196 SHGA 199
             GA
Sbjct: 122 EAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  143 bits (363), Expect = 8e-44
 Identities = 57/133 (42%), Positives = 73/133 (54%), Gaps = 9/133 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A RNGH E+V+ L+ E  ADV              G  PL  AA  GHL +V+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL-EAGADVNAK--------DKNGRTPLHLAARNGHLEVVK 52

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+E GA VN+K +   TPL  A  +GH  VVK L+E GAD    +++G T L +A   G
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112

Query: 154 HYRIVKYLLSLNA 166
           H  +VK LL   A
Sbjct: 113 HLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  133 bits (337), Expect = 5e-40
 Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 1/118 (0%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
           TPL  A  +GH  VVK L+E GAD    +++G T L +A   GH  +VK LL   AD+N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           K   G T LH  A  G +E++KLLL  GA ++  D  G TPL  AA  GH  +V+ L+
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  100 bits (251), Expect = 4e-27
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR 200
           +G T L +A   GH  +VK LL   AD+N K   G T LH  A  G +E++KLLL  GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 201 MDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++  D  G TPL  AA  GH  +V+ L+
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  150 bits (383), Expect = 2e-46
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 10/161 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L+ A R G  + V  L+    A                G  PL  AA  GH    +
Sbjct: 2   LGKKLLEAARAGQDDEVRILM-ANGAPFTTDW---------LGTSPLHLAAQYGHFSTTE 51

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  G   +++T+ + TPL  A  +GH  +V+ L++HGAD    +    T L  A    
Sbjct: 52  VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
           H  +V+ L+   AD++ +S    TA     + G+ ++ ++L
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  149 bits (379), Expect = 6e-46
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  AA AG    V+ L+ +GA         ++PL  A   GHF   + L+  G   +  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
            +   T L +A  +GH  IV+ LL   AD+N K     TALH   E    E+++LL+ +G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
           A +     +  T    +   G++ + E L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  119 bits (301), Expect = 3e-34
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
             L  A   G    V+ L+ +GA F   +  G + L +A   GH+   + LL      + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++    T LH  A  G   I+++LL HGA ++  D   MT L  A    HQ +VE LI
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 68.2 bits (168), Expect = 1e-14
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
               L + A AG  + +++L+++GA    D  G +PL  AA  GH    E L+  G++ 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  150 bits (379), Expect = 5e-45
 Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 12/195 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             T L  AC  GH EIVE+L+ +    V +            G  PL  AA+AG   IV+
Sbjct: 40  SRTALHWACSAGHTEIVEFLL-QLGVPVNDK--------DDAGWSPLHIAASAGXDEIVK 90

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  GA VN+  +   TPL  A       +   L+E GA+ +  + +  T +  A  KG
Sbjct: 91  ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG 150

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           + ++V  LL   A  N + ++GNT LH   +   +E  K L++ GA + + +    TPL 
Sbjct: 151 NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210

Query: 213 AAAVVGHQHIVEYLI 227
            A   G   ++   +
Sbjct: 211 VAK--GGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  147 bits (373), Expect = 3e-44
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 10/196 (5%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
                  +A      E+ E ++   K+    T          +    L  A +AGH  IV
Sbjct: 6   SNIMICNLAYSGKLDELKERIL-ADKSLATRT--------DQDSRTALHWACSAGHTEIV 56

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
           +FL++ G  VN K     +PL  A   G   +VK L+  GA     N++G T L  A  K
Sbjct: 57  EFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116

Query: 153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPL 211
             + I   LL   A+ + K     TA+H  A  G+++++ +LL + A  ++ D+ G TPL
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL 176

Query: 212 LAAAVVGHQHIVEYLI 227
             A         ++L+
Sbjct: 177 HLACDEERVEEAKFLV 192

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  123 bits (309), Expect = 1e-34
 Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 11/170 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G +PL +A   G  EIV+ L+ +  A V              G  PL  AA+     I  
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVK-GAHVNA--------VNQNGCTPLHYAASKNRHEIAV 123

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+E GA  ++K   ++T +  A   G+  +V  L+ + A   + +  G+T L +AC + 
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV 203
                K+L++  A +  ++ +  T L      G + ++   L+ G    +
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 59.1 bits (143), Expect = 9e-11
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
                    +        E+ + +L+  +       D    T L  A   GH  IVE+L+
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 228 --GLNI 231
             G+ +
Sbjct: 61  QLGVPV 66

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  149 bits (378), Expect = 9e-45
 Identities = 50/229 (21%), Positives = 86/229 (37%), Gaps = 39/229 (17%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             +PL++A +    + +  L+K    +V + GA         G   L  AA   +L    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA--------MGETALHIAALYDNLEAAM 54

Query: 94  FLVEHGAKV-----NSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD-------------F 135
            L+E   ++      S+     T L  A  + +  +V+ L+  GA               
Sbjct: 55  VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP 114

Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI----L 191
                +G   L  A   G   IV+ L+   AD+  + S GNT LH      +        
Sbjct: 115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 192 KLLLSHGA-------RMDVDSYGMTPLLAAAVVGHQHIVEYLI--GLNI 231
            LLLS+          +  ++ G+TP   A V G+  + ++L+    +I
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (361), Expect = 2e-43
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 70  DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
                     L  AAA G +  V+ L+E GA  N+  R    P++     G   V + L+
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 130 EHGADFEVSNRHGHTC-LMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
            HGA+   ++    T  +  A  +G    +  L    A ++   + G   +    E G  
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR 124

Query: 189 EILKLLLSHGA 199
           +I + L +   
Sbjct: 125 DIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  139 bits (353), Expect = 3e-42
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
              ++    ++   L  A   G    V+ L+E GAD    NR G   + +    G  ++ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 159 KYLLSLNADMNRKSSKGNT-ALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV 216
           + LL   A+ N       T  +HD A  G ++ L +L   GAR+DV D++G  P+  A  
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 217 VGHQHIVEYLI 227
            GH+ I  YL 
Sbjct: 121 QGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  138 bits (350), Expect = 1e-41
 Identities = 33/135 (24%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L  A   G  E V  L+ E  AD               G  P+      G   + +
Sbjct: 12  SDAGLATAAARGQVETVRQLL-EAGADPNAL--------NRFGRRPIQVMMM-GSAQVAE 61

Query: 94  FLVEHGAKVNSKTRTNST-PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK 152
            L+ HGA+ N       T P+  A  +G    +  L   GA  +V +  G   + +A  +
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

Query: 153 GHYRIVKYLLSLNAD 167
           GH  I +YL +   D
Sbjct: 122 GHRDIARYLHAATGD 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  142 bits (360), Expect = 2e-43
 Identities = 36/121 (29%), Positives = 55/121 (45%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  A+  G +P V++L+++G+  N K     TPL  AC  GH  VV+ L++H A    +
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
                + L  A   GH  IVK LLS  A  N  +  G   +    +     +L L   + 
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 199 A 199
           +
Sbjct: 133 S 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  136 bits (344), Expect = 6e-41
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
           G           T L  A   G    V+YL+++G+D  V +  G T L  AC  GH ++V
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVV 217
           + LL   A +N    + ++ LHD A+ G ++I+KLLLS+GA  +  + +G+ P+      
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

Query: 218 GHQHIVEYLI 227
             + ++    
Sbjct: 120 SMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  100 bits (253), Expect = 3e-27
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL  AC +GH ++VE L++  KA V  TG         +   PL  AA  GH+ IV+
Sbjct: 43  GWTPLHEACNHGHLKVVELLLQH-KALVNTTGY--------QNDSPLHDAAKNGHVDIVK 93

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
            L+ +GA  N+       P+     +    ++    ++ + 
Sbjct: 94  LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 61.3 bits (150), Expect = 3e-12
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             +PL  A +NGH +IV+ L+    A              + G  P+          ++ 
Sbjct: 76  NDSPLHDAAKNGHVDIVKLLL-SYGASRNA--------VNIFGLRPVDYTDDESMKSLLL 126

Query: 94  FLVEHGAKVNS 104
              ++ +   S
Sbjct: 127 LPEKNESSSAS 137

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  135 bits (342), Expect = 1e-40
 Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
                + A +NG  + V+  V     DV  T           G  PL  AA  G L I++
Sbjct: 7   CDKEFMWALKNGDLDEVKDYV-AKGEDVNRT--------LEGGRKPLHYAADCGQLEILE 57

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
           FL+  GA +N+  + + TPL +A ++GH   VK L+  GAD  V    G T       + 
Sbjct: 58  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117

Query: 154 HYRIVK 159
              +++
Sbjct: 118 IKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  130 bits (330), Expect = 7e-39
 Identities = 35/114 (30%), Positives = 47/114 (41%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
               A   G L  V+  V  G  VN        PL  A   G   ++++L+  GAD    
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           ++H  T L+ A Y+GH   VK LLS  AD   K   G TA           +L+
Sbjct: 70  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  127 bits (323), Expect = 8e-38
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMN 169
                 A  +G    VK  V  G D   +   G   L  A   G   I+++LL   AD+N
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVE 224
                  T L      G +  +KLLLS GA   V    G+T   A      + +++
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  102 bits (257), Expect = 6e-28
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
                   M A   G    VK  ++   D+NR    G   LH  A+ G +EIL+ LL  G
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 199 ARMDV---DSYGMTPLLAAAVVGHQHIVEYLI 227
           A  D+   D + +TPLL+A   GH   V+ L+
Sbjct: 64  A--DINAPDKHHITPLLSAVYEGHVSCVKLLL 93

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 170 RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYL 226
              S  +       + G ++ +K  ++ G   DV      G  PL  AA  G   I+E+L
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGE--DVNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 227 I 227
           +
Sbjct: 60  L 60

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  134 bits (338), Expect = 2e-39
 Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 17/166 (10%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKV---NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
            +  AA  G       L E G +      K+      LR    +  + +  +L+  GAD 
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68

Query: 136 EVSNRHGHTCLMIACYKGH------YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
           +   + G T        G         + K  L   AD+          +        ++
Sbjct: 69  KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD 128

Query: 190 ILK-------LLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
             +       +    G ++ + D +G+T L           ++ + 
Sbjct: 129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  132 bits (334), Expect = 8e-39
 Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 19/181 (10%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
             +  A   G  E    L ++   + +E        ++      L          I  FL
Sbjct: 8   RTVSAAAMLGTYEDFLELFEK-GYEDKE-----SVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGV------VKYLVEHGADFEVSNRHGHTCLMIA 149
           +  GA + S+T+  +T        G   +       K  +E GAD     +     +   
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

Query: 150 CYKGHYRIVK-------YLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD 202
            +       +               +  K   G TAL           LK++  +  + +
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

Query: 203 V 203
           +
Sbjct: 182 L 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  109 bits (275), Expect = 5e-30
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 10/146 (6%)

Query: 104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH---GHTCLMIACYKGHYRIVKY 160
           S   +    + AA   G +     L E G + + S       +  L     +  Y+I  +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 161 LLSLNADMNRKSSKGNTALHDCAEAG------SIEILKLLLSHGARMD-VDSYGMTPLLA 213
           L++  AD+  ++ +G T      + G      + E+ K+ L  GA +  +       +  
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 214 AAVVGHQHIVEYLIGLNIVSRKEKID 239
                     E +    ++  +  + 
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQ 146

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  107 bits (270), Expect = 3e-29
 Identities = 20/149 (13%), Positives = 41/149 (27%), Gaps = 22/149 (14%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH------L 89
             L         +I  +L+    AD++          T EG    +     G        
Sbjct: 44  DVLRNNNDEARYKISMFLI-NKGADIKSR--------TKEGTTLFFPLFQGGGNDITGTT 94

Query: 90  PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK-------YLVEHGADFEVSNRHG 142
            + +  +E GA + +  +     +    F+      +          + G    + ++ G
Sbjct: 95  ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG 154

Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRK 171
            T L           +K +       N K
Sbjct: 155 LTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 22/119 (18%)

Query: 34  GATPLIMACRNGHK------EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG 87
           G T      + G        E+ +  + E  AD+                  ++      
Sbjct: 75  GTTLFFPLFQGGGNDITGTTELCKIFL-EKGADITALYK--------PYKIVVFKNIFNY 125

Query: 88  HL------PIVQF-LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN 139
            +      P+ +    + G ++  K +   T L           +K + ++   + +  
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  129 bits (328), Expect = 2e-38
 Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
               HG+ +          L  A   G    V+ L+ +GAD    + +G T L +A   G
Sbjct: 6   HHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTP 210
           H  IV+ LL   AD+N   + G T LH  A  G +EI ++LL HGA  DV   D +G T 
Sbjct: 59  HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA--DVNAQDKFGKTA 116

Query: 211 LLAAAVVGHQHIVEYLIGLN 230
              +   G++ + E L  LN
Sbjct: 117 FDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  129 bits (328), Expect = 2e-38
 Identities = 40/119 (33%), Positives = 60/119 (50%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  AA AG    V+ L+ +GA VN+K     TPL  A   GH  +V+ L+++GAD    
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           +  G T L +A + GH  I + LL   AD+N +   G TA       G+ ++ ++L   
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  121 bits (307), Expect = 2e-35
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 9/132 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L+ A R G  + V  L+    ADV              G  PL+ A A GHL IV+
Sbjct: 14  LGKKLLEAARAGQDDEVRILM-ANGADVNAK--------DEYGLTPLYLATAHGHLEIVE 64

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+++GA VN+      TPL  A F GH  + + L++HGAD    ++ G T   I+   G
Sbjct: 65  VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124

Query: 154 HYRIVKYLLSLN 165
           +  + + L  LN
Sbjct: 125 NEDLAEILQKLN 136

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  131 bits (330), Expect = 3e-37
 Identities = 43/227 (18%), Positives = 70/227 (30%), Gaps = 46/227 (20%)

Query: 34  GATPLIMA---CRNGHKEIVEYLVKECKADVEETGA---VMFDHETVEGAPPLWCAAAAG 87
           G T L+ A     NG  + +  L+ +     +         +     +G   L  A    
Sbjct: 54  GKTCLLKAMLNLHNGQNDTIALLL-DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112

Query: 88  HLPIVQFLVEHGAKVNSKTRTN--------------STPLRAACFDGHFGVVKYLVEHG- 132
           ++ +V  LVE+GA V +    +                PL  A       +VK+L+++  
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172

Query: 133 --ADFEVSNRHGHTCLMIACYKGHYRI----------------VKYLLSLNADMNRKSSK 174
             AD    +  G+T L          +                   L          + K
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232

Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQH 221
           G T L   A +G I +L  +L          +      AAA   H H
Sbjct: 233 GLTPLALAASSGKIGVLAYILQREI------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  125 bits (315), Expect = 5e-35
 Identities = 49/240 (20%), Positives = 80/240 (33%), Gaps = 49/240 (20%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA---GHLPIV 92
             +  A    + + +E L+   +   +      F  +   G   L  A      G    +
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK-DPETGKTCLLKAMLNLHNGQNDTI 73

Query: 93  QFLVEHGAKVNSKTRTN-----------STPLRAACFDGHFGVVKYLVEHGAD------- 134
             L++   K +S  +              T L  A    +  +V  LVE+GAD       
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 135 -------FEVSNRHGHTCLMIACYKGHYRIVKYLLS---LNADMNRKSSKGNTALHDCAE 184
                         G   L +A       IVK+LL      AD++ + S GNT LH   E
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193

Query: 185 AG---------SIEILKLLLSHGARMD--------VDSYGMTPLLAAAVVGHQHIVEYLI 227
                         +   +L  GA++          +  G+TPL  AA  G   ++ Y++
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  107 bits (270), Expect = 2e-28
 Identities = 37/193 (19%), Positives = 61/193 (31%), Gaps = 33/193 (17%)

Query: 82  CAAAAGHLPIVQFLVEHGAKVNSK-TRTNSTPLRAACF---DGHFGVVKYLVEHGADFEV 137
           C      LP +Q   +       K   T  T L  A     +G    +  L++     + 
Sbjct: 26  CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85

Query: 138 -----------SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK------------ 174
                      S   G T L IA  + +  +V  L+   AD+   ++             
Sbjct: 86  LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145

Query: 175 --GNTALHDCAEAGSIEILKLLLSHGARM-DV---DSYGMTPLLAAAVVGHQHIVEYLIG 228
             G   L   A    + I+K LL +  +  D+   DS G T L A   V    +      
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205

Query: 229 LNIVSRKEKIDAL 241
            ++ +    + A 
Sbjct: 206 TSMYNEILILGAK 218

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 94.1 bits (234), Expect = 3e-23
 Identities = 34/167 (20%), Positives = 55/167 (32%), Gaps = 37/167 (22%)

Query: 98  HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVE-------HGADFEVSNR-HGHTCLMIA 149
             A        +   +  A    +   ++ L+           D E  +   G TCL+ A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 150 ---CYKGHYRIVKYLLS-----------LNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
               + G    +  LL            +NA       KG TALH   E  ++ ++ LL+
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121

Query: 196 SHGA---------------RMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
            +GA                     +G  PL  AA      IV++L+
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  122 bits (310), Expect = 5e-36
 Identities = 38/102 (37%), Positives = 57/102 (55%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
           PL  AA  GH   V+ L+  GA VN++++  +TPL  A  +GH  +VK L+  GAD    
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
           ++ G+T   +A   GH+ IVK L +  AD+N +S   +   H
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  119 bits (302), Expect = 9e-35
 Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 10/124 (8%)

Query: 99  GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
           G    SK    +TPL  A  +GH   VK L+  GAD    ++ G+T L +A   GH  IV
Sbjct: 1   GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVV 217
           K LL+  AD+N +S  GNT  H   + G  EI+KLL + GA ++                
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH------ 112

Query: 218 GHQH 221
            H H
Sbjct: 113 -HHH 115

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  103 bits (260), Expect = 2e-28
 Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 132 GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
           G      ++ G+T L  A   GH   VK LLS  AD+N +S  GNT LH  A+ G  EI+
Sbjct: 1   GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 192 KLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           KLLL+ GA ++     G TP   A   GH  IV+ L 
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 80.9 bits (201), Expect = 8e-20
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 9/80 (11%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A +NGH EIV+ L+ +  ADV           + +G  P   A   GH  IV+
Sbjct: 42  GNTPLHLAAKNGHAEIVKLLLAK-GADVNAR--------SKDGNTPEHLAKKNGHHEIVK 92

Query: 94  FLVEHGAKVNSKTRTNSTPL 113
            L   GA VN+++  +S   
Sbjct: 93  LLDAKGADVNARSWGSSHHH 112

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  127 bits (320), Expect = 5e-36
 Identities = 46/203 (22%), Positives = 71/203 (34%), Gaps = 37/203 (18%)

Query: 34  GATPLIMA---CRNGHKEIVEYLVKECKADVEETGAVM--FDHETVEGAPPLWCAAAAGH 88
           G T L+ A    ++G    +  L++  K        V      E  +G   L  A     
Sbjct: 43  GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102

Query: 89  LPIVQFLVEHGAKVNSKTRTN-------------STPLRAACFDGHFGVVKYLVEHG--- 132
           L  V+ LVE+GA V+ +                   PL  A     + VV YL+E+    
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162

Query: 133 ADFEVSNRHGHTCL----------------MIACYKGHYRIVKYLLSLNADMNRKSSKGN 176
           A  E ++  G+T L                +I  Y G  ++   L          + +G 
Sbjct: 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222

Query: 177 TALHDCAEAGSIEILKLLLSHGA 199
           T L   A+ G IEI + +L    
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  118 bits (298), Expect = 1e-32
 Identities = 36/171 (21%), Positives = 56/171 (32%), Gaps = 32/171 (18%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMF-----DHETVEGAPPLWCAAAAGH 88
           G + L +A      + V+ LV E  ADV       F           G  PL  AA    
Sbjct: 90  GHSALHIAIEKRSLQCVKLLV-ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

Query: 89  LPIVQFLVEHG-------------------AKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
             +V +L+E+                      + +     ++ L    +DG   +   L 
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208

Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
                 E+SN  G T L +A  +G   I +++L            G  A H
Sbjct: 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF-------SGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 92.2 bits (229), Expect = 1e-22
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 39/181 (21%)

Query: 78  PPLWCAAAAGHLPIVQFLVEH--------GAKVNSKTRTNSTPLRAA---CFDGHFGVVK 126
             L+   + G    +  L+E+             ++  T  T L  A     DG    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 127 YLVEHG-----------ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK- 174
            L++             A        GH+ L IA  K   + VK L+   AD++ ++   
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 175 ------------GNTALHDCAEAGSIEILKLLLSHGARM-DV---DSYGMTPLLAAAVVG 218
                       G   L   A     +++  LL +  +   +   DS G T L A  ++ 
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 219 H 219
            
Sbjct: 184 D 184

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  128 bits (324), Expect = 2e-35
 Identities = 35/219 (15%), Positives = 58/219 (26%), Gaps = 32/219 (14%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
                 +A  NGH  ++  L  E                  E       AA  GHL ++ 
Sbjct: 128 NYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMI------QAENYHAFRLAAENGHLHVLN 180

Query: 94  FLVEHGAKVNSKTRT---NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
            L E      +             AA   GH  V+ +L++       +  H         
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240

Query: 151 YKGHYRIVKYLLSLNADMNRKSS-------------KGNTALHDCAEAGS---IEILKLL 194
                R V  L  ++      +              +G   L +         ++ ++ L
Sbjct: 241 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 300

Query: 195 LS-----HGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           LS       A            L  A  +G+Q     L+
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  114 bits (287), Expect = 3e-30
 Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 22/207 (10%)

Query: 43  RNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKV 102
              +KE +   +   K ++E+   ++             C   A +    + L     K 
Sbjct: 43  TLSYKEAIHIFLPGTK-NMEQVRQLL-------------CLYYAHYNRNAKQLWSDAHKK 88

Query: 103 NSKTRT-NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
             K+           C       +  L+      +V     +    +A   GH  ++  L
Sbjct: 89  GIKSEVICFVAAITGCSSAL-DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 147

Query: 162 LSLNADMNR--KSSKGNTALHDCAEAGSIEILKLLLSHGA---RMDVDSYGMTPLL-AAA 215
             L          ++   A    AE G + +L  L           + +        AA 
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207

Query: 216 VVGHQHIVEYLIGLNIVSRKEKIDALE 242
             GH +++ +L+   ++    +I   E
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAEIHEFE 234

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  113 bits (284), Expect = 9e-30
 Identities = 29/222 (13%), Positives = 53/222 (23%), Gaps = 43/222 (19%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
                 +A  NGH  ++  L  E               +        W A   GH  ++ 
Sbjct: 163 NYHAFRLAAENGHLHVLNRLC-ELAPTEATA-----MIQAENYYAFRWAAVGRGHHNVIN 216

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-------------- 139
           FL++    +                 G   V  ++  H    +  +              
Sbjct: 217 FLLDCPVMLAYA-------EIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 269

Query: 140 ------RHGHTCLMIACYKGHYRI---VKYLLSLN-----ADMNRKSSKGNTALHDCAEA 185
                   G   L     +    +   +++LLS+      A         N  L      
Sbjct: 270 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329

Query: 186 GSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           G+     LLLS  +   +              G   +    +
Sbjct: 330 GNQGACALLLSIPS--VLALTKANNYYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.3 bits (216), Expect = 4e-20
 Identities = 23/200 (11%), Positives = 51/200 (25%), Gaps = 55/200 (27%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIV 92
                   A   GH  ++ +L+ +C   +                         G   + 
Sbjct: 198 NYYAFRWAAVGRGHHNVINFLL-DCPVMLAYA---------------EIHEFEYGEKYVN 241

Query: 93  QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV--------------------------- 125
            F+  H  ++           + +  DG F +V                           
Sbjct: 242 PFIARHVNRLKE----MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI 297

Query: 126 KYL-----VEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
           ++L     ++  A         +  L +A   G+      LLS+ + +           +
Sbjct: 298 RFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK---ANNYY 354

Query: 181 DCAEAGSIEILKLLLSHGAR 200
                G +++  + L H   
Sbjct: 355 INETGGRLDLRAVALEHHHH 374

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  119 bits (301), Expect = 4e-33
 Identities = 48/235 (20%), Positives = 78/235 (33%), Gaps = 53/235 (22%)

Query: 41  ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA---AAGHLPIVQFLVE 97
              +G + ++ +L+   K  + +            G   L  A    +AG    +  L++
Sbjct: 16  GSPDGLEGLLSFLLTH-KKRLTDEEFREPST----GKTCLPKALLNLSAGRNDTIPILLD 70

Query: 98  HGAK-----------VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD------------ 134
              K                    T L  A        V+ LVE GAD            
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 135 --FEVSNRHGHTCLMIACYKGHYRIVKYLLS---LNADMNRKSSKGNTALHDCAEAGS-- 187
                    G   L +A       IV YL       AD+ R+ S+GNT LH         
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 188 -------IEILKLLLSHGARMD--------VDSYGMTPLLAAAVVGHQHIVEYLI 227
                   ++  LLL   A++         +++ G++PL+ AA  G   I +++I
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 97.2 bits (242), Expect = 2e-24
 Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 40/183 (21%)

Query: 79  PLWCAAA----AGHLPIVQFLVEHGAKVNSKTRTNS----TPLRAACF---DGHFGVVKY 127
            L+   +     G   ++ FL+ H  ++  +         T L  A      G    +  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 128 LVEHGADFEVS-----------NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRK----- 171
           L++                      G T L IA  +     V+ L+   AD++ +     
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 172 ---------SSKGNTALHDCAEAGSIEILKLLLSHGA-RMDV---DSYGMTPLLAAAVVG 218
                       G   L   A      I+  L  +G  + D+   DS G T L A   + 
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187

Query: 219 HQH 221
              
Sbjct: 188 DNT 190

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 26/128 (20%)

Query: 34  GATPLIMACRNGHKEIVEYLVK--ECKADVEETGAVMFDHETVEGAPPLWCAAAAGH--- 88
           G  PL +A       IV YL +    +AD+          +   G   L    A      
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRR--------QDSRGNTVLHALVAIADNTR 191

Query: 89  ------LPIVQFLVEHGAKVNSKTRTNS-------TPLRAACFDGHFGVVKYLVEHGADF 135
                   +   L+   AK+   T   +       +PL  A   G  G+ ++++      
Sbjct: 192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

Query: 136 EVSNRHGH 143
             ++ H H
Sbjct: 252 AAAHHHHH 259

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  114 bits (289), Expect = 5e-33
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG 142
            ++  H      LV  G+ + S        L  A   G    V+ L+ +GAD    +++G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 143 HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            T L +A   GH  +VK LL   AD+  +   G TA     + G+ ++ ++L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  113 bits (285), Expect = 2e-32
 Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 41  ACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
              + H      LV    + +                  L  AA AG    V+ L+ +GA
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMGSDL------GK-----KLLEAARAGQDDEVRILMANGA 48

Query: 101 KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKY 160
            V +K +  STPL  A  +GH  VVK L+E GAD    ++ G T   I+   G+  + + 
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108

Query: 161 L 161
           L
Sbjct: 109 L 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  111 bits (279), Expect = 2e-31
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG 175
                H      LV  G+            L+ A   G    V+ L++  AD+  K   G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 176 NTALHDCAEAGSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYL 226
           +T LH  A  G +E++KLLL  GA  DV   D +G T    +   G++ + E L
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGA--DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.2 bits (222), Expect = 5e-23
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYG 207
                H+     L+   + M    S     L + A AG  + +++L+++GA +   D  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 208 MTPLLAAAVVGHQHIVEYLI--GLNIVSRKE 236
            TPL  AA  GH  +V+ L+  G ++ ++ +
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G+TPL +A RNGH E+V+ L++   ADV          +   G      +   G+  + +
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEA-GADVXA--------QDKFGKTAFDISIDNGNEDLAE 107

Query: 94  FL 95
            L
Sbjct: 108 IL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  109 bits (276), Expect = 4e-31
 Identities = 40/88 (45%), Positives = 52/88 (59%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
           PL  AA  GHL +V+ L+E GA VN+K +   TPL  A  +GH  VVK L+E GAD    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNA 166
           +++G T L +A   GH  +VK LL   A
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  108 bits (273), Expect = 8e-31
 Identities = 41/89 (46%), Positives = 52/89 (58%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
           TPL  A  +GH  VVK L+E GAD    +++G T L +A   GH  +VK LL   AD+N 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGA 199
           K   G T LH  A  G +E++KLLL  GA
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  107 bits (269), Expect = 4e-30
 Identities = 45/100 (45%), Positives = 56/100 (56%), Gaps = 9/100 (9%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A RNGH E+V+ L+ E  ADV              G  PL  AA  GHL +V+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLL-EAGADVNAK--------DKNGRTPLHLAARNGHLEVVK 52

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA 133
            L+E GA VN+K +   TPL  A  +GH  VVK L+E GA
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 99.4 bits (249), Expect = 3e-27
 Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR 200
           +G T L +A   GH  +VK LL   AD+N K   G T LH  A  G +E++KLLL  GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 201 MDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++  D  G TPL  AA  GH  +V+ L+
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 99.3 bits (247), Expect = 7e-25
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 31/203 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP--- 90
           G TPL       + E+V++LVK   ++               G   L  A  + +     
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKH-GSNRLYG--------DNMGESCLVKAVKSVNNYDSG 181

Query: 91  -IVQFLVEHGAKVNSKTRTNSTPL----RAACFDGHFGVVKYLVEHGADFEVS------- 138
                L      +  +   N T L      +   G     KY ++    + V        
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241

Query: 139 -----NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
                                   +     +   +N + S G+T L+  A  G+I I+  
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301

Query: 194 LLSHGARMDV-DSYGMTPL-LAA 214
           LL +GA   + +  G+ P+   A
Sbjct: 302 LLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 96.3 bits (239), Expect = 1e-23
 Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 29/221 (13%)

Query: 28  TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG 87
           ++          ++  +  +E+ +      + ++        D     G  PL    +  
Sbjct: 91  SEGGSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIP----VDEH---GNTPLHWLTSIA 142

Query: 88  HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH---FGVVKYLVEH-GADFEVSNRHGH 143
           +L +V+ LV+HG+          + L  A    +    G  + L+++      + +    
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR 202

Query: 144 TCL----MIACYKGHYRIVKY--------LLSLNADMNRKSSKGNTALHDCAEAGSIEIL 191
           T L    + +   G     KY        ++       +  +    +  +       + +
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 192 KLLLSHGARMDV-----DSYGMTPLLAAAVVGHQHIVEYLI 227
              L     +       DS G T L  AA +G+  IV+ L+
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 303

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 90.1 bits (223), Expect = 2e-21
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)

Query: 72  ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG-VVKYLVE 130
           + ++    L          +   L    +  NS+  +++   +   FD     V      
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 131 HGADF-EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG--- 186
              +     + HG+T L       +  +VK+L+   ++     + G + L    ++    
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 178

Query: 187 SIEILKLLLSHGARM--DVDSYGMTPL----LAAAVVGHQHIVEYLI 227
                + LL +        DS   T L    + + + G     +Y +
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 225

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 2/139 (1%)

Query: 67  VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK 126
           V + +   + A PL  A AA  L   +FL+++GA VN        PL  A   GH G+  
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC 285

Query: 127 YLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG 186
             ++ GAD    +  G   L IA    +  IV  L    A M    +    A  +     
Sbjct: 286 LFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL--AKMREAEAAQGQAGDETYLDI 343

Query: 187 SIEILKLLLSHGARMDVDS 205
             +   +      ++   S
Sbjct: 344 FRDFSLMASDDPEKLSRRS 362

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 77.1 bits (189), Expect = 1e-16
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 2/137 (1%)

Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT--RTNSTPLRAACFDGHFGVVKYLVEHGA 133
           GA     +     LP +   + HGA VN     + N+TPL  A         ++L+++GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 134 DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
           +   ++  G   L  A   GH  +    L   AD+  + S+G   L    E  + +I+ L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319

Query: 194 LLSHGARMDVDSYGMTP 210
           L     R    + G   
Sbjct: 320 LRLAKMREAEAAQGQAG 336

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 73.3 bits (179), Expect = 2e-15
 Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFE--VSNRHGHTCLMIACYKGHYRIVKYLLSLNA 166
            +   RA+        +   + HGAD       +   T L+ A         ++LL   A
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 167 DMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEY 225
           ++N+  S G   LH     G   +  L L  GA +   DS G  PL  A    +  IV  
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319

Query: 226 L 226
           L
Sbjct: 320 L 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 145 CLMIACYKGHYRIVKYLLSLNADMNRKSS--KGNTALHDCAEAGSIEILKLLLSHGARMD 202
               + +      +   L+  AD+N  +      T L     A S+   + LL +GA ++
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 203 -VDSYGMTPLLAAAVVGHQHIVEYLI 227
             DS G  PL  A ++GH  +    +
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFL 288

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.7 bits (178), Expect = 3e-15
 Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 9/135 (6%)

Query: 69  FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTN------STPLRAACFDGH- 121
           F          LW A     L  V     +G                   L  A    + 
Sbjct: 144 FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ 203

Query: 122 --FGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTAL 179
               +V +++++G   +     G+T L  A        +K LL   A +   +  G TAL
Sbjct: 204 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263

Query: 180 HDCAEAGSIEILKLL 194
               +    E  +LL
Sbjct: 264 DIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.9 bits (176), Expect = 5e-15
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADF------EVSNRHGHTCLMIAC---YKGH 154
            +       L  A  +     V     +G DF        +       L +A     +  
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLA 213
             +V +++     ++ K++ GNTALH  A     + LKLLL   A +  V+  G T L  
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265

Query: 214 AAVVGHQHIVEYLI 227
           A    H+   E L 
Sbjct: 266 ARKKHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.2 bits (174), Expect = 8e-15
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 57  CKADVEETGAVMFDHETVEGAPPLWCAAA-AGHLPIVQFLVEHGAKVNSKTRTNSTPLRA 115
              D  +           E    L    A    LP+V F++++G  +++K    +T L  
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232

Query: 116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSS 173
           A        +K L++  A     N  G T L IA  K H    + L    A     + 
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL--EQAQAGTFAF 288

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 72.3 bits (177), Expect = 3e-15
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 137 VSNRHGHTCLMIAC---YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL 193
             +    T L +A     +    IV +L+  + ++++++ KG+TALH C    + E LKL
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223

Query: 194 LLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           LL   A ++  +  G TPL  A  + H+H  E L 
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 72.0 bits (176), Expect = 4e-15
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 35  ATPLIMACRNGHKEIVEYLVKECKADVEETGAVM-FDHETVEGAPPLWCAAAAG---HLP 90
               + +     K    + + +  AD  +    +   +        L  A  +     L 
Sbjct: 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 186

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
           IV FLV++   ++ +T   ST L   C   +   +K L+   A  E++N  G T L IA 
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246

Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGN 176
              H    + L    A   R +S  +
Sbjct: 247 RLKHEHCEELL--TQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.5 bits (167), Expect = 8e-14
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 96  VEHGAKVNSKTRT--NSTPLRAACFDG---HFGVVKYLVEHGADFEVSNRHGHTCLMIAC 150
           V+   K+        + T L  A          +V +LV++  + +     G T L   C
Sbjct: 154 VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC 213

Query: 151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
              +   +K LL   A +   +  G T L            +LL 
Sbjct: 214 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 66.5 bits (162), Expect = 6e-13
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 131 HGADF------EVSNRHGHTCLMIAC---YKGHYRIVKYLLSLNADMNRKSSKGNTALHD 181
           +G DF        +       L +A     +    +V +++     ++ K++ GNTALH 
Sbjct: 154 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213

Query: 182 CAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYL 226
            A     + LKLLL   A +  V+  G T L  A    H+   E L
Sbjct: 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 1/104 (0%)

Query: 59  ADVEETGAVMFDHETVEGAPPLWCAAA-AGHLPIVQFLVEHGAKVNSKTRTNSTPLRAAC 117
            D  +           E    L    A    LP+V F++++G  +++K    +T L  A 
Sbjct: 156 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA 215

Query: 118 FDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYL 161
                  +K L++  A     N  G T L IA  K H    + L
Sbjct: 216 LYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.0 bits (140), Expect = 6e-10
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 9/124 (7%)

Query: 80  LWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS------TPLRAACFDGHFG---VVKYLVE 130
           LW A     L  V     +G                   L  A    +     +V ++++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 131 HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI 190
           +G   +     G+T L  A        +K LL   A +   +  G TAL    +    E 
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255

Query: 191 LKLL 194
            +LL
Sbjct: 256 EELL 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-42  Score=266.57  Aligned_cols=214  Identities=26%  Similarity=0.281  Sum_probs=188.6

Q ss_pred             HhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC
Q psy599           27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT  106 (247)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  106 (247)
                      +...+..|.||||+|+..|+.+++++|++.+..      ....+..+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~   75 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE   75 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            345688999999999999999999999987322      11246677889999999999999999999999999999999


Q ss_pred             CCCChhHHHHHhcCChHHHHHHHHCCCC-----------------------------------------------cccCC
Q psy599          107 RTNSTPLRAACFDGHFGVVKYLVEHGAD-----------------------------------------------FEVSN  139 (247)
Q Consensus       107 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~  139 (247)
                      ..|.||||+|+..++.+++++|++++.+                                               ++..+
T Consensus        76 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (282)
T 1oy3_D           76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN  155 (282)
T ss_dssp             TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC
T ss_pred             CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC
Confidence            9999999999999999999999987754                                               56678


Q ss_pred             CCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCC-CCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHc
Q psy599          140 RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVV  217 (247)
Q Consensus       140 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~  217 (247)
                      ..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..
T Consensus       156 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTS
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHc
Confidence            88999999999999999999999999999998854 99999999999999999999999999997 88999999999999


Q ss_pred             CCHHHHHHHHhcChhhhhhccchhhhccC
Q psy599          218 GHQHIVEYLIGLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       218 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  246 (247)
                      ++.+++++|+++|++...+..++.+.+..
T Consensus       236 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          236 PNPILARLLRAHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             SCHHHHHHHHHTTCCCCCCC---------
T ss_pred             CCcHHHHHHHHcCCCcCcCCCcccccccc
Confidence            99999999999999999998888877654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.8e-41  Score=252.41  Aligned_cols=215  Identities=26%  Similarity=0.297  Sum_probs=193.3

Q ss_pred             HhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC
Q psy599           27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT  106 (247)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  106 (247)
                      +...|.+|.||||.|+..|+.+++++|++....     .+...+..+..|.||||+|+..|+.+++++|++.|++++.++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~   76 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ-----GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD   76 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence            456789999999999999999999999983211     123345667789999999999999999999999999999999


Q ss_pred             CCCChhHHHHHhcCChHHHHHHHHCCC----CcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccC-CCCCcHHHH
Q psy599          107 RTNSTPLRAACFDGHFGVVKYLVEHGA----DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS-SKGNTALHD  181 (247)
Q Consensus       107 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~  181 (247)
                      ..|.+|||+|+..++.+++++|++.+.    +++..+..|.||||.|+..++.+++++|++.|++++..+ ..|.||||+
T Consensus        77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  156 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence            999999999999999999999999887    788889999999999999999999999999999999888 789999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhccC
Q psy599          182 CAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       182 a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  246 (247)
                      |+..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|++.|++...+..++.+.++.
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  222 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV  222 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            9999999999999999999997 8899999999999999999999999999999888877776653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-40  Score=250.93  Aligned_cols=209  Identities=28%  Similarity=0.378  Sum_probs=195.0

Q ss_pred             hhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCC
Q psy599           28 TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTR  107 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  107 (247)
                      ...+..|.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.|++++.++.
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   75 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA---------GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA   75 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHc---------CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC
Confidence            34577899999999999999999999987         223455667899999999999999999999999999999999


Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCC-CCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHG-ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      .|.+|||+|+..|+.+++++|++++ .+++..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|
T Consensus        76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence            9999999999999999999999998 889999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          187 SIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       187 ~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|++...+..++.+.++
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  215 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ  215 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHH
Confidence            99999999999999987 888999999999999999999999999999988887777654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=256.90  Aligned_cols=208  Identities=24%  Similarity=0.329  Sum_probs=193.9

Q ss_pred             hhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCC
Q psy599           28 TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTR  107 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  107 (247)
                      ...+..|.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.|++++.++.
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  123 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQ---------GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA  123 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHT---------TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHC---------CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence            44578899999999999999999999986         223456677899999999999999999999999999999999


Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      .|.||||+|+..|+.+++++|++++++++..+ .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus       124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~  202 (285)
T 3d9h_A          124 DWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ  202 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            99999999999999999999999999987544 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          188 IEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      .+++++|+++|++++.+..|.||||+|+..++.+++++|++.|++.+.++.++.+.++
T Consensus       203 ~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  260 (285)
T 3d9h_A          203 RACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE  260 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            9999999999999988888999999999999999999999999999998888877765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.3e-41  Score=256.76  Aligned_cols=210  Identities=24%  Similarity=0.276  Sum_probs=164.8

Q ss_pred             HhhccCCCchHHHHHHhcC-------------cHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHH
Q psy599           27 VTKFKFGGATPLIMACRNG-------------HKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ   93 (247)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g-------------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~   93 (247)
                      ++..+..|.||||+|+..|             +.+++++|++.+.        ......+..|.||||+|+..|+.++++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~--------~~~~~~d~~g~t~L~~A~~~g~~~~v~   74 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA--------SLHNQTDRTGETALHLAARYSRSDAAK   74 (253)
T ss_dssp             ---------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccC--------CcccccCCCCCcHHHHHHHcCCHHHHH
Confidence            3456788999999999987             8999999998732        222445678999999999999999999


Q ss_pred             HHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCC-CcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccC
Q psy599           94 FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS  172 (247)
Q Consensus        94 ~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  172 (247)
                      +|++.|++++.++..|.||||+|+..++.+++++|++++. +++..+..|.||||+|+..++.+++++|++.|++++.++
T Consensus        75 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d  154 (253)
T 1yyh_A           75 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD  154 (253)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999999999999999999999999986 889999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhc
Q psy599          173 SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELL  244 (247)
Q Consensus       173 ~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  244 (247)
                      ..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|++...+...+.+.+
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl  227 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR  227 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHH
Confidence            9999999999999999999999999999987 88999999999999999999999999999888777665554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=8e-40  Score=244.47  Aligned_cols=197  Identities=25%  Similarity=0.285  Sum_probs=185.4

Q ss_pred             ccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC-CCCccCCC
Q psy599           30 FKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA-KVNSKTRT  108 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~  108 (247)
                      .+..|.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.+. +++.++..
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   91 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEA---------SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD   91 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHc---------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            467899999999999999999999987         22345567889999999999999999999999987 88999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      |.||||+|+..++.+++++|++++++++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus        92 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  171 (223)
T 2f8y_A           92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY  171 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhh
Q psy599          189 EILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       189 ~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                      +++++|+++|++++. +..|.||+++|+..++.+++++|+++|+....
T Consensus       172 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             HHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            999999999999987 88999999999999999999999999987543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.7e-40  Score=245.63  Aligned_cols=205  Identities=23%  Similarity=0.349  Sum_probs=188.2

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhC--CCCCc-cCCCCC
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG--AKVNS-KTRTNS  110 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~--~~~~~-~~~~~~  110 (247)
                      |.||||.|+..|+.+++++|++....        .....+..|.||||+|+..|+.+++++|++.|  .+++. .+..|.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~   73 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPS--------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW   73 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGG--------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcc--------ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCC
Confidence            78999999999999999999987432        23446778999999999999999999999999  55555 778999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCC--CCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHG--ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      ||||+|+..|+.+++++|++++  .+++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  153 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL  153 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999998  88899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHH-hcChhhhhhccchhhhccC
Q psy599          189 EILKLLLSHG-ARMDV-DSYGMTPLLAAAVVGHQHIVEYLI-GLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       189 ~~i~~Ll~~g-~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~  246 (247)
                      +++++|+++| ++++. +..|.||||+|+..++.+++++|+ +.|++...+..++.+.++.
T Consensus       154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~  214 (228)
T 2dzn_A          154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV  214 (228)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGG
T ss_pred             HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHH
Confidence            9999999999 88886 889999999999999999999999 8999999888887776653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.1e-40  Score=245.72  Aligned_cols=204  Identities=25%  Similarity=0.289  Sum_probs=168.8

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTP  112 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  112 (247)
                      .+.+|||.|+..|+.+.++++++..+..        ....+..|.||||+|+..|+.+++++|++.|++++.++..|.||
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~   76 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSL--------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP   76 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGG--------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhh--------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCH
Confidence            4678888888888888888888763322        34556778888888888888888888888888888888888888


Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHH
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK  192 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~  192 (247)
                      ||+|+..|+.+++++|++++++++..+..|.||||.|+..++.+++++|++.|.+++.++..|.||||+|+..|+.++++
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  156 (231)
T 3aji_A           77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH  156 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhc
Q psy599          193 LLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELL  244 (247)
Q Consensus       193 ~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  244 (247)
                      +|+++|++++. +..|.||||+|+..++.+++++|+++|++...+..++.+.+
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  209 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPL  209 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            88888888876 77888888888888888888888888888877666665544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.3e-40  Score=247.19  Aligned_cols=212  Identities=28%  Similarity=0.365  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcC
Q psy599            8 EYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAG   87 (247)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~   87 (247)
                      +.+.++.+++...    ..+...+..|.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+..|
T Consensus        18 ~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A           18 KLDELKERILADK----SLATRTDQDSRTALHWACSAGHTEIVEFLLQL---------GVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             CHHHHHHHHHHCG----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT---------TCCSCCCCTTSCCHHHHHHHHT
T ss_pred             CHHHHHHHHHhch----hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh---------CCCCCCcCCCCCCHHHHHHHcC
Confidence            3444555554332    23555688999999999999999999999987         2234556778999999999999


Q ss_pred             CHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Q psy599           88 HLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD  167 (247)
Q Consensus        88 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  167 (247)
                      +.+++++|+++|++++.++..|.||||+|+..++.+++++|++++.+++..+..|.||||.|+..|+.+++++|+++|++
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  164 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS  164 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       168 ~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      ++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+..++.+++++|++.|+.
T Consensus       165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            999999999999999999999999999999999987 89999999999999999999999998864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.8e-39  Score=247.23  Aligned_cols=201  Identities=23%  Similarity=0.254  Sum_probs=181.6

Q ss_pred             HHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC-CCC
Q psy599           25 QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA-KVN  103 (247)
Q Consensus        25 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~~  103 (247)
                      ......+..|.||||+|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.+. +++
T Consensus        48 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~  118 (253)
T 1yyh_A           48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEA---------SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD  118 (253)
T ss_dssp             ----CCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTT
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHc---------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            33445578999999999999999999999987         23345667889999999999999999999999987 899


Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA  183 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  183 (247)
                      .++..|.||||+|+..++.+++++|++++++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus       119 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  198 (253)
T 1yyh_A          119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA  198 (253)
T ss_dssp             CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          184 EAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       184 ~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      ..|+.+++++|+++|++++. +..|.||+++|+..|+.+++++|.+....+.
T Consensus       199 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~~  250 (253)
T 1yyh_A          199 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH  250 (253)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC------
T ss_pred             HCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhcc
Confidence            99999999999999999997 8999999999999999999999997655443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-40  Score=255.74  Aligned_cols=217  Identities=27%  Similarity=0.392  Sum_probs=165.3

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCH-HHHHHHHHhCCCCCccCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHL-PIVQFLVEHGAKVNSKTR  107 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~-~~~~~Ll~~~~~~~~~~~  107 (247)
                      ..|..+.++|+.||..|+.+++++|++....+... ........+..+.|||+.|+..+.. .+++.|++.|++++.++.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED-AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc-ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            34666789999999999999999999875443322 2233455667889999999988765 478899999999999999


Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      .|.||||+|+..|+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhccC
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  246 (247)
                      .+++++|+++|++++. +..|.||||+|+..|+.+++++|++.|++.+.++.++.++++.
T Consensus       165 ~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  224 (269)
T 4b93_B          165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDC  224 (269)
T ss_dssp             GGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGG
T ss_pred             HHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            9999999999999987 8889999999999999999999999999999888888777653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.4e-39  Score=254.10  Aligned_cols=205  Identities=28%  Similarity=0.376  Sum_probs=188.6

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +..|.||||+|+..|+.+++++|++.         +..++..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        55 d~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~  125 (351)
T 3utm_A           55 DGRKSTPLHLAAGYNRVRIVQLLLQH---------GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF  125 (351)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            56799999999999999999999987         233456678899999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCC---------------------------------------------------
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSN---------------------------------------------------  139 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~---------------------------------------------------  139 (247)
                      ||||+|+..|+.+++++|+++|++++..+                                                   
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (351)
T 3utm_A          126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF  205 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence            99999999999999999999998876544                                                   


Q ss_pred             ---CCCCCHHHHHHHc---ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHH
Q psy599          140 ---RHGHTCLMIACYK---GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL  212 (247)
Q Consensus       140 ---~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~  212 (247)
                         ..+.||+|.|+..   ++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||||
T Consensus       206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~  285 (351)
T 3utm_A          206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH  285 (351)
T ss_dssp             CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence               4567999999998   779999999999999999999999999999999999999999999999996 899999999


Q ss_pred             HHHHcCCHHHHHHHHhcChhhhhhccchhhhc
Q psy599          213 AAAVVGHQHIVEYLIGLNIVSRKEKIDALELL  244 (247)
Q Consensus       213 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  244 (247)
                      +|+..++.+++++|+++|+++..++.++.+.+
T Consensus       286 ~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal  317 (351)
T 3utm_A          286 RAALAGHLQTCRLLLSYGSDPSIISLQGFTAA  317 (351)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHcCcHHHHHHHHHcCCCCCCcCCCCCChh
Confidence            99999999999999999999988887776654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.4e-40  Score=253.05  Aligned_cols=220  Identities=19%  Similarity=0.194  Sum_probs=195.1

Q ss_pred             ccchhHHHHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHH
Q psy599            3 DLTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWC   82 (247)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~   82 (247)
                      .+...+.+.+..++....      +...+..|.||||+|+..|+.+++++|++. +.++        +..  .|.||||+
T Consensus         6 ~i~~~~~~~v~~lL~~~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~--------~~~--~g~t~L~~   68 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSKD------TFKADVHGHSASYYAIADNNVRLVCTLLNA-GALK--------NLL--ENEFPLHQ   68 (285)
T ss_dssp             TGGGCCHHHHHHHHHSTT------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGG--------SCC--TTCCHHHH
T ss_pred             HHHhcCHHHHHHHHHhCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCC--------CCC--CCCCHHHH
Confidence            444555666777776542      567789999999999999999999999987 2222        222  48999999


Q ss_pred             HHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCC-CCHHHHHHHcChHHHHHHH
Q psy599           83 AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG-HTCLMIACYKGHYRIVKYL  161 (247)
Q Consensus        83 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~L  161 (247)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||||.|+..|+.+++++|
T Consensus        69 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L  148 (285)
T 3kea_A           69 AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF  148 (285)
T ss_dssp             HTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 7999999999999999999


Q ss_pred             HhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCH-HHHHHHcCCHHHHHHHHhcChhhhhhccc
Q psy599          162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTP-LLAAAVVGHQHIVEYLIGLNIVSRKEKID  239 (247)
Q Consensus       162 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~-l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  239 (247)
                      +++|.+.... ..|.||||+|+..|+.+++++|+++|++++. +..|.|| ||+|+..++.+++++|+++|++.......
T Consensus       149 l~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~  227 (285)
T 3kea_A          149 LSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLE  227 (285)
T ss_dssp             HTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGG
T ss_pred             HhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChh
Confidence            9999877333 2789999999999999999999999999997 8889998 99999999999999999999999887654


Q ss_pred             h
Q psy599          240 A  240 (247)
Q Consensus       240 ~  240 (247)
                      .
T Consensus       228 a  228 (285)
T 3kea_A          228 N  228 (285)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.2e-38  Score=234.30  Aligned_cols=192  Identities=27%  Similarity=0.364  Sum_probs=179.5

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +..+.||||.|+..|+.+.++.|+...+.+        .+..+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   73 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ--------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD   73 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC--------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCC--------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            456889999999999999999999874333        355677899999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHH-HCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcC-CCccccCCCCCcHHHHHHHhCC-
Q psy599          111 TPLRAACFDGHFGVVKYLV-EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGS-  187 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~-  187 (247)
                      ||||+|+..|+.+++++|+ ..+.+++..+..|.||||.|+..++.+++++|++.| .+++.++..|.||||+|+..++ 
T Consensus        74 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  153 (201)
T 3hra_A           74 SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG  153 (201)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc
Confidence            9999999999999999999 667799999999999999999999999999999999 8999999999999999999998 


Q ss_pred             ----HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          188 ----IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       188 ----~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                          .+++++|+++|++++. +..|.|||++|+..++.+++++|+++|
T Consensus       154 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          154 NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             SHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                9999999999999997 889999999999999999999999987

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.6e-40  Score=250.47  Aligned_cols=201  Identities=25%  Similarity=0.366  Sum_probs=181.0

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..+.+|.||||.|+..|+.+++++|++.....     +..++..+..|.||||+|+..|+.+++++|++.|++++.++..
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   77 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-----LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR   77 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC----------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhcc-----HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            35788999999999999999999999763321     1235667788999999999999999999999999999999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCC------cccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCC-CCCcHHHH
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGAD------FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSS-KGNTALHD  181 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~  181 (247)
                      |.||||+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  157 (236)
T 1ikn_D           78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL  157 (236)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence            99999999999999999999999865      467788899999999999999999999999999999987 99999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          182 CAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       182 a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      |+..|+.+++++|+++|++++. +..|.|||++|+..++.+++++|+++|++..
T Consensus       158 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999999999999999997 8899999999999999999999999999876

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-37  Score=238.45  Aligned_cols=205  Identities=31%  Similarity=0.411  Sum_probs=140.4

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +..|.||||.|+..|+.+++++|++.+         ......+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  106 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHG---------ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF  106 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT---------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC---------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccC
Confidence            566888999999999999999998762         22344455677777777777777777777777777777777777


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccC----------CCCCCCHHHHHHHcChHHHHHHHHhc-CCCccccCCCCCcHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVS----------NRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTAL  179 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l  179 (247)
                      ||||+|+..|+.+++++|++++.+++..          +..|.||||.|+..|+.+++++|++. |.+++..+..|.|||
T Consensus       107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  186 (285)
T 1wdy_A          107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  186 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH
Confidence            7777777777777777777776666655          55566777777777777777766665 666666666666666


Q ss_pred             HHHHHhCC----HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh-cChhhhhhccchhhhc
Q psy599          180 HDCAEAGS----IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG-LNIVSRKEKIDALELL  244 (247)
Q Consensus       180 ~~a~~~~~----~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~  244 (247)
                      |.|+..++    .+++++|+++|++++. +..|.||||+|+..++.+++++|++ .|++.+.+..++.+.+
T Consensus       187 ~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l  257 (285)
T 1wdy_A          187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL  257 (285)
T ss_dssp             HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH
T ss_pred             HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH
Confidence            66666666    6666666666666664 5566666666666666666666666 5666655555444433

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-37  Score=239.81  Aligned_cols=199  Identities=27%  Similarity=0.372  Sum_probs=185.8

Q ss_pred             ccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCcc----
Q psy599           30 FKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK----  105 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----  105 (247)
                      .+..|.||||+|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.|++++.+    
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  138 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLLKLFLSK---------GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK  138 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT---------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH
Confidence            367899999999999999999999987         2334566778999999999999999999999999999877    


Q ss_pred             ------CCCCChhHHHHHhcCChHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcCh----HHHHHHHHhcCCCccccCCC
Q psy599          106 ------TRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLMIACYKGH----YRIVKYLLSLNADMNRKSSK  174 (247)
Q Consensus       106 ------~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~  174 (247)
                            +..|.+|||+|+..|+.+++++|++. +.+++..+..|.||+|.|+..++    .+++++|+++|++++.++..
T Consensus       139 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~  218 (285)
T 1wdy_A          139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  218 (285)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT
T ss_pred             HHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC
Confidence                  67899999999999999999999987 99999999999999999999999    99999999999999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHH-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhc
Q psy599          175 GNTALHDCAEAGSIEILKLLLS-HGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEK  237 (247)
Q Consensus       175 ~~t~l~~a~~~~~~~~i~~Ll~-~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  237 (247)
                      |.||||+|+..|+.+++++|++ .|++++. +..|.|||++|+..++.+++++|+++|+++..++
T Consensus       219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            9999999999999999999999 8999987 8899999999999999999999999999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=8.2e-39  Score=243.90  Aligned_cols=200  Identities=26%  Similarity=0.311  Sum_probs=175.7

Q ss_pred             CchHHHHHHhcCcHH----HHHHHHHhcccCccccccccccccCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCCcc-
Q psy599           34 GATPLIMACRNGHKE----IVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA---GHLPIVQFLVEHGAKVNSK-  105 (247)
Q Consensus        34 g~t~L~~A~~~g~~~----~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~-  105 (247)
                      |.||||.|+..|+.+    ++++|++. +.+++..    ....+..|.||||+|+..   |+.+++++|++.|++++.. 
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~----~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   76 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDS----AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK   76 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSG----GGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccc----cccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh
Confidence            789999999999997    55666655 2222110    012678899999999999   9999999999998776533 


Q ss_pred             ----------CCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCC-------------CCCHHHHHHHcChHHHHHHHH
Q psy599          106 ----------TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH-------------GHTCLMIACYKGHYRIVKYLL  162 (247)
Q Consensus       106 ----------~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~Ll  162 (247)
                                +..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|+
T Consensus        77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  156 (256)
T 2etb_A           77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL  156 (256)
T ss_dssp             CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                      367999999999999999999999999999998886             999999999999999999999


Q ss_pred             h---cCCCccccCCCCCcHHHHHHH--hCCHH-------HHHHHHHcCCCC-------CC-CCCCCCHHHHHHHcCCHHH
Q psy599          163 S---LNADMNRKSSKGNTALHDCAE--AGSIE-------ILKLLLSHGARM-------DV-DSYGMTPLLAAAVVGHQHI  222 (247)
Q Consensus       163 ~---~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~i~~Ll~~g~~~-------~~-~~~g~t~l~~A~~~~~~~~  222 (247)
                      +   .|++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +. +..|.||||+|+..|+.++
T Consensus       157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  236 (256)
T 2etb_A          157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI  236 (256)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence            9   999999999999999999999  77888       999999999999       65 8899999999999999999


Q ss_pred             HHHHHhcChhhhhhcc
Q psy599          223 VEYLIGLNIVSRKEKI  238 (247)
Q Consensus       223 ~~~Ll~~g~~~~~~~~  238 (247)
                      +++|+++|........
T Consensus       237 v~~Ll~~g~~~~~~~~  252 (256)
T 2etb_A          237 FRHILQREFSGAAAHH  252 (256)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCCCCccc
Confidence            9999999998876654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-38  Score=246.13  Aligned_cols=207  Identities=29%  Similarity=0.388  Sum_probs=187.0

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +..|.|||+.||..|+.+++++|++.+         ..++..+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g---------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~  107 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERG---------ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW  107 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHC---------CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcC---------CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            446789999999999999999999872         23455677899999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCcc--------------------
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMN--------------------  169 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~--------------------  169 (247)
                      ||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..+..+++++++.. +.+++                    
T Consensus       108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (299)
T 1s70_B          108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS  187 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999877643 33332                    


Q ss_pred             ------ccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhh
Q psy599          170 ------RKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALE  242 (247)
Q Consensus       170 ------~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  242 (247)
                            ..+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|++.|++...++.++.+
T Consensus       188 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  267 (299)
T 1s70_B          188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT  267 (299)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence                  3556799999999999999999999999999997 889999999999999999999999999999988888877


Q ss_pred             hccC
Q psy599          243 LLGA  246 (247)
Q Consensus       243 ~~~~  246 (247)
                      .++-
T Consensus       268 ~l~~  271 (299)
T 1s70_B          268 AFDV  271 (299)
T ss_dssp             TTTS
T ss_pred             HHHH
Confidence            7654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1e-37  Score=222.49  Aligned_cols=158  Identities=40%  Similarity=0.509  Sum_probs=149.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHH
Q psy599           78 PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI  157 (247)
Q Consensus        78 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  157 (247)
                      +.|+.|++.|+.++++.|++.|++++.++..|.||+++|+..++.+++++|++.|++++.++..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhh
Q psy599          158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       158 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. +..|+|||++|+..|+.+++++|+++|++...
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            9999999999999999999999999999999999999999999997 89999999999999999999999999997643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.9e-38  Score=239.55  Aligned_cols=195  Identities=21%  Similarity=0.255  Sum_probs=177.2

Q ss_pred             hhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC----CCC
Q psy599           28 TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA----KVN  103 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~----~~~  103 (247)
                      ...+..|.||||.|+..|+.+++++|++.         +......+..|.||||+|+..|+.+++++|++.+.    +++
T Consensus        40 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  110 (241)
T 1k1a_A           40 DIYNNLRQTPLHLAVITTLPSVVRLLVTA---------GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE  110 (241)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT
T ss_pred             CcccccCCCHHHHHHHcCCHHHHHHHHHc---------CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence            34467799999999999999999999986         23335567789999999999999999999999987    788


Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCC-CCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDC  182 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  182 (247)
                      ..+..|.+|||+|+..++.+++++|++++++++..+ ..|.||||.|+..++.+++++|+++|++++.++..|.||||+|
T Consensus       111 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  190 (241)
T 1k1a_A          111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA  190 (241)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            889999999999999999999999999999999888 7899999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCh
Q psy599          183 AEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNI  231 (247)
Q Consensus       183 ~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  231 (247)
                      +..|+.+++++|+++|++++. +..|.||+++|+..++.++++.|.++++
T Consensus       191 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            999999999999999999997 8899999999999999999999998764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1e-37  Score=255.14  Aligned_cols=203  Identities=27%  Similarity=0.405  Sum_probs=172.6

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTP  112 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  112 (247)
                      .|.||||.|+..|+.+++++|++.         +......+..|.||||+|+..|+.+++++|++.|.+++.++..|.||
T Consensus       178 ~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  248 (437)
T 1n11_A          178 NGLTPLHVAVHHNNLDIVKLLLPR---------GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP  248 (437)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGG---------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC---------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            444555555555555555555443         12234455678899999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHH
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK  192 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~  192 (247)
                      ||+|+..|+.+++++|++++++++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus       249 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~  328 (437)
T 1n11_A          249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK  328 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhc
Q psy599          193 LLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELL  244 (247)
Q Consensus       193 ~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  244 (247)
                      +|+++|++++. +..|.||||+|+..|+.+++++|++.|+++..++.++.+.+
T Consensus       329 ~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l  381 (437)
T 1n11_A          329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL  381 (437)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHH
T ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHH
Confidence            99999999987 88899999999999999999999999999988777666554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-37  Score=254.34  Aligned_cols=195  Identities=34%  Similarity=0.440  Sum_probs=95.5

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +..|.||||.|+..|+.+++++|++.+         ...+..+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus        11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g---------~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   81 (437)
T 1n11_A           11 GESGLTPLHVASFMGHLPIVKNLLQRG---------ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ   81 (437)
T ss_dssp             ----CCHHHHHHHHTCHHHHHHHHHTT---------CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcC---------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            444555555555555555555555541         11122334445555555555555555555555555555555555


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.+.+.+..+..|.||||+|+..|+.++
T Consensus        82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A           82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            55555555555555555555555555555555555555555555555555555544444444444455555555555555


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          191 LKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      +++|+++|++++. +..|.|||++|+..++.+++++|++.|....
T Consensus       162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  206 (437)
T 1n11_A          162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH  206 (437)
T ss_dssp             HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC
T ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            5555555444443 4444444444444444444444444444433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.6e-38  Score=252.88  Aligned_cols=195  Identities=22%  Similarity=0.234  Sum_probs=165.0

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHh----CCCCCc--
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEH----GAKVNS--  104 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~----~~~~~~--  104 (247)
                      +..|.||||+|+..|+.+++++|++.+.           ...+..|.||||+|+..|+.+++++|++.    |.+++.  
T Consensus        50 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  118 (364)
T 3ljn_A           50 NRFGCTALHLACKFGCVDTAKYLASVGE-----------VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLL  118 (364)
T ss_dssp             CTTCCCHHHHHHHHCCHHHHHHHHHHCC-----------CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCC-----------CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHH
Confidence            5567888888888888888888887632           11224678888888888888888888887    666665  


Q ss_pred             ---------------cCCCCChhHHHHHhcC--ChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Q psy599          105 ---------------KTRTNSTPLRAACFDG--HFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD  167 (247)
Q Consensus       105 ---------------~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  167 (247)
                                     ++..|.||||+|+..|  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          119 NECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             TCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred             hhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                           7778899999999999  89999999999999999999999999999999999999999988887


Q ss_pred             -----ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhh
Q psy599          168 -----MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKE  236 (247)
Q Consensus       168 -----~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  236 (247)
                           ++..+..|.||||+|+..|+.+++++|+++|++++. +..|.|||++|+..|+.+++++|++.|.+....
T Consensus       199 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          199 KSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             SSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred             cccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhh
Confidence                 888888999999999999999999999999999887 888999999999999999999999988876543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-37  Score=247.91  Aligned_cols=206  Identities=21%  Similarity=0.228  Sum_probs=187.6

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..+..|.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.|++++.  ..
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~---------g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~   83 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIET---------GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WH   83 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cC
Confidence            3467799999999999999999999987         233466778899999999999999999999999996554  57


Q ss_pred             CChhHHHHHhcCChHHHHHHHHC----CCCccc-----------------CCCCCCCHHHHHHHcC--hHHHHHHHHhcC
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEH----GADFEV-----------------SNRHGHTCLMIACYKG--HYRIVKYLLSLN  165 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~----~~~~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~  165 (247)
                      |.||||+|+..|+.+++++|++.    +.+++.                 .+..|.||||+|+..|  +.+++++|+++|
T Consensus        84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g  163 (364)
T 3ljn_A           84 GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG  163 (364)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            89999999999999999999998    777776                 8889999999999999  999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCC-----CCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccc
Q psy599          166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR-----MDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKID  239 (247)
Q Consensus       166 ~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~-----~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  239 (247)
                      ++++.++..|.||||+|+..|+.+++++|+++|++     ++. +..|.||||+|+..|+.+++++|+++|++.+....+
T Consensus       164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~  243 (364)
T 3ljn_A          164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNE  243 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            99999999999999999999999999999999998     776 888999999999999999999999999999888877


Q ss_pred             hhhhcc
Q psy599          240 ALELLG  245 (247)
Q Consensus       240 ~~~~~~  245 (247)
                      +.+.++
T Consensus       244 g~tpL~  249 (364)
T 3ljn_A          244 HTVPLY  249 (364)
T ss_dssp             SCCHHH
T ss_pred             CCCHHH
Confidence            766654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.7e-38  Score=244.32  Aligned_cols=210  Identities=23%  Similarity=0.292  Sum_probs=174.3

Q ss_pred             hhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCC--
Q psy599           28 TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA---GHLPIVQFLVEHGAKV--  102 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~--  102 (247)
                      ...+..|.||||.|+..|+.++++.|++......... .......+..|.||||+|+..   |+.+++++|++.|+++  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRL-TDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCT-TSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhccccc-CCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            3467889999999999999999999997522111000 001123467899999999987   9999999999987542  


Q ss_pred             ---------CccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCC--------------CCCCHHHHHHHcChHHHHH
Q psy599          103 ---------NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR--------------HGHTCLMIACYKGHYRIVK  159 (247)
Q Consensus       103 ---------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~  159 (247)
                               ...+..|.||||+|+..|+.+++++|+++|++++..+.              .|.||||+|+..|+.++++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                     22566899999999999999999999999999998887              7999999999999999999


Q ss_pred             HHHh---cCCCccccCCCCCcHHHHHHHhCC---------HHHHHHHHHcCCCCC--------CCCCCCCHHHHHHHcCC
Q psy599          160 YLLS---LNADMNRKSSKGNTALHDCAEAGS---------IEILKLLLSHGARMD--------VDSYGMTPLLAAAVVGH  219 (247)
Q Consensus       160 ~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~i~~Ll~~g~~~~--------~~~~g~t~l~~A~~~~~  219 (247)
                      +|++   .|++++.+|..|+||||+|+..|+         .+++++|+++|++++        .+..|.||||+|+..|+
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            9999   999999999999999999999998         899999999999986        38889999999999999


Q ss_pred             HHHHHHHHhcCh-hhhhhcc
Q psy599          220 QHIVEYLIGLNI-VSRKEKI  238 (247)
Q Consensus       220 ~~~~~~Ll~~g~-~~~~~~~  238 (247)
                      .+++++|+++|+ ++.....
T Consensus       246 ~~iv~~Ll~~ga~dp~~~~~  265 (273)
T 2pnn_A          246 IGVLAYILQREIHEPECRHA  265 (273)
T ss_dssp             HHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHCCCCCchhhhh
Confidence            999999999999 5554443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=228.71  Aligned_cols=198  Identities=26%  Similarity=0.325  Sum_probs=174.8

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..+..|.||||.|+..|+.+++++|++.+...        ....+..|.||||+|+..|+.+++++|++.|++++.++..
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--------~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  108 (240)
T 3eu9_A           37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIV--------DQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE  108 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--------hhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence            34678999999999999999999999873322        2333456899999999999999999999999999999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh-HHHHHHHHhcCCCccccCC-CCCcHHHHHHHhC
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH-YRIVKYLLSLNADMNRKSS-KGNTALHDCAEAG  186 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~  186 (247)
                      |.+|+|+|+..++.+++++|++++++++..+..|.||+|.|+..++ .+++++|++.+++++..+. .|.||||+|+..|
T Consensus       109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence            9999999999999999999999999999999999999999996665 8899999999999998886 8999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          187 SIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       187 ~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      +.+++++|+++|++++. +..|.||+++|+..++.+++++|++.|....
T Consensus       189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             CHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence            99999999999999987 8889999999999999999999999887654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=244.36  Aligned_cols=196  Identities=27%  Similarity=0.404  Sum_probs=151.0

Q ss_pred             hhccCCCchHHHHHHhcCcH-HHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC
Q psy599           28 TKFKFGGATPLIMACRNGHK-EIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT  106 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  106 (247)
                      ...+..|.|||+.|+..++. .++++|++.         +..++..+..|.||||+|+..|+.+++++|++.|++++.++
T Consensus        46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~---------Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~  116 (269)
T 4b93_B           46 SAADPEFCHPLCQCPKCAPAQKRLAKVPAS---------GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN  116 (269)
T ss_dssp             -----------------------------C---------CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC
T ss_pred             cccCccCCCHHHHHHHhCCHHHHHHHHHHC---------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccC
Confidence            34466789999999998875 477888875         33346677899999999999999999999999999999999


Q ss_pred             CCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          107 RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       107 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      ..|.||+++|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus       117 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g  196 (269)
T 4b93_B          117 ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK  196 (269)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCC-HHHHHHHHhcChh
Q psy599          187 SIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH-QHIVEYLIGLNIV  232 (247)
Q Consensus       187 ~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~-~~~~~~Ll~~g~~  232 (247)
                      +.+++++|+++|++++. +..|+|||++|+..++ .++++++...+..
T Consensus       197 ~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          197 HVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence            99999999999999997 8999999999998775 4555556555543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.5e-37  Score=230.70  Aligned_cols=191  Identities=28%  Similarity=0.438  Sum_probs=177.8

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhC-CCCCccCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG-AKVNSKTR  107 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~  107 (247)
                      ..+..|.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.+ .+++.++.
T Consensus        39 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  109 (237)
T 3b7b_A           39 TCSEDQRTPLMEAAENNHLEAVKYLIKA---------GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD  109 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTT---------TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhC---------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC
Confidence            3467899999999999999999999976         2334556778999999999999999999999998 78999999


Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      .|.+|||+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus       110 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  189 (237)
T 3b7b_A          110 GGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR  189 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG  228 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~  228 (247)
                      .+++++|+++|++++. +..|.||+++|+..++.+.+..+++
T Consensus       190 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997 8999999999999999877766654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.6e-38  Score=250.85  Aligned_cols=212  Identities=25%  Similarity=0.318  Sum_probs=185.0

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      ..|.||||+|+..|+.+++++|+........ ..+...+..|..|.||||+|+..|+.+++++|++.|++++.++..|.|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll-~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECI-AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  201 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHH-HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH-hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence            6799999999999999999888742100000 013334667789999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCC---CCcccCCCCCCCHHHHHHHcC---hHHHHHHHHhcCCCccc--------cCCCCCc
Q psy599          112 PLRAACFDGHFGVVKYLVEHG---ADFEVSNRHGHTCLMIACYKG---HYRIVKYLLSLNADMNR--------KSSKGNT  177 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~--------~~~~~~t  177 (247)
                      |||+|+..|+.+++++|++++   .+++..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.|
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence            999999999999999999987   788889999999999999988   89999999999998875        5678999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhc
Q psy599          178 ALHDCAEAGSIEILKLLLSHG-ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELL  244 (247)
Q Consensus       178 ~l~~a~~~~~~~~i~~Ll~~g-~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  244 (247)
                      |||+|+..|+.+++++|+++| ++++. +..|.||||+|+..|+.+++++|+++|++.+.++.++.+.+
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l  350 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTAR  350 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHH
Confidence            999999999999999999886 88886 88899999999999999999999999999888777665554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-37  Score=247.07  Aligned_cols=196  Identities=23%  Similarity=0.338  Sum_probs=180.2

Q ss_pred             hhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhC---CCCCc
Q psy599           28 TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG---AKVNS  104 (247)
Q Consensus        28 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~---~~~~~  104 (247)
                      ...+..|.||||+|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.+   .+++.
T Consensus       160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---------ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  230 (373)
T 2fo1_E          160 NAMDCDENTPLMLAVLARRRRLVAYLMKA---------GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE  230 (373)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHT---------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC
T ss_pred             cCCCCCCCCHHHHHHHcChHHHHHHHHHC---------CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh
Confidence            44578899999999999999999999987         2334566778999999999999999999999987   78999


Q ss_pred             cCCCCChhHHHHHhcC---ChHHHHHHHHCCCCccc--------CCCCCCCHHHHHHHcChHHHHHHHHhcC-CCccccC
Q psy599          105 KTRTNSTPLRAACFDG---HFGVVKYLVEHGADFEV--------SNRHGHTCLMIACYKGHYRIVKYLLSLN-ADMNRKS  172 (247)
Q Consensus       105 ~~~~~~~~l~~a~~~~---~~~~~~~Ll~~~~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~  172 (247)
                      .+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++++ ++++.+|
T Consensus       231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d  310 (373)
T 2fo1_E          231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD  310 (373)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcC
Confidence            9999999999999998   89999999999998875        5678999999999999999999999886 9999999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          173 SKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       173 ~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      ..|.||||+|+..|+.+++++|+++|++++. +..|.|||++|+..|+.+++++|+++|..
T Consensus       311 ~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999999997 88999999999999999999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.8e-37  Score=236.77  Aligned_cols=213  Identities=25%  Similarity=0.265  Sum_probs=162.9

Q ss_pred             ccCCCchHHHHHHhcCcHHHHHHHHHhcccCcccc--ccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCC
Q psy599           30 FKFGGATPLIMACRNGHKEIVEYLVKECKADVEET--GAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTR  107 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  107 (247)
                      ....|.|+||+|+..|+.+.+..++...+.+....  ........+..|.||||+|+..|+.+++++|++.|++++.++.
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~   90 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA   90 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            45679999999999999888888776543322111  1223456788999999999999999999999999999999999


Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      .|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..|+.+++++|++.|++++..+ .|.||||+|+..|+
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGH  169 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999987654 49999999999999


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhc
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELL  244 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  244 (247)
                      .+++++|+++|++++. +..|.|||++|+..++.+++++|++.|++.+. ...+-+.+
T Consensus       170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L  226 (285)
T 3d9h_A          170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPL  226 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHH
Confidence            9999999999999986 88999999999999999999999999999875 33343433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=6.1e-37  Score=229.50  Aligned_cols=209  Identities=22%  Similarity=0.347  Sum_probs=182.8

Q ss_pred             hHHHHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccc-cCcCCCCHHHHHHH
Q psy599            7 DEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDH-ETVEGAPPLWCAAA   85 (247)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~t~l~~A~~   85 (247)
                      .+.+.++.+++...    ......+..|.||||+|+..|+.+++++|++.+..       ..... .+..|.||||+|+.
T Consensus        13 g~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-------~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A           13 NEFFKVQELLHSKP----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN-------VNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             TCHHHHHHHHHHCG----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT-------CCGGGCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHhcCc----cccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc-------ccccccCCCCCCCHHHHHHH
Confidence            34455555554432    33444688999999999999999999999997321       11222 66789999999999


Q ss_pred             cCCHHHHHHHHHhC--CCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHh
Q psy599           86 AGHLPIVQFLVEHG--AKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLS  163 (247)
Q Consensus        86 ~~~~~~~~~Ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  163 (247)
                      .|+.+++++|++.|  .+++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  8889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCccccCCCCCcHHHHHHHhCCHHHHHHHH-HcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy599          164 LN-ADMNRKSSKGNTALHDCAEAGSIEILKLLL-SHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGL  229 (247)
Q Consensus       164 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll-~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~  229 (247)
                      .| .+++.+|..|.||||+|+..|+.+++++|+ ++|++++. +..|.||+++|+..   +++++|+++
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99 999999999999999999999999999999 99999997 89999999999754   677777753

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.3e-37  Score=229.97  Aligned_cols=208  Identities=25%  Similarity=0.322  Sum_probs=188.8

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC-C
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT-R  107 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~  107 (247)
                      ..+..|.|+|+.|+..|+.+++++|++.         +..++..+..|.||||+|+..|+.+++++|++.|.+++... .
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   74 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEA---------GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD   74 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHc---------CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC
Confidence            4577899999999999999999999986         23345567789999999999999999999999999887655 4


Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      .|.+|||+|+..|+.+++++|++++++++..+..|.||+|.|+..++.+++++|+++|++++.++..|.||||+|+..+.
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999997776


Q ss_pred             -HHHHHHHHHcCCCCCC-CC-CCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          188 -IEILKLLLSHGARMDV-DS-YGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       188 -~~~i~~Ll~~g~~~~~-~~-~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                       .+++++|++.|++++. +. .|.||||+|+..++.+++++|++.|++......++.+.++
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  215 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALD  215 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHH
T ss_pred             hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence             8999999999999987 44 8999999999999999999999999999887776655543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.5e-36  Score=215.30  Aligned_cols=158  Identities=37%  Similarity=0.553  Sum_probs=146.8

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHH
Q psy599           36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRA  115 (247)
Q Consensus        36 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  115 (247)
                      +.|+.||..|+.+++++|++.         +..++..|..|.||+|+|+..++.+++++|++.|++++.++..|.||||+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~---------Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~   76 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN---------GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH   76 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC---------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHH
Confidence            469999999999999999987         33346678899999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q psy599          116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL  195 (247)
Q Consensus       116 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll  195 (247)
                      |+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|+
T Consensus        77 A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCC
Q psy599          196 SHGARMD  202 (247)
Q Consensus       196 ~~g~~~~  202 (247)
                      ++|++++
T Consensus       157 ~~GA~ie  163 (169)
T 4gpm_A          157 KQGGWLE  163 (169)
T ss_dssp             TC-----
T ss_pred             HCCCCcC
Confidence            9999886

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=9.7e-37  Score=232.93  Aligned_cols=202  Identities=26%  Similarity=0.310  Sum_probs=173.7

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHH----hcccCccccccccccccCcCCCCHHHHHH---HcCCHHHHHHHHHhCCC--
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVK----ECKADVEETGAVMFDHETVEGAPPLWCAA---AAGHLPIVQFLVEHGAK--  101 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~----~~~~~~~~~~~~~~~~~~~~~~t~l~~A~---~~~~~~~~~~Ll~~~~~--  101 (247)
                      +..|.|+||.|+..|+.+.++.|++    . +..+...    ....+..|.||||+|+   ..|+.+++++|++.|.+  
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~----~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~   76 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH-KKRLTDE----EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG   76 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSG----GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcchh----hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccccc
Confidence            4568899999999999996666665    4 2222111    0123467999999999   67999999999998743  


Q ss_pred             ---------CCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCC--------------CCCCCHHHHHHHcChHHHH
Q psy599          102 ---------VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN--------------RHGHTCLMIACYKGHYRIV  158 (247)
Q Consensus       102 ---------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~  158 (247)
                               .+..+..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..|+.+++
T Consensus        77 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  156 (260)
T 3jxi_A           77 NMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV  156 (260)
T ss_dssp             CHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHH
T ss_pred             chHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHH
Confidence                     44555689999999999999999999999999999988              6899999999999999999


Q ss_pred             HHHHh---cCCCccccCCCCCcHHHHHHHhCC---------HHHHHHHHHcCCCC-------CC-CCCCCCHHHHHHHcC
Q psy599          159 KYLLS---LNADMNRKSSKGNTALHDCAEAGS---------IEILKLLLSHGARM-------DV-DSYGMTPLLAAAVVG  218 (247)
Q Consensus       159 ~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~i~~Ll~~g~~~-------~~-~~~g~t~l~~A~~~~  218 (247)
                      ++|++   .|++++.+|..|+||||+|+..++         .+++++|+++|+++       +. +..|.||||+|+..|
T Consensus       157 ~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             HHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence            99999   999999999999999999999887         79999999999998       44 889999999999999


Q ss_pred             CHHHHHHHHhcChhhhhhc
Q psy599          219 HQHIVEYLIGLNIVSRKEK  237 (247)
Q Consensus       219 ~~~~~~~Ll~~g~~~~~~~  237 (247)
                      +.+++++|+++|.......
T Consensus       237 ~~~~v~~Ll~~g~~~~~~~  255 (260)
T 3jxi_A          237 KIGIFQHIIRREIADAAAH  255 (260)
T ss_dssp             CHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHhCCCccccc
Confidence            9999999999999887653

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.8e-36  Score=238.81  Aligned_cols=207  Identities=28%  Similarity=0.324  Sum_probs=187.4

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +..+.|+|+.|+..|+.+.++.++...+.+        .+..+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~--------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   92 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVN--------CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL   92 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTT--------CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCC--------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            345679999999999999999999763333        455677899999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccC------------------
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS------------------  172 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~------------------  172 (247)
                      ||||+|+..|+.+++++|++++++++..+..|.||||+|+..|+.+++++|+++|++++..+                  
T Consensus        93 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A           93 VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred             cHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999876544                  


Q ss_pred             ------------------------------------CCCCcHHHHHHHh---CCHHHHHHHHHcCCCCCC-CCCCCCHHH
Q psy599          173 ------------------------------------SKGNTALHDCAEA---GSIEILKLLLSHGARMDV-DSYGMTPLL  212 (247)
Q Consensus       173 ------------------------------------~~~~t~l~~a~~~---~~~~~i~~Ll~~g~~~~~-~~~g~t~l~  212 (247)
                                                          ..|.||||+|+..   +..+++++|+++|++++. +..|.||||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  252 (351)
T 3utm_A          173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH  252 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHH
Confidence                                                4567999999998   568999999999999987 889999999


Q ss_pred             HHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          213 AAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       213 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +|+..|+.+++++|++.|++.+.+...+.+.++
T Consensus       253 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~  285 (351)
T 3utm_A          253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALH  285 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            999999999999999999999888777666554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-36  Score=226.01  Aligned_cols=192  Identities=23%  Similarity=0.263  Sum_probs=172.2

Q ss_pred             CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHH
Q psy599           45 GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGV  124 (247)
Q Consensus        45 g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  124 (247)
                      |+.+++++|++++        .......+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++
T Consensus         2 g~~~~i~~Ll~~g--------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   73 (223)
T 2f8y_A            2 DAPAVISDFIYQG--------ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV   73 (223)
T ss_dssp             ---CCEETTEETT--------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHHcC--------CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            5666677777652        22223446789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCC-CcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC
Q psy599          125 VKYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV  203 (247)
Q Consensus       125 ~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~  203 (247)
                      +++|++++. +++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus        74 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            999999986 8888999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             -CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhc
Q psy599          204 -DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELL  244 (247)
Q Consensus       204 -~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  244 (247)
                       +..|.|||++|+..++.+++++|+++|++...+...+.+.+
T Consensus       154 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  195 (223)
T 2f8y_A          154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR  195 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHH
Confidence             88999999999999999999999999999887776665544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.6e-34  Score=228.68  Aligned_cols=203  Identities=28%  Similarity=0.348  Sum_probs=142.7

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccc-------------------------cccccccCcCCCCHHHHHHHc
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETG-------------------------AVMFDHETVEGAPPLWCAAAA   86 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-------------------------~~~~~~~~~~~~t~l~~A~~~   86 (247)
                      ..|.||||+|+..|+.+++++|++++.. +....                         ....+..+..|.||+|+|+..
T Consensus        57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~  135 (337)
T 4g8k_A           57 EGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  135 (337)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc
Confidence            3589999999999999999999987432 22111                         123445566778888888888


Q ss_pred             CCHHHHHHHHHhCCCCCcc----------CCCCChhHHHHHhcCChHHHHHHHH-CCCCcccCCCCCCCHHHHHHHcCh-
Q psy599           87 GHLPIVQFLVEHGAKVNSK----------TRTNSTPLRAACFDGHFGVVKYLVE-HGADFEVSNRHGHTCLMIACYKGH-  154 (247)
Q Consensus        87 ~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~-  154 (247)
                      |+.++++++++.|++++..          +..|.||||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+. 
T Consensus       136 ~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~  215 (337)
T 4g8k_A          136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  215 (337)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred             CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence            8888888888887766543          3346788888888888888888774 467777777777777766554332 


Q ss_pred             ---HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy599          155 ---YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH-GARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGL  229 (247)
Q Consensus       155 ---~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~-g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~  229 (247)
                         ..++++|+++|++++.++..|.||||+|+..|+.+++++|++. |++++. +..|+||||+|+..|+.+++++|+++
T Consensus       216 ~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence               3466667777777777777777777777777777777777754 566665 66677777777777777777777777


Q ss_pred             Chhhhh
Q psy599          230 NIVSRK  235 (247)
Q Consensus       230 g~~~~~  235 (247)
                      |++.+.
T Consensus       296 GAd~n~  301 (337)
T 4g8k_A          296 GASTDC  301 (337)
T ss_dssp             SCSSTT
T ss_pred             CCCCCC
Confidence            766543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6e-36  Score=230.91  Aligned_cols=184  Identities=21%  Similarity=0.198  Sum_probs=155.9

Q ss_pred             HhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCC-----
Q psy599           27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK-----  101 (247)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~-----  101 (247)
                      +...+..|.||||+|+..|+.+++++|++.         +..++..+..|.||||+|+..|+.+++++|++.+..     
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~  108 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAA---------GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA  108 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHT---------TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhh
Confidence            556678899999999999999999999987         233456677899999999999999999999987754     


Q ss_pred             ------------------------------------------CCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCC
Q psy599          102 ------------------------------------------VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN  139 (247)
Q Consensus       102 ------------------------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  139 (247)
                                                                ++.++..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  188 (282)
T 1oy3_D          109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE  188 (282)
T ss_dssp             -----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             HHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence                                                      56778889999999999999999999999999999988


Q ss_pred             CC-CCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHc
Q psy599          140 RH-GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVV  217 (247)
Q Consensus       140 ~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~  217 (247)
                      .. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|...
T Consensus       189 ~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence            64 99999999999999999999999999999999999999999999999999999999999997 89999999999876


Q ss_pred             CC
Q psy599          218 GH  219 (247)
Q Consensus       218 ~~  219 (247)
                      ..
T Consensus       269 ~~  270 (282)
T 1oy3_D          269 SD  270 (282)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.7e-35  Score=231.21  Aligned_cols=203  Identities=26%  Similarity=0.316  Sum_probs=174.5

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCc-cccccccccccCcCCCCHHHHHHHcCCHHHHHHHHH-hCCCCCccC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADV-EETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVE-HGAKVNSKT  106 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~  106 (247)
                      ..+..|.||||.|+..|+.++++++++.+.... ...........+..|.||||+|+..|+.+++++|++ .|++++.++
T Consensus       120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d  199 (337)
T 4g8k_A          120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD  199 (337)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred             hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence            346789999999999999999999998743221 111122334456679999999999999999999996 599999999


Q ss_pred             CCCChhHHHHHhcCC----hHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCccccCCCCCcHHHH
Q psy599          107 RTNSTPLRAACFDGH----FGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTALHD  181 (247)
Q Consensus       107 ~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~  181 (247)
                      ..|.++++.++..+.    ..++++|+++|++++.++..|.||||.|+..++.++++.|++. +++++.+|..|+||||+
T Consensus       200 ~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~  279 (337)
T 4g8k_A          200 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL  279 (337)
T ss_dssp             TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH
T ss_pred             CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH
Confidence            999999998876654    3588999999999999999999999999999999999999985 88999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhh
Q psy599          182 CAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       182 a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                      |+..|+.+++++|+++|++++    ..+||++|+..++.+++++|+++|++++.
T Consensus       280 A~~~g~~~iv~~Ll~~GAd~n----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          280 AVELKLKKIAELLCKRGASTD----CGDLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHTTCHHHHHHHHTTSCSST----TCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             HHHcCCHHHHHHHHHCCCCCC----CCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            999999999999999999876    45799999999999999999999998764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=6.5e-35  Score=213.00  Aligned_cols=162  Identities=26%  Similarity=0.344  Sum_probs=156.7

Q ss_pred             ccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHH
Q psy599           69 FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI  148 (247)
Q Consensus        69 ~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  148 (247)
                      .+..|..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++++++++..+..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Q psy599          149 ACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI  227 (247)
Q Consensus       149 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll  227 (247)
                      |+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+..++.+++++|+
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987 899999999999999999999999


Q ss_pred             hcC
Q psy599          228 GLN  230 (247)
Q Consensus       228 ~~g  230 (247)
                      +.|
T Consensus       188 ~~~  190 (192)
T 2rfm_A          188 EVR  190 (192)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2.2e-34  Score=205.60  Aligned_cols=162  Identities=24%  Similarity=0.346  Sum_probs=155.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH  154 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  154 (247)
                      .|.||||.|+..|+.+++++|++.+.+++.++..|.||||+|+..|+.+++++|++++++++..+..|.||||.|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhh
Q psy599          155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVS  233 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  233 (247)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+..++.+++++|++++...
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 889999999999999999999999988765


Q ss_pred             hhh
Q psy599          234 RKE  236 (247)
Q Consensus       234 ~~~  236 (247)
                      ...
T Consensus       162 ~~~  164 (167)
T 3v31_A          162 LQN  164 (167)
T ss_dssp             CSS
T ss_pred             HHH
Confidence            543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.8e-34  Score=205.47  Aligned_cols=158  Identities=35%  Similarity=0.515  Sum_probs=151.2

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK  152 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  152 (247)
                      ...+.++++.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++++++++..+..|.||||.|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       153 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+..++.+++++|++.|
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999987 889999999999999999999999987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=5.3e-35  Score=225.10  Aligned_cols=192  Identities=24%  Similarity=0.318  Sum_probs=176.6

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC-CCCccCCCCCh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNST  111 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~  111 (247)
                      .+.+++|.|+..|+.+.++.+++...       ....+..|..|.||||+|+..|+.+++++|++.|. +++..+..|.|
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~-------~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  147 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLL-------DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYS  147 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHH-------HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHH-------hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCC
Confidence            35678899999999999999987521       22356778899999999999999999999999998 99999999999


Q ss_pred             hHHHHH-----hcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          112 PLRAAC-----FDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       112 ~l~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      |+|+|+     ..++.+++++|++.+...+..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus       148 pL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g  227 (276)
T 4hbd_A          148 PIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG  227 (276)
T ss_dssp             HHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence            999999     567899999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHH-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCh
Q psy599          187 SIEILKLLLS-HGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNI  231 (247)
Q Consensus       187 ~~~~i~~Ll~-~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  231 (247)
                      +.+++++|++ .|++++. +..|.|||++|+..|+.+++++|++++-
T Consensus       228 ~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          228 HKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9999999999 8999997 8999999999999999999999998753

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.9e-34  Score=204.90  Aligned_cols=157  Identities=24%  Similarity=0.337  Sum_probs=149.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH  154 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  154 (247)
                      ...|+||.|+..|+.+++++|++.|++++.++..|.||||+|+. |+.+++++|++++++++..+..|.||||.|+..++
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            35689999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC-CC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM-DV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~-~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++. +. +..|.|||++|+..++.+++++|+++|++
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999984 55 88899999999999999999999999985

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.7e-34  Score=206.07  Aligned_cols=168  Identities=21%  Similarity=0.314  Sum_probs=94.9

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHH
Q psy599           35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLR  114 (247)
Q Consensus        35 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  114 (247)
                      .||||.|+..|+.+++++|++.+..        ..+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   74 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDN--------LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS   74 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSG--------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcc--------cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHH
Confidence            4566666666666666666654221        12334455666666666666666666666666666666666666666


Q ss_pred             HHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHH
Q psy599          115 AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL  194 (247)
Q Consensus       115 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~L  194 (247)
                      +|+..++.+++++|++++++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  154 (172)
T 3v30_A           75 LASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI  154 (172)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence            66666666666666666666655555566666666666666666666666666555555566666666666666666666


Q ss_pred             HHcCCCCCC-CCCCCCH
Q psy599          195 LSHGARMDV-DSYGMTP  210 (247)
Q Consensus       195 l~~g~~~~~-~~~g~t~  210 (247)
                      +++|++... +..|.||
T Consensus       155 ~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          155 ENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHSCC-------
T ss_pred             HHHHHHHhcccCCCCCC
Confidence            655555443 3444443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.1e-34  Score=223.24  Aligned_cols=194  Identities=28%  Similarity=0.367  Sum_probs=168.0

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..+..|.||||+|+..|+.+++++|++.         +..++..+..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  138 (299)
T 1s70_B           68 YANVDGLTALHQACIDDNVDMVKFLVEN---------GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE  138 (299)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHC---------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            3477899999999999999999999986         2334566778999999999999999999999999999999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHC-CCCcc--------------------------cCCCCCCCHHHHHHHcChHHHHHHH
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEH-GADFE--------------------------VSNRHGHTCLMIACYKGHYRIVKYL  161 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~--------------------------~~~~~~~t~l~~a~~~~~~~~~~~L  161 (247)
                      |.||+|+|+..+..+++++++.. +.+++                          ..+..|.||||.|+..|+.+++++|
T Consensus       139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  218 (299)
T 1s70_B          139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL  218 (299)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHH
Confidence            99999999999999999877742 33332                          2456799999999999999999999


Q ss_pred             HhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCh
Q psy599          162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNI  231 (247)
Q Consensus       162 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  231 (247)
                      +++|++++.+|..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+......+.+++-....
T Consensus       219 l~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~~~  289 (299)
T 1s70_B          219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL  289 (299)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHHTTS
T ss_pred             HHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999997 8999999999976544444444333443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5e-34  Score=204.67  Aligned_cols=166  Identities=23%  Similarity=0.304  Sum_probs=154.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCC-CCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH  154 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  154 (247)
                      +.+|||.|+..|+.+++++|++.+.. ++.++..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999999887 78889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhh
Q psy599          155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVS  233 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~  233 (247)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+..++.+++++|+++|+..
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 889999999999999999999999999988


Q ss_pred             hhhccchh
Q psy599          234 RKEKIDAL  241 (247)
Q Consensus       234 ~~~~~~~~  241 (247)
                      ..+.....
T Consensus       162 ~~~~~~~~  169 (172)
T 3v30_A          162 FQSNLVPA  169 (172)
T ss_dssp             SCC-----
T ss_pred             hcccCCCC
Confidence            77765543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1e-33  Score=206.64  Aligned_cols=164  Identities=29%  Similarity=0.395  Sum_probs=154.6

Q ss_pred             HHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCcc
Q psy599           26 MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK  105 (247)
Q Consensus        26 ~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  105 (247)
                      .+...+..|.||||.|+..|+.+++++|++.+         ...+..+..|.||||+|+..|+.+++++|++.|++++.+
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~   97 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENF---------DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK   97 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH---------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---------cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            45667899999999999999999999999872         234556778999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q psy599          106 TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEA  185 (247)
Q Consensus       106 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  185 (247)
                      +..|.||||+|+..++.+++++|++++++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcC
Q psy599          186 GSIEILKLLLSHG  198 (247)
Q Consensus       186 ~~~~~i~~Ll~~g  198 (247)
                      |+.+++++|+++|
T Consensus       178 ~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          178 GRQEVIKIFTEVR  190 (192)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhcc
Confidence            9999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=2e-33  Score=200.63  Aligned_cols=161  Identities=24%  Similarity=0.354  Sum_probs=152.0

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTP  112 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  112 (247)
                      .|.||||.|+..|+.+++++|++..         ...+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   72 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE---------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA   72 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS---------SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC---------CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            5889999999999999999999872         2346667889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHH
Q psy599          113 LRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK  192 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~  192 (247)
                      ||+|+..++.+++++|++++++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.++++
T Consensus        73 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  152 (167)
T 3v31_A           73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ  152 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCC
Q psy599          193 LLLSHGARMD  202 (247)
Q Consensus       193 ~Ll~~g~~~~  202 (247)
                      +|++++.+..
T Consensus       153 ~L~~~~~~~~  162 (167)
T 3v31_A          153 VIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999976653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9e-34  Score=219.25  Aligned_cols=172  Identities=20%  Similarity=0.172  Sum_probs=161.1

Q ss_pred             ccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHH
Q psy599           69 FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMI  148 (247)
Q Consensus        69 ~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  148 (247)
                      .+..|..|.||||+|+..|+.+++++|++.|++++.+  +|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            3567789999999999999999999999999998887  48999999999999999999999999999999999999999


Q ss_pred             HHHcChHHHHHHHHhcCCCccccCCCC-CcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy599          149 ACYKGHYRIVKYLLSLNADMNRKSSKG-NTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI  227 (247)
Q Consensus       149 a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  227 (247)
                      |+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|++......|.||||+|+..|+.+++++|+
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  181 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL  181 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence            999999999999999999999999999 7999999999999999999999988753448999999999999999999999


Q ss_pred             hcChhhhhhccchhh
Q psy599          228 GLNIVSRKEKIDALE  242 (247)
Q Consensus       228 ~~g~~~~~~~~~~~~  242 (247)
                      ++|++.+.+...+-+
T Consensus       182 ~~gad~n~~~~~g~t  196 (285)
T 3kea_A          182 DYMTSTNTNNSLLFI  196 (285)
T ss_dssp             HHHHHTCTTCCCBCC
T ss_pred             HcCCCCCcccCCCCC
Confidence            999999888776654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.8e-33  Score=209.45  Aligned_cols=159  Identities=25%  Similarity=0.331  Sum_probs=150.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCc-----ccCCCCCCCHHHH
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF-----EVSNRHGHTCLMI  148 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~~t~l~~  148 (247)
                      .|.||||+|+..|+.+++++|++. |.+++.++..|.||||+|+..|+.+++++|++++.++     +..+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            489999999999999999999998 9999999999999999999999999999999998876     5667789999999


Q ss_pred             HHHcChHHHHHHHHhcCCCccccCC-------------CCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHH
Q psy599          149 ACYKGHYRIVKYLLSLNADMNRKSS-------------KGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA  214 (247)
Q Consensus       149 a~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A  214 (247)
                      |+..|+.+++++|+++|++++.++.             .|.||||+|+..|+.+++++|+++|++++. +..|.||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999988765             799999999999999999999999999997 89999999999


Q ss_pred             HHcCCHHHH----HHHHhcChhh
Q psy599          215 AVVGHQHIV----EYLIGLNIVS  233 (247)
Q Consensus       215 ~~~~~~~~~----~~Ll~~g~~~  233 (247)
                      +..++.+++    ++|++.|++.
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHcCChHHHHHHHHHHHhcCCch
Confidence            999999988    9999999976

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=7.8e-33  Score=197.93  Aligned_cols=159  Identities=33%  Similarity=0.487  Sum_probs=148.3

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      ...+.++|+.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   81 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMAN---------GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM   81 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHC---------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            45577999999999999999999987         223455677899999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ||||+|+..++.+++++|++++++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..|+.++
T Consensus        82 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  161 (169)
T 2y1l_E           82 TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL  161 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q psy599          191 LKLLLSHG  198 (247)
Q Consensus       191 i~~Ll~~g  198 (247)
                      +++|+++|
T Consensus       162 ~~~L~~~G  169 (169)
T 2y1l_E          162 AEILQKLN  169 (169)
T ss_dssp             HHHHHTC-
T ss_pred             HHHHHHcC
Confidence            99999886

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=3.3e-33  Score=198.40  Aligned_cols=159  Identities=25%  Similarity=0.342  Sum_probs=146.6

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      ....||||.|+..|+.+++++|++.         +...+..+..|.||||+|+. |+.+++++|++.|++++.++..|.|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~---------~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t   72 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN---------NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFA   72 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS---------CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC---------CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            3567999999999999999999975         23345667789999999999 9999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCCHHH
Q psy599          112 PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD-MNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      |||+|+..|+.+++++|++++++++..+..|.||||+|+..++.+++++|+++|.+ ++.++..|.||||+|+..|+.++
T Consensus        73 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~  152 (162)
T 1ihb_A           73 VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV  152 (162)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999998 58999999999999999999999


Q ss_pred             HHHHHHcCCC
Q psy599          191 LKLLLSHGAR  200 (247)
Q Consensus       191 i~~Ll~~g~~  200 (247)
                      +++|+++|++
T Consensus       153 ~~~Ll~~GAd  162 (162)
T 1ihb_A          153 VSLMQANGAG  162 (162)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHhCCC
Confidence            9999999985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-32  Score=193.83  Aligned_cols=149  Identities=30%  Similarity=0.382  Sum_probs=143.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHH
Q psy599           77 APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYR  156 (247)
Q Consensus        77 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  156 (247)
                      .++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++++++++..+..|.||||.|+..++.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            578999999999999999999999876 5788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Q psy599          157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL  226 (247)
Q Consensus       157 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~L  226 (247)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+..|+.+++++|
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999987 88999999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=4.6e-33  Score=200.94  Aligned_cols=165  Identities=25%  Similarity=0.348  Sum_probs=155.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG  153 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  153 (247)
                      .+.++|+.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            477899999999999999999998 6678999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       154 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+..++.+++++|++.|++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999997 89999999999999999999999999999


Q ss_pred             hhhhccc
Q psy599          233 SRKEKID  239 (247)
Q Consensus       233 ~~~~~~~  239 (247)
                      .+....+
T Consensus       164 ~~~~~~~  170 (179)
T 3f6q_A          164 LNRIPYK  170 (179)
T ss_dssp             CSCBCCC
T ss_pred             cccCCcc
Confidence            8765543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5.4e-34  Score=214.70  Aligned_cols=175  Identities=22%  Similarity=0.268  Sum_probs=157.8

Q ss_pred             ccCcCCCCHHHHHHHcCCHHHHHHHHHhCC----CCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHH
Q psy599           71 HETVEGAPPLWCAAAAGHLPIVQFLVEHGA----KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL  146 (247)
Q Consensus        71 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  146 (247)
                      ..|..|.||||+|+..|+.+++++|++.+.    +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            356789999999999999999999987764    6899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcChHHHHHHHHhcCCC------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CC-CCCCHHHHHHHcC
Q psy599          147 MIACYKGHYRIVKYLLSLNAD------MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DS-YGMTPLLAAAVVG  218 (247)
Q Consensus       147 ~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~-~g~t~l~~A~~~~  218 (247)
                      |+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|+++|++++. +. .|.||||+|+..+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999875      467788899999999999999999999999999987 55 8999999999999


Q ss_pred             CHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          219 HQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       219 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +.+++++|++.|++.+.+...+.+.++
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~  189 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQ  189 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGG
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHH
Confidence            999999999999999988877776665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=3.3e-33  Score=199.07  Aligned_cols=159  Identities=33%  Similarity=0.410  Sum_probs=147.7

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY  151 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  151 (247)
                      +..+.++|+.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            45678999999999999999999984 56777888889999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       152 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      .++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||+++|+. ++.+++++|++.|
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999987 8999999999877 9999999999998


Q ss_pred             hh
Q psy599          231 IV  232 (247)
Q Consensus       231 ~~  232 (247)
                      +.
T Consensus       164 Al  165 (165)
T 3twr_A          164 AL  165 (165)
T ss_dssp             --
T ss_pred             cC
Confidence            74

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=1.6e-32  Score=198.16  Aligned_cols=164  Identities=23%  Similarity=0.353  Sum_probs=152.5

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      .++.++|+.|+..|+.+++++|++..+.+        .+..+..|.||||+|+..|+.+++++|++.|++++.++..|.|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   74 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTEND--------LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT   74 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSC--------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccc--------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence            45789999999999999999999874443        3556778999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHH
Q psy599          112 PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL  191 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i  191 (247)
                      |||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCC
Q psy599          192 KLLLSHGARMDV  203 (247)
Q Consensus       192 ~~Ll~~g~~~~~  203 (247)
                      ++|+++|++++.
T Consensus       155 ~~L~~~g~~~~~  166 (179)
T 3f6q_A          155 ERAEKMGQNLNR  166 (179)
T ss_dssp             HHHHHTTCCCSC
T ss_pred             HHHHHhhcCccc
Confidence            999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=6.4e-33  Score=197.58  Aligned_cols=160  Identities=33%  Similarity=0.458  Sum_probs=147.0

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +.+|.|+|+.|+..|+.+++++|++..+.        .....+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   76 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSV--------NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL   76 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTT--------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCC--------CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCC
Confidence            45688999999999999999999976332        2345566789999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ||||+|+..++.+++++|++++++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+. ++.++
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i  155 (165)
T 3twr_A           77 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDI  155 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877 89999


Q ss_pred             HHHHHHcCC
Q psy599          191 LKLLLSHGA  199 (247)
Q Consensus       191 i~~Ll~~g~  199 (247)
                      +++|+++|+
T Consensus       156 ~~~L~~~gA  164 (165)
T 3twr_A          156 QDLLRGDAA  164 (165)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHhhccc
Confidence            999999986

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.3e-32  Score=198.44  Aligned_cols=172  Identities=25%  Similarity=0.374  Sum_probs=160.4

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhCC-CCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc
Q psy599           74 VEGAPPLWCAAAAGHLPIVQFLVEHGA-KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK  152 (247)
Q Consensus        74 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  152 (247)
                      ..+.|+||.|+..|+.+.++.|+..+. +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            358899999999999999999998876 9999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHH-hcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCCC-CCCCCCHHHHHHHcCC-----HHHHH
Q psy599          153 GHYRIVKYLL-SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG-ARMDV-DSYGMTPLLAAAVVGH-----QHIVE  224 (247)
Q Consensus       153 ~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g-~~~~~-~~~g~t~l~~A~~~~~-----~~~~~  224 (247)
                      ++.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|+++| ++++. +..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999 556789999999999999999999999999999999 88886 8889999999999998     99999


Q ss_pred             HHHhcChhhhhhccchhhhcc
Q psy599          225 YLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       225 ~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +|++.|++...+..++.+.++
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~  183 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMD  183 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHCCCCCCccCCCCCCHHH
Confidence            999999999888777665543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=6.8e-32  Score=190.47  Aligned_cols=152  Identities=25%  Similarity=0.331  Sum_probs=145.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH  154 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  154 (247)
                      +.|+|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45899999999999999999998 44899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy599          155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGL  229 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~  229 (247)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++ ++++. +..|.||+++|+..++.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999 88886 88999999999999999999999974

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-31  Score=188.85  Aligned_cols=151  Identities=27%  Similarity=0.418  Sum_probs=142.3

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhH
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPL  113 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  113 (247)
                      ..|+|+.|+..|+.+++++|++.+. +.        . .+..|.||||+|+..|+.+++++|++.|++++.++..|.|||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~-~~--------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   71 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA-PF--------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC-CC--------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC-CC--------C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            4689999999999999999999732 11        1 366899999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHH
Q psy599          114 RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL  193 (247)
Q Consensus       114 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~  193 (247)
                      |+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..|+.+++++
T Consensus        72 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  151 (153)
T 1awc_B           72 HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             H
Q psy599          194 L  194 (247)
Q Consensus       194 L  194 (247)
                      |
T Consensus       152 L  152 (153)
T 1awc_B          152 L  152 (153)
T ss_dssp             H
T ss_pred             h
Confidence            7

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.3e-32  Score=207.39  Aligned_cols=171  Identities=21%  Similarity=0.234  Sum_probs=154.2

Q ss_pred             CCCCHHHHHHHcCCHH----HHHHHHHhCCCCCc----cCCCCChhHHHHHhc---CChHHHHHHHHCCCCccc------
Q psy599           75 EGAPPLWCAAAAGHLP----IVQFLVEHGAKVNS----KTRTNSTPLRAACFD---GHFGVVKYLVEHGADFEV------  137 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~------  137 (247)
                      .|.|+||.|+..|+.+    ++++|++.|++++.    ++..|.||||+|+..   |+.+++++|++.+++++.      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3789999999999997    66777789999998    899999999999999   999999999998776553      


Q ss_pred             -----CCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCC-------------CCcHHHHHHHhCCHHHHHHHHH---
Q psy599          138 -----SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-------------GNTALHDCAEAGSIEILKLLLS---  196 (247)
Q Consensus       138 -----~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~i~~Ll~---  196 (247)
                           .+..|.||||+|+..|+.+++++|+++|++++.++..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                 3367999999999999999999999999999998886             9999999999999999999999   


Q ss_pred             cCCCCCC-CCCCCCHHHHHHH--cCCHH-------HHHHHHhcChhh-------hhhccchhhhcc
Q psy599          197 HGARMDV-DSYGMTPLLAAAV--VGHQH-------IVEYLIGLNIVS-------RKEKIDALELLG  245 (247)
Q Consensus       197 ~g~~~~~-~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~~~~~~  245 (247)
                      +|++++. +..|.||||+|+.  .++.+       ++++|++.|++.       ..+..++.+.++
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence            9999997 8899999999999  78888       999999999999       666666665554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=2e-31  Score=188.08  Aligned_cols=154  Identities=26%  Similarity=0.385  Sum_probs=144.3

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhH
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPL  113 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  113 (247)
                      |.|+|+.|+..|+.+++++|++..+.+        .+..+..|.||||+ +..|+.+++++|++.|++++.++..|.|||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   72 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVH--------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCC--------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcC--------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            568999999999999999999873222        35566789999999 999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHH
Q psy599          114 RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL  193 (247)
Q Consensus       114 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~  193 (247)
                      |+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. ++++.++..|.||||+|+..|+.+++++
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~  151 (156)
T 1bd8_A           73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDI  151 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHc
Q psy599          194 LLSH  197 (247)
Q Consensus       194 Ll~~  197 (247)
                      |+++
T Consensus       152 Ll~~  155 (156)
T 1bd8_A          152 LQGH  155 (156)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            9975

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=3.7e-31  Score=203.63  Aligned_cols=165  Identities=28%  Similarity=0.361  Sum_probs=154.0

Q ss_pred             HHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHH-----HcCCHHHHHHHHHhCC
Q psy599           26 MVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA-----AAGHLPIVQFLVEHGA  100 (247)
Q Consensus        26 ~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~-----~~~~~~~~~~Ll~~~~  100 (247)
                      .++..|..|.||||+|+..|+.+++++|++.+..        ..+..+..|.||||+|+     ..++.+++++|++.|.
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~  174 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVC--------KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGN  174 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC--------CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSC
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC--------cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCC
Confidence            3667789999999999999999999999997332        34666788999999999     6688999999999999


Q ss_pred             CCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCccccCCCCCcHH
Q psy599          101 KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLS-LNADMNRKSSKGNTAL  179 (247)
Q Consensus       101 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l  179 (247)
                      ..+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus       175 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL  254 (276)
T 4hbd_A          175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL  254 (276)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHcC
Q psy599          180 HDCAEAGSIEILKLLLSHG  198 (247)
Q Consensus       180 ~~a~~~~~~~~i~~Ll~~g  198 (247)
                      |+|+..|+.+++++|++++
T Consensus       255 ~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          255 MVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999885

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=9.5e-32  Score=206.72  Aligned_cols=181  Identities=22%  Similarity=0.303  Sum_probs=149.5

Q ss_pred             ccCCCchHHHHHHhc---CcHHHHHHHHHhcccCcccc--ccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCc
Q psy599           30 FKFGGATPLIMACRN---GHKEIVEYLVKECKADVEET--GAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNS  104 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~  104 (247)
                      .+..|.||||+|+..   |+.+++++|++.+.......  ........+..|.||||+|+..|+.+++++|++.|++++.
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            367899999999987   99999999999743211000  0111223456899999999999999999999999999999


Q ss_pred             cCC--------------CCChhHHHHHhcCChHHHHHHHH---CCCCcccCCCCCCCHHHHHHHcCh---------HHHH
Q psy599          105 KTR--------------TNSTPLRAACFDGHFGVVKYLVE---HGADFEVSNRHGHTCLMIACYKGH---------YRIV  158 (247)
Q Consensus       105 ~~~--------------~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~  158 (247)
                      ++.              .|.||||+|+..|+.+++++|++   +|++++.++..|.||||+|+..++         .+++
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v  209 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY  209 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence            887              79999999999999999999999   999999999999999999999887         8999


Q ss_pred             HHHHhcCCCcc-------ccCCCCCcHHHHHHHhCCHHHHHHHHHcCC-CCCC-CCCCCCH
Q psy599          159 KYLLSLNADMN-------RKSSKGNTALHDCAEAGSIEILKLLLSHGA-RMDV-DSYGMTP  210 (247)
Q Consensus       159 ~~Ll~~~~~~~-------~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~-~~~~-~~~g~t~  210 (247)
                      ++|+++|++++       .+|..|.||||+|+..|+.+++++|+++|+ ++.. ...+.+|
T Consensus       210 ~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred             HHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            99999999886       489999999999999999999999999999 5554 3334443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=2.7e-32  Score=208.25  Aligned_cols=172  Identities=22%  Similarity=0.247  Sum_probs=151.3

Q ss_pred             CCCchHHHHHH---hcCcHHHHHHHHHhcccCcccc--ccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC
Q psy599           32 FGGATPLIMAC---RNGHKEIVEYLVKECKADVEET--GAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT  106 (247)
Q Consensus        32 ~~g~t~L~~A~---~~g~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  106 (247)
                      ..|.||||+|+   ..|+.+++++|++.+.......  ........+..|.||||+|+..|+.+++++|++.|++++.++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  123 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA  123 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence            66999999999   7799999999999743221100  112334456689999999999999999999999999999998


Q ss_pred             --------------CCCChhHHHHHhcCChHHHHHHHH---CCCCcccCCCCCCCHHHHHHHcCh---------HHHHHH
Q psy599          107 --------------RTNSTPLRAACFDGHFGVVKYLVE---HGADFEVSNRHGHTCLMIACYKGH---------YRIVKY  160 (247)
Q Consensus       107 --------------~~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~  160 (247)
                                    ..|.||||+|+..|+.+++++|++   +|++++.++..|.||||+|+..++         .+++++
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~  203 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL  203 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHH
Confidence                          589999999999999999999999   999999999999999999998777         799999


Q ss_pred             HHhcCCCc-------cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC
Q psy599          161 LLSLNADM-------NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV  203 (247)
Q Consensus       161 Ll~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~  203 (247)
                      |+++|+++       +.+|..|.||||+|+..|+.+++++|+++|++...
T Consensus       204 Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            99999988       67999999999999999999999999999987653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=1.3e-32  Score=216.69  Aligned_cols=196  Identities=18%  Similarity=0.207  Sum_probs=155.9

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccc-cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChh
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDH-ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTP  112 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  112 (247)
                      ..+.+|.|+..+..+++++|++.         +..++. .+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        97 ~~~~~~~a~~~~~~~~~~~l~~~---------g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp  167 (327)
T 1sw6_A           97 NQQQQHVSFDSLLQEVNDAFPNT---------QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC  167 (327)
T ss_dssp             -------CHHHHHHHHHHHCTTS---------CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH
T ss_pred             ccchhHHHHHhhHHHHHHHHHhc---------CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            34556888888888888888865         333455 67889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC---hHHHHHHHHCC-CCcccCCCCCCCHHHHHHH----cChHHHHHHHHhc--------------------
Q psy599          113 LRAACFDGH---FGVVKYLVEHG-ADFEVSNRHGHTCLMIACY----KGHYRIVKYLLSL--------------------  164 (247)
Q Consensus       113 l~~a~~~~~---~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~--------------------  164 (247)
                      ||+|+..|+   .++++.|++.+ .+++.++..|.||||+|+.    .|+.+++++|++.                    
T Consensus       168 Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~  247 (327)
T 1sw6_A          168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK  247 (327)
T ss_dssp             HHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred             HHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcc
Confidence            999999988   67777777775 6788999999999999999    8999999999876                    


Q ss_pred             CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhh
Q psy599          165 NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALEL  243 (247)
Q Consensus       165 ~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  243 (247)
                      |++++.++..|.||||.|+.      +++|++++  ++. +..|+||||+|+..|+.+++++|+++|++.+.+..++.+.
T Consensus       248 g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~--~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          248 ESKPNDKNGERKDSILENLD------LKWIIANM--LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             ------------CHHHHHCS------HHHHHHHT--TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             cCCcccccccCCChhHHHHH------HHHHHHhC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            88899999999999999985      89999984  444 8889999999999999999999999999999998888887


Q ss_pred             ccC
Q psy599          244 LGA  246 (247)
Q Consensus       244 ~~~  246 (247)
                      ++-
T Consensus       320 L~~  322 (327)
T 1sw6_A          320 VDF  322 (327)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=2e-32  Score=215.60  Aligned_cols=165  Identities=21%  Similarity=0.200  Sum_probs=138.5

Q ss_pred             HHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCC---HHHHHHHHHhC-CCCCccCCCCChh
Q psy599           37 PLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGH---LPIVQFLVEHG-AKVNSKTRTNSTP  112 (247)
Q Consensus        37 ~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~---~~~~~~Ll~~~-~~~~~~~~~~~~~  112 (247)
                      |||+|+..|+.+++++|+++         +..++..+..|.||||+|+..|+   .++++.|++.+ .+++.++..|.||
T Consensus       134 pLh~Aa~~g~~~~v~~Ll~~---------Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  204 (327)
T 1sw6_A          134 PLHWLTSIANLELVKHLVKH---------GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI  204 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---------TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHc---------CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCH
Confidence            89999999999999999987         34456788899999999999998   78888888876 6799999999999


Q ss_pred             HHHHHh----cCChHHHHHHHHC--------------------CCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCc
Q psy599          113 LRAACF----DGHFGVVKYLVEH--------------------GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM  168 (247)
Q Consensus       113 l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  168 (247)
                      ||+|+.    .|+.+++++|++.                    +++++.++..|.||||.|+.      +++|+++  ++
T Consensus       205 Lh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~  276 (327)
T 1sw6_A          205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--ML  276 (327)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TT
T ss_pred             HHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CC
Confidence            999999    8999999999986                    88999999999999999985      8889888  57


Q ss_pred             cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcC
Q psy599          169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVG  218 (247)
Q Consensus       169 ~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~  218 (247)
                      +.+|..|+||||+|+..|+.+++++|+++|++++. +..|+||||+|+..|
T Consensus       277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            88899999999999999999999999999999997 899999999998754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=9.4e-32  Score=202.82  Aligned_cols=165  Identities=22%  Similarity=0.275  Sum_probs=122.9

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK  152 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  152 (247)
                      +..|.||||.|+..++.+.++.|+++|.+++.. ..+.||||.|+..|+.+++++|++.+++++..+..|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            346999999999999999999999999999865 6789999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCC-CHHHHH--HHcCCHHHHHHHHh
Q psy599          153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGM-TPLLAA--AVVGHQHIVEYLIG  228 (247)
Q Consensus       153 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~-t~l~~A--~~~~~~~~~~~Ll~  228 (247)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++. +..|. ||+++|  +..|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999986 55555 999999  78899999999999


Q ss_pred             cChhhhhhcc
Q psy599          229 LNIVSRKEKI  238 (247)
Q Consensus       229 ~g~~~~~~~~  238 (247)
                      .|++......
T Consensus       161 ~~a~~~~~~~  170 (239)
T 1ycs_B          161 VQEKMGIMNK  170 (239)
T ss_dssp             HHHHTTTTGG
T ss_pred             hhhccccccc
Confidence            9998876543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.8e-34  Score=216.04  Aligned_cols=187  Identities=26%  Similarity=0.255  Sum_probs=165.4

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..+.+|.||||.|+..|+.+++++|++.         +...+..+..|.||||+|+..|+.+++++|++.|++++.++..
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~   86 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKE---------MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH   86 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHH---------SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhc---------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            4466788999999999999999999987         2234567788999999999999999999999999999999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCC-CCCCCHHHHH--HHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHh
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIA--CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEA  185 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  185 (247)
                      |.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..++.+++++|++.|++++.++..+.||++.++..
T Consensus        87 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A           87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhc
Confidence            9999999999999999999999999999886 5999999999  999999999999999999999999999998865554


Q ss_pred             CCHHHHHHHHHcCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHH
Q psy599          186 GSIEILKLLLSHGARMDV---DSYGMTPLLAAAVVGHQHIVEYLI  227 (247)
Q Consensus       186 ~~~~~i~~Ll~~g~~~~~---~~~g~t~l~~A~~~~~~~~~~~Ll  227 (247)
                      +   ..++|++.|++++.   +..|.|||++|+..|+.++++..+
T Consensus       167 ~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          167 F---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             S---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             c---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            3   33678889998543   788999999999999999987644

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=6.3e-32  Score=203.75  Aligned_cols=178  Identities=19%  Similarity=0.203  Sum_probs=135.1

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      ..|.||||.|+..|+.+.++.|++++ .++        + .+..+.|+||.|+..|+.+++++|++.|++++.++..|.|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g-~~~--------~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t   72 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHG-MRV--------K-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGIT   72 (239)
T ss_dssp             --------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCC
T ss_pred             ccccccCchhhhhhhHHHHHHHhccC-CCc--------c-cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            56999999999999999999999872 222        1 1246899999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCC-cHHHHH--HHhCCH
Q psy599          112 PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN-TALHDC--AEAGSI  188 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a--~~~~~~  188 (247)
                      |||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..+. ||||+|  +..|+.
T Consensus        73 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~  152 (239)
T 1ycs_B           73 ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT  152 (239)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccH
Confidence            99999999999999999999999999999999999999999999999999999999999988877 999999  788999


Q ss_pred             HHHHHHHHcCCCCCC----------CCCCCCHHHHHHHcCC
Q psy599          189 EILKLLLSHGARMDV----------DSYGMTPLLAAAVVGH  219 (247)
Q Consensus       189 ~~i~~Ll~~g~~~~~----------~~~g~t~l~~A~~~~~  219 (247)
                      +++++|+++|++++.          +..+.++.+++...|.
T Consensus       153 ~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          153 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999999999988764          4457888888887775

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=2.7e-30  Score=178.15  Aligned_cols=130  Identities=28%  Similarity=0.407  Sum_probs=74.2

Q ss_pred             CCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCC-CCcHH
Q psy599          101 KVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSK-GNTAL  179 (247)
Q Consensus       101 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~l  179 (247)
                      +++.++..|.||||+|+..|+.+++++|++++++++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            444555555555555555555555555555555555555555555555555 5555555555555555555555 55555


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCh
Q psy599          180 HDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNI  231 (247)
Q Consensus       180 ~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~  231 (247)
                      |+|+..|+.+++++|+++|++++. +..|.|||++|+..++.+++++|+++|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            555555555555555555555554 5555555555555555555555555554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=1.1e-29  Score=174.94  Aligned_cols=132  Identities=21%  Similarity=0.218  Sum_probs=127.0

Q ss_pred             cccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCC-CCCHH
Q psy599           68 MFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH-GHTCL  146 (247)
Q Consensus        68 ~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~t~l  146 (247)
                      .++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+. ++.+++++|++++++++..+.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            346677889999999999999999999999999999999999999999999 9999999999999999999999 99999


Q ss_pred             HHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q psy599          147 MIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR  200 (247)
Q Consensus       147 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~  200 (247)
                      |+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999999875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.5e-29  Score=178.49  Aligned_cols=143  Identities=20%  Similarity=0.199  Sum_probs=117.3

Q ss_pred             ccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCC-HHHHH
Q psy599           71 HETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT-CLMIA  149 (247)
Q Consensus        71 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t-~l~~a  149 (247)
                      ..+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            34567899999999999999999999999999999999999999985 89999999999999999999999998 99999


Q ss_pred             HHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHH
Q psy599          150 CYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAA  214 (247)
Q Consensus       150 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A  214 (247)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            999999999999999999999999999999999999999999999999999987 77888887643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=1.6e-29  Score=183.02  Aligned_cols=156  Identities=19%  Similarity=0.189  Sum_probs=140.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCCccC-CCCChhHHHHHhcCCh----HHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT-RTNSTPLRAACFDGHF----GVVKYLVEHGADFEVSNRHGHTCLMIAC  150 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  150 (247)
                      +.++|+.|++.|+.+.++.++..+.  +..+ ..|.||||+|+..++.    +++++|+++|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            5678999999999999999998875  4444 6799999999999975    5999999999999999999999999999


Q ss_pred             HcCh------HHHHHHHHhcCCCccccCCCCC-cHHHHHHHhC-----CHHHHHHHHH-cCCCCCC-CCCCCCHHHHHHH
Q psy599          151 YKGH------YRIVKYLLSLNADMNRKSSKGN-TALHDCAEAG-----SIEILKLLLS-HGARMDV-DSYGMTPLLAAAV  216 (247)
Q Consensus       151 ~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~-----~~~~i~~Ll~-~g~~~~~-~~~g~t~l~~A~~  216 (247)
                      ..++      .+++++|+++|++++.+|..|. ||||+|+..+     ..+++++|++ +|++++. +..|.||||+|+.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            9886      6889999999999999999999 9999999944     4579999999 9999997 9999999999999


Q ss_pred             cCCHHHHHHHHhcChhh
Q psy599          217 VGHQHIVEYLIGLNIVS  233 (247)
Q Consensus       217 ~~~~~~~~~Ll~~g~~~  233 (247)
                      .++.+++++|+++.-..
T Consensus       164 ~~~~~~v~~L~~~~~~~  180 (186)
T 3t8k_A          164 CQKPIALKMMEDYIKKY  180 (186)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            99999999999875433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.1e-31  Score=197.80  Aligned_cols=173  Identities=20%  Similarity=0.167  Sum_probs=149.6

Q ss_pred             cccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy599           70 DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA  149 (247)
Q Consensus        70 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  149 (247)
                      ...+..+.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcChHHHHHHHHhcCCCccccC-CCCCcHHHHH--HHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Q psy599          150 CYKGHYRIVKYLLSLNADMNRKS-SKGNTALHDC--AEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY  225 (247)
Q Consensus       150 ~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~  225 (247)
                      +..|+.+++++|++.|++++..+ ..|.||||+|  +..|+.+++++|+++|++++. +..|.||++.++....   .++
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~  171 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DEL  171 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBC
T ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---ccc
Confidence            99999999999999999999886 6899999999  999999999999999999887 6777888876554443   357


Q ss_pred             HHhcChh--hhhhccchhhhcc
Q psy599          226 LIGLNIV--SRKEKIDALELLG  245 (247)
Q Consensus       226 Ll~~g~~--~~~~~~~~~~~~~  245 (247)
                      |++.|++  ...++.++.+.++
T Consensus       172 ll~~ga~~~~~~~d~~G~TpL~  193 (229)
T 2vge_A          172 SFREGESVTVLRRDGPEETDWW  193 (229)
T ss_dssp             CBCTTCEEEEEESSCTTCSSEE
T ss_pred             CccccccccccccCCCcccHHH
Confidence            7888887  4455555555543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=6.7e-28  Score=163.65  Aligned_cols=124  Identities=46%  Similarity=0.720  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChH
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY  155 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  155 (247)
                      |.||||+|+..|+.+++++|++.|++++.++..|.+|||+|+..++.+++++|++++.+++..+..|.||+|.|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            55666666666666666666666666666666666666666666666666666666666555555566666666666666


Q ss_pred             HHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q psy599          156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA  199 (247)
Q Consensus       156 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~  199 (247)
                      +++++|+++|++++.++..|.|||++|+..|+.+++++|+++|+
T Consensus        82 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           82 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            66666665555555555555556665555555555555555554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=5.2e-28  Score=164.21  Aligned_cols=125  Identities=42%  Similarity=0.630  Sum_probs=121.0

Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      +|.||||+|+..|+.+++++|++++.+++..+..|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      .+++++|+++|++++. +..|.||+++|+..++.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999987 88999999999999999999999999975

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=9.3e-29  Score=174.37  Aligned_cols=140  Identities=27%  Similarity=0.378  Sum_probs=119.6

Q ss_pred             CccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCc-HHHH
Q psy599          103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNT-ALHD  181 (247)
Q Consensus       103 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t-~l~~  181 (247)
                      +..+..|.+|||+|+..|+.+++++|++++++++..+..|.||||+|+ .++.+++++|+++|++++.++..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            445678899999999999999999999999999999999999999985 99999999999999999999999999 9999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhh
Q psy599          182 CAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALEL  243 (247)
Q Consensus       182 a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  243 (247)
                      |+..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|++...+...+.+.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            9999999999999999999997 8899999999999999999999999999998887766544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=4.3e-28  Score=167.03  Aligned_cols=122  Identities=34%  Similarity=0.449  Sum_probs=66.7

Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      +.+|+|+|+..|+.+++++|++++++++..+..|.||||.|+..++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~   93 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL   93 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          189 EILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       189 ~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      +++++|+++|++++. +..|.|||++|+..++.+++++|++.|
T Consensus        94 ~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           94 EIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            555555555555554 455555555555555555555555544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=5.7e-29  Score=180.07  Aligned_cols=158  Identities=18%  Similarity=0.139  Sum_probs=140.2

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccC-cCCCCHHHHHHHcCCH----HHHHHHHHhCCCCCccCCC
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHET-VEGAPPLWCAAAAGHL----PIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~t~l~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ++++|+.|+..|+.+.++.++....           +..+ ..|.||||+|+..++.    +++++|+++|++++.++..
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~-----------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~   74 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY-----------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKE   74 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS-----------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTT
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc-----------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCC
Confidence            4688999999999999999987521           1222 5799999999999975    5999999999999999999


Q ss_pred             CChhHHHHHhcCC------hHHHHHHHHCCCCcccCCCCCC-CHHHHHHHc-----ChHHHHHHHHh-cCCCccccCCCC
Q psy599          109 NSTPLRAACFDGH------FGVVKYLVEHGADFEVSNRHGH-TCLMIACYK-----GHYRIVKYLLS-LNADMNRKSSKG  175 (247)
Q Consensus       109 ~~~~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~-----~~~~~~~~Ll~-~~~~~~~~~~~~  175 (247)
                      |.||||+|+..++      .+++++|+++|++++.+|..|. ||||+|+..     +..+++++|++ +|++++.+|..|
T Consensus        75 g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G  154 (186)
T 3t8k_A           75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG  154 (186)
T ss_dssp             CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCC
Confidence            9999999999887      5789999999999999999999 999999984     45679999999 999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy599          176 NTALHDCAEAGSIEILKLLLSHGARMD  202 (247)
Q Consensus       176 ~t~l~~a~~~~~~~~i~~Ll~~g~~~~  202 (247)
                      .||||+|+..|+.+++++|.++..+.+
T Consensus       155 ~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             CCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999998754443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=5.5e-28  Score=166.51  Aligned_cols=126  Identities=32%  Similarity=0.428  Sum_probs=121.1

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK  152 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  152 (247)
                      ...+.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++++++++..+..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q psy599          153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG  198 (247)
Q Consensus       153 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g  198 (247)
                      ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=8e-31  Score=208.92  Aligned_cols=201  Identities=18%  Similarity=0.146  Sum_probs=161.2

Q ss_pred             HHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy599           21 HEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA  100 (247)
Q Consensus        21 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~  100 (247)
                      .+..+.+...+.++.||||.|+..|+.+++++|++.+....      .....+..+.||||+|+..|+.+++++|+++|+
T Consensus        79 ~~~~~~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~------~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~ga  152 (376)
T 2aja_A           79 KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE------IVKVIQAENYQAFRLAAENGHLHVLNRLCELAP  152 (376)
T ss_dssp             TTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS------SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             HHHHHHHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHH------HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            34455666677788899999999999999999998733110      111233457789999999999999999999997


Q ss_pred             CC---CccCCCCChhHHHHHhcCChHHHHHHHHCCCCccc--CCCCCCCHHHHHH-HcChHHHHHHHHhcCCCccccCCC
Q psy599          101 KV---NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV--SNRHGHTCLMIAC-YKGHYRIVKYLLSLNADMNRKSSK  174 (247)
Q Consensus       101 ~~---~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~  174 (247)
                      ++   +..+.. .||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|++.|.       .
T Consensus       153 d~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~  224 (376)
T 2aja_A          153 TEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------M  224 (376)
T ss_dssp             TTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------H
T ss_pred             CccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------c
Confidence            52   333333 8999999999999999999999999876  7888999999999 9999999999998763       2


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCC----------------------------------------------------
Q psy599          175 GNTALHDCAEAGSIEILKLLLSHGARMD----------------------------------------------------  202 (247)
Q Consensus       175 ~~t~l~~a~~~~~~~~i~~Ll~~g~~~~----------------------------------------------------  202 (247)
                      +.|||+.|+..|+.+++++|+++|++++                                                    
T Consensus       225 ~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~  304 (376)
T 2aja_A          225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP  304 (376)
T ss_dssp             HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred             cchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence            7899999999999999999998765421                                                    


Q ss_pred             ---------C-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhh
Q psy599          203 ---------V-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRK  235 (247)
Q Consensus       203 ---------~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~  235 (247)
                               . ...+.||+++|+..|+.+++++|++.|.....
T Consensus       305 ~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~~~  347 (376)
T 2aja_A          305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL  347 (376)
T ss_dssp             TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHHHHS
T ss_pred             hhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHHHHH
Confidence                     0 12345789999999999999999998765543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=4.6e-28  Score=167.08  Aligned_cols=127  Identities=29%  Similarity=0.456  Sum_probs=76.6

Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA  183 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  183 (247)
                      .++..|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          184 EAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       184 ~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      ..|+.+++++|+++|++++. +..|.||+++|+..+..+++++|.+.+
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            66666666666666666654 556666666666666666655555443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.7e-29  Score=201.32  Aligned_cols=180  Identities=15%  Similarity=0.117  Sum_probs=150.7

Q ss_pred             chHHHHHHh-cCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCC---CccCCCCC
Q psy599           35 ATPLIMACR-NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKV---NSKTRTNS  110 (247)
Q Consensus        35 ~t~L~~A~~-~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~~~  110 (247)
                      .++++.|.. .++.++++++++.                +..+.||||+|+..|+.+++++|++.|...   +..+..|.
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~----------------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~  129 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKK----------------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY  129 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHH----------------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHc----------------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCC
Confidence            356777776 5778888888875                123569999999999999999999998732   23345678


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCc---ccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccc--cCCCCCcHHHHHH-H
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADF---EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR--KSSKGNTALHDCA-E  184 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~t~l~~a~-~  184 (247)
                      +|||+|+..|+.+++++|+++|+++   +..+.. .||||.|+..|+.+++++|+++|++++.  .+..|.||||+|+ .
T Consensus       130 tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~  208 (376)
T 2aja_A          130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  208 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHH
Confidence            9999999999999999999999752   333333 8999999999999999999999999877  8888999999999 9


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhc
Q psy599          185 AGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEK  237 (247)
Q Consensus       185 ~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~  237 (247)
                      .|+.+++++|+++|+.      |.||+++|+..|+.+++++|++.|++...++
T Consensus       209 ~G~~eiv~~Ll~~ga~------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~  255 (376)
T 2aja_A          209 RGHHNVINFLLDCPVM------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMH  255 (376)
T ss_dssp             TCCHHHHHHHTTSHHH------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCc------cchHHHHHHHCCCHHHHHHHHhcCccccccc
Confidence            9999999999998743      7899999999999999999999999876553

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=4.8e-27  Score=169.94  Aligned_cols=140  Identities=26%  Similarity=0.302  Sum_probs=130.8

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCC-CCCCCHHHHHHH
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIACY  151 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~  151 (247)
                      +..|.||||+|+..|+.++++.|++ |.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3478899999999999999999999 99999999999999999999999999999999999999888 889999999999


Q ss_pred             cChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy599          152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGL  229 (247)
Q Consensus       152 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  229 (247)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++                ...+.+|+++|+..|..+++++|.++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~----------------~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILK----------------TTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH----------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc----------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999999999999999999987432                24578999999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=7.9e-27  Score=176.32  Aligned_cols=142  Identities=25%  Similarity=0.290  Sum_probs=132.2

Q ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCC-CCCCCHHHHHHHc
Q psy599           74 VEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN-RHGHTCLMIACYK  152 (247)
Q Consensus        74 ~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~  152 (247)
                      ..|.||||+|+..|+.++++.|++ |.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            468899999999999999999999 99999999999999999999999999999999999999888 7899999999999


Q ss_pred             ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       153 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      |+.+++++|+++|++++.+|..|.||||+|+..+.                ...+.|||++|+..|+.+++++|++.+..
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREILK----------------TTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT----------------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh----------------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            99999999999999999999999999999986322                35689999999999999999999987544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=8.5e-27  Score=160.72  Aligned_cols=129  Identities=29%  Similarity=0.392  Sum_probs=119.8

Q ss_pred             ccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy599           71 HETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC  150 (247)
Q Consensus        71 ~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  150 (247)
                      ..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++++++++..+..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q psy599          151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA  199 (247)
Q Consensus       151 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~  199 (247)
                      ..++.+++++|+++|++++.+|..|.||+++|+..+..+++++|.+.+.
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999888877654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=2.6e-26  Score=178.34  Aligned_cols=138  Identities=20%  Similarity=0.184  Sum_probs=97.4

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCCc------cCCCCChhHHHHHhc---CChHHHHHHHHCCCCcccCCCCCCCHHH
Q psy599           77 APPLWCAAAAGHLPIVQFLVEHGAKVNS------KTRTNSTPLRAACFD---GHFGVVKYLVEHGADFEVSNRHGHTCLM  147 (247)
Q Consensus        77 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~  147 (247)
                      .++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++|++++..+..|.||||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            3557777777777777777777777766      466777777777775   6777777777777777777777777777


Q ss_pred             HHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCC
Q psy599          148 IACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGH  219 (247)
Q Consensus       148 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~~~~g~t~l~~A~~~~~  219 (247)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++     .|.||||+|+..|+
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC-------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCC
Confidence            77777777777777777777777777777777777777777777777777654     46677777776664

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.2e-25  Score=152.06  Aligned_cols=107  Identities=29%  Similarity=0.340  Sum_probs=61.4

Q ss_pred             CCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Q psy599          108 TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       108 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      .|.+|||+|+..|+.+++++|++.+.+++..+..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~   85 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   85 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555566666666556


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHH
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAA  214 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A  214 (247)
                      .+++++|+++|++++. +..|.||+++|
T Consensus        86 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           86 VSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            6666666655555554 55555666555

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=5.1e-26  Score=169.52  Aligned_cols=126  Identities=27%  Similarity=0.404  Sum_probs=57.2

Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCC
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-NADMNRKSSKGNTALHDCAEAGS  187 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~  187 (247)
                      |.||||+|+..|+.+++++|++.+++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~  152 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY  152 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTC
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCC
Confidence            44444444444444444444444444444444444444444444444444444444 44444444445555555555555


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      .+++++|+++|++++. +..|.|||++|+..+..++++.|++.|++..
T Consensus       153 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          153 ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            5555555555554443 4444555555555555555555554444443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.4e-25  Score=151.75  Aligned_cols=114  Identities=30%  Similarity=0.383  Sum_probs=107.1

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHc
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYK  152 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~  152 (247)
                      +..|.|+||+|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++++++++.++..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          153 GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       153 ~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      ++.+++++|+++|++++.++..|.||+|+|...+
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHH
Confidence            9999999999999999999999999999995443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=2.1e-25  Score=161.32  Aligned_cols=140  Identities=26%  Similarity=0.272  Sum_probs=126.0

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC-CCC
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT-RTN  109 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~  109 (247)
                      +..|.||||.|+..|+.+++++|++  +.+        .+..+..|.||||+|+..|+.+++++|++.|++++.++ ..|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~--------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g  110 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRD--------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG  110 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSC--------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCC--------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC
Confidence            3468899999999999999999997  222        35567789999999999999999999999999999988 889


Q ss_pred             ChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHH
Q psy599          110 STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE  189 (247)
Q Consensus       110 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  189 (247)
                      .||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..++.                 ..+.+||++|+..|..+
T Consensus       111 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~  173 (183)
T 3deo_A          111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEK  173 (183)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHH
T ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHH
Confidence            9999999999999999999999999999999999999999875433                 34679999999999999


Q ss_pred             HHHHHHHc
Q psy599          190 ILKLLLSH  197 (247)
Q Consensus       190 ~i~~Ll~~  197 (247)
                      ++++|.++
T Consensus       174 i~~~L~~~  181 (183)
T 3deo_A          174 VINVLEGQ  181 (183)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99999876

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=8.6e-26  Score=168.27  Aligned_cols=132  Identities=26%  Similarity=0.330  Sum_probs=117.5

Q ss_pred             cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHC-CCCcccCCCCCCCHHHHHH
Q psy599           72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGHTCLMIAC  150 (247)
Q Consensus        72 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~  150 (247)
                      .+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ +++++..+..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            455789999999999999999999999999999999999999999999999999999998 9999999999999999999


Q ss_pred             HcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC
Q psy599          151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV  203 (247)
Q Consensus       151 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~  203 (247)
                      ..|+.+++++|+++|++++.++..|.|||++|+..+..++++.|++.|+....
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            99999999999999999999999999999999999999999999999988764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.6e-25  Score=169.16  Aligned_cols=142  Identities=25%  Similarity=0.268  Sum_probs=126.8

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccC-CCCC
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKT-RTNS  110 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~  110 (247)
                      ..|.||||.|+..|+.+++++|++  +.+        .+..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~--------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~  112 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRD--------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL  112 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCC--------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCC--------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCC
Confidence            458899999999999999999997  223        35567789999999999999999999999999999988 8899


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..++                 ...+.|||++|+..|+.++
T Consensus       113 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~i  175 (244)
T 3ui2_A          113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKV  175 (244)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHH
Confidence            99999999999999999999999999999999999999985221                 2457899999999999999


Q ss_pred             HHHHHHcCCC
Q psy599          191 LKLLLSHGAR  200 (247)
Q Consensus       191 i~~Ll~~g~~  200 (247)
                      +++|++++.+
T Consensus       176 v~~L~~~~~~  185 (244)
T 3ui2_A          176 INVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHEE
T ss_pred             HHHHHHhccc
Confidence            9999987443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=168.80  Aligned_cols=146  Identities=21%  Similarity=0.127  Sum_probs=121.1

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCCccCCCCC
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA---GHLPIVQFLVEHGAKVNSKTRTNS  110 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~  110 (247)
                      +.++|+.|+..|+.+.++.|++.. .+++...  .....+..|.||||+|+..   ++.+++++|++.|++++.++..|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g-~d~~~~~--~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPL--PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCE--ECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC-CcccccC--CCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            457799999999999999999763 2222110  0011467899999999997   899999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|.+      .|.||||+|+..|..
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999998775      478999999988753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=1.9e-23  Score=160.51  Aligned_cols=163  Identities=25%  Similarity=0.270  Sum_probs=138.6

Q ss_pred             cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCC-----Ccc--------------------------CCCCChhHHHHHhcC
Q psy599           72 ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKV-----NSK--------------------------TRTNSTPLRAACFDG  120 (247)
Q Consensus        72 ~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~-----~~~--------------------------~~~~~~~l~~a~~~~  120 (247)
                      .|.++.+.++.+...|+..+.+++.......     ...                          .....++|+.|+..+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            5667888999999999987776664322111     000                          001235789999999


Q ss_pred             ChHHHHHHHHCCCCc------ccCCCCCCCHHHHHHHc---ChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHH
Q psy599          121 HFGVVKYLVEHGADF------EVSNRHGHTCLMIACYK---GHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEIL  191 (247)
Q Consensus       121 ~~~~~~~Ll~~~~~~------~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i  191 (247)
                      +.+.+..+++.|.++      +..+..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v  221 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL  221 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999884      44578899999999999   899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhh
Q psy599          192 KLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSR  234 (247)
Q Consensus       192 ~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~  234 (247)
                      ++|+++|++++. +..|.||||+|+..|+.+++++|++.|+...
T Consensus       222 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999997 8999999999999999999999999998643

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=5.8e-24  Score=168.83  Aligned_cols=144  Identities=24%  Similarity=0.276  Sum_probs=112.8

Q ss_pred             CCCCHHHHHHHc-CCHHHHHHHHHhCCCCCccC--CCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy599           75 EGAPPLWCAAAA-GHLPIVQFLVEHGAKVNSKT--RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACY  151 (247)
Q Consensus        75 ~~~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  151 (247)
                      .+.|+||.|+.. ++.++++.|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            345789999999 99999999999999998887  788999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCC---C-CCCCCCHHHHHHHcC
Q psy599          152 KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD---V-DSYGMTPLLAAAVVG  218 (247)
Q Consensus       152 ~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~---~-~~~g~t~l~~A~~~~  218 (247)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+..+....   . +..+.|+++++....
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998775432   1 455677777666543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.3e-23  Score=133.64  Aligned_cols=90  Identities=42%  Similarity=0.621  Sum_probs=62.5

Q ss_pred             CCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCH
Q psy599          142 GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQ  220 (247)
Q Consensus       142 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~  220 (247)
                      |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56677777777777777777777777766666777777777777777777777777776665 66677777777777777


Q ss_pred             HHHHHHHhcCh
Q psy599          221 HIVEYLIGLNI  231 (247)
Q Consensus       221 ~~~~~Ll~~g~  231 (247)
                      +++++|++.|+
T Consensus        82 ~~~~~Ll~~ga   92 (93)
T 1n0q_A           82 EVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            77777776665

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=4.2e-23  Score=158.59  Aligned_cols=172  Identities=16%  Similarity=0.193  Sum_probs=139.3

Q ss_pred             ccCCCchHHHHHHhcCcHHHHHHHHHhcccC----cccccc-----c-----c----ccc----cCcCCCCHHHHHHHcC
Q psy599           30 FKFGGATPLIMACRNGHKEIVEYLVKECKAD----VEETGA-----V-----M----FDH----ETVEGAPPLWCAAAAG   87 (247)
Q Consensus        30 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~----~~~~~~-----~-----~----~~~----~~~~~~t~l~~A~~~~   87 (247)
                      .|.-+.+.++.+...|+....+++-...+..    +.....     .     +    +..    ......++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            3555777899998889877766654322111    000000     0     0    000    0112245799999999


Q ss_pred             CHHHHHHHHHhCCCCC------ccCCCCChhHHHHHhc---CChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHH
Q psy599           88 HLPIVQFLVEHGAKVN------SKTRTNSTPLRAACFD---GHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV  158 (247)
Q Consensus        88 ~~~~~~~Ll~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  158 (247)
                      +.+.++.++..|.+++      ..+..|.||||+|+..   ++.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v  221 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL  221 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999998844      4478899999999999   899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC
Q psy599          159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARM  201 (247)
Q Consensus       159 ~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~  201 (247)
                      ++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+..
T Consensus       222 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=5.5e-23  Score=163.23  Aligned_cols=126  Identities=25%  Similarity=0.276  Sum_probs=119.0

Q ss_pred             CCCChhHHHHHhc-CChHHHHHHHHCCCCcccCC--CCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy599          107 RTNSTPLRAACFD-GHFGVVKYLVEHGADFEVSN--RHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA  183 (247)
Q Consensus       107 ~~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  183 (247)
                      ..+.++||.|+.. ++.++++.|+++|++++..+  ..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456899999999 99999999999999999988  88999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          184 EAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       184 ~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      ..|+.+++++|+++|++++. +..|.|||++|+..++.+++++|++.|..
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999997 88999999999999999999999987643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=6.8e-23  Score=131.43  Aligned_cols=92  Identities=45%  Similarity=0.681  Sum_probs=65.2

Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCH
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI  188 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  188 (247)
                      |.||||+|+..|+.+++++|++++++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56677777777777777777777777776677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCC
Q psy599          189 EILKLLLSHGAR  200 (247)
Q Consensus       189 ~~i~~Ll~~g~~  200 (247)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            777777777653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=1.3e-22  Score=135.44  Aligned_cols=98  Identities=39%  Similarity=0.565  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH  154 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  154 (247)
                      .|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++++++++.++..|.||||+|+..++
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~   87 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH   87 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCC
Confidence            33334444444344444443333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHhcCCCccccC
Q psy599          155 YRIVKYLLSLNADMNRKS  172 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~~~~  172 (247)
                      .+++++|+++|++++.++
T Consensus        88 ~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           88 HEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             HHHHHHHHTTSSSHHHHS
T ss_pred             HHHHHHHHHcCCCCCcCC
Confidence            333333333333333333

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=2.1e-22  Score=134.33  Aligned_cols=108  Identities=36%  Similarity=0.472  Sum_probs=100.8

Q ss_pred             ccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q psy599          104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCA  183 (247)
Q Consensus       104 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  183 (247)
                      .++..|.||||+|+..++.+++++|++++++++..+..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCC-CCCCCCHH
Q psy599          184 EAGSIEILKLLLSHGARMDV-DSYGMTPL  211 (247)
Q Consensus       184 ~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l  211 (247)
                      ..|+.+++++|+++|++++. +..|.+|-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999987 77777763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=1.2e-19  Score=119.82  Aligned_cols=89  Identities=30%  Similarity=0.425  Sum_probs=56.8

Q ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHH
Q psy599          138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAV  216 (247)
Q Consensus       138 ~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~  216 (247)
                      .+..|.|+||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++. +..|.|||++|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            445566666666666666666666666666666666666666666666666666666666666654 5566666666666


Q ss_pred             cCCHHHHHHH
Q psy599          217 VGHQHIVEYL  226 (247)
Q Consensus       217 ~~~~~~~~~L  226 (247)
                      .++.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            6666666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=3.1e-19  Score=117.88  Aligned_cols=88  Identities=28%  Similarity=0.423  Sum_probs=43.6

Q ss_pred             CCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Q psy599          107 RTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       107 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  186 (247)
                      ..|.++||+|+..|+.+++++|++++++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  101 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG  101 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC
Confidence            34444444444444444444444444444444444455555555555555555555555555445555555555555555


Q ss_pred             CHHHHHHH
Q psy599          187 SIEILKLL  194 (247)
Q Consensus       187 ~~~~i~~L  194 (247)
                      +.+++++|
T Consensus       102 ~~~~~~~L  109 (110)
T 2zgd_A          102 NEDLAEIL  109 (110)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            55554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-34
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-32
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-30
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-28
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-29
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-29
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-28
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-28
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-27
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-24
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-22
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-22
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-21
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-21
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-20
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-15
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-14
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	7e-14
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-11
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-13
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-12
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-10
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-07
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	2e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	4e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-34
 Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 43/226 (19%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
           TPL +A   GH  IV+ L+ +  A    +         V+   PL  AA AGH  + ++L
Sbjct: 2   TPLHVASFMGHLPIVKNLL-QRGASPNVS--------NVKVETPLHMAARAGHTEVAKYL 52

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH------------------------ 131
           +++ AKVN+K + + TPL  A   GH  +VK L+E+                        
Sbjct: 53  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 132 ---------GADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDC 182
                     A      + G T L +A   G  R+ + LL  +A  N     G T LH  
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 172

Query: 183 AEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
               +++I+KLLL  G         G TPL  AA      +   L+
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 218

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 9e-32
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 33/243 (13%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETG-------------------------AVM 68
           G TPL +A  + + +IV+ L                                        
Sbjct: 165 GLTPLHVAVHHNNLDIVKLL-LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 223

Query: 69  FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYL 128
            + E+V+G  PL  AA  GH  +V  L+   A  N   ++  TPL     +GH  V   L
Sbjct: 224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 129 VEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
           ++HG   + + R G+T L +A + G+ ++VK+LL   AD+N K+  G + LH  A+ G  
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 189 EILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLIGLN------IVSRKEKIDAL 241
           +I+ LLL +GA  + V S G TPL  A  +G+  + + L  +       +VS K ++   
Sbjct: 344 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 403

Query: 242 ELL 244
           E +
Sbjct: 404 ETV 406

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 5e-30
 Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 43/226 (19%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             TPL MA R GH E+ +YL+ + KA V        + +  +   PL CAA  GH  +V+
Sbjct: 33  VETPLHMAARAGHTEVAKYLL-QNKAKV--------NAKAKDDQTPLHCAARIGHTNMVK 83

Query: 94  FLVEH---------------------------------GAKVNSKTRTNSTPLRAACFDG 120
            L+E+                                  A     T+   TPL  A   G
Sbjct: 84  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 121 HFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
              V + L+E  A    + ++G T L +A +  +  IVK LL      +  +  G T LH
Sbjct: 144 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 203

Query: 181 DCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEY 225
             A+   +E+ + LL +G   +     G+TPL  AA  GH  +V  
Sbjct: 204 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 249

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 9e-30
 Identities = 59/228 (25%), Positives = 86/228 (37%), Gaps = 43/228 (18%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +A + G   + E L+ E  A          +     G  PL  A    +L IV+
Sbjct: 132 GFTPLHVAAKYGKVRVAELLL-ERDAHP--------NAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  G   +S      TPL  A       V + L+++G      +  G T L +A  +G
Sbjct: 183 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 242

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD----------- 202
           H  +V  LLS  A+ N  +  G T LH  A+ G + +  +L+ HG  +D           
Sbjct: 243 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 302

Query: 203 -----------------------VDSYGMTPLLAAAVVGHQHIVEYLI 227
                                      G +PL  AA  GH  IV  L+
Sbjct: 303 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 6e-29
 Identities = 58/219 (26%), Positives = 88/219 (40%), Gaps = 25/219 (11%)

Query: 34  GATPLIMACRNGHKEIVEYLVKE------------------------CKADVEETGAVMF 69
             TPL  A R GH  +V+ L++                                      
Sbjct: 66  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 125

Query: 70  DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLV 129
              T +G  PL  AA  G + + + L+E  A  N+  +   TPL  A    +  +VK L+
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
             G        +G+T L IA  +    + + LL      N +S +G T LH  A+ G  E
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 245

Query: 190 ILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
           ++ LLLS  A  ++ +  G+TPL   A  GH  + + LI
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-28
 Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 13/193 (6%)

Query: 21  HEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPL 80
            +           G TPL +A + GH E+V  L+ +             +     G  PL
Sbjct: 218 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA---------NGNLGNKSGLTPL 268

Query: 81  WCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNR 140
              A  GH+P+   L++HG  V++ TR   TPL  A   G+  +VK+L++H AD     +
Sbjct: 269 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 328

Query: 141 HGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI---LKLLLSH 197
            G++ L  A  +GH  IV  LL   A  N  SS G T L      G I +   LK++   
Sbjct: 329 LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 388

Query: 198 GARMDV-DSYGMT 209
            + + V D + M+
Sbjct: 389 TSFVLVSDKHRMS 401

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 4e-29
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 5/148 (3%)

Query: 25  QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA 84
           +   + + GGAT L+ A   GH E+++ L+ E  ADV     +  +         L  + 
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI----HALLSSD 194

Query: 85  AAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGH 143
            +    I   L++HGA VN +     TPL  A    H G+V+ L+E    +   ++  G 
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 144 TCLMIACYKGHYRIVKYLLSLNADMNRK 171
           T L++A      +I + L    A  +  
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 7e-29
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 7/190 (3%)

Query: 21  HEEIQMVTKFKFGGATPLIMACRNGHKEIVEY-LVKECKADVEETGAVMFDHETVEGAPP 79
             +   V +  F G T  + A   G  + +++   +    ++        +     GA  
Sbjct: 92  LSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151

Query: 80  LWCAAAAGHLPIVQFLVEH-GAKVNSKTR----TNSTPLRAACFDGHFGVVKYLVEHGAD 134
           L  AA  GH+ +++ L++  GA VN+            L ++       +   L++HGAD
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLN-ADMNRKSSKGNTALHDCAEAGSIEILKL 193
             V    G T L++A  K H  +V+ LL     ++N   S G TAL    E    +I +L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 194 LLSHGARMDV 203
           L   GA  D 
Sbjct: 272 LCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-26
 Identities = 57/236 (24%), Positives = 85/236 (36%), Gaps = 41/236 (17%)

Query: 33  GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHE-------------------- 72
           GG TPL  A +   ++IVE L++     V                               
Sbjct: 38  GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 73  ----TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK----------TRTNSTPLRAACF 118
                  G      AA  G +  ++FL + GA VN +           +  +T L  A  
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 119 DGHFGVVKYLVEH-GADFEVSNRHGHTCLMIACYKGHYR----IVKYLLSLNADMNRKSS 173
            GH  V+K L++  GAD    +  G   L+ A           I   LL   AD+N +  
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217

Query: 174 KGNTALHDCAEAGSIEILKLLLSH-GARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           +G T L    E   + +++ LL      ++  DS G T LL A  +  + I E L 
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 1e-20
 Identities = 62/241 (25%), Positives = 93/241 (38%), Gaps = 57/241 (23%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
             LI A +N   ++V+ L+ E  A+V          E   G  PL  A       IV+ L
Sbjct: 7   HLLIKAVQNEDVDLVQQLL-EGGANVNFQ-------EEEGGWTPLHNAVQMSREDIVELL 58

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           + HGA    + +  +TP   A   G   ++K  +  GAD    + +G T  M A   G  
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118

Query: 156 RIVKYLLSLNADMNRK----------SSKGNTALHDCAEAGSIEILKLLL---------- 195
           + +K+L    A++N +             G TAL D AE G +E+LK+LL          
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 196 ----------------------------SHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
                                        HGA ++V    G TPL+ A    H  +V+ L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 227 I 227
           +
Sbjct: 239 L 239

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 2e-18
 Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 12/166 (7%)

Query: 74  VEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHG 132
           VE    L  A     + +VQ L+E GA VN +      TPL  A       +V+ L+ HG
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 133 ADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           AD  +  ++G T  ++A   G  +++K  LS  AD+N     G TA  + A  G ++ LK
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 193 LLLSHGARMD-----------VDSYGMTPLLAAAVVGHQHIVEYLI 227
            L   GA ++           +   G T L+ AA  GH  +++ L+
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 172 SSKGNTALHDCAEAGSIEILKLLLSHGARMDV--DSYGMTPLLAAAVVGHQHIVEYLI 227
           + + N  L    +   +++++ LL  GA ++   +  G TPL  A  +  + IVE L+
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 8e-28
 Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 11/195 (5%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             T L  AC  GH EIVE+L++              + +   G  PL  AA+AG   IV+
Sbjct: 37  SRTALHWACSAGHTEIVEFLLQLGV---------PVNDKDDAGWSPLHIAASAGRDEIVK 87

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+  GA+VN+  +   TPL  A       +   L+E GA+ +  + +  T +  A  KG
Sbjct: 88  ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG 147

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           + +++  LL   A  N + ++GNT LH   +   +E  KLL+S GA + + +    TPL 
Sbjct: 148 NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQ 207

Query: 213 AAAVVGHQHIVEYLI 227
            A   G   I++ ++
Sbjct: 208 VAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 1e-19
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 2/149 (1%)

Query: 80  LWCAAAAGHLPIV-QFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
           +   A +G L  + + ++   +      + + T L  AC  GH  +V++L++ G      
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           +  G + L IA   G   IVK LL   A +N  +  G T LH  A     EI  +LL  G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
           A  D  D Y  T +  AA  G+  ++  L
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHIL 155

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 35/120 (29%)

Query: 143 HTCLMIACYKGHYRIVK-YLLSLNADMNRKSSKGNTALHDCAEAG--------------- 186
           +  +    Y G    +K  +L+  +   R      TALH    AG               
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 187 ------------------SIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
                               EI+K LL  GA+++ V+  G TPL  AA      I   L+
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL +AC     E  + LV    A +          E  E   PL  A   G   I++
Sbjct: 169 GNTPLHLACDEERVEEAKLLV-SQGASI--------YIENKEEKTPLQVAKG-GLGLILK 218

Query: 94  FLVE 97
            +VE
Sbjct: 219 RMVE 222

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  106 bits (265), Expect = 9e-28
 Identities = 25/218 (11%), Positives = 58/218 (26%), Gaps = 18/218 (8%)

Query: 21  HEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEE---TGAVMFDHETVEGA 77
                 +    +  A  + +      +++ + L     A               + ++  
Sbjct: 33  SANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY-YAHYNRNAKQLWSDAHKKGIKSE 91

Query: 78  PPLWCAAAAGHLPI---VQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD 134
              + AA  G       +  L+     V      N    R A  +GH  V+  L E    
Sbjct: 92  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 151

Query: 135 FEVSNR--HGHTCLMIACYKGHYRIVKYLLSLNADMNR---KSSKGNTALHDCAEAGSIE 189
             ++      +    +A   GH  ++  L  L         ++             G   
Sbjct: 152 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 190 ILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           ++  LL     +          +     G +++  ++ 
Sbjct: 212 VINFLLDCPVMLA------YAEIHEFEYGEKYVNPFIA 243

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  104 bits (261), Expect = 3e-27
 Identities = 34/243 (13%), Positives = 58/243 (23%), Gaps = 32/243 (13%)

Query: 9   YTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVK--ECKADVEETGA 66
              Y A       +      K          +A   G    ++ L         V+   A
Sbjct: 65  LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 124

Query: 67  VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT--NSTPLRAACFDGHFGV 124
                   E       AA  GHL ++  L E             N    R A  +GH  V
Sbjct: 125 --------ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176

Query: 125 VKYLVEHGA---DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHD 181
           +  L E         +   + +     A  +GH+ ++ +LL     +             
Sbjct: 177 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 236

Query: 182 -------CAEAGSIEILKLLLSHGARMDVD----------SYGMTPLLAAAVVGHQHIVE 224
                         E+             D           Y +  L+          + 
Sbjct: 237 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR 296

Query: 225 YLI 227
           +L+
Sbjct: 297 FLL 299

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 98.0 bits (243), Expect = 1e-24
 Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 44/225 (19%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
                 +A  NGH  ++  L  E                          AA  GHL ++ 
Sbjct: 126 NYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMIQAE------NYHAFRLAAENGHLHVLN 178

Query: 94  FLVEHGAKVNS---KTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH--------- 141
            L E      +   +         AA   GH  V+ +L++       +  H         
Sbjct: 179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 238

Query: 142 -------------GHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSI 188
                         H    ++   G + +V            +       L    +   +
Sbjct: 239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLV------TKSECLQGFYMLRNLIRRNDEVLL 292

Query: 189 EILKLLLSHGA------RMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           + ++ LLS            +       L  A  +G+Q     L+
Sbjct: 293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 77.2 bits (189), Expect = 4e-17
 Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 41/193 (21%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
                 +A  NGH  ++  L +    +           +        W A   GH  ++ 
Sbjct: 161 NYHAFRLAAENGHLHVLNRLCELAPTEAT------AMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE-------VSNRHGH--- 143
           FL++    +                 G   V  ++  H    +       +SN  G    
Sbjct: 215 FLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 267

Query: 144 -------------TCLMIACYKGHYRIVKYLLSLNADMNRKS-----SKGNTALHDCAEA 185
                          L+    +     +++LLS+                N  L      
Sbjct: 268 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 186 GSIEILKLLLSHG 198
           G+     LLLS  
Sbjct: 328 GNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 19/163 (11%), Positives = 40/163 (24%), Gaps = 24/163 (14%)

Query: 7   DEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
           + Y    A +    H  I  +       A   I     G K +  ++ +      E    
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE---- 251

Query: 67  VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK 126
                           +   G   +V            +       L     +     ++
Sbjct: 252 ---------MHDAFKLSNPDGVFDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIR 296

Query: 127 YLVEHGADFEVSNRH-----GHTCLMIACYKGHYRIVKYLLSL 164
           +L+       ++         +  L +A   G+      LLS+
Sbjct: 297 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.1 bits (222), Expect = 3e-22
 Identities = 43/243 (17%), Positives = 66/243 (27%), Gaps = 55/243 (22%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L +A  + H+  +++L+    A  E       D +   G   L  AA  G    V+
Sbjct: 9   GDTALHLAVIHQHEPFLDFLL-GFSAGHEY-----LDLQNDLGQTALHLAAILGEASTVE 62

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHG----------- 142
            L   GA V    R   T L  AC          L++                       
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 143 ---HTCLMIACYKGHYRIVKYLLSLNADMNRKSSKG------------------------ 175
                  + +                  +  ++  G                        
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 176 ----------NTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVE 224
                      T LH   EA +  +L+LLL  GA        G TPL +A +  +  +  
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 225 YLI 227
            L 
Sbjct: 243 LLR 245

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.2 bits (204), Expect = 1e-19
 Identities = 31/171 (18%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 40  MACRNGHKEIVEYLVKECKADVEETG-----AVMFDHETVEGAPPLWCAAAAGHLPIVQF 94
           +ACR         L++   +   +                  AP    +           
Sbjct: 84  LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 95  LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH-TCLMIACYKG 153
             +   ++ ++     TPL  A       +V+ L + GAD          T L +A    
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVD 204
              +++ LL   AD   +   G T L       +  + +LL +HGA    D
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 2e-14
 Identities = 33/151 (21%), Positives = 48/151 (31%), Gaps = 17/151 (11%)

Query: 69  FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK---VNSKTRTNSTPLRAACFDGHFGVV 125
           F + T +G   L  A    H P + FL+   A    ++ +     T L  A   G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 126 KYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNT-------- 177
           + L   GA   V+ R GHT L +AC    +     LL       R +S            
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 178 ------ALHDCAEAGSIEILKLLLSHGARMD 202
                 A  D       E          +++
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLE 152

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 3/139 (2%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFE---VSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
           T L  A    H   + +L+   A  E   + N  G T L +A   G    V+ L +  A 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 168 MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTPLLAAAVVGHQHIVEYLI 227
           +      G+TALH      +     +LL        D+       +             +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 228 GLNIVSRKEKIDALELLGA 246
                   E+    E    
Sbjct: 131 DSQPNPENEEEPRDEDWRL 149

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.5 bits (223), Expect = 4e-22
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 16/196 (8%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G TPL       + E+V++LV +  ++       M +   V+    +    +     ++ 
Sbjct: 107 GNTPLHWLTSIANLELVKHLV-KHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 94  FLVEHGAKVNSKTRTNSTPL-RAACFDGHFGVVKYLVE---------HGADFEVSNRHGH 143
           +L       +S  RT    +   +   G     KY ++              +       
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 144 TCLMIACYKGHYRIVKYLLS---LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGAR 200
           +       +    I++ L     +   +N + S G+T L+  A  G+I I+  LL +GA 
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 284

Query: 201 MDV-DSYGMTPLLAAA 215
             + +  G+ P+   A
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.5 bits (184), Expect = 1e-16
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 21/174 (12%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFG-------VVKY 127
            G  PL    +  +L +V+ LV+HG+          + L  A    +         ++ Y
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 128 LVEHGADFEVSNRHG-HTCLMIACYKGHYRIVKYLLSL---------NADMNRKSSKGNT 177
           L       +  NR   H  ++ +   G     KY L +         N  +   +++  +
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 178 ALHDCAEAGSIEILKLLLSHGARMDV----DSYGMTPLLAAAVVGHQHIVEYLI 227
             +D        IL+ L       ++    DS G T L  AA +G+  IV+ L+
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.3 bits (142), Expect = 5e-11
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 19/162 (11%)

Query: 91  IVQFLVEHGAKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIA 149
           +          +N     + +TPL       +  +VK+LV+HG++    +  G +CL+ A
Sbjct: 88  VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

Query: 150 CYKGH----YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE------------ILKL 193
               +          L  L   +  + S   T LH       +             ++  
Sbjct: 148 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 207

Query: 194 LLSHGAR--MDVDSYGMTPLLAAAVVGHQHIVEYLIGLNIVS 233
           ++    R      +   +            I+E L    I++
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 249

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 9e-07
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 2/154 (1%)

Query: 89  LPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS-NRHGHTCLM 147
           L I++ L       N +       L+   F     +   L    ++              
Sbjct: 19  LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 78

Query: 148 IACYKGHYRIVKYLLSLNADMNRKS-SKGNTALHDCAEAGSIEILKLLLSHGARMDVDSY 206
           ++       +     +   ++N      GNT LH      ++E++K L+ HG+       
Sbjct: 79  VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 138

Query: 207 GMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDA 240
                L  AV    +         +      +  
Sbjct: 139 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 172

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 87.2 bits (214), Expect = 1e-21
 Identities = 46/194 (23%), Positives = 69/194 (35%), Gaps = 9/194 (4%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G T L +A R    +  + L+                 +     P     AA        
Sbjct: 23  GETSLHLAARFARADAAKRLLDAGA--------DANSQDNTGRTPLHAAVAADAMGVFQI 74

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L      +N++    +TPL  A      G+V+ L+   AD   ++  G T L  A    
Sbjct: 75  LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN 134

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLL 212
           +   V  LL  +A+ + +  K  T L   A  GS E  K LL + A  ++ D     P  
Sbjct: 135 NTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRD 194

Query: 213 AAAVVGHQHIVEYL 226
            A+   H  IV  L
Sbjct: 195 VASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 1e-06
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 124 VVKYLVEHGADF-EVSNRHGHTCLMIACYKGHYRIVKYL 161
           V+  L+  GA+     ++ G T L +A         K L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 187 SIEILKLLLSHGARMD--VDSYGMTPLLAAAVVGHQHIVEYL 226
           + +++  LL+ GA ++  +D  G T L  AA        + L
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 156 RIVKYLLSLNADMNRKSSK-GNTALHDCAEAGSIEILKLLLSHGARMDVDSYGM 208
           +++  LL+  A++N    K G T+LH  A     +  K LL  GA  +      
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTG 56

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 88.6 bits (218), Expect = 2e-21
 Identities = 53/258 (20%), Positives = 87/258 (33%), Gaps = 54/258 (20%)

Query: 28  TKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETG---------AVMFDHETVEGAP 78
           TK KF      + AC +G  E V  L+ E  AD+             A + D+  +    
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFL 92

Query: 79  ----------------PLWCAAAAGHLPIVQFLVEHGAKVNSKTR--------------- 107
                           PL  AA+ G+L I ++L+  GA V +                  
Sbjct: 93  VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME 152

Query: 108 ------------TNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
                             +           ++L     +     + G T L +A  KG+ 
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAA 214
            ++K L+    D+N K   G T LH  A  G  E  ++L+ +   M+ V+  G T    A
Sbjct: 213 EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

Query: 215 AVVGHQHIVEYLIGLNIV 232
                 ++ E     N++
Sbjct: 273 DEDILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.7 bits (156), Expect = 6e-13
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 7   DEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGA 66
           +E            +       +    G T L +A   G+ E+++ L  + + DV     
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL-IQARYDV----- 225

Query: 67  VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVK 126
              + +  +G  PL  AA  G     + LVE+   + +  +   T    A  D    ++ 
Sbjct: 226 ---NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED----ILG 278

Query: 127 YLVEHGA 133
           YL E   
Sbjct: 279 YLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.6 bits (109), Expect = 8e-07
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 165 NADMNRKSSK----GNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH 219
              + RK +K              +G  E +  LL  GA ++  +  G+T L  A +  +
Sbjct: 26  PPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

Query: 220 QHIVEY 225
             +V++
Sbjct: 86  VDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 13/77 (16%)

Query: 27  VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA 86
           V    + G TPL  A   G +E    LV E   D+        +     G      A   
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDM--------EAVNKVGQTAFDVADED 275

Query: 87  GHLPIVQFLVEHGAKVN 103
               I+ +L E   K N
Sbjct: 276 ----ILGYLEELQKKQN 288

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 46/243 (18%), Positives = 80/243 (32%), Gaps = 50/243 (20%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
             T L     N   E  E L+     +    GA   +    +   PL  A  A    +V 
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAMDCDENTPLMLAVLARRRRLVA 91

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGA-------------------- 133
           +L++ GA      ++  + L  A  +  FG++ Y++                        
Sbjct: 92  YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 151

Query: 134 ---------------------------DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN- 165
                                        +     G T L  A    +  IVKYL+    
Sbjct: 152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 211

Query: 166 ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVE 224
           ++ +++   G T +   A+ G IE++  L+  GA ++ VD+   T    A    H +IV+
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

Query: 225 YLI 227
              
Sbjct: 272 IFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 2e-11
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 83  AAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEH--------GAD 134
             AAG   I + +      +    R N T L     +      + L+ H        GAD
Sbjct: 8   TEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 135 FEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
               +   +T LM+A      R+V YL+   AD    +    +ALH  A      ++  +
Sbjct: 67  VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

Query: 195 LSHGARMDVDSYGM 208
           L+            
Sbjct: 127 LNSTKLKGDIEELD 140

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.0 bits (141), Expect = 6e-11
 Identities = 50/250 (20%), Positives = 84/250 (33%), Gaps = 68/250 (27%)

Query: 36  TPLIMACR-NGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQF 94
           +P+ +     G   I E + +E    ++                 L   A+       + 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIID----------PRHNRTVLHWIASNSSAEKSED 51

Query: 95  LVEH--------GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL 146
           L+ H        GA VN+     +TPL  A       +V YL++ GAD  + N+   + L
Sbjct: 52  LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 111

Query: 147 MIACYKGHYRIVKYLLSL------------------------------------------ 164
             A     + ++ Y+L+                                           
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 171

Query: 165 -----NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA--RMDVDSYGMTPLLAAAVV 217
                 A  + +  KG TALH  A+  ++ I+K L+      +   D  G TP++ AA  
Sbjct: 172 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 231

Query: 218 GHQHIVEYLI 227
           G   +V YLI
Sbjct: 232 GRIEVVMYLI 241

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 8e-18
 Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 34/224 (15%)

Query: 34  GATPLIMACRNGHKEIVEYLVK---ECKADVEETGA------------------------ 66
           G TPL +A   G+   V  LV    +   +++                            
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 67  -VMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS----TPLRAACFDGH 121
                     G      A        ++ L++  A         +    T L  A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 122 FGVVKYLVEHGADFEVSNRHGHT-CLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALH 180
              V+ L+E GAD +  +       L+ A       +V+ LL   A++N +   G++ALH
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 182

Query: 181 DCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIV 223
             +  G + +++ L+  GA   + + +  TPL+ A       I+
Sbjct: 183 SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 2e-14
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 6/154 (3%)

Query: 40  MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG 99
           +AC +     +  L+        +  A  +D  T      L  A        VQ L+E G
Sbjct: 79  LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-----ALHVAVNTECQETVQLLLERG 133

Query: 100 AKVNSKTRTNST-PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
           A +++    +   PL  A  +    +V+ L++HGA+       G + L  A  +G   +V
Sbjct: 134 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV 193

Query: 159 KYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           + L+   AD + K+   +T L        I+IL+
Sbjct: 194 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 7e-14
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 25  QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAA 84
             +    + G T L +A     +E V+ L++          A +   +   G  PL  A 
Sbjct: 101 LDLEARNYDGLTALHVAVNTECQETVQLLLERG--------ADIDAVDIKSGRSPLIHAV 152

Query: 85  AAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHT 144
               L +VQ L++HGA VN++  + S+ L +A   G   +V+ LV  GAD  + N H  T
Sbjct: 153 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT 212

Query: 145 CLMIACYKGHYRIVK 159
            LM+A  +    I++
Sbjct: 213 PLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 3e-08
 Identities = 42/196 (21%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 75  EGAPPLWCAAAAGHLPIVQFLV----EHGAKVNSKTRTNSTPL----------------- 113
           +G  PL  A   G+LP V  LV    + G +++       TPL                 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 114 ----------------RAACFDGHFGVVKYLVEHGADFEVSNRH----GHTCLMIACYKG 153
                             AC       ++ L++  A   +        G T L +A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 154 HYRIVKYLLSLNADMNRKSSKG-NTALHDCAEAGSIEILKLLLSHG-ARMDVDSYGMTPL 211
               V+ LL   AD++    K   + L    E  S+ +++LLL HG         G + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 212 LAAAVVGHQHIVEYLI 227
            +A+  G   +V  L+
Sbjct: 182 HSASGRGLLPLVRTLV 197

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 21  HEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPL 80
            +    V    + G++ L  A   G   +V  LV    AD           +      PL
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADS--------SLKNCHNDTPL 214

Query: 81  WCAAAAGHLPIVQ 93
             A +   + I++
Sbjct: 215 MVARSRRVIDILR 227

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 8e-16
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 13/202 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
           G + L +A  +  K +   ++++ K D+          +T     PL  A       I +
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQT-----PLHLAVITNQPEIAE 56

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH------GHTCLM 147
            L+  G     +    +TPL  AC  G    V  L +      + +        GHTCL 
Sbjct: 57  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 116

Query: 148 IACYKGHYRIVKYLLSLNAD-MNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDS 205
           +A   G+  IV+ L+SL AD   ++   G TALH   +  + +++ LLL  GA ++ V  
Sbjct: 117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 176

Query: 206 YGMTPLLAAAVVGHQHIVEYLI 227
            G +P           I + L 
Sbjct: 177 QGYSPYQLTWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 5e-11
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 1/129 (0%)

Query: 40  MACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHG 99
                  +  +  +    ++        +       G   L  A+  G+L IV+ LV  G
Sbjct: 75  PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 134

Query: 100 AKVNSKTRTN-STPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIV 158
           A VN++   N  T L  A    +  +V  L++ GAD       G++   +   +   RI 
Sbjct: 135 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ 194

Query: 159 KYLLSLNAD 167
           + L  L  +
Sbjct: 195 QQLGQLTLE 203

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.9 bits (169), Expect = 1e-15
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
             L+ A R G  + V  L+    A                G  PL  AA  GH    + L
Sbjct: 4   KKLLEAARAGQDDEVRILM-ANGAPF---------TTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           +  G   +++T+ + TPL  A  +GH  +V+ L++HGAD    +    T L  A    H 
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL 194
            +V+ L+   AD++ +S    TA     + G+ ++ ++L
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.9 bits (156), Expect = 7e-14
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  AA AG    V+ L+ +GA         ++PL  A   GHF   + L+  G   +  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
            +   T L +A  +GH  IV+ LL   AD+N K     TALH   E    E+++LL+ +G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 199 ARMDV-DSYGMTPLLAAAVVGHQHIVEYL 226
           A +     +  T    +   G++ + E L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 175 GNTALHDCAEAGSIEILKLLLSHGARMDVDSYGMTP 210
               L + A AG  + +++L+++GA    D  G +P
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSP 37

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 2e-14
 Identities = 41/233 (17%), Positives = 74/233 (31%), Gaps = 52/233 (22%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
            PL  AC       V+ L+    + +          +  +G  PL  + +     I  FL
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLL--------LQKDQDGRIPLHWSVSFQAHEITSFL 53

Query: 96  VEHG--------------------------------------AKVNSKTRTNSTPLRAAC 117
           +                                           +N  T    T L  A 
Sbjct: 54  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 113

Query: 118 FDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR-KSSKGN 176
               F V ++L+E+GA   + ++     L  A   G  ++++ L  L       +  +G 
Sbjct: 114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 173

Query: 177 TALHDCAEAGSIEILKLLLS-HGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
           T L      G  +   LL+  +GA  D VD+ G      A    ++ + ++ +
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 14/161 (8%)

Query: 9   YTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVM 68
             + +             + K    G T L +A      E+ ++L++             
Sbjct: 80  VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA---------S 130

Query: 69  FDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK-VNSKTRTNSTPLRAACFDGHFGVVKY 127
              +      PL  AA+ G L +++ L   G   VN + +   TPL  A  +GH      
Sbjct: 131 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 190

Query: 128 LVE-HGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNAD 167
           LVE +GA++++ +  G     +A    + ++ K+ L+   D
Sbjct: 191 LVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 176 NTALHDCAEAGSIEILKLLL-SHGARMDV-DSYGMTPLLAAAVVGHQH 221
           N  LH          ++ LL S  + +   D  G  PL  +       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 48

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 11/97 (11%)

Query: 4   LTLDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEE 63
           L           +E         V      G TPL  A   GH +    LV++  A+   
Sbjct: 142 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-- 199

Query: 64  TGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA 100
                 D    +GA     A    +  + +F + +  
Sbjct: 200 ------DLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 7e-14
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 3/126 (2%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  ++  G   +VQ ++      +       T L  A   GH  +VK+LV+ G +   +
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN---TALHDCAEAGSIEILKLLL 195
           +  G T L  A    + ++ K+L+   A +   +           +  E G  +  + L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 196 SHGARM 201
               +M
Sbjct: 124 GVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
             L  +  +G F +V+ ++    D  + N  G T L  A   GH  IVK+L+    ++N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV----DSYGMTPLLAAAVVGHQHIVEYL 226
             S G T LH  A   ++++ K L+  GA +      D             G+    ++L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 227 IGL 229
            G+
Sbjct: 123 YGV 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 8e-10
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
             L+ +   G  ++V+ ++ E                  EG   L  A  AGH  IV+FL
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEV---------DDPSLPNDEGITALHNAVCAGHTEIVKFL 53

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGAD-FEVSNRHGHTC--LMIACYK 152
           V+ G  VN+      TPL  A    +  V K+LVE GA  F ++     T         +
Sbjct: 54  VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 113

Query: 153 GHYRIVKYLLSLNADM 168
           G+ +  ++L  +   M
Sbjct: 114 GYTQCSQFLYGVQEKM 129

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNS------TPLRAACFDGHFG---VVKYLV 129
            L  A     +  +      G  +  K    +      T L  A          +V +LV
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 130 EHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE 189
           ++  + +     G T L   C   +   +K LL   A +   +  G T L          
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 190 ILKLLLSHGAR 200
             +LL    + 
Sbjct: 129 CEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 5e-13
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAA-GHLPIVQF 94
             L  A +      +     +   D+ E   +   HE  E A  L   +     L IV F
Sbjct: 8   HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 66

Query: 95  LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH 154
           LV++   ++ +T   ST L   C   +   +K L+   A  E++N  G T L IA    H
Sbjct: 67  LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 126

Query: 155 YRIVKYLLSLNAD 167
               + L    + 
Sbjct: 127 EHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 3e-11
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 10/134 (7%)

Query: 104 SKTRTNSTPLRAACFDGHFGVVKYLVEHGADF------EVSNRHGHTCLMIACY---KGH 154
           + T      L  A        +      G D          +    T L +A     +  
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLA 213
             IV +L+  + ++++++ KG+TALH C    + E LKLLL   A +++ +  G TPL  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 214 AAVVGHQHIVEYLI 227
           A  + H+H  E L 
Sbjct: 121 AKRLKHEHCEELLT 134

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 12/111 (10%)

Query: 34  GATPLIMACRN---GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLP 90
             T L +A R+       IV++L  +   ++++                        +  
Sbjct: 45  DETALHLAVRSVDRTSLHIVDFL-VQNSGNLDKQTGKGSTAL--------HYCCLTDNAE 95

Query: 91  IVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRH 141
            ++ L+   A +     +  TPL  A    H    + L +  +    S+ H
Sbjct: 96  CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 6e-12
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 10/164 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
               L  A   G  + V  L+       +                        G   I  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA---------LQVMMFGSTAIAL 52

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L++ GA  N +  + ++P+  A   G    +K LVEHGAD  V +  G   + +A  +G
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112

Query: 154 HYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
           H  +V +L +  +D++R+ ++G T L    + G+ +++ +L  H
Sbjct: 113 HTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 2e-11
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 2/151 (1%)

Query: 79  PLWCAAAAGHLPIVQFLVE-HGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEV 137
            L  AAA G +  V+ L+       ++  R   T        G   +   L++ GA   V
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGSTAIALELLKQGASPNV 63

Query: 138 SNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH 197
            +  G + +  A   G    +K L+   AD+N     G   +H   + G   ++  L + 
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 198 GARMDVDSYGMTPLLAAAVVGHQHIVEYLIG 228
                 D+ G+TPL  A   G Q +V+ L G
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 5e-11
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 3/151 (1%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
            L  AAA G L  +  L+++   VN++              G+  + + L+  GA+ ++ 
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
           +R G   +  A   G    ++ LL   AD+N + ++GN  LH  A+ G + +++ L+ H 
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 199 ARMD--VDSYGMTPLLAAAVVGHQHIVEYLI 227
           A      +  G T    A + G   +V  + 
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (132), Expect = 2e-10
 Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 9/163 (5%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
             L  A   G  E +  L+ +   +V        + +   G   L            + L
Sbjct: 3   NELASAAARGDLEQLTSLL-QNNVNV--------NAQNGFGRTALQVMKLGNPEIARRLL 53

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           +             +    AA       +   L          N       + A      
Sbjct: 54  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 113

Query: 156 RIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHG 198
            +   +    +++  ++ KG+TA       G  E++ L+ ++G
Sbjct: 114 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 34  GATPLIMACRNGHKEIVEYLVK 55
           G T   +A   G  E+V  +  
Sbjct: 133 GDTACDLARLYGRNEVVSLMQA 154

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 2e-10
 Identities = 22/121 (18%), Positives = 41/121 (33%)

Query: 76  GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADF 135
            A  L  AAA G +  V+ L+E GA  N+       P++             L+      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 136 EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL 195
                     +  A  +G    +  L    A ++ + + G   +    E G  ++ + L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 196 S 196
           +
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 6e-08
 Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 34  GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQ 93
            A  L  A   G  E V  L++              +     G  P+             
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG---------ANPNAPNSYGRRPIQVMMMGSARVAEL 53

Query: 94  FLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKG 153
            L+       +   T + P+  A  +G    +  L   GA  +V +  G   + +A   G
Sbjct: 54  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 113

Query: 154 HYRIVKYLLS 163
           H  + +YL +
Sbjct: 114 HRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 3e-07
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM 168
           ++  L  A   G    V+ L+E GA+    N +G   + +            LL      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 169 NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD-VDSYGMTPLLAAAVVGHQHIVEYLI 227
               +     +HD A  G ++ L +L   GAR+D  D++G  P+  A  +GH+ +  YL 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (100), Expect = 2e-06
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 13/127 (10%)

Query: 36  TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL 95
              + A +NG  + V+  V + +           +     G  PL  AA  G L I++FL
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGE---------DVNRTLEGGRKPLHYAADCGQLEILEFL 54

Query: 96  VEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHY 155
           +  GA +N+  + + TPL +A ++GH   VK L+  GAD  V    G T L     +   
Sbjct: 55  LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA-- 112

Query: 156 RIVKYLL 162
             +K LL
Sbjct: 113 --IKALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (98), Expect = 4e-06
 Identities = 36/114 (31%), Positives = 48/114 (42%)

Query: 79  PLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVS 138
               A   G L  V+  V  G  VN        PL  A   G   ++++L+  GAD    
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64

Query: 139 NRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILK 192
           ++H  T L+ A Y+GH   VK LLS  AD   K   G TAL          +L+
Sbjct: 65  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR 170
                A  +G    VK  V  G D   +   G   L  A   G   I+++LL   AD+N 
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 171 KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI 227
                 T L      G +  +KLLLS GA   V    G+T L A         ++ L+
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-40  Score=249.17  Aligned_cols=198  Identities=27%  Similarity=0.303  Sum_probs=177.1

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..+.+|.||||+||.+|+.+++++|++.. .+     ....+.++..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~-a~-----~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~   77 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFS-AG-----HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG   77 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHH-TT-----SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcC-CC-----cccccCcCCCCCCccchHHhhcccccccccccccccccccccc
Confidence            35789999999999999999999999872 11     2235667888999999999999999999999999999999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCC-----------------------------------------------CcccCCCC
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGA-----------------------------------------------DFEVSNRH  141 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~-----------------------------------------------~~~~~~~~  141 (247)
                      |.+|||+|+..++.+++++|++...                                               .++.++..
T Consensus        78 g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~  157 (255)
T d1oy3d_          78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (255)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred             cchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccccc
Confidence            9999999999999999999875321                                               12346778


Q ss_pred             CCCHHHHHHHcChHHHHHHHHhcCCCccc-cCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCC
Q psy599          142 GHTCLMIACYKGHYRIVKYLLSLNADMNR-KSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGH  219 (247)
Q Consensus       142 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~  219 (247)
                      |.||||+|+..++.+++++|++.+.+.+. .+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..++
T Consensus       158 g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             CcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            89999999999999999999999998865 467899999999999999999999999999997 8889999999999999


Q ss_pred             HHHHHHHHhcChh
Q psy599          220 QHIVEYLIGLNIV  232 (247)
Q Consensus       220 ~~~~~~Ll~~g~~  232 (247)
                      .+++++|+++|+.
T Consensus       238 ~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         238 PILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999995

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-38  Score=234.22  Aligned_cols=194  Identities=31%  Similarity=0.438  Sum_probs=174.0

Q ss_pred             HHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCc
Q psy599           25 QMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNS  104 (247)
Q Consensus        25 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~  104 (247)
                      ..+...|..|+||||+|+..|+.+++++++.....         ....+..+.++++.++..++.+++++|+++|++++.
T Consensus        28 ~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~   98 (223)
T d1uoha_          28 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---------VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA   98 (223)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CcCcCcCCCCCCHHHHHHHhhhhcccccccccccc---------cccccccccccccccccccccchhHHHhccCceeEe
Confidence            34667788999999999999999999999987322         233445678999999999999999999999999999


Q ss_pred             cCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q psy599          105 KTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAE  184 (247)
Q Consensus       105 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  184 (247)
                      ++..|.||||+|+..|+.+++++|+++|++++..+..+.||+|.|+..++.+++++|...+.+++.+|..|+||||.|+.
T Consensus        99 ~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~  178 (223)
T d1uoha_          99 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD  178 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             eCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh
Q psy599          185 AGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG  228 (247)
Q Consensus       185 ~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~  228 (247)
                      .|+.+++++|+++|++++. +..|+||||+|. .|+.+++++|++
T Consensus       179 ~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         179 EERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            9999999999999999987 889999999884 688999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-37  Score=228.52  Aligned_cols=205  Identities=25%  Similarity=0.293  Sum_probs=192.2

Q ss_pred             CchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhH
Q psy599           34 GATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPL  113 (247)
Q Consensus        34 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l  113 (247)
                      ++++|+.+|..|+.+.++.++...        +......|..|.||||+|+..|+.+++++++..+......+..+.+++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~--------~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~   74 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD--------KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL   74 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC--------GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC--------CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccc
Confidence            568899999999999999999774        334467788999999999999999999999999999988888999999


Q ss_pred             HHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHH
Q psy599          114 RAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKL  193 (247)
Q Consensus       114 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~  193 (247)
                      +.++..++.+++++|++++++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+..+++++
T Consensus        75 ~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          75 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhccC
Q psy599          194 LLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       194 Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  246 (247)
                      |.+.|.+++. +..|+||||+|+..|+.+++++|++.|+++..++.++.++++.
T Consensus       155 L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~  208 (223)
T d1uoha_         155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV  208 (223)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             hccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            9999999997 8999999999999999999999999999999988888777654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=209.31  Aligned_cols=203  Identities=24%  Similarity=0.334  Sum_probs=171.7

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCc---cCCCCCh
Q psy599           35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNS---KTRTNST  111 (247)
Q Consensus        35 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~---~~~~~~~  111 (247)
                      ++|||+||..|+.+.++.|++..+.        ..+..|..|.||||+|+..|+.+++++|+++|++++.   .+..|.+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~--------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS--------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG--------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC--------cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccc
Confidence            5899999999999999999987433        3466778999999999999999999999999998764   4567889


Q ss_pred             hHHHHHhcCChHHHHHHHHCCCCc--ccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHH
Q psy599          112 PLRAACFDGHFGVVKYLVEHGADF--EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIE  189 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  189 (247)
                      ++++++..+..++++.++..+...  ...+..+.|+++.++..++.++++.|+..+......+..|+||||+|+..|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccc
Confidence            999999999999998888876543  445667888999999999999999999888888888888999999999999999


Q ss_pred             HHHHHHHcC-CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh-cChhhhhhccchhhhcc
Q psy599          190 ILKLLLSHG-ARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG-LNIVSRKEKIDALELLG  245 (247)
Q Consensus       190 ~i~~Ll~~g-~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~  245 (247)
                      ++++|++.| .+++. +..|.||||+|+..++.+++++|++ .|+++..+..++.++++
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~  211 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED  211 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGG
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            999999887 45554 7788999999999999999999886 58888888777777665

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=218.97  Aligned_cols=199  Identities=26%  Similarity=0.359  Sum_probs=172.7

Q ss_pred             CCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChh
Q psy599           33 GGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTP  112 (247)
Q Consensus        33 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  112 (247)
                      +|.||||+|+..|+.+++..+++.....     +..++..|..|.||||+|+..|+.+++++|++.|++++.++..|.+|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~-----~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~   75 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD-----LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC----------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC-----CCCcccCCCCCCccccccccccccccccccccccccccccccccccc
Confidence            6999999999999977666665432211     33456778899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHCCCCc------ccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccC-CCCCcHHHHHHHh
Q psy599          113 LRAACFDGHFGVVKYLVEHGADF------EVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKS-SKGNTALHDCAEA  185 (247)
Q Consensus       113 l~~a~~~~~~~~~~~Ll~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~  185 (247)
                      ++.++..++.++++.+++.+...      ......+.||+|.|+..++.+++++++..|..++..+ .+|.||||+|+..
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             cccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc
Confidence            99999999999999999876543      3345568899999999999999999999999887654 5799999999999


Q ss_pred             CCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhh
Q psy599          186 GSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKE  236 (247)
Q Consensus       186 ~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  236 (247)
                      |+.+++++|+++|++++. +..|+|||++|+..++.+++++|++.+......
T Consensus       156 g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~~  207 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM  207 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSS
T ss_pred             ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccccc
Confidence            999999999999999997 899999999999999999999999988765443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=8e-34  Score=218.28  Aligned_cols=206  Identities=28%  Similarity=0.370  Sum_probs=185.2

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      +++.|+|+.||..|+.+++++|++.         +..++..|..|.||||+|+..|+.+++++|+++|.+....+..+.+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~---------Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~  108 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER---------GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI  108 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH---------CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC---------CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccc
Confidence            4567999999999999999999987         2334667788999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhc-C-------------------------
Q psy599          112 PLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSL-N-------------------------  165 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~-------------------------  165 (247)
                      |++.++..++.++++.|++++...+..+..+.+++++|+..+..+.++.++.. +                         
T Consensus       109 ~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (291)
T d1s70b_         109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccc
Confidence            99999999999999999999999999999999999999998888888877743 1                         


Q ss_pred             -CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhh
Q psy599          166 -ADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALEL  243 (247)
Q Consensus       166 -~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  243 (247)
                       .+....+..|.||||.|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++.+.++.++.++
T Consensus       189 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~Ta  268 (291)
T d1s70b_         189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA  268 (291)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             ccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence             22345667899999999999999999999999999987 8889999999999999999999999999999998888777


Q ss_pred             ccC
Q psy599          244 LGA  246 (247)
Q Consensus       244 ~~~  246 (247)
                      ++.
T Consensus       269 L~~  271 (291)
T d1s70b_         269 FDV  271 (291)
T ss_dssp             TTS
T ss_pred             HHH
Confidence            764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.6e-34  Score=219.31  Aligned_cols=197  Identities=22%  Similarity=0.313  Sum_probs=168.9

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      ..|.||||+||..|+.+++++|+.......-. .+..++..|..|.||||+|+..|+.+++++|+++|++++.++..|.+
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~-~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t  109 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIA-AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  109 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH-TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHH-cCCCccccCCCCCeeeccccccccccccccccccccccccccccccc
Confidence            45999999999999999999998763322211 13345677889999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCC-----------------------------------------------CCcccCCCCCCC
Q psy599          112 PLRAACFDGHFGVVKYLVEHG-----------------------------------------------ADFEVSNRHGHT  144 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~-----------------------------------------------~~~~~~~~~~~t  144 (247)
                      |+++|+..++.+++.++....                                               ...+..+..|.|
T Consensus       110 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  189 (277)
T d2fo1e1         110 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  189 (277)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             cccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCC
Confidence            999999999988888776421                                               001234557889


Q ss_pred             HHHHHHHcChHHHHHHHH-hcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHH
Q psy599          145 CLMIACYKGHYRIVKYLL-SLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHI  222 (247)
Q Consensus       145 ~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~  222 (247)
                      ++|.++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.++
T Consensus       190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~i  269 (277)
T d2fo1e1         190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI  269 (277)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            999999999999998755 56788889999999999999999999999999999999997 8999999999999999999


Q ss_pred             HHHHHhc
Q psy599          223 VEYLIGL  229 (247)
Q Consensus       223 ~~~Ll~~  229 (247)
                      +++|++.
T Consensus       270 v~lL~~c  276 (277)
T d2fo1e1         270 VDIFDRC  276 (277)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9999863

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-33  Score=212.40  Aligned_cols=176  Identities=26%  Similarity=0.330  Sum_probs=158.5

Q ss_pred             cccCcCCCCHHHHHHHcCCHHHHHHHHHhCCC---CCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHH
Q psy599           70 DHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK---VNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCL  146 (247)
Q Consensus        70 ~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  146 (247)
                      ...+.+|.||||+|+.+|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            45567899999999999999999999999887   567778899999999999999999999999999999999999999


Q ss_pred             HHHHHcChHHHHHHHHhcCCC-----------------------------------------------ccccCCCCCcHH
Q psy599          147 MIACYKGHYRIVKYLLSLNAD-----------------------------------------------MNRKSSKGNTAL  179 (247)
Q Consensus       147 ~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~~~~t~l  179 (247)
                      |+|+..++.+++++|++.+..                                               ++.++..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999998753221                                               334677899999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          180 HDCAEAGSIEILKLLLSHGARMDV--DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       180 ~~a~~~~~~~~i~~Ll~~g~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      |+|+..++.+++++|++++++...  +..|.||||+|+..++.+++++|+++|++...+..++.++++
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~  230 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG  230 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999999999999998885  677999999999999999999999999999988888777664

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-33  Score=206.01  Aligned_cols=214  Identities=22%  Similarity=0.331  Sum_probs=184.4

Q ss_pred             hhHHHHHHHHHHhhcHHHHHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHH
Q psy599            6 LDEYTHYQAFLEARTHEEIQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAA   85 (247)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~   85 (247)
                      .++.+.++.+++...    ..+...+.+|.||||+|+..|+.+++++|++.+ .++     ......+..|.+++++++.
T Consensus        10 ~g~~~~v~~Ll~~~~----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~g-a~~-----~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_          10 ENEFFKVQELLHSKP----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-ENV-----NLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             HTCHHHHHHHHHHCG----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTC-TTC-----CGGGCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC----CcccccCCCCCCHHHHHHHcCCccccchhhhhh-ccc-----ccccccccccccccccccc
Confidence            344566666665433    246677899999999999999999999999863 222     2224556789999999999


Q ss_pred             cCCHHHHHHHHHhCCCC--CccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHh
Q psy599           86 AGHLPIVQFLVEHGAKV--NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLS  163 (247)
Q Consensus        86 ~~~~~~~~~Ll~~~~~~--~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  163 (247)
                      .+..++++.++..+...  ...+..+.++++.++..++.++++.|+..+...+..+..|+||+|.|+..++.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence            99999999998887654  4456778999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCccccCCCCCcHHHHHHHhCCHHHHHHHHH-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          164 LN-ADMNRKSSKGNTALHDCAEAGSIEILKLLLS-HGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       164 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~-~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      .+ .+++.+|..|.||||+|+..|+.+++++|++ .|++++. +..|+|||++|+   +.+++++|++.|++
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            87 5778999999999999999999999999996 5999997 889999999998   46899999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=209.78  Aligned_cols=163  Identities=28%  Similarity=0.372  Sum_probs=131.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhCCCCCcc----------CCCCChhHHHHHhcCChHHHHHHHHC-CCCcccCCCCCC
Q psy599           75 EGAPPLWCAAAAGHLPIVQFLVEHGAKVNSK----------TRTNSTPLRAACFDGHFGVVKYLVEH-GADFEVSNRHGH  143 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~  143 (247)
                      .+.++++.|+..++...++.++....+++..          ...|.||||+|++.|+.+++++|+++ +++++..+..+.
T Consensus       104 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~  183 (285)
T d1wdya_         104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  183 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred             CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCC
Confidence            4445555555555555555555544333322          23478899999999999999999964 788888888888


Q ss_pred             CHHHHHHH----cChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCCC-CCCCCCHHHHHHHc
Q psy599          144 TCLMIACY----KGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSH-GARMDV-DSYGMTPLLAAAVV  217 (247)
Q Consensus       144 t~l~~a~~----~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~-g~~~~~-~~~g~t~l~~A~~~  217 (247)
                      ++.+.+..    .+...++++|+++|++++.++..|.||||.|+..|+.+++++|+++ |++++. +..|.||||+|++.
T Consensus       184 ~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            88776554    3446789999999999999999999999999999999999999974 889986 88999999999999


Q ss_pred             CCHHHHHHHHhcChhhhhhc
Q psy599          218 GHQHIVEYLIGLNIVSRKEK  237 (247)
Q Consensus       218 ~~~~~~~~Ll~~g~~~~~~~  237 (247)
                      ++.+++++|+++|++++.++
T Consensus       264 ~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         264 KLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             TCHHHHHHHHHHSSCSCCSS
T ss_pred             CCHHHHHHHHHCCCCCCccc
Confidence            99999999999999987764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-32  Score=188.98  Aligned_cols=152  Identities=25%  Similarity=0.362  Sum_probs=145.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHH
Q psy599           78 PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI  157 (247)
Q Consensus        78 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  157 (247)
                      ++||+|+..|+.+++++|+++|++++.++..|.||||+|+ .++.+++++|++++++++..+..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999885 789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC-CCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA-RMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       158 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~-~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      ++.+++.+.+++..+..|.+|++.|+..++.+++++|+++|+ +.+. +..|+||||+|+..++.+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999997 5555 888999999999999999999999987

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.98  E-value=2.6e-30  Score=189.14  Aligned_cols=194  Identities=26%  Similarity=0.314  Sum_probs=170.4

Q ss_pred             HHHHhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC-CC
Q psy599           24 IQMVTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA-KV  102 (247)
Q Consensus        24 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~  102 (247)
                      ..+....|.+|.||||+||.+|+.+++++|++.         +...+..+..+.++++.++..++............ ..
T Consensus        13 ~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~---------g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (209)
T d1ot8a_          13 AELNATMDKTGETSLHLAARFARADAAKRLLDA---------GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL   83 (209)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCT
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh---------cccccccccccccccccccccccccccccccccccccc
Confidence            333344578899999999999999999999986         22335567789999999999999888776665433 23


Q ss_pred             CccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHH
Q psy599          103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDC  182 (247)
Q Consensus       103 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  182 (247)
                      ......+.++.+.+.........+.|...+.+++..+..|.||++.++..+..++++.+++.+.+++..|..|.||||+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          84 NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLA  163 (209)
T ss_dssp             TCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchh
Confidence            34445678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Q psy599          183 AEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL  226 (247)
Q Consensus       183 ~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~L  226 (247)
                      +..|+.+++++|+++|++++. +..|+||||+|++.|+.++|++|
T Consensus       164 ~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         164 AREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999987 88999999999999999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.7e-30  Score=204.52  Aligned_cols=198  Identities=32%  Similarity=0.468  Sum_probs=175.5

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccc-------------------------cccccccCcCCCCHHHHH
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETG-------------------------AVMFDHETVEGAPPLWCA   83 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-------------------------~~~~~~~~~~~~t~l~~A   83 (247)
                      ..+.+|.+||+.|+..|+.+++++|+.++.. ++...                         .......+..+.||+++|
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  238 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  238 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHH
Confidence            3366889999999999999999999987332 22110                         122233455788999999


Q ss_pred             HHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHh
Q psy599           84 AAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLS  163 (247)
Q Consensus        84 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  163 (247)
                      +..++.+++++++..+...+..+..|.+|++.|+..++.+++++|+++|++++..+..+.||+|.++..++.++++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~  318 (408)
T d1n11a_         239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ  318 (408)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             HHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Q psy599          164 LNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLI  227 (247)
Q Consensus       164 ~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll  227 (247)
                      .|++++.+|..|.||||+|++.|+.+++++|+++|++++. +..|+||||+|+..|+.+++++|.
T Consensus       319 ~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999997 899999999999999999998664

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.5e-30  Score=205.91  Aligned_cols=206  Identities=28%  Similarity=0.411  Sum_probs=179.6

Q ss_pred             cCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC--
Q psy599           31 KFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT--  108 (247)
Q Consensus        31 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--  108 (247)
                      +..+.++++.|+..++.+++++|++.         +...+..+..|.+||++|+..|+.+++++|+.+|++++..+..  
T Consensus       129 ~~~~~~~l~~a~~~~~~~~v~~ll~~---------~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  199 (408)
T d1n11a_         129 TKKGFTPLHVAAKYGKVRVAELLLER---------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY  199 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc---------CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCC
Confidence            67789999999999999999999987         2233555677899999999999999999999988877655443  


Q ss_pred             -------------------------------CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHH
Q psy599          109 -------------------------------NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI  157 (247)
Q Consensus       109 -------------------------------~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  157 (247)
                                                     +.+|+++|+..+..++++++...+...+..+..|.||++.|+..++.++
T Consensus       200 t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i  279 (408)
T d1n11a_         200 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV  279 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             CcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHH
Confidence                                           4556666777777777788877777788888889999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhh
Q psy599          158 VKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKE  236 (247)
Q Consensus       158 ~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~  236 (247)
                      +++|+++|++++..+..+.||||.++..+..++++++++.|++++. +..|.||||+|++.|+.+++++|+++|++++.+
T Consensus       280 ~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~  359 (408)
T d1n11a_         280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV  359 (408)
T ss_dssp             HHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            9999999999999999999999999999999999999999999986 889999999999999999999999999999988


Q ss_pred             ccchhhhcc
Q psy599          237 KIDALELLG  245 (247)
Q Consensus       237 ~~~~~~~~~  245 (247)
                      +.++-+.++
T Consensus       360 d~~G~t~L~  368 (408)
T d1n11a_         360 SSDGTTPLA  368 (408)
T ss_dssp             CSSSCCHHH
T ss_pred             CCCCCCHHH
Confidence            888776654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=3.9e-30  Score=197.51  Aligned_cols=189  Identities=28%  Similarity=0.381  Sum_probs=166.2

Q ss_pred             hccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCC
Q psy599           29 KFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRT  108 (247)
Q Consensus        29 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  108 (247)
                      ..+.+|.||||+|+.+|+.+++++|++++..         ....+..+.+|++.++..++.++++.|++.|...+..+..
T Consensus        68 ~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~---------~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~  138 (291)
T d1s70b_          68 YANVDGLTALHQACIDDNVDMVKFLVENGAN---------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE  138 (291)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccCCCCCcHHHHHHhcCCceeeeeecccccc---------cccccccccccccccccccccchhhcccccCccccccccc
Confidence            4478899999999999999999999987322         2444567899999999999999999999999999999999


Q ss_pred             CChhHHHHHhcCChHHHHHHHHC---------------------------CCCcccCCCCCCCHHHHHHHcChHHHHHHH
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEH---------------------------GADFEVSNRHGHTCLMIACYKGHYRIVKYL  161 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~---------------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  161 (247)
                      +.+++++|+..+..+.++.++..                           .......+..|.||+|.|+..|+.+++++|
T Consensus       139 ~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  218 (291)
T d1s70b_         139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL  218 (291)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccc
Confidence            99999999998888888877742                           122344667899999999999999999999


Q ss_pred             HhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcC
Q psy599          162 LSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLN  230 (247)
Q Consensus       162 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g  230 (247)
                      ++.|++++.++..|+||||+|+..|+.+++++|+++|++++. +..|+||||+|+.    +++++|.+..
T Consensus       219 l~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             ccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence            999999999999999999999999999999999999999997 8899999999974    6777777653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.8e-30  Score=178.20  Aligned_cols=150  Identities=25%  Similarity=0.321  Sum_probs=141.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHH
Q psy599           78 PPLWCAAAAGHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYR  156 (247)
Q Consensus        78 t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  156 (247)
                      +.|+.|+..|+.++++.|+.. +.+++.++..|.||||+|+ .++.+++++|++++.+++..+..+.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            358999999999999999986 7899999999999999986 48899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy599          157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGL  229 (247)
Q Consensus       157 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~  229 (247)
                      +++++++++++++.++..|.||||+|+..|+.+++++|+ .|++++. +..|+||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999999999999887 6888886 89999999999999999999999976

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.1e-29  Score=182.66  Aligned_cols=210  Identities=26%  Similarity=0.292  Sum_probs=159.5

Q ss_pred             CCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCCh
Q psy599           32 FGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNST  111 (247)
Q Consensus        32 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  111 (247)
                      .+|.||||+||..|+.+++++|++....     .+..++..|..|.||||+|+..|+.+++++|+++|++.+.....+.+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~-----~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~   75 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQ-----GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   75 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCccCCCCCccceehhccccccccccccccccccccccccccc
Confidence            3799999999999999999999874211     12334667789999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHHCCC----CcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhC
Q psy599          112 PLRAACFDGHFGVVKYLVEHGA----DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADM-NRKSSKGNTALHDCAEAG  186 (247)
Q Consensus       112 ~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~-~~~~~~~~t~l~~a~~~~  186 (247)
                      +++.|...++.++++.+.....    ..+.......++++.+.........+.+.....+. ......+.+|++.|+..+
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~  155 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  155 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhh
Confidence            9999999999998887775422    22334445667777777777777777776655543 334456677777777777


Q ss_pred             CHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhccC
Q psy599          187 SIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       187 ~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  246 (247)
                      ...++++++++|..... +..|.|||++|+..|+.+++++|+++|++++.+..++.++++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         156 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV  216 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             hhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            77777777777776665 6677777777777777777777777777777766666666553

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=177.63  Aligned_cols=153  Identities=25%  Similarity=0.376  Sum_probs=143.6

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHH
Q psy599           36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRA  115 (247)
Q Consensus        36 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  115 (247)
                      ++||.||..|+.+++++|+++         +..++..|..|.||||+|+ .|+.+++++|+++|++++.++..+.++++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~---------g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~   72 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN---------NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHD   72 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS---------CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC---------CCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccc
Confidence            799999999999999999986         2334667789999999886 789999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCC-CccccCCCCCcHHHHHHHhCCHHHHHHH
Q psy599          116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNA-DMNRKSSKGNTALHDCAEAGSIEILKLL  194 (247)
Q Consensus       116 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~i~~L  194 (247)
                      ++..+..+.++.+++++.+++..+..+.+|++.|+..++.+++++|++++. +.+.+|..|.||||+|+..++.+++++|
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999886 7899999999999999999999999999


Q ss_pred             HHcC
Q psy599          195 LSHG  198 (247)
Q Consensus       195 l~~g  198 (247)
                      +++|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            9987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.8e-29  Score=174.09  Aligned_cols=149  Identities=30%  Similarity=0.382  Sum_probs=142.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHH
Q psy599           77 APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYR  156 (247)
Q Consensus        77 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  156 (247)
                      .|||+.|++.|+.+++++|+++|++++ .+..|.||||+|+..++.+++..++.........+..+.++++.++.....+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            489999999999999999999999877 5889999999999999999999999988888888888999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Q psy599          157 IVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYL  226 (247)
Q Consensus       157 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~L  226 (247)
                      +++++..++++.+.++..|.||||+|+..|+.+++++|+++|++++. +..|.|||++|+..|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999997 99999999999999999999976

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-29  Score=176.11  Aligned_cols=152  Identities=26%  Similarity=0.391  Sum_probs=140.9

Q ss_pred             hHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHH
Q psy599           36 TPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRA  115 (247)
Q Consensus        36 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~  115 (247)
                      +.|+.||..|+.+++++|++..+.+        .+..|..|.||||+|+ +++.+++++|++.+.+++..+..|.+|++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~--------~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~   74 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH--------PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC--------TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC--------CCccCCCCCccccccc-cccccccccccccccccccccccccccccc
Confidence            5699999999999999999874433        3566789999999987 588999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q psy599          116 ACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL  195 (247)
Q Consensus       116 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll  195 (247)
                      ++..++.++++++++++++++.++..|.||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        75 ~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_          75 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887 68999999999999999999999999999999


Q ss_pred             Hc
Q psy599          196 SH  197 (247)
Q Consensus       196 ~~  197 (247)
                      ++
T Consensus       154 ~h  155 (156)
T d1bd8a_         154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            76

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.3e-31  Score=202.01  Aligned_cols=201  Identities=25%  Similarity=0.346  Sum_probs=162.6

Q ss_pred             chHHHHHHhc-CcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHH--------HHhCCCCCcc
Q psy599           35 ATPLIMACRN-GHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFL--------VEHGAKVNSK  105 (247)
Q Consensus        35 ~t~L~~A~~~-g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L--------l~~~~~~~~~  105 (247)
                      +||||+++.. |...+.+.|.+. ..+         ...+..|.||||+|+..|+.++++.|        ++.|++++.+
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~-~~n---------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~   70 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRE-SVN---------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM   70 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTT-TTT---------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhc-CCC---------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc
Confidence            4788876665 555555444432 111         11223599999999999999988776        4668999999


Q ss_pred             CCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcC-----CC-------------
Q psy599          106 TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLN-----AD-------------  167 (247)
Q Consensus       106 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-----~~-------------  167 (247)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|.||++.|+..++.++++++...+     .+             
T Consensus        71 d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  150 (277)
T d2fo1e1          71 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  150 (277)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHH
Confidence            999999999999999999999999999999999999999999999999998888775421     00             


Q ss_pred             -----------------------------ccccCCCCCcHHHHHHHhCCHHHHHHHH-HcCCCCCC-CCCCCCHHHHHHH
Q psy599          168 -----------------------------MNRKSSKGNTALHDCAEAGSIEILKLLL-SHGARMDV-DSYGMTPLLAAAV  216 (247)
Q Consensus       168 -----------------------------~~~~~~~~~t~l~~a~~~~~~~~i~~Ll-~~g~~~~~-~~~g~t~l~~A~~  216 (247)
                                                   .+..+..|.||||.++..++.+++++++ ..+.+.+. +..|.||||+|+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~  230 (277)
T d2fo1e1         151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  230 (277)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             HhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHH
Confidence                                         1234457899999999999999998755 56666665 8889999999999


Q ss_pred             cCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          217 VGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       217 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      .|+.+++++|+++|++.+.++.++-+.++
T Consensus       231 ~g~~~iv~~Ll~~gadin~~d~~G~T~L~  259 (277)
T d2fo1e1         231 EGRIEVVMYLIQQGASVEAVDATDHTARQ  259 (277)
T ss_dssp             HTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             cCCHHHHHHHHHCcCCCCCcCCCCCCHHH
Confidence            99999999999999999888877766654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-30  Score=190.42  Aligned_cols=172  Identities=22%  Similarity=0.257  Sum_probs=151.8

Q ss_pred             CCCCHHHHHHHcCCH----HHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy599           75 EGAPPLWCAAAAGHL----PIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIAC  150 (247)
Q Consensus        75 ~~~t~l~~A~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  150 (247)
                      +|.||||+|+..|+.    ++++.+...+.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||++.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            489999999999986    4556677789999999999999999999999999999999999999999999999999999


Q ss_pred             HcChHHHHHHHHhcCCCc------cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCHHH
Q psy599          151 YKGHYRIVKYLLSLNADM------NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV--DSYGMTPLLAAAVVGHQHI  222 (247)
Q Consensus       151 ~~~~~~~~~~Ll~~~~~~------~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~--~~~g~t~l~~A~~~~~~~~  222 (247)
                      ..++.++++.++..+...      ......|.||||.|+..++.+++++|++.|+.++.  +..|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            999999999999876542      33445688999999999999999999999999875  5679999999999999999


Q ss_pred             HHHHHhcChhhhhhccchhhhccC
Q psy599          223 VEYLIGLNIVSRKEKIDALELLGA  246 (247)
Q Consensus       223 ~~~Ll~~g~~~~~~~~~~~~~~~~  246 (247)
                      +++|+++|++...+..++.++++-
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             HHHHHhcCCcccccCCCCCCHHHH
Confidence            999999999999999988887764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.8e-28  Score=169.67  Aligned_cols=150  Identities=27%  Similarity=0.431  Sum_probs=139.2

Q ss_pred             chHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHH
Q psy599           35 ATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLR  114 (247)
Q Consensus        35 ~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~  114 (247)
                      .|||+.||+.|+.+++++|++++. ++        . .+..|.||||+|+..++.++++.++............+.++++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga-~~--------~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGA-PF--------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC-CC--------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCC-Cc--------c-cccCCCccccccccccccccccccccccccccccccccccccc
Confidence            499999999999999999999732 21        2 4678999999999999999999999988877777888889999


Q ss_pred             HHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHH
Q psy599          115 AACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLL  194 (247)
Q Consensus       115 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~L  194 (247)
                      .++...+.++++++..++.+++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999976

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.3e-30  Score=204.67  Aligned_cols=197  Identities=17%  Similarity=0.158  Sum_probs=155.6

Q ss_pred             HHHHhhccCCCchHHHHHHhcCcHHHHHHH---HHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy599           24 IQMVTKFKFGGATPLIMACRNGHKEIVEYL---VKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGA  100 (247)
Q Consensus        24 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~~l---l~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~  100 (247)
                      ...+...+..|.|||++||.+|+.++++++   ++.         +...+..+..|.||||+|+..|+.+++++|++.|+
T Consensus        80 ~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~---------~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~  150 (346)
T d2ajaa1          80 WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS---------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP  150 (346)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C---------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT
T ss_pred             hhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC---------CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            345556678899999999999999888774   443         33446677789999999999999999999999999


Q ss_pred             CCCccC--CCCChhHHHHHhcCChHHHHHHHHCCCCcc---cCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccc-----
Q psy599          101 KVNSKT--RTNSTPLRAACFDGHFGVVKYLVEHGADFE---VSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNR-----  170 (247)
Q Consensus       101 ~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~-----  170 (247)
                      +++..+  ..|.||||+|+..|+.+++++|++.+.+..   ..+..+.||++.|+..|+.+++++|++.|++++.     
T Consensus       151 ~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~  230 (346)
T d2ajaa1         151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE  230 (346)
T ss_dssp             TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCT
T ss_pred             CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHH
Confidence            998775  358999999999999999999999987653   3344567888889999999999999987643211     


Q ss_pred             ----------------------------cCCC----------------CCcHHHHHHHhCCHHHHHHHHHcCCCCC----
Q psy599          171 ----------------------------KSSK----------------GNTALHDCAEAGSIEILKLLLSHGARMD----  202 (247)
Q Consensus       171 ----------------------------~~~~----------------~~t~l~~a~~~~~~~~i~~Ll~~g~~~~----  202 (247)
                                                  ....                +.++++.|+..+..+++++|++.+....    
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~  310 (346)
T d2ajaa1         231 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT  310 (346)
T ss_dssp             TTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSC
T ss_pred             HHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhccc
Confidence                                        0011                1256777888889999999998876432    


Q ss_pred             -C-CCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy599          203 -V-DSYGMTPLLAAAVVGHQHIVEYLIGL  229 (247)
Q Consensus       203 -~-~~~g~t~l~~A~~~~~~~~~~~Ll~~  229 (247)
                       . ...|.||||+|++.|+.+++++|++.
T Consensus       311 ~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         311 ATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             ccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence             1 34688999999999999999999975

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-26  Score=175.96  Aligned_cols=131  Identities=32%  Similarity=0.445  Sum_probs=119.1

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCccCCCCChhHHHHHhcC----ChHHHHHHHHCCCCcccCCCCCCCHHH
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEH-GAKVNSKTRTNSTPLRAACFDG----HFGVVKYLVEHGADFEVSNRHGHTCLM  147 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~t~l~  147 (247)
                      ...|.||||+|++.|+.+++++|++. |++++..+..+.++...+...+    ...++++|+++|++++.++..|.||||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~  224 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccc
Confidence            34589999999999999999999975 7899999998888877765543    357999999999999999999999999


Q ss_pred             HHHHcChHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC
Q psy599          148 IACYKGHYRIVKYLLSL-NADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV  203 (247)
Q Consensus       148 ~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~  203 (247)
                      .|+..++.+++++|++. |++++.+|..|.||||+|++.|+.+++++|+++|++++.
T Consensus       225 ~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             hhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            99999999999999974 889999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-27  Score=159.59  Aligned_cols=119  Identities=23%  Similarity=0.255  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCC-CHHHHHHHcCh
Q psy599           76 GAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGH-TCLMIACYKGH  154 (247)
Q Consensus        76 ~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~  154 (247)
                      +.++||+|+..|+.+++++|+++|++++.++..|.+|+|+|+ .|+.+++++|+++|++++..+..+. ||||.|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            345667777777777777777766666666666666666553 5666666666666666666655543 46666666666


Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q psy599          155 YRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLL  195 (247)
Q Consensus       155 ~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll  195 (247)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            66666666666666666666666666666666666666655

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=159.33  Aligned_cols=119  Identities=29%  Similarity=0.435  Sum_probs=112.0

Q ss_pred             CChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCC-cHHHHHHHhCC
Q psy599          109 NSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGN-TALHDCAEAGS  187 (247)
Q Consensus       109 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~  187 (247)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999999999999999999775 7899999999999999999988776 69999999999


Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh
Q psy599          188 IEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIG  228 (247)
Q Consensus       188 ~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~  228 (247)
                      .+++++|+++|++++. +..|+|||++|+..|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999997 8999999999999999999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.6e-26  Score=167.65  Aligned_cols=190  Identities=26%  Similarity=0.295  Sum_probs=166.9

Q ss_pred             HHHHHHHHHhcccCccccccccccc-cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHH
Q psy599           47 KEIVEYLVKECKADVEETGAVMFDH-ETVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVV  125 (247)
Q Consensus        47 ~~~~~~ll~~~~~~~~~~~~~~~~~-~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  125 (247)
                      .+++++|++++         ..++. .|..|.||||+|+.+|+.+++++|+..|+.++.++..+.++++.++..++....
T Consensus         2 ~~~v~~Ll~~g---------~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~   72 (209)
T d1ot8a_           2 AQVISDLLAQG---------AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVF   72 (209)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCC---------CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            47899999982         22232 467899999999999999999999999999999999999999999999998877


Q ss_pred             HHHHHCCC-CcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCCC-
Q psy599          126 KYLVEHGA-DFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGARMDV-  203 (247)
Q Consensus       126 ~~Ll~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~~-  203 (247)
                      ........ ........+.++.+.+.........+.|...+.+++..+..|.|||+.++..+..++++.+++++.+++. 
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~  152 (209)
T d1ot8a_          73 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ  152 (209)
T ss_dssp             HHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccc
Confidence            76665443 2334455688899999999999999999999999999999999999999999999999999999999987 


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          204 DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       204 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      +..|.||||+|+..|+.+++++|+++|++...++.++.++++
T Consensus       153 d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~  194 (209)
T d1ot8a_         153 DDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRD  194 (209)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            888999999999999999999999999999888877776654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9e-26  Score=165.81  Aligned_cols=189  Identities=22%  Similarity=0.280  Sum_probs=163.3

Q ss_pred             HhhccCCCchHHHHHHhcCcHHHHHHHHHhcccCccccccccccccCcCCCCHHHHHHHcCCHHHHHHHHHhCCC----C
Q psy599           27 VTKFKFGGATPLIMACRNGHKEIVEYLVKECKADVEETGAVMFDHETVEGAPPLWCAAAAGHLPIVQFLVEHGAK----V  102 (247)
Q Consensus        27 ~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~----~  102 (247)
                      +...+..|.||||+|+..|+.+++++|++.+         ...+.....+.++++.|...++.++++.+......    .
T Consensus        33 in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g---------a~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  103 (228)
T d1k1aa_          33 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAG---------ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL  103 (228)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT
T ss_pred             CCccCCCCCccceehhccccccccccccccc---------ccccccccccccccccccccccccchhhhhhccccccccc
Confidence            3456788999999999999999999999872         22344556788999999999999999988775432    3


Q ss_pred             CccCCCCChhHHHHHhcCChHHHHHHHHCCCCcc-cCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy599          103 NSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFE-VSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHD  181 (247)
Q Consensus       103 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~-~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  181 (247)
                      +.......++++.+...........|.....+.. .....+.++++.|+..+...+++++++.+...+.++..|.||||+
T Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~  183 (228)
T d1k1aa_         104 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS  183 (228)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             cccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHH
Confidence            4445567889999999999999999988766543 445578999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHH
Q psy599          182 CAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVE  224 (247)
Q Consensus       182 a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~  224 (247)
                      |+..|+.+++++|+++|++++. +..|.||||+|+.+|+.+++|
T Consensus       184 A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999997 899999999999999999885

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=9.4e-28  Score=159.27  Aligned_cols=104  Identities=31%  Similarity=0.362  Sum_probs=52.7

Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      |||++|++.|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            34455555555555555555544444444445555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHcCCCCCC-CCCCCCHHHHH
Q psy599          191 LKLLLSHGARMDV-DSYGMTPLLAA  214 (247)
Q Consensus       191 i~~Ll~~g~~~~~-~~~g~t~l~~A  214 (247)
                      +++|+++|++++. +..|.|||++|
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhcccccceeeCCCCCCHHHHH
Confidence            5555555555543 44455555444

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.7e-26  Score=154.13  Aligned_cols=119  Identities=27%  Similarity=0.375  Sum_probs=94.0

Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEI  190 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  190 (247)
                      ++|+.|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            46777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCC--CCCCCCHHHHH--HHcCCHHHHHHHHhc
Q psy599          191 LKLLLSHGARMDV--DSYGMTPLLAA--AVVGHQHIVEYLIGL  229 (247)
Q Consensus       191 i~~Ll~~g~~~~~--~~~g~t~l~~A--~~~~~~~~~~~Ll~~  229 (247)
                      +++|+++|++++.  +..+.||+.++  ...|+.+++++|++.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            8888888888774  34577776655  456778888888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.8e-27  Score=157.88  Aligned_cols=107  Identities=33%  Similarity=0.430  Sum_probs=104.1

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHH
Q psy599           77 APPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYR  156 (247)
Q Consensus        77 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~  156 (247)
                      .|||++|++.|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++.++..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHH
Q psy599          157 IVKYLLSLNADMNRKSSKGNTALHDCA  183 (247)
Q Consensus       157 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~  183 (247)
                      ++++|+++|++++.+|..|.||||+|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999884

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-26  Score=153.60  Aligned_cols=122  Identities=22%  Similarity=0.300  Sum_probs=112.6

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcChHHH
Q psy599           78 PPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGHYRI  157 (247)
Q Consensus        78 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  157 (247)
                      ++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++++++++..|..|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccCC-CCCcHHHHH--HHhCCHHHHHHHHHcCC
Q psy599          158 VKYLLSLNADMNRKSS-KGNTALHDC--AEAGSIEILKLLLSHGA  199 (247)
Q Consensus       158 ~~~Ll~~~~~~~~~~~-~~~t~l~~a--~~~~~~~~i~~Ll~~g~  199 (247)
                      +++|+++|++++..+. .+.||++.+  ...|+.+++++|+..+.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999999987764 588887665  56788999999997643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.2e-25  Score=170.68  Aligned_cols=140  Identities=22%  Similarity=0.303  Sum_probs=105.7

Q ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCCccCCCCChhHHHHHhcCC-------hHHHHHHHHCCCCcccCCCCCCCH
Q psy599           73 TVEGAPPLWCAAAAGHLPIVQFLVEHGAKVNSKTRTNSTPLRAACFDGH-------FGVVKYLVEHGADFEVSNRHGHTC  145 (247)
Q Consensus        73 ~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-------~~~~~~Ll~~~~~~~~~~~~~~t~  145 (247)
                      |..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++       .++++++..   .+...+..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCCH
Confidence            7889999999999999999999999999999999999999999998764       245555543   456678889999


Q ss_pred             HHHHHHcCh----HH--------HHHHHHhcCCC-------------------------------------ccccCCCCC
Q psy599          146 LMIACYKGH----YR--------IVKYLLSLNAD-------------------------------------MNRKSSKGN  176 (247)
Q Consensus       146 l~~a~~~~~----~~--------~~~~Ll~~~~~-------------------------------------~~~~~~~~~  176 (247)
                      +|.++..+.    ..        ++.++...+..                                     ++.+|..|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence            998876433    22        23344443222                                     455667777


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHH
Q psy599          177 TALHDCAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAA  215 (247)
Q Consensus       177 t~l~~a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~  215 (247)
                      ||||+|++.|+.+++++|+++|++++. +..|.|||++|+
T Consensus       261 TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         261 TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            777777777777777777777777776 677777777764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=5.3e-24  Score=147.07  Aligned_cols=120  Identities=19%  Similarity=0.236  Sum_probs=65.9

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCcc------CCCCChhHHHHHhc---CChHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy599           80 LWCAAAAGHLPIVQFLVEHGAKVNSK------TRTNSTPLRAACFD---GHFGVVKYLVEHGADFEVSNRHGHTCLMIAC  150 (247)
Q Consensus        80 l~~A~~~~~~~~~~~Ll~~~~~~~~~------~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  150 (247)
                      |..|++.++...+..++..|.+++.+      +..|.||||+|++.   +..+++++|+++|++++.++..|.||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            44556666666666666665554432      33455555555543   3445555555555555555555555555555


Q ss_pred             HcChHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q psy599          151 YKGHYRIVKYLLSLNADMNRKSSKGNTALHDCAEAGSIEILKLLLSHGA  199 (247)
Q Consensus       151 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~  199 (247)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+.
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            5555555555555555555555555555555555555555555555443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1e-23  Score=145.64  Aligned_cols=122  Identities=27%  Similarity=0.344  Sum_probs=110.3

Q ss_pred             hhHHHHHhcCChHHHHHHHHCCCCcccC------CCCCCCHHHHHHHc---ChHHHHHHHHhcCCCccccCCCCCcHHHH
Q psy599          111 TPLRAACFDGHFGVVKYLVEHGADFEVS------NRHGHTCLMIACYK---GHYRIVKYLLSLNADMNRKSSKGNTALHD  181 (247)
Q Consensus       111 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~------~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  181 (247)
                      ..|..|++.++...+..++..|.++...      +..|+||||+|+..   +..+++++|+++|++++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            4678899999999999999888776543      66789999999974   67899999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChh
Q psy599          182 CAEAGSIEILKLLLSHGARMDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIV  232 (247)
Q Consensus       182 a~~~~~~~~i~~Ll~~g~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~  232 (247)
                      |+..|+.+++++|+++|++++. +..|+||||+|+..|+.+++++|++.+..
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999987 89999999999999999999999986653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=3.3e-26  Score=179.43  Aligned_cols=134  Identities=16%  Similarity=0.181  Sum_probs=112.2

Q ss_pred             ccccCcCCCCHHHHHHHcCCHHHHHH---HHHhCCCCCccCCCCChhHHHHHhcCChHHHHHHHHCCCCcccCC--CCCC
Q psy599           69 FDHETVEGAPPLWCAAAAGHLPIVQF---LVEHGAKVNSKTRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSN--RHGH  143 (247)
Q Consensus        69 ~~~~~~~~~t~l~~A~~~~~~~~~~~---Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--~~~~  143 (247)
                      +..++..|.|+|++|+..|+.+++++   |++.|++++.++..|.||||+|++.|+.+++++|+++|++++..+  ..|.
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            34556688999999999999887765   788999999999999999999999999999999999999987765  3589


Q ss_pred             CHHHHHHHcChHHHHHHHHhcCCCc---cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCC
Q psy599          144 TCLMIACYKGHYRIVKYLLSLNADM---NRKSSKGNTALHDCAEAGSIEILKLLLSHGARMD  202 (247)
Q Consensus       144 t~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~i~~Ll~~g~~~~  202 (247)
                      ||||+|+..|+.+++++|++.|.+.   +..+..+.||++.|+..|+.+++++|+++|++++
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            9999999999999999999998764   3344556788888999999999999999988764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.2e-22  Score=154.70  Aligned_cols=145  Identities=23%  Similarity=0.280  Sum_probs=117.6

Q ss_pred             hCCCCCcc-CCCCChhHHHHHhcCChHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCh-------HHHHHHHHhcCCCcc
Q psy599           98 HGAKVNSK-TRTNSTPLRAACFDGHFGVVKYLVEHGADFEVSNRHGHTCLMIACYKGH-------YRIVKYLLSLNADMN  169 (247)
Q Consensus        98 ~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~Ll~~~~~~~  169 (247)
                      .+.+++.. |..|.||||+|+..|+.+++++|+++|++++.++..|+||||.|+..++       .++++++.   ..+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhh
Confidence            46677765 8899999999999999999999999999999999999999999998765       24444443   3456


Q ss_pred             ccCCCCCcHHHHHHHhCC----HH--------HHHHHHHcCCC-------------------------------------
Q psy599          170 RKSSKGNTALHDCAEAGS----IE--------ILKLLLSHGAR-------------------------------------  200 (247)
Q Consensus       170 ~~~~~~~t~l~~a~~~~~----~~--------~i~~Ll~~g~~-------------------------------------  200 (247)
                      .+|..|+||||.++..+.    ..        ++.++.+.+..                                     
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            778889999998887553    22        33445444433                                     


Q ss_pred             CCC-CCCCCCHHHHHHHcCCHHHHHHHHhcChhhhhhccchhhhcc
Q psy599          201 MDV-DSYGMTPLLAAAVVGHQHIVEYLIGLNIVSRKEKIDALELLG  245 (247)
Q Consensus       201 ~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  245 (247)
                      ++. +..|+||||+|++.|+.+++++|++.|+++..+...+.+.+.
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD  297 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            233 678999999999999999999999999999999998888765