Psyllid ID: psy6019

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSEV
Secondary Structure (PSIPRED)
cccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEcccccEEEEEccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHHcccccHEEEEHHHcccccEEEEEEc
Coil and Loop (DISEMBL)
madlslvgcynmsaMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYepemgkvirgdksgvqkvrakeivpgdivevsev
Flexible Loop (DISEMBL)
madlslvgCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKeyepemgkvirgdksgvqkvrakeivpgdivevsev
Low Complexity Region (SEG)
MADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSEV
Disordered region (IsUnstruct)
******VGCY*********************LASMAYFALTEY**************************************************
Disordered Region (DISOPRED)
MADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKER*******ALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSEV
Disordered Region (DISEMBL)
MADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSEV
Disordered Region (DISPRO)
*ADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSEV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSEV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q7PPA5	1018	Calcium-transporting ATPa	yes	N/A	0.569	0.052	0.849	1e-19
Q292Q0	1002	Calcium-transporting ATPa	yes	N/A	0.569	0.052	0.830	2e-18
P22700	1020	Calcium-transporting ATPa	yes	N/A	0.569	0.051	0.811	3e-18
Q9YGL9	1042	Sarcoplasmic/endoplasmic	yes	N/A	0.569	0.050	0.754	2e-17
Q64518	1038	Sarcoplasmic/endoplasmic	yes	N/A	0.569	0.051	0.735	6e-17
P35316	1003	Calcium-transporting ATPa	N/A	N/A	0.569	0.052	0.698	1e-16
P18596	1061	Sarcoplasmic/endoplasmic	yes	N/A	0.569	0.049	0.735	2e-16
Q93084	1043	Sarcoplasmic/endoplasmic	yes	N/A	0.569	0.050	0.735	2e-16
P70083	996	Sarcoplasmic/endoplasmic	N/A	N/A	0.569	0.053	0.698	4e-15
P11607	1042	Sarcoplasmic/endoplasmic	yes	N/A	0.569	0.050	0.660	1e-14

>sp|Q7PPA5|ATC1_ANOGA Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Anopheles gambiae GN=Ca-P60A PE=2 SV=5

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIRGDKSGVQK+RAKEIVPGD+VEVS
Sbjct: 101 AVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVS 153

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
Anopheles gambiae (taxid: 7165)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8

>sp|Q292Q0|ATC1_DROPS Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila pseudoobscura pseudoobscura GN=Ca-P60A PE=3 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 48/53 (90%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIR DKSG+QKVRAKEIVPGD+VEVS
Sbjct: 102 AVVGVWQERNAESAIEALKEYEPEMGKVIRQDKSGIQKVRAKEIVPGDLVEVS 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P22700|ATC1_DROME Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila melanogaster GN=Ca-P60A PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/53 (81%), Positives = 48/53 (90%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKV+R DKSG+QKVRAKEIVPGD+VEVS
Sbjct: 102 AVVGVWQERNAESAIEALKEYEPEMGKVVRQDKSGIQKVRAKEIVPGDLVEVS 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q9YGL9|AT2A3_CHICK Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Gallus gallus GN=ATP2A3 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 48/53 (90%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIR D+SGVQ++RA++IVPGDIVEV+
Sbjct: 102 AVVGVWQERNAESAIEALKEYEPEMGKVIRADRSGVQRIRARDIVPGDIVEVA 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q64518|AT2A3_MOUSE Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Mus musculus GN=Atp2a3 PE=2 SV=3

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P35316|ATC_ARTSF Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia franciscana PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 48/53 (90%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +E+NAESAIEALKEYEPEMGKVIR DK+G+QK++A+++VPGDIVE+S
Sbjct: 105 AVVGVWQEKNAESAIEALKEYEPEMGKVIRADKTGIQKIKARDLVPGDIVEIS 157

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium.

Artemia franciscana (taxid: 6661)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P18596|AT2A3_RAT Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Rattus norvegicus GN=Atp2a3 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of the calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|Q93084|AT2A3_HUMAN Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Homo sapiens GN=ATP2A3 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. Transports calcium ions from the cytosol into the sarcoplasmic/endoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P70083|AT2A1_MAKNI Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Makaira nigricans GN=atp2a1 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 44/53 (83%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE AIEALKEYEPEMGKV R D+  VQ+++A+EIVPGDIVEVS
Sbjct: 102 AIVGVWQERNAEDAIEALKEYEPEMGKVYRSDRKSVQRIKAREIVPGDIVEVS 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction.

Makaira nigricans (taxid: 13604)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

>sp|P11607|AT2A2_PIG Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Sus scrofa GN=ATP2A2 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++AK+IVPGDIVE++
Sbjct: 102 AIVGVWQERNAENAIEALKEYEPEMGKVYRQDRKSVQRIKAKDIVPGDIVEIA 154

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Isoform SERCA2A is involved in the regulation of the contraction/relaxation cycle.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
357615523	1025	sarco/endoplasmic reticulum calcium ATPa	0.569	0.051	0.849	5e-18
4191598	1000	sarco(endo)plasmic reticulum-type calciu	0.569	0.053	0.849	5e-18
157113755	1019	calcium-transporting atpase sarcoplasmic	0.505	0.046	0.957	5e-18
158295513	1018	AGAP006186-PE [Anopheles gambiae str. PE	0.569	0.052	0.849	5e-18
158295517	1001	AGAP006186-PB [Anopheles gambiae str. PE	0.569	0.052	0.849	5e-18
157113751	998	calcium-transporting atpase sarcoplasmic	0.505	0.047	0.957	5e-18
158295519	998	AGAP006186-PA [Anopheles gambiae str. PE	0.569	0.053	0.849	5e-18
170066650	995	calcium-transporting atpase sarcoplasmic	0.505	0.047	0.957	6e-18
157113753	999	calcium-transporting atpase sarcoplasmic	0.505	0.047	0.957	6e-18
328718401	1005	PREDICTED: calcium-transporting ATPase s	0.569	0.052	0.830	7e-18

>gi|357615523|gb|EHJ69709.1| sarco/endoplasmic reticulum calcium ATPase [Danaus plexippus]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKV+RGDKSGVQK+RAKEIVPGDIVEVS
Sbjct: 102 AVVGVWQERNAESAIEALKEYEPEMGKVVRGDKSGVQKIRAKEIVPGDIVEVS 154

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|4191598|gb|AAD09820.1| sarco(endo)plasmic reticulum-type calcium ATPase [Heliothis virescens]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIRGDKSGVQK+RAKEIVPGD+VEVS
Sbjct: 102 AVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVS 154

Source: Heliothis virescens

Species: Heliothis virescens

Genus: Heliothis

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113755|ref|XP_001652086.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type (calcium pump) [Aedes aegypti] gi|108877604|gb|EAT41829.1| AAEL006582-PC [Aedes aegypti]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 45  KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           +ERNAESAIEALKEYEPEMGKV+RGDKSGVQKVRAKEIVPGDIVEVS
Sbjct: 107 QERNAESAIEALKEYEPEMGKVVRGDKSGVQKVRAKEIVPGDIVEVS 153

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295513|ref|XP_316251.4| AGAP006186-PE [Anopheles gambiae str. PEST] gi|158295515|ref|XP_001688815.1| AGAP006186-PC [Anopheles gambiae str. PEST] gi|158295521|ref|XP_001688818.1| AGAP006186-PD [Anopheles gambiae str. PEST] gi|166215094|sp|Q7PPA5.5|ATC1_ANOGA RecName: Full=Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type; AltName: Full=Calcium pump gi|157016074|gb|EAA10790.5| AGAP006186-PE [Anopheles gambiae str. PEST] gi|157016075|gb|EDO63821.1| AGAP006186-PC [Anopheles gambiae str. PEST] gi|157016078|gb|EDO63824.1| AGAP006186-PD [Anopheles gambiae str. PEST]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIRGDKSGVQK+RAKEIVPGD+VEVS
Sbjct: 101 AVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVS 153

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295517|ref|XP_001688816.1| AGAP006186-PB [Anopheles gambiae str. PEST] gi|157016076|gb|EDO63822.1| AGAP006186-PB [Anopheles gambiae str. PEST]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIRGDKSGVQK+RAKEIVPGD+VEVS
Sbjct: 101 AVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVS 153

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113751|ref|XP_001652084.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type (calcium pump) [Aedes aegypti] gi|108877602|gb|EAT41827.1| AAEL006582-PA [Aedes aegypti]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 45  KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           +ERNAESAIEALKEYEPEMGKV+RGDKSGVQKVRAKEIVPGDIVEVS
Sbjct: 107 QERNAESAIEALKEYEPEMGKVVRGDKSGVQKVRAKEIVPGDIVEVS 153

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295519|ref|XP_001688817.1| AGAP006186-PA [Anopheles gambiae str. PEST] gi|157016077|gb|EDO63823.1| AGAP006186-PA [Anopheles gambiae str. PEST]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/53 (84%), Positives = 49/53 (92%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKVIRGDKSGVQK+RAKEIVPGD+VEVS
Sbjct: 101 AVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVS 153

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170066650|ref|XP_001868188.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type [Culex quinquefasciatus] gi|167862914|gb|EDS26297.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type [Culex quinquefasciatus]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 45  KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           +ERNAESAIEALKEYEPEMGKV+RGDKSGVQKVRAKEIVPGDIVEVS
Sbjct: 101 QERNAESAIEALKEYEPEMGKVVRGDKSGVQKVRAKEIVPGDIVEVS 147

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113753|ref|XP_001652085.1| calcium-transporting atpase sarcoplasmic/endoplasmic reticulum type (calcium pump) [Aedes aegypti] gi|108877603|gb|EAT41828.1| AAEL006582-PB [Aedes aegypti]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/47 (95%), Positives = 47/47 (100%)

Query: 45  KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           +ERNAESAIEALKEYEPEMGKV+RGDKSGVQKVRAKEIVPGDIVEVS
Sbjct: 107 QERNAESAIEALKEYEPEMGKVVRGDKSGVQKVRAKEIVPGDIVEVS 153

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718401|ref|XP_001943129.2| PREDICTED: calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like isoform 1 [Acyrthosiphon pisum] gi|328718403|ref|XP_003246477.1| PREDICTED: calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type-like isoform 2 [Acyrthosiphon pisum]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 49/53 (92%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAESAIEALKEYEPEMGKV+RGDKSGVQK+RAKEIVPGDIVE+S
Sbjct: 105 AVVGVWQERNAESAIEALKEYEPEMGKVVRGDKSGVQKIRAKEIVPGDIVEIS 157

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
UNIPROTKB|Q292Q0	1002	Ca-P60A "Calcium-transporting	0.505	0.046	0.914	2.6e-16
FB|FBgn0263006	1020	Ca-P60A "Calcium ATPase at 60A	0.505	0.046	0.893	3.4e-16
UNIPROTKB|F1P143	1013	ATP2A3 "Sarcoplasmic/endoplasm	0.505	0.046	0.829	3.9e-15
UNIPROTKB|Q9YGL9	1042	ATP2A3 "Sarcoplasmic/endoplasm	0.505	0.045	0.829	4.1e-15
UNIPROTKB|F1NNV0	1045	ATP2A3 "Sarcoplasmic/endoplasm	0.505	0.044	0.829	4.1e-15
UNIPROTKB|J9P2B9	1001	ATP2A3 "Uncharacterized protei	0.569	0.052	0.735	8.1e-15
MGI|MGI:1194503	1038	Atp2a3 "ATPase, Ca++ transport	0.569	0.051	0.735	8.5e-15
UNIPROTKB|Q93084	1043	ATP2A3 "Sarcoplasmic/endoplasm	0.569	0.050	0.735	8.5e-15
UNIPROTKB|E2RQY6	1046	ATP2A3 "Uncharacterized protei	0.569	0.050	0.735	8.6e-15
RGD|2175	1061	Atp2a3 "ATPase, Ca++ transport	0.569	0.049	0.735	8.7e-15

UNIPROTKB|Q292Q0 Ca-P60A "Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 215 (80.7 bits), Expect = 2.6e-16, P = 2.6e-16
 Identities = 43/47 (91%), Positives = 46/47 (97%)

Query:    45 KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             +ERNAESAIEALKEYEPEMGKVIR DKSG+QKVRAKEIVPGD+VEVS
Sbjct:   108 QERNAESAIEALKEYEPEMGKVIRQDKSGIQKVRAKEIVPGDLVEVS 154

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0016529 "sarcoplasmic reticulum" evidence=ISS

FB|FBgn0263006 Ca-P60A "Calcium ATPase at 60A" [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 42/47 (89%), Positives = 46/47 (97%)

Query:    45 KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             +ERNAESAIEALKEYEPEMGKV+R DKSG+QKVRAKEIVPGD+VEVS
Sbjct:   108 QERNAESAIEALKEYEPEMGKVVRQDKSGIQKVRAKEIVPGDLVEVS 154

GO:0005783 "endoplasmic reticulum" evidence=ISS;IDA

GO:0005388 "calcium-transporting ATPase activity" evidence=ISS;NAS

GO:0005789 "endoplasmic reticulum membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0016529 "sarcoplasmic reticulum" evidence=NAS

GO:0006816 "calcium ion transport" evidence=IEA;NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051282 "regulation of sequestering of calcium ion" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005811 "lipid particle" evidence=IDA

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0030322 "stabilization of membrane potential" evidence=IGI

GO:0007629 "flight behavior" evidence=IGI

UNIPROTKB|F1P143 ATP2A3 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 3" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 39/47 (82%), Positives = 46/47 (97%)

Query:    45 KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             +ERNAESAIEALKEYEPEMGKVIR D+SGVQ++RA++IVPGDIVEV+
Sbjct:   122 QERNAESAIEALKEYEPEMGKVIRADRSGVQRIRARDIVPGDIVEVA 168

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9YGL9 ATP2A3 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 3" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 39/47 (82%), Positives = 46/47 (97%)

Query:    45 KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             +ERNAESAIEALKEYEPEMGKVIR D+SGVQ++RA++IVPGDIVEV+
Sbjct:   108 QERNAESAIEALKEYEPEMGKVIRADRSGVQRIRARDIVPGDIVEVA 154

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0033017 "sarcoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F1NNV0 ATP2A3 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 3" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 39/47 (82%), Positives = 46/47 (97%)

Query:    45 KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             +ERNAESAIEALKEYEPEMGKVIR D+SGVQ++RA++IVPGDIVEV+
Sbjct:   111 QERNAESAIEALKEYEPEMGKVIRADRSGVQRIRARDIVPGDIVEVA 157

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

UNIPROTKB|J9P2B9 ATP2A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query:    39 ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct:   102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

MGI|MGI:1194503 Atp2a3 "ATPase, Ca++ transporting, ubiquitous" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 8.5e-15, P = 8.5e-15
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query:    39 ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct:   102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q93084 ATP2A3 "Sarcoplasmic/endoplasmic reticulum calcium ATPase 3" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 8.5e-15, P = 8.5e-15
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query:    39 ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct:   102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0033017 "sarcoplasmic reticulum membrane" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006816 "calcium ion transport" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0031095 "platelet dense tubular network membrane" evidence=TAS

GO:0034220 "ion transmembrane transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E2RQY6 ATP2A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 201 (75.8 bits), Expect = 8.6e-15, P = 8.6e-15
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query:    39 ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct:   102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA

RGD|2175 Atp2a3 "ATPase, Ca++ transporting, ubiquitous" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 8.7e-15, P = 8.7e-15
 Identities = 39/53 (73%), Positives = 47/53 (88%)

Query:    39 ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
             A+    +ERNAESAIEALKEYEPEMGKVIR D+ GVQ++RA++IVPGDIVEV+
Sbjct:   102 AIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVA 154

GO:0005388 "calcium-transporting ATPase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA;TAS

GO:0006816 "calcium ion transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0031965 "nuclear membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9YGL9	AT2A3_CHICK	3, ., 6, ., 3, ., 8	0.7547	0.5698	0.0508	yes	N/A
Q93084	AT2A3_HUMAN	3, ., 6, ., 3, ., 8	0.7358	0.5698	0.0508	yes	N/A
P18596	AT2A3_RAT	3, ., 6, ., 3, ., 8	0.7358	0.5698	0.0499	yes	N/A
Q292Q0	ATC1_DROPS	3, ., 6, ., 3, ., 8	0.8301	0.5698	0.0528	yes	N/A
P11607	AT2A2_PIG	3, ., 6, ., 3, ., 8	0.6603	0.5698	0.0508	yes	N/A
Q64518	AT2A3_MOUSE	3, ., 6, ., 3, ., 8	0.7358	0.5698	0.0510	yes	N/A
Q7PPA5	ATC1_ANOGA	3, ., 6, ., 3, ., 8	0.8490	0.5698	0.0520	yes	N/A
P22700	ATC1_DROME	3, ., 6, ., 3, ., 8	0.8113	0.5698	0.0519	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
TIGR01116	917	TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic	2e-13
TIGR01494	543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	3e-07
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	6e-06
pfam00122	222	pfam00122, E1-E2_ATPase, E1-E2 ATPase	6e-06
TIGR01647	754	TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e	6e-05
TIGR01525	556	TIGR01525, ATPase-IB_hvy, heavy metal translocatin	4e-04
COG2217	713	COG2217, ZntA, Cation transport ATPase [Inorganic	0.001

>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 2/46 (4%)

Query: 45 KERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEV 90
          +ERNAE AIEALKEYE E  KV+R  +  V K  AK++VPGDIVE+
Sbjct: 56 QERNAEKAIEALKEYESEHAKVLRDGRWSVIK--AKDLVPGDIVEL 99

This model describes the P-type ATPase responsible for translocating calcium ions across the endoplasmic reticulum membrane of eukaryotes , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. These pumps transfer Ca2+ from the cytoplasm to the lumen of the endoplasmic reticulum. In humans and mice, at least, there are multiple isoforms of the SERCA pump with overlapping but not redundant functions. Defects in SERCA isoforms are associated with diseases in humans. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the latter of which is modelled by TIGR01522 [Transport and binding proteins, Cations and iron carrying compounds]. Length = 917

>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 32 LASMAYFALTEYQKERNAESAIEALKEYE--PEMGKVIRGDKSGVQKVRAKEIVPGDIVE 89
          L  +  F L   +++  AE  + +L +         V+R    G +++ AK++VPGD+V 
Sbjct: 3  LFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRN---GWKEIPAKDLVPGDVVL 59

Query: 90 VSE 92
          V  
Sbjct: 60 VKS 62

The P-type ATPases are a large family of trans-membrane transporters acting on charged substances. The distinguishing feature of the family is the formation of a phosphorylated intermediate (aspartyl-phosphate) during the course of the reaction. Another common name for these enzymes is the E1-E2 ATPases based on the two isolable conformations: E1 (unphosphorylated) and E2 (phosphorylated). Generally, P-type ATPases consist of only a single subunit encompassing the ATPase and ion translocation pathway, however, in the case of the potassium (TIGR01497) and sodium/potassium (TIGR01106) varieties, these functions are split between two subunits. Additional small regulatory or stabilizing subunits may also exist in some forms. P-type ATPases are nearly ubiquitous in life and are found in numerous copies in higher organisms (at least 45 in Arabidopsis thaliana, for instance ). Phylogenetic analyses have revealed that the P-type ATPase subfamily is divided up into groups based on substrate specificities and this is represented in the various subfamily and equivalog models that have been made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525, IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++) TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+, H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++) TIGR01524, IV (phospholipid, flippase) TIGR01652 and V (unknown specificity) TIGR01657. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily. Length = 543

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 46  ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
           E  AE A+EALK+      KV+R  K    ++ A E+VPGDIV +  
Sbjct: 124 EYRAEKALEALKKMSSPKAKVLRDGK--FVEIPASELVPGDIVLLEA 168

Length = 917

>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase

 Score = 41.8 bits (99), Expect = 6e-06
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 39 ALTEYQKERNAESAIEALKEYEPEMG-KVIRGDKSGVQKVRAKEIVPGDIVEV 90
          AL E  +E  A  A++ALK+  P     VIR  K   +++ A E+V GDIV +
Sbjct: 10 ALLEAYQEYRARKALKALKKLLPPTAATVIRDGK--EEEIPADELVVGDIVLL 60

Length = 222

>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 46  ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIV 88
           E  A +A+EALK+      +V+R  K   Q++ A E+VPGD+V
Sbjct: 76  ENKAGNAVEALKQSLAPKARVLRDGK--WQEIPASELVPGDVV 116

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. Length = 754

>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 40 LTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
          L E  K R A  A+ AL    P   +V++GD S  ++V  +E+  GDIV V 
Sbjct: 34 LEERAKGR-ASDALSALLALAPSTARVLQGDGS-EEEVPVEELQVGDIVIVR 83

This model encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512. Length = 556

>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEV 90
            L    K R A  AI AL +  P+   V+RGD    ++V  +E+  GDIV V
Sbjct: 189 YLEARAKGR-ARRAIRALLDLAPKTATVVRGDG-EEEEVPVEEVQVGDIVLV 238

Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG0202|consensus	972		99.73
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.72
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	99.64
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.63
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.62
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.62
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.6
PRK15122	903	magnesium-transporting ATPase; Provisional	99.58
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.52
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	99.51
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.48
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.46
PRK14010	673	potassium-transporting ATPase subunit B; Provision	99.38
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.38
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.35
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.29
PRK01122	679	potassium-transporting ATPase subunit B; Provision	99.29
KOG0205|consensus	942		99.28
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	99.22
PF00122	230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	99.22
KOG0204|consensus	1034		99.15
PRK10671	834	copA copper exporting ATPase; Provisional	99.13
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.1
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.99
KOG0203|consensus	1019		98.73
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	98.56
KOG0208|consensus	1140		98.37
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	98.26
KOG0207|consensus	951		98.18
PLN03190	1178	aminophospholipid translocase; Provisional	97.52
KOG0209|consensus	1160		97.21
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	96.97
COG1188	100	Ribosome-associated heat shock protein implicated	87.01

>KOG0202|consensus

Probab=99.73  E-value=4.1e-19  Score=141.45  Aligned_cols=80  Identities=35%  Similarity=0.458  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV   83 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv   83 (93)
                      .+|+++|++||+...      |+|+++|.+++++++.+|+||||+|+|++++|+++.|+.|+|+|+|+  .+.++++|+|
T Consensus        63 ~iLL~sA~ISfvl~~------~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~gk--~~~i~A~eLV  134 (972)
T KOG0202|consen   63 LILLLSAAISFVLAD------FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLRSGK--LQHILARELV  134 (972)
T ss_pred             HHHHHHHHHHHHHHh------cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEecCc--ccceehhccC
Confidence            589999999999988      89999999999999999999999999999999999999999999999  9999999999


Q ss_pred             CCCEEEEe
Q psy6019          84 PGDIVEVS   91 (93)
Q Consensus        84 ~GDiv~v~   91 (93)
                      |||+|.++
T Consensus       135 PGDiV~l~  142 (972)
T KOG0202|consen  135 PGDIVELK  142 (972)
T ss_pred             CCCEEEEe
Confidence            99999986

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.72  E-value=3.5e-17  Score=134.40  Aligned_cols=81  Identities=25%  Similarity=0.350  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV   83 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv   83 (93)
                      ++|++++++|++.++      |.++++|++++++++.++++||+|+++++++|+++.+++++|+|||+  .++|+++|||
T Consensus        66 ~iL~~aails~~~~~------~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRdg~--~~~I~a~eLV  137 (1053)
T TIGR01523        66 MVLIIAAAISFAMHD------WIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGK--SDAIDSHDLV  137 (1053)
T ss_pred             HHHHHHHHHHHHHhh------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCe--eeecCHhhCC
Confidence            678999999999877      99999999999999999999999999999999999999999999999  8999999999


Q ss_pred             CCCEEEEee
Q psy6019          84 PGDIVEVSE   92 (93)
Q Consensus        84 ~GDiv~v~~   92 (93)
                      |||+|.+++
T Consensus       138 pGDIv~L~~  146 (1053)
T TIGR01523       138 PGDICLLKT  146 (1053)
T ss_pred             CCCEEEECC
Confidence            999999874

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=99.64  E-value=9.9e-16  Score=122.44  Aligned_cols=81  Identities=25%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV   83 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv   83 (93)
                      ++|++++++|++.++      |.++++|++++++++.++++||+++++++++|.++.|++++|+|||+  .+++|++|++
T Consensus        40 ~lL~~aa~~s~~~~~------~~~~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~--~~~I~~~~Lv  111 (755)
T TIGR01647        40 WVMEAAAIIAIALEN------WVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVLRDGK--WQEIPASELV  111 (755)
T ss_pred             HHHHHHHHHHHhhcc------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCE--EEEEEhhhCc
Confidence            578899999999887      89999999999999999999999999999999999999999999999  8999999999


Q ss_pred             CCCEEEEee
Q psy6019          84 PGDIVEVSE   92 (93)
Q Consensus        84 ~GDiv~v~~   92 (93)
                      |||+|.+++
T Consensus       112 ~GDiV~l~~  120 (755)
T TIGR01647       112 PGDVVRLKI  120 (755)
T ss_pred             CCCEEEECC
Confidence            999999975

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.63  E-value=1.9e-15  Score=122.47  Aligned_cols=81  Identities=26%  Similarity=0.367  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV   83 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv   83 (93)
                      ++|++++++|++.++      |.++++|++++++++.++++||+++++++++|.++.|++++|+|||+  .++|+++||+
T Consensus        65 ~~L~~aa~ls~~~g~------~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRdg~--~~~I~~~eLv  136 (884)
T TIGR01522        65 LLLIASAVISVFMGN------IDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIREGK--LEHVLASTLV  136 (884)
T ss_pred             HHHHHHHHHHHHHcc------hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCE--EEEEEHHHCc
Confidence            678889999999887      88999999999999999999999999999999999999999999999  8999999999


Q ss_pred             CCCEEEEee
Q psy6019          84 PGDIVEVSE   92 (93)
Q Consensus        84 ~GDiv~v~~   92 (93)
                      |||+|.+++
T Consensus       137 ~GDiv~l~~  145 (884)
T TIGR01522       137 PGDLVCLSV  145 (884)
T ss_pred             cCCEEEecC
Confidence            999999875

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.62  E-value=2.6e-15  Score=122.01  Aligned_cols=88  Identities=35%  Similarity=0.391  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHhhcc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEe
Q psy6019           3 DLSLVGCYNMSAMSTE----QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVR   78 (93)
Q Consensus         3 ~~~L~~~~~~s~~~~~----~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~   78 (93)
                      -++|++++++|++.+.    ......|.++++|++++++++.++++||+|+++++++|.++.|.+++|+|||+  .++++
T Consensus        10 ~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRdg~--~~~I~   87 (917)
T TIGR01116        10 VRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRDGR--WSVIK   87 (917)
T ss_pred             HHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEECCE--EEEEE
Confidence            3689999999988531    11223599999999999999999999999999999999999999999999999  89999


Q ss_pred             CCCCCCCCEEEEee
Q psy6019          79 AKEIVPGDIVEVSE   92 (93)
Q Consensus        79 ~~elv~GDiv~v~~   92 (93)
                      ++||||||+|.+++
T Consensus        88 ~~~Lv~GDiv~l~~  101 (917)
T TIGR01116        88 AKDLVPGDIVELAV  101 (917)
T ss_pred             HHHCCCCCEEEECC
Confidence            99999999999974

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.62  E-value=4.3e-15  Score=120.75  Aligned_cols=81  Identities=22%  Similarity=0.283  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC------CccceEEE
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRG------DKSGVQKV   77 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~------g~~~~~~i   77 (93)
                      ++|++++++|++.++      |.++++|+++++++.+++++||+|+++++++|.++.|++++|+||      |+  .++|
T Consensus       107 ~lL~~aa~ls~~~~~------~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~--~~~I  178 (902)
T PRK10517        107 ILLTILGAISYATED------LFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENG--WLEI  178 (902)
T ss_pred             HHHHHHHHHHHHHcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCe--EEEE
Confidence            577888999999877      889999999999999999999999999999999999999999999      56  7999


Q ss_pred             eCCCCCCCCEEEEee
Q psy6019          78 RAKEIVPGDIVEVSE   92 (93)
Q Consensus        78 ~~~elv~GDiv~v~~   92 (93)
                      +++||+|||+|.+++
T Consensus       179 ~~~eLvpGDiV~l~~  193 (902)
T PRK10517        179 PIDQLVPGDIIKLAA  193 (902)
T ss_pred             EHHhCCCCCEEEECC
Confidence            999999999999874

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.60  E-value=7.2e-15  Score=118.99  Aligned_cols=81  Identities=23%  Similarity=0.313  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEe------CCccceEEE
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIR------GDKSGVQKV   77 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir------~g~~~~~~i   77 (93)
                      ++|++++++|++.++      |.++++|+++++++..++++||+|+++++++|.++.+++++|+|      ||+  .+++
T Consensus        73 ~iL~~~a~ls~~~~~------~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~--~~~I  144 (867)
T TIGR01524        73 YILAMLMGVSYLTDD------LEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGS--MDEV  144 (867)
T ss_pred             HHHHHHHHHHHHHhh------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCe--EEEE
Confidence            578899999998876      88999999999999999999999999999999999999999999      899  8999


Q ss_pred             eCCCCCCCCEEEEee
Q psy6019          78 RAKEIVPGDIVEVSE   92 (93)
Q Consensus        78 ~~~elv~GDiv~v~~   92 (93)
                      +++||+|||+|.+++
T Consensus       145 ~~~eLv~GDiV~l~~  159 (867)
T TIGR01524       145 PIDALVPGDLIELAA  159 (867)
T ss_pred             EhhcCCCCCEEEECC
Confidence            999999999999974

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.58  E-value=1.4e-14  Score=117.85  Aligned_cols=87  Identities=24%  Similarity=0.264  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHhhcch-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCC------cc
Q psy6019           4 LSLVGCYNMSAMSTEQ-----RNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGD------KS   72 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~-----~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g------~~   72 (93)
                      ++|++++++|++.+..     +...+|.++++|+++++++.+++++||+|+++++++|+++.|++++|+|||      + 
T Consensus        85 ~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~-  163 (903)
T PRK15122         85 YVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPV-  163 (903)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCe-
Confidence            6889999999986321     123358999999999999999999999999999999999999999999995      5 


Q ss_pred             ceEEEeCCCCCCCCEEEEee
Q psy6019          73 GVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        73 ~~~~i~~~elv~GDiv~v~~   92 (93)
                       .++||++||+|||+|.+++
T Consensus       164 -~~~I~~~eLv~GDiV~l~~  182 (903)
T PRK15122        164 -RREIPMRELVPGDIVHLSA  182 (903)
T ss_pred             -EEEEEHHHCCCCCEEEECC
Confidence             7999999999999999975

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.52  E-value=8.3e-14  Score=114.15  Aligned_cols=87  Identities=21%  Similarity=0.211  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHhhcc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019           4 LSLVGCYNMSAMSTE-------QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK   76 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~-------~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~   76 (93)
                      ++|+++++++++...       .....+|.++++|++++++++.++++||+|+++++++|.++.|.+++|+|||+  .++
T Consensus        76 ~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~--~~~  153 (997)
T TIGR01106        76 MLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGE--KMS  153 (997)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCE--EEE
Confidence            567888888776411       01124688999999999999999999999999999999999999999999999  899


Q ss_pred             EeCCCCCCCCEEEEee
Q psy6019          77 VRAKEIVPGDIVEVSE   92 (93)
Q Consensus        77 i~~~elv~GDiv~v~~   92 (93)
                      ++++||+|||+|.+++
T Consensus       154 I~~~~lv~GDiv~l~~  169 (997)
T TIGR01106       154 INAEQVVVGDLVEVKG  169 (997)
T ss_pred             eeHHHCCCCCEEEECC
Confidence            9999999999999974

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.51  E-value=3.6e-14  Score=115.54  Aligned_cols=81  Identities=33%  Similarity=0.399  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHhhcchhhhhhH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMML----ASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRA   79 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~----~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~   79 (93)
                      ++|+.++++|++.+.      |    .++.+|+.++++|+.+|++||+|+++++++|+++.+.+++|+|||+  .+++++
T Consensus        84 ~iL~~~a~~s~~~~~------~~~~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~--~~~i~a  155 (917)
T COG0474          84 ILLLVAALLSAFVGD------WVDAGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLRDGK--FVEIPA  155 (917)
T ss_pred             HHHHHHHHHHHHhhc------ccccCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeCCc--EEEecH
Confidence            578889999998877      5    6778999999999999999999999999999999999999999999  899999


Q ss_pred             CCCCCCCEEEEee
Q psy6019          80 KEIVPGDIVEVSE   92 (93)
Q Consensus        80 ~elv~GDiv~v~~   92 (93)
                      +||||||+|.+++
T Consensus       156 ~eLVpGDiV~l~~  168 (917)
T COG0474         156 SELVPGDIVLLEA  168 (917)
T ss_pred             HHCCCCcEEEECC
Confidence            9999999999874

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.48  E-value=2.7e-13  Score=110.55  Aligned_cols=87  Identities=22%  Similarity=0.205  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHhhcc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccC-CCeeEEEeCCccceE
Q psy6019           4 LSLVGCYNMSAMSTE-------QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYE-PEMGKVIRGDKSGVQ   75 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~-------~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~-~~~a~Vir~g~~~~~   75 (93)
                      ++|++++++|++.+.       .....+|.++++|+++++++.++++++|+++++++++|.+.. +.+++|+|||+  .+
T Consensus       100 ~~l~~~ails~~~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~--~~  177 (941)
T TIGR01517       100 ILLSVAAVVSLVLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQ--EQ  177 (941)
T ss_pred             HHHHHHHHHHHHHhhcccccccCccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCE--EE
Confidence            578889999988541       112346999999999999999999999999999999998754 66999999999  89


Q ss_pred             EEeCCCCCCCCEEEEee
Q psy6019          76 KVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        76 ~i~~~elv~GDiv~v~~   92 (93)
                      +++++||+|||+|.+++
T Consensus       178 ~I~~~~Lv~GDiV~l~~  194 (941)
T TIGR01517       178 QISIHDIVVGDIVSLST  194 (941)
T ss_pred             EEeHHHCCCCCEEEECC
Confidence            99999999999999874

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.46  E-value=4.8e-13  Score=103.53  Aligned_cols=83  Identities=24%  Similarity=0.259  Sum_probs=76.7

Q ss_pred             chhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCC
Q psy6019           2 ADLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKE   81 (93)
Q Consensus         2 ~~~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~e   81 (93)
                      .|.++..++.++++.++      |.++.+|+++++++..++.++|+|+.+.+++|.++.|++++|+|||+  .+++++++
T Consensus         1 ~~~l~~~a~~~~~~~~~------~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~--~~~i~~~~   72 (536)
T TIGR01512         1 VDLLMALAALGAVAIGE------YLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGS--LEEVAVEE   72 (536)
T ss_pred             CcHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCE--EEEEEHHH
Confidence            37888888888888776      78889999999999999999999999999999999999999999999  89999999


Q ss_pred             CCCCCEEEEee
Q psy6019          82 IVPGDIVEVSE   92 (93)
Q Consensus        82 lv~GDiv~v~~   92 (93)
                      ++|||++.+++
T Consensus        73 l~~GDiv~v~~   83 (536)
T TIGR01512        73 LKVGDVVVVKP   83 (536)
T ss_pred             CCCCCEEEEcC
Confidence            99999999874

.

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=99.38  E-value=3e-12  Score=101.67  Aligned_cols=87  Identities=11%  Similarity=0.087  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHhhcchhh-----hhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHhccCCC-eeE-EEeCCcc
Q psy6019           4 LSLVGCYNMSAMSTEQRN-----RMMLASAKRNLASMAYFALTEYQK----ERNAESAIEALKEYEPE-MGK-VIRGDKS   72 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~-----~~~~~~~~~I~~~v~l~~~i~~~~----e~~a~~~~~~L~~l~~~-~a~-Vir~g~~   72 (93)
                      ++|.+++++|++.+...+     .....+++.|+++++++.++++|+    |+|+++++++|+++.|+ +++ +.|||+ 
T Consensus        36 ~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~rdg~-  114 (673)
T PRK14010         36 FVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIKQDGS-  114 (673)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeCCE-
Confidence            578889999987544211     001245888888999999999999    67899999999999987 786 679999 


Q ss_pred             ceEEEeCCCCCCCCEEEEee
Q psy6019          73 GVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        73 ~~~~i~~~elv~GDiv~v~~   92 (93)
                       .+++|++|++|||+|.+++
T Consensus       115 -~~~I~a~eLv~GDiV~v~~  133 (673)
T PRK14010        115 -YEMIDASDLKKGHIVRVAT  133 (673)
T ss_pred             -EEEEEHHHcCCCCEEEECC
Confidence             8999999999999999975

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.38  E-value=3.9e-12  Score=98.75  Aligned_cols=82  Identities=23%  Similarity=0.215  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCC-ccceEEEeCCC
Q psy6019           3 DLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGD-KSGVQKVRAKE   81 (93)
Q Consensus         3 ~~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g-~~~~~~i~~~e   81 (93)
                      |+++..+..++++.+.      |.++.+|+++++++..++.++++|+++.+++|.++.|++++++||| +  .++++.++
T Consensus         2 d~l~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~--~~~i~~~~   73 (556)
T TIGR01525         2 DLLMALATIAAYAMGL------VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGS--EEEVPVEE   73 (556)
T ss_pred             cHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCe--EEEEEHHH
Confidence            6777777788887766      7899999999999999999999999999999999999999999996 8  79999999


Q ss_pred             CCCCCEEEEee
Q psy6019          82 IVPGDIVEVSE   92 (93)
Q Consensus        82 lv~GDiv~v~~   92 (93)
                      ++|||+|.+++
T Consensus        74 l~~GDiv~v~~   84 (556)
T TIGR01525        74 LQVGDIVIVRP   84 (556)
T ss_pred             CCCCCEEEECC
Confidence            99999999975

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=99.35  E-value=6.6e-12  Score=100.53  Aligned_cols=82  Identities=20%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCC
Q psy6019           3 DLSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEI   82 (93)
Q Consensus         3 ~~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~el   82 (93)
                      |.+...++..+++.+.      |.++++++++++++..++.+++.|+++.+++|.++.|++++++|||+  ++++|++++
T Consensus       190 ~~L~~~a~~~a~~~~~------~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~--~~~v~~~~l  261 (741)
T PRK11033        190 ETLMSVAAIGALFIGA------TAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGE--REEVAIADL  261 (741)
T ss_pred             cHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCE--EEEEEHHHC
Confidence            5555566666666655      78899999999999999999999999999999999999999999999  899999999


Q ss_pred             CCCCEEEEee
Q psy6019          83 VPGDIVEVSE   92 (93)
Q Consensus        83 v~GDiv~v~~   92 (93)
                      +|||+|.+++
T Consensus       262 ~~GDiv~v~~  271 (741)
T PRK11033        262 RPGDVIEVAA  271 (741)
T ss_pred             CCCCEEEECC
Confidence            9999999875

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=99.29  E-value=3.4e-11  Score=99.39  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV   83 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv   83 (93)
                      +++++|.++. +..+     +|.++++|+++++++..++.++++|+.++++++.. .|..++|+|||+  +++++++||+
T Consensus       178 i~~i~~~~l~-~~~~-----~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~Rdg~--~~~I~s~eLv  248 (1054)
T TIGR01657       178 VFQVFSVILW-LLDE-----YYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVIRNGK--WVTIASDELV  248 (1054)
T ss_pred             HHHHHHHHHH-Hhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEEECCE--EEEEEcccCC
Confidence            3455554444 4444     48899999999999999999999999998888765 467899999999  8999999999


Q ss_pred             CCCEEEEe
Q psy6019          84 PGDIVEVS   91 (93)
Q Consensus        84 ~GDiv~v~   91 (93)
                      |||+|.++
T Consensus       249 pGDiv~l~  256 (1054)
T TIGR01657       249 PGDIVSIP  256 (1054)
T ss_pred             CCCEEEEe
Confidence            99999997

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=99.29  E-value=3e-11  Score=96.11  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHhhcc-----h---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEeCCccce
Q psy6019           4 LSLVGCYNMSAMSTE-----Q---RNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIRGDKSGV   74 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~-----~---~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir~g~~~~   74 (93)
                      ++|++++++|++.+-     +   ....+|..++.+++.++++.+++.++|+|+++++++|+++.|+ +++++|||+. .
T Consensus        37 ~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vir~g~~-~  115 (679)
T PRK01122         37 FVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKLREPGA-A  115 (679)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCE-E
Confidence            578888999987431     0   1235566777777888888888889999999999999999987 7999998751 4


Q ss_pred             EEEeCCCCCCCCEEEEee
Q psy6019          75 QKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        75 ~~i~~~elv~GDiv~v~~   92 (93)
                      +++|++|+++||+|.+++
T Consensus       116 ~~V~~~eL~~GDiV~v~~  133 (679)
T PRK01122        116 EEVPATELRKGDIVLVEA  133 (679)
T ss_pred             EEEEHHHcCCCCEEEEcC
Confidence            889999999999999975

>KOG0205|consensus

Probab=99.28  E-value=1.8e-12  Score=102.35  Aligned_cols=87  Identities=20%  Similarity=0.123  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHhh-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCC
Q psy6019           4 LSLVGCYNMSAMS-TEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEI   82 (93)
Q Consensus         4 ~~L~~~~~~s~~~-~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~el   82 (93)
                      ++.-.+|++.+.. ++.+.+-+|.+.++|.++.++|+.++|.+|+.|.++.++|++-..++++|+|||+  ..+++++++
T Consensus        75 wVMEaAAimA~~Lang~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlRDGk--w~E~eAs~l  152 (942)
T KOG0205|consen   75 WVMEAAAIMAIGLANGGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGK--WSEQEASIL  152 (942)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEeecCe--eeeeecccc
Confidence            4566677777653 3445667899999999999999999999999999999999988888999999999  799999999


Q ss_pred             CCCCEEEEee
Q psy6019          83 VPGDIVEVSE   92 (93)
Q Consensus        83 v~GDiv~v~~   92 (93)
                      ||||++.++.
T Consensus       153 VPGDIlsik~  162 (942)
T KOG0205|consen  153 VPGDILSIKL  162 (942)
T ss_pred             ccCceeeecc
Confidence            9999999863

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=99.22  E-value=1e-10  Score=93.04  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHhhcc----h---hhhhhHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEe-CCc
Q psy6019           4 LSLVGCYNMSAMSTE----Q---RNRMMLAS---AKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIR-GDK   71 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~----~---~~~~~~~~---~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir-~g~   71 (93)
                      ++|++++++|++..-    .   ++...|.+   ++.+++.++++.+++.++|+|+++++++|+++.|+ .++++| ||+
T Consensus        36 ~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~  115 (675)
T TIGR01497        36 FIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLRDDGA  115 (675)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeeCCE
Confidence            578888899977411    1   11123444   35556667778888889999999999999999988 588886 888


Q ss_pred             cceEEEeCCCCCCCCEEEEee
Q psy6019          72 SGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        72 ~~~~~i~~~elv~GDiv~v~~   92 (93)
                        .+++|+++++|||+|.+++
T Consensus       116 --~~~V~~~~L~~GDiV~V~~  134 (675)
T TIGR01497       116 --IDKVPADQLKKGDIVLVEA  134 (675)
T ss_pred             --EEEEEHHHCCCCCEEEECC
Confidence              8999999999999999875

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.22  E-value=7.4e-11  Score=81.66  Aligned_cols=61  Identities=26%  Similarity=0.399  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCe-eEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          30 RNLASMAYFALTEYQKERNAESAIEALKEYEPEM-GKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        30 ~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~-a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +|+++++++..++.++++|+++.+++|+++.+++ ++|.|||+  .++++.+|++|||++.+++
T Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~--~~~i~~~~L~~GDiI~l~~   62 (230)
T PF00122_consen    1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGR--WQKIPSSELVPGDIIILKA   62 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTE--EEEEEGGGT-TTSEEEEET
T ss_pred             CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccc--cccchHhhccceeeeeccc
Confidence            4677888999999999999999999999998887 99999999  8999999999999999974

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....

>KOG0204|consensus

Probab=99.15  E-value=9.1e-12  Score=100.24  Aligned_cols=86  Identities=20%  Similarity=0.164  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHhh--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEeCCccceEEEeCC
Q psy6019           4 LSLVGCYNMSAMS--TEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIRGDKSGVQKVRAK   80 (93)
Q Consensus         4 ~~L~~~~~~s~~~--~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir~g~~~~~~i~~~   80 (93)
                      ++|.+||++|+..  ..++.+.+|++++.|++.+++..+++...+|+.++++++|++...+ +..|+|||+  .++++.-
T Consensus       159 iIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~~ViR~G~--r~~isI~  236 (1034)
T KOG0204|consen  159 IILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKFQVIRGGR--RQQISIY  236 (1034)
T ss_pred             HHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEEEEEECCE--EEEEEEe
Confidence            5788999999874  3444566899999999999999999999999999999999987666 789999999  8999999


Q ss_pred             CCCCCCEEEEe
Q psy6019          81 EIVPGDIVEVS   91 (93)
Q Consensus        81 elv~GDiv~v~   91 (93)
                      |+++||++.++
T Consensus       237 diVVGDIv~lk  247 (1034)
T KOG0204|consen  237 DLVVGDIVQLK  247 (1034)
T ss_pred             eeeeccEEEee
Confidence            99999999986

>PRK10671 copA copper exporting ATPase; Provisional

Probab=99.13  E-value=4.8e-10  Score=90.70  Aligned_cols=69  Identities=13%  Similarity=0.293  Sum_probs=63.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          22 RMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.||+++..++++++++-.++.+.+.|+.+++++|.++.|++++++|+|+  ++++|+++++|||+|.+++
T Consensus       283 ~~~~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~--~~~v~~~~l~~GD~v~v~~  351 (834)
T PRK10671        283 HLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEG--EKSVPLADVQPGMLLRLTT  351 (834)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCc--EEEEEHHHcCCCCEEEEcC
Confidence            55788899999999988888888888999999999999999999999999  8999999999999999975

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=99.10  E-value=9.3e-10  Score=85.88  Aligned_cols=69  Identities=17%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC-CccceEEEeCCCCCCCCEEEEee
Q psy6019          22 RMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRG-DKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~-g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.+|.++.+++.+++++-.++.+.++|+++++++|.++.|++++++|+ |+  .+++|+++++|||+|.+++
T Consensus        51 ~~~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~--~~~v~~~~l~~GDii~v~~  120 (562)
T TIGR01511        51 HTFFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGS--IEEVPVALLQPGDIVKVLP  120 (562)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCe--EEEEEHHHCCCCCEEEECC
Confidence            456778888888888888888888889999999999999999999986 55  6899999999999999975

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.99  E-value=4.5e-09  Score=84.23  Aligned_cols=68  Identities=25%  Similarity=0.297  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEe-CCccceEEEeCCCCCCCCEEEEee
Q psy6019          23 MMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        23 ~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir-~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      .||+++.+|+.+++++-.++.+...|+++++++|.++.|++|++++ ||+  .+++|++|+++||++.++|
T Consensus       172 ~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~--~~~v~v~~v~~GD~v~Vrp  240 (713)
T COG2217         172 VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGE--EEEVPVEEVQVGDIVLVRP  240 (713)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCc--EEEEEHHHCCCCCEEEECC
Confidence            7789999999999988888888888999999999999999998887 566  7999999999999999986

>KOG0203|consensus

Probab=98.73  E-value=6.4e-10  Score=89.75  Aligned_cols=86  Identities=22%  Similarity=0.253  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHhh-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019           4 LSLVGCYNMSAMS-------TEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK   76 (93)
Q Consensus         4 ~~L~~~~~~s~~~-------~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~   76 (93)
                      +++.++++++++.       .+...+.+++.++++..++++..+.++|||.++.+-+++..+|.|..|+|+|||.  ...
T Consensus        98 ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViRdg~--k~~  175 (1019)
T KOG0203|consen   98 ILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIRDGE--KMT  175 (1019)
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeeecce--eEE
Confidence            5677888888762       1223355677788888888889999999999999999999999999999999999  999


Q ss_pred             EeCCCCCCCCEEEEe
Q psy6019          77 VRAKEIVPGDIVEVS   91 (93)
Q Consensus        77 i~~~elv~GDiv~v~   91 (93)
                      +.++|+|+||++.++
T Consensus       176 i~~eelVvGD~v~vk  190 (1019)
T KOG0203|consen  176 INAEELVVGDLVEVK  190 (1019)
T ss_pred             echhhcccccceeec
Confidence            999999999999886

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=98.56  E-value=8.8e-08  Score=73.53  Aligned_cols=58  Identities=41%  Similarity=0.607  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhc--cCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          32 LASMAYFALTEYQKERNAESAIEALKE--YEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        32 ~~~v~l~~~i~~~~e~~a~~~~~~L~~--l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.+++++.+++.+++++++++.++|.+  +.|++++++|+| +  +++|+++++|||+|.+++
T Consensus         3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~--~~V~~~~l~~GDiv~v~~   62 (499)
T TIGR01494         3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-W--KEIPASDLVPGDIVLVKS   62 (499)
T ss_pred             EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-e--EEEEHHHCCCCCEEEECC
Confidence            346778889999999999999999998  889999999988 3  889999999999999874

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>KOG0208|consensus

Probab=98.37  E-value=2.2e-06  Score=70.62  Aligned_cols=65  Identities=20%  Similarity=0.231  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          25 LASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        25 ~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ++-|..|+++.+.+...+.|++.+.++.++++-+. +-.++|+|||.  .++|.++|+||||++.+.+
T Consensus       214 ~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~R~g~--~~ti~S~eLVPGDil~i~~  278 (1140)
T KOG0208|consen  214 YYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVIRDGF--WETVDSSELVPGDILYIPP  278 (1140)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEECCE--EEEEeccccccccEEEECC
Confidence            34566667777888889999999999888877654 45789999999  8999999999999999864

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=98.26  E-value=6.6e-06  Score=68.46  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             chhHHHHHHHHHHhhc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC-CccceEEEeC
Q psy6019           2 ADLSLVGCYNMSAMST-EQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRG-DKSGVQKVRA   79 (93)
Q Consensus         2 ~~~~L~~~~~~s~~~~-~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~-g~~~~~~i~~   79 (93)
                      +.+.+++.+++.++.. ...+  .+...+-++++++++.+.+.+++++..++-++.   .++.++|+|+ |+  .++++.
T Consensus        29 ~N~yfl~i~ilq~ip~~s~~~--~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~---n~~~~~v~~~~~~--~~~i~~  101 (1057)
T TIGR01652        29 ANLYFLVVALLQQVPILSPTY--RGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEV---NNRLTEVLEGHGQ--FVEIPW  101 (1057)
T ss_pred             hhHHHHHHHHHHcCCCcCCCC--ccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHH---hCcEEEEECCCCc--EEEeee
Confidence            3466777888887732 1111  122333444455578888999999888776544   4678999997 78  799999


Q ss_pred             CCCCCCCEEEEee
Q psy6019          80 KEIVPGDIVEVSE   92 (93)
Q Consensus        80 ~elv~GDiv~v~~   92 (93)
                      ++++|||+|.+++
T Consensus       102 ~~l~~GDiv~l~~  114 (1057)
T TIGR01652       102 KDLRVGDIVKVKK  114 (1057)
T ss_pred             ecccCCCEEEEcC
Confidence            9999999999974

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>KOG0207|consensus

Probab=98.18  E-value=5.6e-06  Score=67.73  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          21 NRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        21 ~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      .+.+|+++.+++.++.+.-+++.....|+..++++|.++.|.+|.++.+|+. +++||.+.+.+||++.+.|
T Consensus       337 ~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~-e~eI~v~lvq~gdivkV~p  407 (951)
T KOG0207|consen  337 PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSE-EKEIPVDLVQVGDIVKVKP  407 (951)
T ss_pred             cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEeecCCc-ceEeeeeeeccCCEEEECC
Confidence            6778888888888887555555444556678999999999999999999854 7999999999999999875

>PLN03190 aminophospholipid translocase; Provisional

Probab=97.52  E-value=0.00079  Score=57.12  Aligned_cols=62  Identities=16%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          26 ASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        26 ~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ...+-++++++++++-+.+++++..++=++.   .++.++++|+|+  .++++.++|+|||+|.+++
T Consensus       138 t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~---N~~~~~v~~~~~--~~~i~~~~i~vGDiv~v~~  199 (1178)
T PLN03190        138 ASILPLAFVLLVTAVKDAYEDWRRHRSDRIE---NNRLAWVLVDDQ--FQEKKWKDIRVGEIIKIQA  199 (1178)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh---cCcEEEEEECCe--EEEEeHHHCCCCCEEEECC
Confidence            3444555566666667777777666554433   467899999999  8999999999999999864

>KOG0209|consensus

Probab=97.21  E-value=0.002  Score=53.24  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          24 MLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        24 ~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      ||+-+.+-+.+++.+-..-.+|+.|+-+.+++... .|-+..|.|+++  ++.+..+|+.|||+|.+.
T Consensus       216 yWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~-kpy~I~v~R~kK--W~~l~seeLlPgDvVSI~  280 (1160)
T KOG0209|consen  216 YWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGN-KPYTINVYRNKK--WVKLMSEELLPGDVVSIG  280 (1160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEEecCc--ceeccccccCCCceEEec
Confidence            68888888777776655566777777666655432 355889999999  699999999999999874

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=96.97  E-value=0.0027  Score=50.18  Aligned_cols=63  Identities=21%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCC-eeEEEeC-CccceEEEeCCCCCCCCEEEEee
Q psy6019          28 AKRNLASMAYFALTEYQKERNAESAIEALKEYEPE-MGKVIRG-DKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        28 ~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~-~a~Vir~-g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      .+.+.+.+++..+-+.+.|-|.+.+-++|++...+ .++.+++ |+  .+.+++.+++.||+|.+.+
T Consensus        69 ~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~~g~--~~~v~st~Lk~gdiV~V~a  133 (681)
T COG2216          69 TIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRADGS--IEMVPATELKKGDIVLVEA  133 (681)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcCCCC--eeeccccccccCCEEEEec
Confidence            34444555666666667777877788888877655 6888876 78  8999999999999999864

>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]

Probab=87.01  E-value=0.7  Score=28.99  Aligned_cols=28  Identities=29%  Similarity=0.406  Sum_probs=22.2

Q ss_pred             CCeeEEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          61 PEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        61 ~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      -+.-+|.-||+   ..-|+.++++||++.++
T Consensus        31 ~~~GrV~vNG~---~aKpS~~VK~GD~l~i~   58 (100)
T COG1188          31 IEGGRVKVNGQ---RAKPSKEVKVGDILTIR   58 (100)
T ss_pred             HHCCeEEECCE---EcccccccCCCCEEEEE
Confidence            34466777888   44799999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
2dqs_A	995	Crystal Structure Of The Calcium Pump With Amppcp I		1e-15
1kju_A	994	Ca2+-Atpase In The E2 State Length = 994		1e-15
3tlm_A	992	Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp		1e-15
3ba6_A	994	Structure Of The Ca2e1p Phosphoenzyme Intermediate		1e-15

>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)
Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 103 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 155

>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)
Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154

>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)
Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154

>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 45/53 (84%)
Query: 39  ALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           A+    +ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+
Sbjct: 102 AIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVA 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	9e-17
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	4e-11
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	7e-10
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	1e-07
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	2e-07

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 72.3 bits (178), Expect = 9e-17
 Identities = 34/47 (72%), Positives = 42/47 (89%)

Query: 46  ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
           ERNAE+AIEALKEYEPEMGKV R D+  VQ+++A++IVPGDIVEV+ 
Sbjct: 110 ERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAV 156

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score = 56.1 bits (136), Expect = 4e-11
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 43  YQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
           YQ E  + + I + K   P+   VIR       ++ A ++V GD+VE+  
Sbjct: 159 YQ-EFKSTNIIASFKNLVPQQATVIRDGD--KFQINADQLVVGDLVEMKG 205

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score = 53.0 bits (128), Expect = 7e-10
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 43  YQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
           YQ E  +   +++ K   P+   VIR  +     + A+ +V GD+VEV  
Sbjct: 154 YQ-EAKSSRIMDSFKNMVPQQALVIRDGE--KSTINAEFVVAGDLVEVKG 200

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 46  ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVS 91
           E NA +A  AL        KV+R  K    +  A  +VPGDIV + 
Sbjct: 114 ENNAGNAAAALMAGLAPKTKVLRDGK--WSEQEAAILVPGDIVSIK 157

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 46  ERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
           E  A S ++ LK+       V+R     ++++ A E+VPGDI++V E
Sbjct: 162 EFQAGSIVDELKKTLALKAVVLRDGT--LKEIEAPEVVPGDILQVEE 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.6
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	99.57
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.55
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.48
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.4
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	99.16
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	99.16
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.15
2kij_A	124	Copper-transporting ATPase 1; actuator, menkes dis	98.82
2hc8_A	113	PACS, cation-transporting ATPase, P-type; copper,	98.78
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	92.46
2jmz_A	186	Hypothetical protein MJ0781; unknown function; NMR	84.01
2lcj_A	185	PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi	83.69

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.60  E-value=1.6e-15  Score=123.02  Aligned_cols=87  Identities=20%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHhhc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019           4 LSLVGCYNMSAMST-------EQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK   76 (93)
Q Consensus         4 ~~L~~~~~~s~~~~-------~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~   76 (93)
                      ++|+++++++++..       +....-+|.++++|++++++++++++|||+|+++++++|+++.|++++|+|||+  .++
T Consensus       112 ~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~--~~~  189 (1034)
T 3ixz_A          112 CLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGD--KFQ  189 (1034)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCE--EEE
Confidence            56777888887632       111223578899999999999999999999999999999999999999999999  899


Q ss_pred             EeCCCCCCCCEEEEee
Q psy6019          77 VRAKEIVPGDIVEVSE   92 (93)
Q Consensus        77 i~~~elv~GDiv~v~~   92 (93)
                      ||++||+|||+|.+++
T Consensus       190 I~~~eLv~GDiV~l~~  205 (1034)
T 3ixz_A          190 INADQLVVGDLVEMKG  205 (1034)
T ss_pred             EEHHHCCCCcEEEEcC
Confidence            9999999999999874

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=99.57  E-value=4.7e-15  Score=119.57  Aligned_cols=81  Identities=23%  Similarity=0.317  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCC
Q psy6019           4 LSLVGCYNMSAMSTEQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIV   83 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv   83 (93)
                      ++|+++++++++.++      |.++++|+++++++++++++||+|+++++++|+++.|++++|+|||+  .+++|++||+
T Consensus       126 ~ll~~aai~s~~~g~------~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~--~~~I~~~eLv  197 (920)
T 1mhs_A          126 FVMEGAAVLAAGLED------WVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGT--LKEIEAPEVV  197 (920)
T ss_dssp             HHHHHHHHHCTTCSC------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSS--EEECCTTTSC
T ss_pred             HHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEECCE--EEEEEHHHcC
Confidence            577788888888877      77888899999999999999999999999999999999999999999  8999999999


Q ss_pred             CCCEEEEee
Q psy6019          84 PGDIVEVSE   92 (93)
Q Consensus        84 ~GDiv~v~~   92 (93)
                      |||+|.+++
T Consensus       198 ~GDiV~l~~  206 (920)
T 1mhs_A          198 PGDILQVEE  206 (920)
T ss_dssp             TTSEEEECT
T ss_pred             CCCEEEeCC
Confidence            999999874

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.55  E-value=9.8e-15  Score=118.46  Aligned_cols=87  Identities=18%  Similarity=0.186  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHhhcc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEE
Q psy6019           4 LSLVGCYNMSAMSTE-------QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQK   76 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~-------~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~   76 (93)
                      ++|++++++|++...       +....+|.++++|+++++++++++++||+|+++++++|+++.|++++|+|||+  .++
T Consensus       107 ~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~--~~~  184 (1028)
T 2zxe_A          107 ILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGE--KST  184 (1028)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTE--EEE
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEECCE--EEE
Confidence            578888999987421       11123578899999999999999999999999999999999999999999999  899


Q ss_pred             EeCCCCCCCCEEEEee
Q psy6019          77 VRAKEIVPGDIVEVSE   92 (93)
Q Consensus        77 i~~~elv~GDiv~v~~   92 (93)
                      ||++||+|||+|.+++
T Consensus       185 I~~~~Lv~GDiV~l~~  200 (1028)
T 2zxe_A          185 INAEFVVAGDLVEVKG  200 (1028)
T ss_dssp             EEGGGCCTTCEEEEET
T ss_pred             EEHHHCCcCCEEEECC
Confidence            9999999999999974

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.48  E-value=1.1e-13  Score=111.97  Aligned_cols=88  Identities=44%  Similarity=0.559  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHhhc----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCc-cceEEEe
Q psy6019           4 LSLVGCYNMSAMST----EQRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDK-SGVQKVR   78 (93)
Q Consensus         4 ~~L~~~~~~s~~~~----~~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~-~~~~~i~   78 (93)
                      ++|++++++|++..    +++....|.++++|++++++++.+++|||+|+++++++|+++.|++++|+|||+ | .+++|
T Consensus        64 ~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~-~~~I~  142 (995)
T 3ar4_A           64 RILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKS-VQRIK  142 (995)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSS-CEEEE
T ss_pred             HHHHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeCCCce-EEEEE
Confidence            46778888887742    111233577899999999999999999999999999999999999999999875 1 38999


Q ss_pred             CCCCCCCCEEEEee
Q psy6019          79 AKEIVPGDIVEVSE   92 (93)
Q Consensus        79 ~~elv~GDiv~v~~   92 (93)
                      ++||+|||+|.+++
T Consensus       143 ~~~lv~GDiV~l~~  156 (995)
T 3ar4_A          143 ARDIVPGDIVEVAV  156 (995)
T ss_dssp             GGGCCTTCEEEEET
T ss_pred             HHHCCCCCEEEECC
Confidence            99999999999974

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=99.40  E-value=4.9e-15  Score=119.00  Aligned_cols=87  Identities=21%  Similarity=0.152  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHhhcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCC
Q psy6019           4 LSLVGCYNMSAMSTE-QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEI   82 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~-~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~el   82 (93)
                      ++|++++++|++.+. .+.+.+|.++++|+++++++..++++||+|+++++++|.++.|++++|+|||+  .+++|++||
T Consensus        71 ~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG~--~~~I~~~~L  148 (885)
T 3b8c_A           71 WVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGK--WSEQEAAIL  148 (885)
T ss_dssp             SHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSSC--SCCCCTTTT
T ss_pred             HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCE--EEEEEHHHC
Confidence            578889999988641 11222478888999999999999999999999999999999999999999999  799999999


Q ss_pred             CCCCEEEEee
Q psy6019          83 VPGDIVEVSE   92 (93)
Q Consensus        83 v~GDiv~v~~   92 (93)
                      +|||+|.+++
T Consensus       149 v~GDiV~l~~  158 (885)
T 3b8c_A          149 VPGDIVSIKL  158 (885)
T ss_dssp             CTTSBCCCCS
T ss_pred             CCCCEEEECC
Confidence            9999998864

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.16  E-value=1.9e-11  Score=95.23  Aligned_cols=67  Identities=25%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          24 MLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        24 ~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ||+++++++.+++++..++.+.+.|+++++++|.++.|++++|+|||+  ++++|++|++|||+|.+++
T Consensus        95 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~--~~~i~~~~l~~GDiv~v~~  161 (645)
T 3j08_A           95 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRP  161 (645)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTE--EEEEEGGGCCTTCEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCE--EEEEEHHHCCCCCEEEECC
Confidence            577788888888877777777777888899999999999999999999  8999999999999999975

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.16  E-value=3.3e-11  Score=94.90  Aligned_cols=67  Identities=25%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          24 MLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        24 ~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ||+++++++.+++++..++.+.+.|+++++++|.++.|++++|+|||+  ++++|++|++|||+|.+++
T Consensus       173 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~--~~~i~~~~l~~GDiv~v~~  239 (723)
T 3j09_A          173 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRP  239 (723)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTE--EEEEEGGGCCTTCEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCE--EEEEEHHHCCCCCEEEECC
Confidence            677788888888877777777777888899999999999999999999  8999999999999999975

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=99.15  E-value=7e-11  Score=93.49  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=62.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEe-CCccceEEEeCCCCCCCCEEEEee
Q psy6019          22 RMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMGKVIR-GDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        22 ~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir-~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      +.||+.+.+|+++++++.+++.+.+.|+.+++++|.++.|++++++| ||+  ++++|+++|+|||+|.+++
T Consensus       185 ~~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~--~~~v~~~~l~~GDiv~v~~  254 (736)
T 3rfu_A          185 AVYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGS--EEEVSLDNVAVGDLLRVRP  254 (736)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEE--EEEEETTTCCTTCEECCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCE--EEEEEHhhCCCCCEEEECC
Confidence            56788888888999988888888888999999999999999999998 888  8999999999999999875

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}

Probab=98.82  E-value=3.1e-09  Score=67.66  Aligned_cols=47  Identities=17%  Similarity=0.264  Sum_probs=37.7

Q ss_pred             HHhHHHHHHHHhccCCCeeEEEeCCccc----eEEEeCCCCCCCCEEEEee
Q psy6019          46 ERNAESAIEALKEYEPEMGKVIRGDKSG----VQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        46 e~~a~~~~~~L~~l~~~~a~Vir~g~~~----~~~i~~~elv~GDiv~v~~   92 (93)
                      |+|+.+++++|.++.|++++|+|+|+.+    .+++|+++|+|||+|.+++
T Consensus         2 ~~ka~~~l~~L~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~   52 (124)
T 2kij_A            2 SFTMSEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVP   52 (124)
T ss_dssp             ----CCHHHHHHHTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCT
T ss_pred             hHHHHHHHHHHhccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECC
Confidence            5788999999999999999999976421    4789999999999999874

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F

Probab=98.78  E-value=5.1e-09  Score=65.72  Aligned_cols=39  Identities=36%  Similarity=0.419  Sum_probs=36.4

Q ss_pred             HHHHHhccCCCeeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          52 AIEALKEYEPEMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        52 ~~~~L~~l~~~~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      ++++|.++.|++++++|||+  .+++++++|+|||++.+++
T Consensus         2 al~~L~~l~p~~a~v~r~g~--~~~i~~~~l~~GDiv~v~~   40 (113)
T 2hc8_A            2 AIKKLVGLQAKTAVVIRDGK--EIAVPVEEVAVGDIVIVRP   40 (113)
T ss_dssp             HHHHHHHHSCSEEEEEETTE--EEEEEGGGCCTTCEEEECT
T ss_pred             HHHHHhcCCCCEEEEEECCE--EEEEEHHHCCCCCEEEECC
Confidence            67889999999999999999  8999999999999999975

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=92.46  E-value=0.00031  Score=47.97  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhccCCCeeEEEeC
Q psy6019          36 AYFALTEYQKERNAESAIEALKEYEPEMGKVIRG   69 (93)
Q Consensus        36 ~l~~~i~~~~e~~a~~~~~~L~~l~~~~a~Vir~   69 (93)
                      +++++++++||+++++.++++++|.|..|+|+|.
T Consensus       221 ~i~~~~~~~q~~~~~~~~~~~~~~~p~~~~v~~~  254 (254)
T 1bg5_A          221 LVPRGSSYYQEAKSSKIMESFKNMVPQQALVNSS  254 (254)
T ss_dssp             CCSCCCTTTTCSSSCSCCSSSCCCCCCCCCCSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhCCCceEEecC
Confidence            3567889999999999999999999999999984

>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A

Probab=84.01  E-value=1.5  Score=28.64  Aligned_cols=24  Identities=17%  Similarity=0.367  Sum_probs=19.1

Q ss_pred             EEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          66 VIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        66 Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      +.++|+  ..++++++|.+||.|.+.
T Consensus       107 v~~~g~--~~w~~A~eLk~GD~v~~~  130 (186)
T 2jmz_A          107 ISKTGE--VLEINAEMVKVGDYIYIP  130 (186)
T ss_dssp             EEETTE--EEEEEGGGCCTTSEEEEE
T ss_pred             EeCCCe--EEEEEhhcCCCCCEEEec
Confidence            334566  789999999999999764

>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}

Probab=83.69  E-value=1.5  Score=28.65  Aligned_cols=30  Identities=30%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             CCCee-EEEeCCccceEEEeCCCCCCCCEEEEe
Q psy6019          60 EPEMG-KVIRGDKSGVQKVRAKEIVPGDIVEVS   91 (93)
Q Consensus        60 ~~~~a-~Vir~g~~~~~~i~~~elv~GDiv~v~   91 (93)
                      .|++- -+.++|+  ..++++++|.+||.|.+.
T Consensus        90 T~~H~~~v~~~g~--~~~~~A~eLk~GD~v~v~  120 (185)
T 2lcj_A           90 TVDHPVLVYENGR--FIEKRAFEVKEGDKVLVS  120 (185)
T ss_dssp             CSSSEEEEEETTE--EEEEEGGGCCTTCEEEEC
T ss_pred             CCCCEEEEecCCe--EEEEEHHHCCCCCEEEEc
Confidence            44432 3445666  789999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d1wpga1	115	b.82.7.1 (A:125-239) Calcium ATPase, transduction	4e-09

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 47.4 bits (112), Expect = 4e-09
 Identities = 19/31 (61%), Positives = 26/31 (83%)

Query: 62 EMGKVIRGDKSGVQKVRAKEIVPGDIVEVSE 92
          EMGKV R D+  VQ+++A++IVPGDIVEV+ 
Sbjct: 1  EMGKVYRADRKSVQRIKARDIVPGDIVEVAV 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1wpga1	115	Calcium ATPase, transduction domain A {Rabbit (Ory	98.18
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	98.13
d1c06a_	159	Ribosomal protein S4 {Bacillus stearothermophilus	85.13
d2gy9d1	204	Ribosomal protein S4 {Escherichia coli [TaxId: 562	80.35

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.18  E-value=5.9e-07  Score=55.00  Aligned_cols=30  Identities=60%  Similarity=1.024  Sum_probs=25.9

Q ss_pred             eeEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          63 MGKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        63 ~a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      .++|+|+|++..++|+++||+|||+|.+++
T Consensus         2 ~~kV~R~g~~~v~~I~~~eLv~GDiv~l~~   31 (115)
T d1wpga1           2 MGKVYRADRKSVQRIKARDIVPGDIVEVAV   31 (115)
T ss_dssp             EEEEEBSSCSSCEEEEGGGCCTTCEEEEET
T ss_pred             ceEEEECCCceEEEEeHHHCCCCCEEEECC
Confidence            589999998434789999999999999874

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.13  E-value=1e-06  Score=64.37  Aligned_cols=61  Identities=31%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHhhcc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCee
Q psy6019           4 LSLVGCYNMSAMSTE----QRNRMMLASAKRNLASMAYFALTEYQKERNAESAIEALKEYEPEMG   64 (93)
Q Consensus         4 ~~L~~~~~~s~~~~~----~~~~~~~~~~~~I~~~v~l~~~i~~~~e~~a~~~~~~L~~l~~~~a   64 (93)
                      ++|++++++|++.+.    ......|.++++|+.++++|+.++++||+|++++++++.++.+...
T Consensus        63 ~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~~~~  127 (472)
T d1wpga4          63 RILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAAT  127 (472)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTSTTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhHhHhhhhhheeeeeeeEEeEEechHHHHHHHHhhhccccc
Confidence            688999999987432    2234468999999999999999999999999999999999987654

>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.13  E-value=0.18  Score=31.43  Aligned_cols=27  Identities=19%  Similarity=0.447  Sum_probs=23.7

Q ss_pred             eEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          64 GKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        64 a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      -++.-||+  ...+|+-.+.|||+|.+++
T Consensus        76 ghi~vNgk--~v~iPSy~vk~GDvIsvke  102 (159)
T d1c06a_          76 GHILVDGS--RVNIPSYRVKPGQTIAVRE  102 (159)
T ss_dssp             SCEEETTE--ECCCSSCCCCSSCEEEECG
T ss_pred             cceEccce--EEEecceeecCCcEEeecc
Confidence            45667999  8999999999999999864

>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Escherichia coli [TaxId: 562]

Probab=80.35  E-value=0.22  Score=32.23  Aligned_cols=27  Identities=19%  Similarity=0.485  Sum_probs=23.3

Q ss_pred             eEEEeCCccceEEEeCCCCCCCCEEEEee
Q psy6019          64 GKVIRGDKSGVQKVRAKEIVPGDIVEVSE   92 (93)
Q Consensus        64 a~Vir~g~~~~~~i~~~elv~GDiv~v~~   92 (93)
                      -++.-||+  ...||+-.+.|||+|.+++
T Consensus       119 ghi~VNgk--~VnIPSy~vk~GDvIsvke  145 (204)
T d2gy9d1         119 KAIMVNGR--VVNIASYQVSPNDVVSIRE  145 (204)
T ss_dssp             TCEEESSS--BCCCTTCBCCTTCBEEECT
T ss_pred             cceecCCE--EEEeccEeecCCCEEEecc
Confidence            34556999  8999999999999999874