Psyllid ID: psy6045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MSHVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQTKI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEEEEcccccHHHHcccEEEcccccccccccEEEEcccccccEEEEEEEEcccccccEEccEEEEcEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHcccccccEEEEEccccccHHHcccccccccccccccccccEEEEEcccccEEEEEEEEccccccEEEHHHHccEEEEcccccccccEEc
Coil and Loop (DISEMBL)
mshvnvpkqrrtfckkckihkvhkVTQYKKSkerkacqgrrrydrkqagyggqtkpifrkKAKTTKKIVLRMECteckyrkqlplkrckhfelggdkkrkvqtki
Flexible Loop (DISEMBL)
mshvnvpkqrrtfckkckihkvhkvtqykkskerkacqgrrrydrkqagyggqtkpifrkkakttkkIVLRmecteckyrkqlplkrckhfelggdkkrkvqtki
Low Complexity Region (SEG)
MSHVNVPKQRRTFckkckihkvhkvTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQTKI
Disordered region (IsUnstruct)
***********TFCKKCKIHKVHKVTQY***************************PIFRKKAKTTKKIVLRMECTECKYRKQLPLKRCKHFEL************
Disordered Region (DISOPRED)
*S*VNVPKQRRTFCKKCKIHKVHKV************************************AKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKR***TK*
Disordered Region (DISEMBL)
MSHVNVPKQRRTFCKKCKIHK***************************GYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGG**********
Disordered Region (DISPRO)
****NVPKQRRTFCKKCKIHKVHKVTQYKKSKERKA*QGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDK********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQTKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9NB33	104	60S ribosomal protein L44	N/A	N/A	0.942	0.951	0.898	1e-44
P48166	105	60S ribosomal protein L44	yes	N/A	0.952	0.952	0.792	1e-37
P90702	105	60S ribosomal protein L44	N/A	N/A	0.952	0.952	0.782	3e-37
Q969Q0	106	60S ribosomal protein L36	no	N/A	0.952	0.943	0.754	1e-35
P61486	106	60S ribosomal protein L36	N/A	N/A	0.952	0.943	0.745	3e-35
P61487	106	60S ribosomal protein L36	N/A	N/A	0.952	0.943	0.745	3e-35
P61485	106	60S ribosomal protein L36	yes	N/A	0.952	0.943	0.745	3e-35
P83883	106	60S ribosomal protein L36	yes	N/A	0.952	0.943	0.745	3e-35
P83884	106	60S ribosomal protein L36	yes	N/A	0.952	0.943	0.745	3e-35
P83882	106	60S ribosomal protein L36	yes	N/A	0.952	0.943	0.745	3e-35

>sp|Q9NB33|RL44_AEDTR 60S ribosomal protein L44 OS=Aedes triseriatus GN=RpL44 PE=3 SV=3

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/99 (89%), Positives = 94/99 (94%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPKQRRT+CKKCK+H+VHKVTQYKKSKERKA QGRRRYDRKQ G+GGQTKPIFRKKAK
Sbjct: 2   VNVPKQRRTYCKKCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKKIVLRMEC +CKYRKQ PLKRCKHFELGGDKKRK Q
Sbjct: 62  TTKKIVLRMECVDCKYRKQTPLKRCKHFELGGDKKRKGQ 100

Aedes triseriatus (taxid: 7162)

>sp|P48166|RL44_CAEEL 60S ribosomal protein L44 OS=Caenorhabditis elegans GN=rpl-41 PE=3 SV=2

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 4   VNVPKQRRTFCK-KCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKA 62
           VNVPK RRTFC  KC+ H  HKVTQYKK KE K  QGRRRYDRKQ+G+GGQTKPIFRKKA
Sbjct: 2   VNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKA 61

Query: 63  KTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQT 103
           KTTKKIVLRMECTECK++KQLP+KRCKHFELGG KK + Q 
Sbjct: 62  KTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQV 102

Caenorhabditis elegans (taxid: 6239)

>sp|P90702|RL44_BRUMA 60S ribosomal protein L44 OS=Brugia malayi GN=rpl-44 PE=3 SV=3

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 4   VNVPKQRRTFCK-KCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKA 62
           VNVPK RRTFC  KC+ H +HKVTQYKK KE +  QGRRRYD KQ G+GGQTKPIFRKKA
Sbjct: 2   VNVPKTRRTFCDGKCRRHTMHKVTQYKKGKESRLAQGRRRYDSKQKGFGGQTKPIFRKKA 61

Query: 63  KTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQT 103
           KTTKKIVLRMECTECK+RKQLP+KRCKHFELGG KK + Q 
Sbjct: 62  KTTKKIVLRMECTECKHRKQLPIKRCKHFELGGQKKTRGQV 102

Brugia malayi (taxid: 6279)

>sp|Q969Q0|RL36L_HUMAN 60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 85/102 (83%), Gaps = 2/102 (1%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRTFCKKC  H+ HKVTQYKK K+    QGRRRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

Homo sapiens (taxid: 9606)

>sp|P61486|RL36A_TAKRU 60S ribosomal protein L36a OS=Takifugu rubripes GN=rpl36a PE=3 SV=2

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 2/102 (1%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRT+CKKCK H+ HKVTQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTYCKKCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

Takifugu rubripes (taxid: 31033)

>sp|P61487|RL36A_ICTPU 60S ribosomal protein L36a OS=Ictalurus punctatus GN=rpl36a PE=3 SV=2

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 2/102 (1%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRT+CKKCK H+ HKVTQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTYCKKCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

Ictalurus punctatus (taxid: 7998)

>sp|P61485|RL36A_DANRE 60S ribosomal protein L36a OS=Danio rerio GN=rpl36a PE=2 SV=2

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 86/102 (84%), Gaps = 2/102 (1%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRT+CKKCK H+ HKVTQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTYCKKCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

Danio rerio (taxid: 7955)

>sp|P83883|RL36A_RAT 60S ribosomal protein L36a OS=Rattus norvegicus GN=Rpl36a PE=1 SV=2

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 85/102 (83%), Gaps = 2/102 (1%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRTFCKKC  H+ HKVTQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

Rattus norvegicus (taxid: 10116)

>sp|P83884|RL36A_PIG 60S ribosomal protein L36a OS=Sus scrofa GN=RPL36A PE=3 SV=2

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 85/102 (83%), Gaps = 2/102 (1%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRTFCKKC  H+ HKVTQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

Sus scrofa (taxid: 9823)

>sp|P83882|RL36A_MOUSE 60S ribosomal protein L36a OS=Mus musculus GN=Rpl36a PE=3 SV=2

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 85/102 (83%), Gaps = 2/102 (1%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRTFCKKC  H+ HKVTQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
332024647	211	60S ribosomal protein L44 [Acromyrmex ec	0.942	0.469	0.919	5e-45
195035539	114	GH10163 [Drosophila grimshawi] gi|193905	0.971	0.894	0.901	1e-44
195434394	106	GK14804 [Drosophila willistoni] gi|19416	0.971	0.962	0.901	2e-44
383865903	132	PREDICTED: 60S ribosomal protein L44-lik	0.961	0.765	0.910	2e-44
195388002	108	GJ20410 [Drosophila virilis] gi|19414913	0.961	0.935	0.900	3e-44
70909939	104	ribosomal protein L44e [Hister sp. APV-2	0.942	0.951	0.919	3e-44
91080271	104	PREDICTED: similar to ribosomal protein	0.942	0.951	0.919	4e-44
307181094	104	60S ribosomal protein L44 [Camponotus fl	0.942	0.951	0.919	6e-44
241669024	112	TA01007p [Drosophila melanogaster]	0.942	0.883	0.919	7e-44
38047529	103	similar to Drosophila melanogaster CG742	0.942	0.961	0.919	8e-44

>gi|332024647|gb|EGI64844.1| 60S ribosomal protein L44 [Acromyrmex echinatior]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 94/99 (94%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPKQRRTFCKKCK+HK HKVTQYKKSKER A QGRRRYDRKQ G+GGQTKPIFRKKAK
Sbjct: 109 VNVPKQRRTFCKKCKVHKNHKVTQYKKSKERHASQGRRRYDRKQQGFGGQTKPIFRKKAK 168

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKKIVLRMECTECKYRKQ+PLKRCKHFELGGDKKRK Q
Sbjct: 169 TTKKIVLRMECTECKYRKQIPLKRCKHFELGGDKKRKGQ 207

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035539|ref|XP_001989235.1| GH10163 [Drosophila grimshawi] gi|193905235|gb|EDW04102.1| GH10163 [Drosophila grimshawi]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 96/102 (94%)

Query: 1   MSHVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRK 60
           +S VNVPKQRRTFCKKCK+HK+HKVTQYKKSKERK  QGRRRYDRKQ G+GGQTKPIFRK
Sbjct: 9   VSAVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRK 68

Query: 61  KAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           KAKTTKKIVLRMECTECKYRKQ PLKRCKHFELGGDKKRK Q
Sbjct: 69  KAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ 110

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434394|ref|XP_002065188.1| GK14804 [Drosophila willistoni] gi|194161273|gb|EDW76174.1| GK14804 [Drosophila willistoni]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/102 (90%), Positives = 95/102 (93%)

Query: 1   MSHVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRK 60
           M  VNVPKQRRTFCKKCK+HK+HKVTQYKKSKERK  QGRRRYDRKQ G+GGQTKPIFRK
Sbjct: 1   MDIVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRK 60

Query: 61  KAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           KAKTTKKIVLRMECTECKYRKQ PLKRCKHFELGGDKKRK Q
Sbjct: 61  KAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ 102

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865903|ref|XP_003708411.1| PREDICTED: 60S ribosomal protein L44-like [Megachile rotundata]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/101 (91%), Positives = 95/101 (94%)

Query: 2   SHVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
           S VNVPKQRRTFCKKCK+HK HKVTQYKKSKER A QGRRRYDRKQ G+GGQTKPIFRKK
Sbjct: 28  SVVNVPKQRRTFCKKCKVHKPHKVTQYKKSKERHASQGRRRYDRKQQGFGGQTKPIFRKK 87

Query: 62  AKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           AKTTKKIVLRMECTECKYRKQ+PLKRCKHFELGGDKKRK Q
Sbjct: 88  AKTTKKIVLRMECTECKYRKQIPLKRCKHFELGGDKKRKGQ 128

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388002|ref|XP_002052681.1| GJ20410 [Drosophila virilis] gi|194149138|gb|EDW64836.1| GJ20410 [Drosophila virilis]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 95/101 (94%)

Query: 2   SHVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
           + VNVPKQRRTFCKKCK+HK+HKVTQYKKSKERK  QGRRRYDRKQ G+GGQTKPIFRKK
Sbjct: 4   TSVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKK 63

Query: 62  AKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           AKTTKKIVLRMECTECKYRKQ PLKRCKHFELGGDKKRK Q
Sbjct: 64  AKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ 104

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909939|emb|CAJ17456.1| ribosomal protein L44e [Hister sp. APV-2005]

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 95/99 (95%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPKQRRTFCKKCK+HK+HKVTQYKKSKER A QGRRRYDRKQ GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKQRRTFCKKCKVHKLHKVTQYKKSKERHASQGRRRYDRKQQGYGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKKIVLRMEC+ECKYRKQ+PLKRCKHFELGGDKKRK Q
Sbjct: 62  TTKKIVLRMECSECKYRKQIPLKRCKHFELGGDKKRKGQ 100

Source: Hister sp. APV-2005

Species: Hister sp. APV-2005

Genus: Hister

Family: Histeridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080271|ref|XP_973623.1| PREDICTED: similar to ribosomal protein L44e [Tribolium castaneum] gi|70909929|emb|CAJ17451.1| ribosomal protein L44e [Agriotes lineatus] gi|70909933|emb|CAJ17453.1| ribosomal protein L44e [Dascillus cervinus] gi|270005697|gb|EFA02145.1| hypothetical protein TcasGA2_TC007795 [Tribolium castaneum]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 95/99 (95%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPKQRRTFCKKCK+HK+HKVTQYKKSKER A QGRRRYDRKQ G+GGQTKPIFRKKAK
Sbjct: 2   VNVPKQRRTFCKKCKVHKLHKVTQYKKSKERHASQGRRRYDRKQQGFGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKKIVLRMECTECKYRKQ+PLKRCKHFELGGDKKRK Q
Sbjct: 62  TTKKIVLRMECTECKYRKQIPLKRCKHFELGGDKKRKGQ 100

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181094|gb|EFN68839.1| 60S ribosomal protein L44 [Camponotus floridanus]

 Score =  181 bits (458), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 94/99 (94%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPKQRRTFCKKCK+HK HKVTQYKKSKER A QGRRRYDRKQ G+GGQTKPIFRKKAK
Sbjct: 2   VNVPKQRRTFCKKCKVHKTHKVTQYKKSKERHASQGRRRYDRKQQGFGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKKIVLRMECTECKYRKQ+PLKRCKHFELGGDKKRK Q
Sbjct: 62  TTKKIVLRMECTECKYRKQIPLKRCKHFELGGDKKRKGQ 100

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241669024|gb|ACS68170.1| TA01007p [Drosophila melanogaster]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 94/99 (94%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPKQRRTFCKKCK+HK+HKVTQYKKSKERK  QGRRRYDRKQ G+GGQTKPIFRKKAK
Sbjct: 10  VNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAK 69

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKKIVLRMECTECKYRKQ PLKRCKHFELGGDKKRK Q
Sbjct: 70  TTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ 108

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|38047529|gb|AAR09667.1| similar to Drosophila melanogaster CG7424, partial [Drosophila yakuba]

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/99 (91%), Positives = 94/99 (94%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPKQRRTFCKKCK+HK+HKVTQYKKSKERK  QGRRRYDRKQ G+GGQTKPIFRKKAK
Sbjct: 1   VNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAK 60

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKKIVLRMECTECKYRKQ PLKRCKHFELGGDKKRK Q
Sbjct: 61  TTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ 99

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
FB|FBgn0031980	104	RpL36A "Ribosomal protein L36A	0.942	0.951	0.818	3.7e-39
WB|WBGene00004454	105	rpl-41 [Caenorhabditis elegans	0.942	0.942	0.73	1.3e-34
UNIPROTKB|H0Y5B4	131	RPL36A "60S ribosomal protein	0.952	0.763	0.676	7.7e-32
UNIPROTKB|Q969Q0	106	RPL36AL "60S ribosomal protein	0.942	0.933	0.683	9.8e-32
UNIPROTKB|J3KQN4	142	RPL36A "60S ribosomal protein	0.961	0.711	0.669	1.3e-31
UNIPROTKB|H7BZ11	129	H7BZ11 "Uncharacterized protei	0.952	0.775	0.666	1.6e-31
UNIPROTKB|G3N2Y0	129	RPL36AL "Uncharacterized prote	0.942	0.767	0.673	2e-31
UNIPROTKB|Q3SZ59	106	RPL36A "60S ribosomal protein	0.942	0.933	0.673	2e-31
UNIPROTKB|D0VWQ4	106	Rpl36a "60S ribosomal protein	0.942	0.933	0.673	2e-31
UNIPROTKB|P83881	106	RPL36A "60S ribosomal protein	0.942	0.933	0.673	2e-31

FB|FBgn0031980 RpL36A "Ribosomal protein L36A" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 81/99 (81%), Positives = 82/99 (82%)

Query:     4 VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
             VNVPKQRRTF            TQYKKSKERK  QGRRRYDRKQ G+GGQTKPIFRKKAK
Sbjct:     2 VNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAK 61

Query:    64 TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
             TTKKIVLRMECTECKYRKQ PLKRCKHFELGGDKKRK Q
Sbjct:    62 TTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ 100

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

WB|WBGene00004454 rpl-41 [Caenorhabditis elegans (taxid:6239)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 73/100 (73%), Positives = 79/100 (79%)

Query:     4 VNVPKQRRTFXXXX-XXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKA 62
             VNVPK RRTF             TQYKK KE K  QGRRRYDRKQ+G+GGQTKPIFRKKA
Sbjct:     2 VNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKA 61

Query:    63 KTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
             KTTKKIVLRMECTECK++KQLP+KRCKHFELGG KK + Q
Sbjct:    62 KTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQ 101

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

UNIPROTKB|H0Y5B4 RPL36A "60S ribosomal protein L36a" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 69/102 (67%), Positives = 77/102 (75%)

Query:     2 SHVNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
             S VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKK
Sbjct:    19 SMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKK 78

Query:    62 AKTTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKV 101
             AKTTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRKV
Sbjct:    79 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKV 120

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q969Q0 RPL36AL "60S ribosomal protein L36a-like" [Homo sapiens (taxid:9606)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 69/101 (68%), Positives = 76/101 (75%)

Query:     4 VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
             VNVPK RRTF            TQYKK K+    QGRRRYDRKQ+GYGGQTKPIFRKKAK
Sbjct:     2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAK 61

Query:    64 TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQ 102
             TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q
Sbjct:    62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQ 102

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|J3KQN4 RPL36A "60S ribosomal protein L36a" [Homo sapiens (taxid:9606)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 69/103 (66%), Positives = 77/103 (74%)

Query:     2 SHVNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
             S VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKK
Sbjct:    36 SMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKK 95

Query:    62 AKTTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQ 102
             AKTTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q
Sbjct:    96 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQ 138

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|H7BZ11 H7BZ11 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 68/102 (66%), Positives = 77/102 (75%)

Query:     2 SHVNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
             S VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKK
Sbjct:    11 SMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKK 70

Query:    62 AKTTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKV 101
             AKTTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK+
Sbjct:    71 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKL 112

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|G3N2Y0 RPL36AL "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/101 (67%), Positives = 76/101 (75%)

Query:     4 VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
             VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct:    25 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 84

Query:    64 TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQ 102
             TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q
Sbjct:    85 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQ 125

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q3SZ59 RPL36A "60S ribosomal protein L36a" [Bos taurus (taxid:9913)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/101 (67%), Positives = 76/101 (75%)

Query:     4 VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
             VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct:     2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query:    64 TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQ 102
             TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q
Sbjct:    62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQ 102

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|D0VWQ4 Rpl36a "60S ribosomal protein L36a" [Canis lupus familiaris (taxid:9615)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/101 (67%), Positives = 76/101 (75%)

Query:     4 VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
             VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct:     2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query:    64 TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQ 102
             TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q
Sbjct:    62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQ 102

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P83881 RPL36A "60S ribosomal protein L36a" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/101 (67%), Positives = 76/101 (75%)

Query:     4 VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
             VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct:     2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query:    64 TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQ 102
             TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q
Sbjct:    62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQ 102

GO:0005840 "ribosome" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CQ51	RL44_CRYNB	No assigned EC number	0.7070	0.9238	0.9150	N/A	N/A
P0CQ50	RL44_CRYNJ	No assigned EC number	0.7070	0.9238	0.9150	yes	N/A
B8D537	RL44E_DESK1	No assigned EC number	0.4315	0.8761	0.8932	yes	N/A
A9L948	RL36A_PAPAN	No assigned EC number	0.6862	0.9523	0.9433	N/A	N/A
Q9UWE4	RL44_COPCI	No assigned EC number	0.7171	0.9238	0.9150	N/A	N/A
Q8SR18	RL44_ENCCU	No assigned EC number	0.6176	0.9714	0.9807	yes	N/A
P83884	RL36A_PIG	No assigned EC number	0.7450	0.9523	0.9433	yes	N/A
P83883	RL36A_RAT	No assigned EC number	0.7450	0.9523	0.9433	yes	N/A
P83882	RL36A_MOUSE	No assigned EC number	0.7450	0.9523	0.9433	yes	N/A
P83881	RL36A_HUMAN	No assigned EC number	0.7450	0.9523	0.9433	no	N/A
Q9NB33	RL44_AEDTR	No assigned EC number	0.8989	0.9428	0.9519	N/A	N/A
Q9HIX1	RL44E_THEAC	No assigned EC number	0.3888	0.8571	0.9677	yes	N/A
Q8U475	RL44E_PYRFU	No assigned EC number	0.4324	0.7047	0.7872	yes	N/A
P31866	RL44_PICGU	No assigned EC number	0.6862	0.9523	0.9433	N/A	N/A
F2L1X6	RL44E_THEU7	No assigned EC number	0.3902	0.7809	0.9761	yes	N/A
P52809	RL44_CYBJA	No assigned EC number	0.6960	0.9523	0.9433	N/A	N/A
O97231	RL44_PLAF7	No assigned EC number	0.6632	0.9238	0.9326	yes	N/A
Q3SZ59	RL36A_BOVIN	No assigned EC number	0.7450	0.9523	0.9433	yes	N/A
Q6CFS7	RL44_YARLI	No assigned EC number	0.6764	0.9523	0.9433	yes	N/A
P0CX27	RL44A_YEAST	No assigned EC number	0.6764	0.9523	0.9433	yes	N/A
D0VWQ4	RL36A_CANFA	No assigned EC number	0.7450	0.9523	0.9433	no	N/A
P17843	RL44_TRYBB	No assigned EC number	0.5979	0.9047	0.8962	N/A	N/A
Q5R9D2	RL36L_PONAB	No assigned EC number	0.7450	0.9523	0.9433	no	N/A
P61487	RL36A_ICTPU	No assigned EC number	0.7450	0.9523	0.9433	N/A	N/A
P61486	RL36A_TAKRU	No assigned EC number	0.7450	0.9523	0.9433	N/A	N/A
P61485	RL36A_DANRE	No assigned EC number	0.7450	0.9523	0.9433	yes	N/A
Q969Q0	RL36L_HUMAN	No assigned EC number	0.7549	0.9523	0.9433	no	N/A
P90702	RL44_BRUMA	No assigned EC number	0.7821	0.9523	0.9523	N/A	N/A
O23290	RL36A_ARATH	No assigned EC number	0.6868	0.9238	0.9238	yes	N/A
Q754N8	RL44_ASHGO	No assigned EC number	0.6862	0.9523	0.9433	yes	N/A
Q9UVB8	RL44_WICCF	No assigned EC number	0.6764	0.9523	0.9433	N/A	N/A
A8PCG3	RL44_COPC7	No assigned EC number	0.7171	0.9238	0.9150	N/A	N/A
Q6BLK0	RL44_DEBHA	No assigned EC number	0.6960	0.9523	0.9433	yes	N/A
P31028	RL44_SCHOC	No assigned EC number	0.6764	0.9523	0.9433	N/A	N/A
O59870	RL44_PHARH	No assigned EC number	0.7272	0.9238	0.9150	N/A	N/A
P49213	RL44_CHLRE	No assigned EC number	0.6979	0.9142	0.9696	N/A	N/A
Q00477	RL44P_CANMA	No assigned EC number	0.6764	0.9523	0.9433	N/A	N/A
P31027	RL44_KLULA	No assigned EC number	0.6666	0.9523	0.9433	yes	N/A
P54027	RL44E_METJA	No assigned EC number	0.4189	0.6952	0.7765	yes	N/A
P48166	RL44_CAEEL	No assigned EC number	0.7920	0.9523	0.9523	yes	N/A
Q96499	RL44_GOSHI	No assigned EC number	0.6868	0.9238	0.9238	N/A	N/A
P27075	RL44_CANTR	No assigned EC number	0.6666	0.9523	0.9433	N/A	N/A
P27076	RL44_KLUMA	No assigned EC number	0.6666	0.9523	0.9433	N/A	N/A
Q55CW5	RL36A_DICDI	No assigned EC number	0.6907	0.9142	0.9320	no	N/A
Q9YF00	RL44E_AERPE	No assigned EC number	0.4482	0.8285	0.9157	yes	N/A
P0CX28	RL44B_YEAST	No assigned EC number	0.6764	0.9523	0.9433	yes	N/A
P27074	RL44Q_CANMA	No assigned EC number	0.6666	0.9523	0.9433	N/A	N/A
Q9UTI8	RL44_SCHPO	No assigned EC number	0.6767	0.9238	0.9150	yes	N/A
Q4PNY0	RL44_CANGY	No assigned EC number	0.7070	0.9238	0.9150	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
PTZ00157	84	PTZ00157, PTZ00157, 60S ribosomal protein L36a; Pr	3e-28
pfam00935	77	pfam00935, Ribosomal_L44, Ribosomal protein L44	4e-25
COG1631	94	COG1631, RPL42A, Ribosomal protein L44E [Translati	3e-24
PRK05767	92	PRK05767, rpl44e, 50S ribosomal protein L44e; Vali	4e-16

>gnl|CDD|240296 PTZ00157, PTZ00157, 60S ribosomal protein L36a; Provisional

 Score = 97.6 bits (243), Expect = 3e-28
 Identities = 60/83 (72%), Positives = 70/83 (84%)

Query: 4  VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
          VNVPK R+T+CKKC  H  HKV+QYKK KE    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2  VNVPKNRKTYCKKCGKHTSHKVSQYKKGKESLFAQGKRRYDRKQSGYGGQTKPIFRKKAK 61

Query: 64 TTKKIVLRMECTECKYRKQLPLK 86
          TTKKIVL++ECT+CK ++Q  LK
Sbjct: 62 TTKKIVLKLECTKCKSKRQKVLK 84

Length = 84

>gnl|CDD|144512 pfam00935, Ribosomal_L44, Ribosomal protein L44

 Score = 89.2 bits (222), Expect = 4e-25
 Identities = 51/76 (67%), Positives = 54/76 (71%)

Query: 20 HKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKY 79
          H  HKV QYKK K     QG+RRYDRKQ GYGGQTKP+  KKAK TKKIVLR+ CTECK 
Sbjct: 2  HTEHKVEQYKKGKASLLAQGKRRYDRKQKGYGGQTKPVPGKKAKPTKKIVLRLRCTECKK 61

Query: 80 RKQLPLKRCKHFELGG 95
            Q P KRCK FEL  
Sbjct: 62 AHQRPGKRCKKFELVE 77

Length = 77

>gnl|CDD|224546 COG1631, RPL42A, Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]

 Score = 87.5 bits (217), Expect = 3e-24
 Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)

Query: 4  VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
          + +PK+RRT+C  CK H +HKV + KK K  +   G+RRY RKQ+GYGGQ +P+ + KAK
Sbjct: 1  MKIPKKRRTYCPYCKKHTIHKVERVKKGKASELAWGQRRYRRKQSGYGGQPRPVPKGKAK 60

Query: 64 TTKKIVLRMECTECKYRKQL-PLKRCKHFELGG 95
           TKK+ LR+ CTEC    Q  P  R K FEL  
Sbjct: 61 PTKKVDLRLRCTECGKAHQRTPGFRAKRFELVE 93

Length = 94

>gnl|CDD|180247 PRK05767, rpl44e, 50S ribosomal protein L44e; Validated

 Score = 66.9 bits (164), Expect = 4e-16
 Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 1/89 (1%)

Query: 5  NVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKT 64
           +PK+ RT+C  CK H  H+V + KK K  +   G+R+Y RK  GYGG+  P+    AK 
Sbjct: 2  KMPKKIRTYCPYCKTHTEHEVEKVKKGKRSELKWGQRQYRRKTIGYGGKFSPVP-GGAKP 60

Query: 65 TKKIVLRMECTECKYRKQLPLKRCKHFEL 93
          TKK+ LR  CTEC         R K FEL
Sbjct: 61 TKKVDLRYRCTECGKAHTREGFRAKKFEL 89

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PRK05767	92	rpl44e 50S ribosomal protein L44e; Validated	100.0
KOG3464|consensus	106		100.0
PTZ00157	84	60S ribosomal protein L36a; Provisional	100.0
COG1631	94	RPL42A Ribosomal protein L44E [Translation, riboso	100.0
PF00935	77	Ribosomal_L44: Ribosomal protein L44; InterPro: IP	100.0
PRK00504	50	rpmG 50S ribosomal protein L33; Validated	96.07
CHL00104	66	rpl33 ribosomal protein L33	95.7
TIGR01023	54	rpmG_bact ribosomal protein L33, bacterial type. T	95.47
COG0267	50	RpmG Ribosomal protein L33 [Translation, ribosomal	95.45
PF00471	48	Ribosomal_L33: Ribosomal protein L33; InterPro: IP	95.43
PRK00595	53	rpmG 50S ribosomal protein L33; Validated	95.4
PF08772	73	NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon lik	89.97

>PRK05767 rpl44e 50S ribosomal protein L44e; Validated

Probab=100.00  E-value=1e-52  Score=292.06  Aligned_cols=91  Identities=43%  Similarity=0.690  Sum_probs=89.9

Q ss_pred             cccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEecccccccee
Q psy6045           4 VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQL   83 (105)
Q Consensus         4 m~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~~   83 (105)
                      ||||++++||||+|++||+|+||||++|++|++|||+|||||+|+|||||++|||+ +|||||||||+|+|++|++++++
T Consensus         1 m~~PK~~~tyCp~CkkHt~HkV~qyKkGK~s~~a~G~Rry~Rkq~GygGq~kpv~~-~aK~TKKi~Lr~~C~~C~~~~~~   79 (92)
T PRK05767          1 MKMPKKIRTYCPYCKTHTEHEVEKVKKGKRSELKWGQRQYRRKTIGYGGKFSPVPG-GAKPTKKVDLRYRCTECGKAHTR   79 (92)
T ss_pred             CCCCccccccCcCCCCcccEEEEEEecCCcChhHHhhhHHHhhccccCCcCCcccC-CCccceeEEEEEEecccChhhcc
Confidence            89999999999999999999999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             cceeeeeeEecc
Q psy6045          84 PLKRCKHFELGG   95 (105)
Q Consensus        84 ~~~R~KkfElg~   95 (105)
                      +++||++|||++
T Consensus        80 ~~~R~k~fEl~e   91 (92)
T PRK05767         80 EGFRAKKFELVE   91 (92)
T ss_pred             ccceeeeEEEec
Confidence            999999999985

>KOG3464|consensus

Probab=100.00  E-value=4.4e-52  Score=293.40  Aligned_cols=102  Identities=75%  Similarity=1.209  Sum_probs=100.1

Q ss_pred             ccccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEecc--cccc
Q psy6045           3 HVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTE--CKYR   80 (105)
Q Consensus         3 mm~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~e--C~~~   80 (105)
                      |||||++++|||++|++|+.|+|+||++|++|++|||.|||||+|+||||||+|||+++|||||||||||||.|  |.+.
T Consensus         1 mvnvpkT~~tfc~kc~kh~~hkVtq~k~gk~s~~aQgkr~YdrkqsGygGQTKpIf~KkaKtTKKiVlrLec~e~~Cksk   80 (106)
T KOG3464|consen    1 MVNVPKTRKTFCKKCGKHTAHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECCEPKCKSK   80 (106)
T ss_pred             CCccCCCCcchhhhhcccchhhhhhhhhcccchHhhcCcccccccCCCCccccHHHHHHhhhhhhheeeeeeecccccch
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999664  9999


Q ss_pred             ceecceeeeeeEeccceeccCccc
Q psy6045          81 KQLPLKRCKHFELGGDKKRKVQTK  104 (105)
Q Consensus        81 ~~~~~~R~KkfElg~~kk~~~~~~  104 (105)
                      +|++++||+|||||||++++|++|
T Consensus        81 ~~l~iKrcKhfelGg~kk~kg~~i  104 (106)
T KOG3464|consen   81 RQLAIKRCKHFELGGDKKRKGQAI  104 (106)
T ss_pred             hhhhhhhhceeeecCccccccccc
Confidence            999999999999999999999998

>PTZ00157 60S ribosomal protein L36a; Provisional

Probab=100.00  E-value=3.5e-49  Score=270.64  Aligned_cols=84  Identities=71%  Similarity=1.147  Sum_probs=82.4

Q ss_pred             ccccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEeccccccce
Q psy6045           3 HVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQ   82 (105)
Q Consensus         3 mm~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~   82 (105)
                      |||||++++||||+|++||+|+||||++|++|++|||+|||||+|+|||||++|||+++|||||||||+|+|++|+++++
T Consensus         1 mv~~PK~~~tyC~~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~~kaK~TKKi~Lrl~C~~C~~~~~   80 (84)
T PTZ00157          1 MVNVPKNRKTYCKKCGKHTSHKVSQYKKGKESLFAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLKLECTKCKSKRQ   80 (84)
T ss_pred             CCcccccccccCcCCCCCccEEEEEeccCCcChhHHhhhhhhhhccCcCCcCccccCccccccceeEEEEEecccCceeE
Confidence            99999999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             ecce
Q psy6045          83 LPLK   86 (105)
Q Consensus        83 ~~~~   86 (105)
                      .+++
T Consensus        81 ~~~k   84 (84)
T PTZ00157         81 KVLK   84 (84)
T ss_pred             eccC
Confidence            8874

>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.8e-49  Score=272.65  Aligned_cols=93  Identities=51%  Similarity=0.869  Sum_probs=90.9

Q ss_pred             cccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEecccccccee
Q psy6045           4 VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQL   83 (105)
Q Consensus         4 m~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~~   83 (105)
                      |||||+++||||+|++||.|+||+|++|++|+|+||+|||+|+|+|||||++|+|.++|||||||||+|+|++||++|++
T Consensus         1 mkiPK~~~tyCp~CkkhT~H~V~~~kkgk~s~l~~gqRr~~R~~~GyGg~~rp~p~g~~KptKKv~Lr~~Ct~Cgkah~~   80 (94)
T COG1631           1 MKIPKKRRTYCPYCKKHTIHKVERVKKGKASELAWGQRRYRRKQSGYGGQPRPVPKGKAKPTKKVDLRLRCTECGKAHQR   80 (94)
T ss_pred             CCCCcceeecCcccccceeeeeeehhcCCcchhhHHHHHHHHHhcccCCcCCcccCccCCccceEEEEEEehhhcccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -cceeeeeeEeccc
Q psy6045          84 -PLKRCKHFELGGD   96 (105)
Q Consensus        84 -~~~R~KkfElg~~   96 (105)
                       +++|+++|||+++
T Consensus        81 ~~~~Rakr~Elve~   94 (94)
T COG1631          81 TPGFRAKRFELVEE   94 (94)
T ss_pred             CcceeeeeEEEecC
Confidence             5999999999864

>PF00935 Ribosomal_L44: Ribosomal protein L44; InterPro: IPR000552 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8e-42  Score=230.84  Aligned_cols=77  Identities=69%  Similarity=1.052  Sum_probs=62.1

Q ss_pred             CccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEeccccccceecceeeeeeEecc
Q psy6045          19 IHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQLPLKRCKHFELGG   95 (105)
Q Consensus        19 kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~~~~~R~KkfElg~   95 (105)
                      +||+|+|+||++|++|++|||+|||||+|+|||||++|+|+++|||||||||+|+|++|+++++++++||++|||+.
T Consensus         1 kHt~HkV~~yKkgK~s~~a~G~Rry~Rk~~GygGq~kp~~~~kaK~TKKi~Lrl~C~~C~~~~~~~~~R~kkfEl~E   77 (77)
T PF00935_consen    1 KHTEHKVSQYKKGKASPLAQGKRRYDRKQKGYGGQTKPVFRKKAKTTKKIVLRLECTECGKAHMRPGKRCKKFELVE   77 (77)
T ss_dssp             EEEEEEEEE---S--SSTSHHHHHHHHTSSSSSSCCSSS-S----SSEBBEEEEEETTTS-EEEEE-BBESS-EEC-
T ss_pred             CCcceEEEEeccCCcChHHHhhhhhhhhccccCCccccccccCCcccccEEEEEEeCCCCcccccccceeEEEEecC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999973

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of mammalian [], Trypanosoma brucei, Caenorhabditis elegans and fungal L44, and Haloarcula marismortui LA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_r 1S1I_Z 3O5H_f 3O58_f 3IZR_r 1M1K_4 3CCQ_3 3CCL_3 3CME_3 1K73_4 ....

>PRK00504 rpmG 50S ribosomal protein L33; Validated

Probab=96.07  E-value=0.0033  Score=39.55  Aligned_cols=16  Identities=38%  Similarity=1.045  Sum_probs=14.4

Q ss_pred             eeeecCcCCCCccceE
Q psy6045           9 QRRTFCKKCKIHKVHK   24 (105)
Q Consensus         9 ~~~tyCp~C~kHt~Hk   24 (105)
                      ..+-|||.|++||.|+
T Consensus        32 elkKycp~c~khtlhk   47 (50)
T PRK00504         32 ELKKFCPRCNKHTLHK   47 (50)
T ss_pred             EEECcCCCCCCeEeee
Confidence            4678999999999997

>CHL00104 rpl33 ribosomal protein L33

Probab=95.70  E-value=0.0056  Score=40.53  Aligned_cols=17  Identities=35%  Similarity=0.821  Sum_probs=14.7

Q ss_pred             eeeecCcCCCCccceEE
Q psy6045           9 QRRTFCKKCKIHKVHKV   25 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV   25 (105)
                      +.+-|||.|++||.|+=
T Consensus        47 elkKycp~c~kHtlhkE   63 (66)
T CHL00104         47 ELKKFCPYCYKHTIHKE   63 (66)
T ss_pred             EEECcCCCCCCEeeEee
Confidence            46789999999999974

>TIGR01023 rpmG_bact ribosomal protein L33, bacterial type

Probab=95.47  E-value=0.008  Score=38.18  Aligned_cols=17  Identities=35%  Similarity=0.864  Sum_probs=14.9

Q ss_pred             eeeecCcCCCCccceEE
Q psy6045           9 QRRTFCKKCKIHKVHKV   25 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV   25 (105)
                      ..+-|||.|++|+.|+-
T Consensus        36 ~lkKycp~~~khtlhkE   52 (54)
T TIGR01023        36 ELRKYCPVCRKHVLHKE   52 (54)
T ss_pred             EEECcCCCCCCeEeEEe
Confidence            46789999999999974

This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents.

>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]

Probab=95.45  E-value=0.0075  Score=38.15  Aligned_cols=17  Identities=29%  Similarity=0.860  Sum_probs=14.7

Q ss_pred             eeeecCcCCCCccceEE
Q psy6045           9 QRRTFCKKCKIHKVHKV   25 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV   25 (105)
                      +.+-|||.|++||.|+=
T Consensus        32 elkKycp~~~khtlhkE   48 (50)
T COG0267          32 ELKKYCPVCRKHTLHKE   48 (50)
T ss_pred             EEEecCcccccEEEEee
Confidence            46789999999999973

>PF00471 Ribosomal_L33: Ribosomal protein L33; InterPro: IPR001705 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.43  E-value=0.0074  Score=37.45  Aligned_cols=16  Identities=31%  Similarity=1.045  Sum_probs=14.2

Q ss_pred             eeeecCcCCCCccceE
Q psy6045           9 QRRTFCKKCKIHKVHK   24 (105)
Q Consensus         9 ~~~tyCp~C~kHt~Hk   24 (105)
                      ..+-|||.|++||.|+
T Consensus        30 ~lkKycp~~~khtlhk   45 (48)
T PF00471_consen   30 ELKKYCPRCRKHTLHK   45 (48)
T ss_dssp             EEEEEETSSSSEEEEE
T ss_pred             eEeccCCCCCCEecEE
Confidence            4678999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L33 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L33 has been shown to be on the surface of 50S subunit. L33 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , ], groups: Eubacterial L33. Algal and plant chloroplast L33. Cyanelle L33. L33 is a small protein of 49 to 66 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3PIO_1 3PIP_1 3PYT_3 3MS1_3 3F1F_6 3F1H_6 3MRZ_3 3PYO_3 3D5B_6 3D5D_6 ....

>PRK00595 rpmG 50S ribosomal protein L33; Validated

Probab=95.40  E-value=0.0086  Score=37.80  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=14.7

Q ss_pred             eeeecCcCCCCccceEE
Q psy6045           9 QRRTFCKKCKIHKVHKV   25 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV   25 (105)
                      ..+-|||.|++|+.|+-
T Consensus        35 ~lkKycp~~~khtlhkE   51 (53)
T PRK00595         35 ELKKYDPVLRKHVLHKE   51 (53)
T ss_pred             EEECcCCCCCCEEeEEe
Confidence            45789999999999974

>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1

Probab=89.97  E-value=0.2  Score=33.65  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=10.9

Q ss_pred             CceeeecCcCCCCccceEEEEee
Q psy6045           7 PKQRRTFCKKCKIHKVHKVTQYK   29 (105)
Q Consensus         7 PK~~~tyCp~C~kHt~HkV~qyK   29 (105)
                      +..-+-|||+|+.+|..+|+-+=
T Consensus        20 ~~~~k~FCp~CGn~TL~rvsvsv   42 (73)
T PF08772_consen   20 KDMTKQFCPKCGNATLKRVSVSV   42 (73)
T ss_dssp             S-SS--S-SSS--S--EEEE-B-
T ss_pred             CCCCceeCcccCCCcceEEEEEE
Confidence            34557899999999999998764

; PDB: 2CON_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
2zkr_4	106	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-30
3izr_r	105	Localization Of The Large Subunit Ribosomal Protein		2e-27
3izs_r	106	Localization Of The Large Subunit Ribosomal Protein		4e-22
1s1i_Z	105	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		5e-22
3j0l_F	95	Core Of Mammalian 80s Pre-Ribosome In Complex With		1e-20
3zf7_t	106	High-resolution Cryo-electron Microscopy Structure		5e-20
3jyw_Z	92	Structure Of The 60s Proteins For Eukaryotic Riboso		6e-19
4a18_C	109	T.Thermophila 60s Ribosomal Subunit In Complex With		6e-18

>pdb|2ZKR|4 Chain 4, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 106

Iteration: 1
 Score =  126 bits (317), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 76/102 (74%), Gaps = 2/102 (1%)
Query: 4   VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           VNVPK RRTF            TQYKK K+    QG+RRYDRKQ+GYGGQTKPIFRKKAK
Sbjct: 2   VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK 61
Query: 64  TTKKIVLRMECTE--CKYRKQLPLKRCKHFELGGDKKRKVQT 103
           TTKKIVLR+EC E  C+ ++ L +KRCKHFELGGDKKRK Q 
Sbjct: 62  TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQV 103

>pdb|3IZR|RR Chain r, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 105

Iteration: 1
 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 73/99 (73%), Gaps = 2/99 (2%)
Query: 4   VNVPKQRRTFXXXXX--XXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
           VNVPK ++T+              TQYKK K+  + QG+RRYDRKQ+GYGGQTKP+F KK
Sbjct: 2   VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 61
Query: 62  AKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRK 100
           AKTTKKIVL+++C  CK+  Q P+KRCKHFE+GGDKK K
Sbjct: 62  AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGK 100

>pdb|3IZS|RR Chain r, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 106

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 4   VNVPKQRRTFXXXXX--XXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
           VNVPK R+T+              TQYK  K     QG+RRYDRKQ+G+GGQTKP+F KK
Sbjct: 2   VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 61
Query: 62  AKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQT 103
           AKTTKK+VLR+EC +CK R QL LKRCKHFELGG+KK+K Q 
Sbjct: 62  AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQA 103

>pdb|1S1I|Z Chain Z, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 105

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 4   VNVPKQRRTFXXXXX--XXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
           VNVPK R+T+              TQYK  K     QG+RRYDRKQ+G+GGQTKP+F KK
Sbjct: 1   VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 60
Query: 62  AKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQT 103
           AKTTKK+VLR+EC +CK R QL LKRCKHFELGG+KK+K Q 
Sbjct: 61  AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQA 102

>pdb|3J0L|F Chain F, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 95

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Query: 4  VNVPKQRRTFXXXXX--XXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
          VNVPK R+T+              TQYK  K     QG+RRYDRKQ+G+GGQTKP+F KK
Sbjct: 1  VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 60
Query: 62 AKTTKKIVLRMECTECKYRKQLPLKRCKHFELGGD 96
          AKTTKK+VLR+EC +CK R QL LKRCKHFELGG+
Sbjct: 61 AKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGE 95

>pdb|3ZF7|TT Chain t, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 106

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 55/73 (75%)
Query: 26 TQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQLPL 85
           QYK  K R   +G+RRYDRKQ+GYGGQTKPIF KKAKTTKKIVL+++C+ CK   Q  L
Sbjct: 26 VQYKAGKARLYARGKRRYDRKQSGYGGQTKPIFHKKAKTTKKIVLKLQCSNCKSIIQNVL 85
Query: 86 KRCKHFELGGDKK 98
          KR KHFEL   KK
Sbjct: 86 KRTKHFELNDKKK 98

>pdb|3JYW|Z Chain Z, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 92

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 4  VNVPKQRRTFXXXXX--XXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKK 61
          VNVPK R+T+              TQYK  K     QG+RRYDRKQ+G+GGQTKP+F KK
Sbjct: 1  VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKK 60
Query: 62 AKTTKKIVLRMECTECKYRKQLPLKRCKHFEL 93
          AKTTKK+VLR+EC +CK R QL LKRCKHFEL
Sbjct: 61 AKTTKKVVLRLECVKCKTRAQLTLKRCKHFEL 92

>pdb|4A18|C Chain C, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 109

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 62/86 (72%)
Query: 4  VNVPKQRRTFXXXXXXXXXXXXTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
          V VPK R+T+            +QYKKSKE    QGRRRYD KQ+G+GGQTKPIFRKKAK
Sbjct: 2  VQVPKTRKTYCKKCNSHTNHKVSQYKKSKESTHAQGRRRYDMKQSGFGGQTKPIFRKKAK 61
Query: 64 TTKKIVLRMECTECKYRKQLPLKRCK 89
          TTKK+ L+ +CT CK ++ +P+KRCK
Sbjct: 62 TTKKVALKFDCTTCKTKRVIPIKRCK 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
4a18_C	109	60S ribosomal protein L36A; ribosome, eukaryotic i	4e-26
1vq8_3	92	50S ribosomal protein L44E; ribosome 50S, protein-	4e-25
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	3e-24

>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C Length = 109

 Score = 92.3 bits (229), Expect = 4e-26
 Identities = 59/99 (59%), Positives = 72/99 (72%)

Query: 4   VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
           V VPK R+T+CKKC  H  HKV+QYKKSKE    QGRRRYD KQ+G+GGQTKPIFRKKAK
Sbjct: 2   VQVPKTRKTYCKKCNSHTNHKVSQYKKSKESTHAQGRRRYDMKQSGFGGQTKPIFRKKAK 61

Query: 64  TTKKIVLRMECTECKYRKQLPLKRCKHFELGGDKKRKVQ 102
           TTKK+ L+ +CT CK ++ +P+KRCK        + K  
Sbjct: 62  TTKKVALKFDCTTCKTKRVIPIKRCKTIVFMDITQIKKA 100

>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ... Length = 92

 Score = 89.4 bits (222), Expect = 4e-25
 Identities = 19/90 (21%), Positives = 33/90 (36%)

Query: 4  VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAK 63
          + +P++  T+C  C  H+ H+V + +  ++       R+ +R                 K
Sbjct: 1  MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDK 60

Query: 64 TTKKIVLRMECTECKYRKQLPLKRCKHFEL 93
           TKK  L+  C EC         R    E 
Sbjct: 61 PTKKTDLKYRCGECGKAHLREGWRAGRLEF 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3iz5_r	105	60S ribosomal protein L42 (L44E); eukaryotic ribos	100.0
4a18_C	109	60S ribosomal protein L36A; ribosome, eukaryotic i	100.0
1vq8_3	92	50S ribosomal protein L44E; ribosome 50S, protein-	100.0
3j21_j	94	50S ribosomal protein L44E; archaea, archaeal, KIN	100.0
3v2d_6	54	50S ribosomal protein L33; ribosome associated inh	95.99
2zjr_1	55	50S ribosomal protein L33; ribosome, large ribosom	95.82
2ftc_P	52	Mitochondrial ribosomal protein L33 isoform A, mit	95.63
3bbo_3	66	Ribosomal protein L33; large ribosomal subunit, sp	95.6
3r8s_1	50	50S ribosomal protein L33; protein biosynthesis, R	95.6
1nkw_1	82	50S ribosomal protein L33; ribosome, large subunit	95.11
2k3r_A	123	Ribonuclease P protein component 4; PFU RPP21, RNA	91.33
2con_A	79	RUH-035 protein, NIN one binding protein; ribosome	84.86

>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C

Probab=100.00  E-value=1.2e-55  Score=313.27  Aligned_cols=99  Identities=60%  Similarity=1.009  Sum_probs=96.5

Q ss_pred             ccccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEeccccccce
Q psy6045           3 HVNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQ   82 (105)
Q Consensus         3 mm~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~   82 (105)
                      |||||++++||||+|++||+|+||||++|++|++|||+|||||+|+|||||++|||+++|||||||||+|+|++|++++|
T Consensus         1 mv~vPK~~~tyCpkC~kHt~HkVtqyKkGK~s~~aqGkRrydRkq~GyGGq~kpi~~~kaKtTKKivLrl~C~eC~~~~~   80 (109)
T 4a18_C            1 MVQVPKTRKTYCKKCNSHTNHKVSQYKKSKESTHAQGRRRYDMKQSGFGGQTKPIFRKKAKTTKKVALKFDCTTCKTKRV   80 (109)
T ss_dssp             -CEEESEEEEEETTTTEEEEEEEEECCCCCCCTTSHHHHHHHHHHSSSSSCCSCCCCCCCCSCCCCEEEEEETTTCCEEE
T ss_pred             CCCCCcceeecCcCCCCCcceEEEEeecccccchhhchhhhhhhcCCcCCccCCcccCCCcccceEEEEEEecccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeeeeeEeccceeccC
Q psy6045          83 LPLKRCKHFELGGDKKRKV  101 (105)
Q Consensus        83 ~~~~R~KkfElg~~kk~~~  101 (105)
                      ++++||++||||+|+|++.
T Consensus        81 ~~~kR~K~fEl~~~kk~~~   99 (109)
T 4a18_C           81 IPIKRCKTIVFMDITQIKK   99 (109)
T ss_dssp             EECCCCSCCEEECHHHHHH
T ss_pred             cccceeeeEEEccccchhh
Confidence            9999999999999998763

>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...

Probab=100.00  E-value=6e-53  Score=292.18  Aligned_cols=91  Identities=23%  Similarity=0.394  Sum_probs=89.4

Q ss_pred             cccCceeeecCcCCCCccceEEEEeecCccccccccceeeee-eccCCCCcccccccccccccceeEEEEEeccccccce
Q psy6045           4 VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDR-KQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQ   82 (105)
Q Consensus         4 m~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~R-kq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~   82 (105)
                      ||||++++||||+|++||+|+||||++|++|++|||+||||| +|+||||||+|||++ |||||||||+|+|++|++++|
T Consensus         1 m~~PK~~~tyCp~C~kHt~HkVtqyKkGK~s~~aqG~Rry~r~kq~GygGq~kpv~~~-aK~TKKi~Lrl~C~~C~~~~~   79 (92)
T 1vq8_3            1 MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGG-DKPTKKTDLKYRCGECGKAHL   79 (92)
T ss_dssp             CEEESEEEEEETTTTEEEEEEEEECCCCCCCSCSHHHHHHHHHCCSSCCGGGGCCCCC-CCSSCBCCEEEEETTTCCEEC
T ss_pred             CCCCccccccCCCCCCCccEEEEEEecCCcChhhhcchhhhhccccccCCcCCcccCC-CcccceEEEEEEecccChhhc
Confidence            899999999999999999999999999999999999999999 999999999999987 999999999999999999999


Q ss_pred             ecceeeeeeEecc
Q psy6045          83 LPLKRCKHFELGG   95 (105)
Q Consensus        83 ~~~~R~KkfElg~   95 (105)
                      ++++||++|||+.
T Consensus        80 ~~~~R~k~fEl~e   92 (92)
T 1vq8_3           80 REGWRAGRLEFQE   92 (92)
T ss_dssp             CCCCBCSCCEEEC
T ss_pred             cccceeeEEEecC
Confidence            9999999999973

>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.5e-52  Score=289.78  Aligned_cols=92  Identities=40%  Similarity=0.655  Sum_probs=90.8

Q ss_pred             cccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEecccccccee
Q psy6045           4 VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQL   83 (105)
Q Consensus         4 m~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~~   83 (105)
                      ||||++++||||+|++||+|+|+||++|++|++|||+|||||+|+||||||+|||+++|||||||||+|+|+||++++|+
T Consensus         1 M~vPK~~~tyC~~C~kHt~HkVt~yKkgK~s~~aqG~Rry~rkq~GygGq~kpv~~~~aK~TKKi~Lrl~C~eC~~~~~~   80 (94)
T 3j21_j            1 MKYPKQIRTYCPFCKKHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKPVKKLDLRFRCTECGKAHTR   80 (94)
T ss_dssp             CEECSEEEECCTTTTSCEEEEECCCCCCCCSSCSHHHHTTTTCCSSCCSTTSCCSCCCCCSSCBCCCCEEESSSCCEECC
T ss_pred             CCCCceeeecCcCCCCCcceEEEEEecccccchhhcchhhhhhccccCCccccccccCccccceEEEEEEecccCcccee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-ceeeeeeEecc
Q psy6045          84 P-LKRCKHFELGG   95 (105)
Q Consensus        84 ~-~~R~KkfElg~   95 (105)
                      + ++||++|||+.
T Consensus        81 ~~~~R~k~fEl~e   93 (94)
T 3j21_j           81 GRGFRVKKFELVE   93 (94)
T ss_dssp             CCCCBCSCCEECC
T ss_pred             ccCceeeeEEEec
Confidence            9 99999999975

>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...

Probab=95.99  E-value=0.0016  Score=40.51  Aligned_cols=18  Identities=33%  Similarity=0.837  Sum_probs=15.3

Q ss_pred             eeeecCcCCCCccceEEE
Q psy6045           9 QRRTFCKKCKIHKVHKVT   26 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV~   26 (105)
                      +.+-|||.|++||.|+=+
T Consensus        35 elkKycp~c~kHtlhkE~   52 (54)
T 3v2d_6           35 ELRKYCPWCRKHTVHREV   52 (54)
T ss_dssp             EEEEEETTTTEEEEEEEE
T ss_pred             EEeeeCCCCCCEeeEEEe
Confidence            467899999999999843

>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3

Probab=95.82  E-value=0.003  Score=39.33  Aligned_cols=18  Identities=17%  Similarity=0.224  Sum_probs=15.1

Q ss_pred             eeeecCcCCCCccceEEE
Q psy6045           9 QRRTFCKKCKIHKVHKVT   26 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV~   26 (105)
                      +.+-|||.|++||.|+=+
T Consensus        36 elkKycp~~~kHtlhkE~   53 (55)
T 2zjr_1           36 ELKKYDPVAKKHVVFREK   53 (55)
T ss_pred             EEEccCCCCCCEEeEEEe
Confidence            367899999999999743

>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P

Probab=95.63  E-value=0.0041  Score=38.25  Aligned_cols=16  Identities=6%  Similarity=-0.099  Sum_probs=14.1

Q ss_pred             eeeecCcCCCCccceE
Q psy6045           9 QRRTFCKKCKIHKVHK   24 (105)
Q Consensus         9 ~~~tyCp~C~kHt~Hk   24 (105)
                      +.+-|||.|++||.|+
T Consensus        34 elkKycp~~~khtlhk   49 (52)
T 2ftc_P           34 TLLHYDPVVKQRVLFV   49 (52)
T ss_pred             EEEccCCCCCceEeEE
Confidence            3578999999999997

>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=95.60  E-value=0.0029  Score=40.86  Aligned_cols=15  Identities=40%  Similarity=0.884  Sum_probs=13.5

Q ss_pred             eeecCcCCCCccceE
Q psy6045          10 RRTFCKKCKIHKVHK   24 (105)
Q Consensus        10 ~~tyCp~C~kHt~Hk   24 (105)
                      .+-|||+|++||.|+
T Consensus        48 lkKycp~c~kHtlhk   62 (66)
T 3bbo_3           48 LRKFCPYCYKHTIHG   62 (66)
T ss_dssp             CCCCCCSSSSCCCCC
T ss_pred             EEccCCCCCCeeeEE
Confidence            567999999999996

>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...

Probab=95.60  E-value=0.0028  Score=38.83  Aligned_cols=16  Identities=19%  Similarity=0.272  Sum_probs=14.3

Q ss_pred             eeeecCcCCCCccceE
Q psy6045           9 QRRTFCKKCKIHKVHK   24 (105)
Q Consensus         9 ~~~tyCp~C~kHt~Hk   24 (105)
                      +.+-|||.|++||.|+
T Consensus        32 elkKycp~~~khtlhk   47 (50)
T 3r8s_1           32 ELKKFDPVVRQHVIYK   47 (50)
T ss_dssp             CEEEEETTTTEEEEEE
T ss_pred             eEeeeCcCCCCEeeEE
Confidence            4678999999999997

>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6

Probab=95.11  E-value=0.0073  Score=40.68  Aligned_cols=18  Identities=17%  Similarity=0.224  Sum_probs=15.1

Q ss_pred             eeeecCcCCCCccceEEE
Q psy6045           9 QRRTFCKKCKIHKVHKVT   26 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV~   26 (105)
                      +.+-|||.|++||.|+=+
T Consensus        63 ELkKYcP~crKHtlHkEt   80 (82)
T 1nkw_1           63 ELKKYDPVAKKHVVFREK   80 (82)
T ss_pred             EEEccCCCCCCeeeEEee
Confidence            357899999999999744

>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B

Probab=91.33  E-value=0.22  Score=34.75  Aligned_cols=27  Identities=30%  Similarity=0.663  Sum_probs=13.9

Q ss_pred             EEEEEeccccccceecc------eeeeeeEecc
Q psy6045          69 VLRMECTECKYRKQLPL------KRCKHFELGG   95 (105)
Q Consensus        69 ~Lrl~C~eC~~~~~~~~------~R~KkfElg~   95 (105)
                      .|.++|..||...-.+.      .|-.+.|.||
T Consensus        87 ~vv~tCl~Cg~~kR~p~~~~~~~~r~~~~~~~~  119 (123)
T 2k3r_A           87 HIVVKCLECGHIMRYPYIKEIKKRRKEKMEYGG  119 (123)
T ss_dssp             EEEEEETTTTEEEEEECCC--------------
T ss_pred             EEEEECCCCCCEEEEecCccHHHHHHHhhhccC
Confidence            69999999998866555      4555666665

>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1

Probab=84.86  E-value=0.49  Score=31.22  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=17.7

Q ss_pred             eeeecCcCCCCccceEEEEee
Q psy6045           9 QRRTFCKKCKIHKVHKVTQYK   29 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV~qyK   29 (105)
                      .-+-|||+|+..|..+|+-+=
T Consensus        28 ~~k~FCp~CGn~TL~Rvsvsv   48 (79)
T 2con_A           28 MNRVFCGHCGNKTLKKVSVTI   48 (79)
T ss_dssp             SSCCSCSSSCCSCCEEEECBC
T ss_pred             cccccccccCcccceEEEEEE
Confidence            346899999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1vqo31	92	g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon	2e-23

>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 92

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L44e
domain: Ribosomal protein L44e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 83.6 bits (207), Expect = 2e-23
 Identities = 19/89 (21%), Positives = 32/89 (35%)

Query: 5  NVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKT 64
           +P++  T+C  C  H+ H+V + +  ++       R+ +R                 K 
Sbjct: 2  QMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKP 61

Query: 65 TKKIVLRMECTECKYRKQLPLKRCKHFEL 93
          TKK  L+  C EC         R    E 
Sbjct: 62 TKKTDLKYRCGECGKAHLREGWRAGRLEF 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1vqo31	92	Ribosomal protein L44e {Archaeon Haloarcula marism	100.0
d2j0161	45	Ribosomal protein L33p {Thermus thermophilus [TaxI	96.45
d2gyc11	52	Ribosomal protein L33p {Escherichia coli [TaxId: 5	94.46
d2zjr11	53	Ribosomal protein L33p {Deinococcus radiodurans [T	93.23
d2cona1	66	RNA-binding protein NOB1 (Nin one binding) {Mouse	90.31
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	80.25

>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L44e
domain: Ribosomal protein L44e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.5e-49  Score=273.22  Aligned_cols=92  Identities=21%  Similarity=0.312  Sum_probs=90.5

Q ss_pred             cccCceeeecCcCCCCccceEEEEeecCccccccccceeeeeeccCCCCcccccccccccccceeEEEEEecccccccee
Q psy6045           4 VNVPKQRRTFCKKCKIHKVHKVTQYKKSKERKACQGRRRYDRKQAGYGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQL   83 (105)
Q Consensus         4 m~iPK~~~tyCp~C~kHt~HkV~qyKkGK~s~~aqG~Rry~Rkq~GygGq~kpv~~k~aK~TKKi~Lrl~C~eC~~~~~~   83 (105)
                      ||||++++||||+|++||+|+|+||++|++|++|||+|||||++.|||||++|+|.++|||||||||+|+|+|||+++++
T Consensus         1 MkiPK~~~tyCp~CkkHt~HkV~~~Kkgk~s~~a~G~Rr~~Rk~~g~gg~~~~~~~~~aK~TKKi~Lr~~C~~C~k~~~~   80 (92)
T d1vqo31           1 MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLR   80 (92)
T ss_dssp             CEEESEEEEEETTTTEEEEEEEEECCCCCCCSCSHHHHHHHHHCCSSCCGGGGCCCCCCCSSCBCCEEEEETTTCCEECC
T ss_pred             CCCCcceeccCcccCCCccEEEEEeecCCCCHHHHhhHHHhhhccccCCCcCCCCCCCCCccceEEEEEEecccCcceee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeeeEecc
Q psy6045          84 PLKRCKHFELGG   95 (105)
Q Consensus        84 ~~~R~KkfElg~   95 (105)
                      +++|+++|||+.
T Consensus        81 ~~~R~kkfElve   92 (92)
T d1vqo31          81 EGWRAGRLEFQE   92 (92)
T ss_dssp             CCCBCSCCEEEC
T ss_pred             cceeeeeEEecC
Confidence            999999999963

>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L33p
domain: Ribosomal protein L33p
species: Thermus thermophilus [TaxId: 274]

Probab=96.45  E-value=0.00032  Score=41.13  Aligned_cols=16  Identities=38%  Similarity=0.980  Sum_probs=14.2

Q ss_pred             eeeecCcCCCCccceE
Q psy6045           9 QRRTFCKKCKIHKVHK   24 (105)
Q Consensus         9 ~~~tyCp~C~kHt~Hk   24 (105)
                      +.+-|||+|++||.|+
T Consensus        27 elkKycp~c~khtlHk   42 (45)
T d2j0161          27 ELRKYCPWCRKHTVHR   42 (45)
T ss_dssp             CCCCCCCSSSCCCCCC
T ss_pred             EEeccCcCCCCeecee
Confidence            4578999999999996

>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L33p
domain: Ribosomal protein L33p
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.0048  Score=36.84  Aligned_cols=16  Identities=19%  Similarity=0.272  Sum_probs=14.1

Q ss_pred             eeeecCcCCCCccceE
Q psy6045           9 QRRTFCKKCKIHKVHK   24 (105)
Q Consensus         9 ~~~tyCp~C~kHt~Hk   24 (105)
                      ..+-|||.|++|+.|+
T Consensus        34 el~Ky~p~~~khtlhk   49 (52)
T d2gyc11          34 ELKKFDPVVRQHVIYK   49 (52)
T ss_dssp             CCCCBCCSSSSSBCCC
T ss_pred             EEEccCCCCCceeeEE
Confidence            4578999999999996

>d2zjr11 g.41.8.6 (1:2-54) Ribosomal protein L33p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L33p
domain: Ribosomal protein L33p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.23  E-value=0.015  Score=34.80  Aligned_cols=17  Identities=18%  Similarity=0.235  Sum_probs=14.7

Q ss_pred             eeeecCcCCCCccceEE
Q psy6045           9 QRRTFCKKCKIHKVHKV   25 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV   25 (105)
                      ..+-|||.|++|+.|+=
T Consensus        35 el~KydP~~rkhvl~kE   51 (53)
T d2zjr11          35 ELKKYDPVAKKHVVFRE   51 (53)
T ss_pred             EEEccCCCCcceeeEEe
Confidence            56789999999999973

>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: NOB1 zinc finger-like
family: NOB1 zinc finger-like
domain: RNA-binding protein NOB1 (Nin one binding)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.31  E-value=0.07  Score=32.72  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=17.8

Q ss_pred             eeeecCcCCCCccceEEEEee
Q psy6045           9 QRRTFCKKCKIHKVHKVTQYK   29 (105)
Q Consensus         9 ~~~tyCp~C~kHt~HkV~qyK   29 (105)
                      .-+-|||+|+.+|..+|+-+=
T Consensus        21 ~~k~FCpkCGn~TL~rvsvsv   41 (66)
T d2cona1          21 MNRVFCGHCGNKTLKKVSVTI   41 (66)
T ss_dssp             SSCCSCSSSCCSCCEEEECBC
T ss_pred             cccccCcccCCCceeEEEEEE
Confidence            346899999999999998664

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.25  E-value=0.25  Score=25.20  Aligned_cols=11  Identities=27%  Similarity=0.588  Sum_probs=9.6

Q ss_pred             EEeccccccce
Q psy6045          72 MECTECKYRKQ   82 (105)
Q Consensus        72 l~C~eC~~~~~   82 (105)
                      |+|.|||++..
T Consensus         3 y~C~eCgK~F~   13 (26)
T d1x6ea2           3 YKCLECGKAFS   13 (26)
T ss_dssp             EECSSSCCEES
T ss_pred             ccCCCCcCeec
Confidence            89999999864