Psyllid ID: psy6049

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
MRLEITYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTVGKPFGSRTFKRKIKAHRSF
ccEEEEHHHHHHHccccccccccccccccccccccccccEEcccccEEEEcccccccEEEEEEEEEEcccccEEEEEEEEEEcccEEcccccccccccEEEccccccEEEEcccccccccccccccccccEEEEEcccccEEEEEEEcccccEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHEEEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccc
ccEEEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccEEEEEEEEcccccEEEEEEEEEcccEEEEcccEEEccccccccEEcHHHHEcccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccEEEccccEEEEEEEEEHHHcHHHHHHEccccccc
MRLEITYFVMVTYLpnklgihvdfntprvkfppradndniaglsgdkfkfdangdgparyniihfkemspgsyewvRVGEYVEgelrlnlsgkfgpyfveitdgmpqeiqfkaehprppesvcslpcdrgqakqylegesccwhcfnctqyheplltwtgkphyptrednLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNipeafneskhigefstvgkpfgsrtfKRKIKAHRSF
MRLEITYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEafneskhigefstvgkpfgsrtfkrkikahrsf
MRLEITYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTVGKPFGSRTFKRKIKAHRSF
***EITYFVMVTYLPNKLGIHVDFNTPRVKFPPR***DNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMP****************CSLPCDRGQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTV*******************
*RLEITYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCS*PCD*GQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTVGKPFGSRTFKRKIKAH***
MRLEITYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTVGKPFGSRTFKRKIKAHRSF
MRLEITYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTVGKPFGSRTFKRKIKA****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MRLEITYFVMVTYLPNKLGIHVDFNTPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYHEPLLTWTGKPHYPTREDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTVGKPFGSRTFKRKIKAHRSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
P41594 1212 Metabotropic glutamate re yes N/A 0.647 0.128 0.292 2e-14
P31423 912 Metabotropic glutamate re yes N/A 0.518 0.137 0.296 3e-14
P31424 1203 Metabotropic glutamate re no N/A 0.647 0.129 0.292 4e-14
Q68EF4 912 Metabotropic glutamate re yes N/A 0.518 0.137 0.296 4e-14
Q3UVX5 1203 Metabotropic glutamate re yes N/A 0.647 0.129 0.292 5e-14
Q14833 912 Metabotropic glutamate re no N/A 0.518 0.137 0.303 1e-12
Q1ZZH0 912 Metabotropic glutamate re N/A N/A 0.518 0.137 0.303 1e-12
O15303 877 Metabotropic glutamate re no N/A 0.381 0.104 0.321 1e-10
Q14831 915 Metabotropic glutamate re no N/A 0.410 0.108 0.301 3e-10
Q5RDQ8 922 Metabotropic glutamate re no N/A 0.410 0.107 0.301 3e-10
>sp|P41594|GRM5_HUMAN Metabotropic glutamate receptor 5 OS=Homo sapiens GN=GRM5 PE=1 SV=2 Back     alignment and function desciption
 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 39/195 (20%)

Query: 39  NIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYF 98
           N  G+SGD   FD NGD P RY I++FKEM    ++++ VG +  GEL+++         
Sbjct: 445 NFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDNGELKMD--------- 495

Query: 99  VEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGE-SCCWHCFNCTQYHEPLLT 157
                    + +  ++      SVCS PC++GQ K   +GE SCCW C  C +       
Sbjct: 496 ---------DDEVWSKKSNIIRSVCSEPCEKGQIKVIRKGEVSCCWTCTPCKENEYVFDE 546

Query: 158 WTGKP----HYPTREDNLLVCASF------------ISASYMIAFGYPIVLIVVCTVYAV 201
           +T K      +PT  D+L  C               I+A      G    L V  TV  +
Sbjct: 547 YTCKACQLGSWPT--DDLTGCDLIPVQYLRWGDPEPIAAVVFACLGLLATLFV--TVVFI 602

Query: 202 LTRNIPEAFNESKHI 216
           + R+ P   + S+ +
Sbjct: 603 IYRDTPVVKSSSREL 617
Receptor for glutamate. The activity of this receptor is mediated by a G-protein that activates a phosphatidylinositol-calcium second messenger system and generates a calcium-activated chloride current.
Homo sapiens (taxid: 9606)
>sp|P31423|GRM4_RAT Metabotropic glutamate receptor 4 OS=Rattus norvegicus GN=Grm4 PE=1 SV=1 Back     alignment and function description
>sp|P31424|GRM5_RAT Metabotropic glutamate receptor 5 OS=Rattus norvegicus GN=Grm5 PE=1 SV=2 Back     alignment and function description
>sp|Q68EF4|GRM4_MOUSE Metabotropic glutamate receptor 4 OS=Mus musculus GN=Grm4 PE=2 SV=2 Back     alignment and function description
>sp|Q3UVX5|GRM5_MOUSE Metabotropic glutamate receptor 5 OS=Mus musculus GN=Grm5 PE=2 SV=2 Back     alignment and function description
>sp|Q14833|GRM4_HUMAN Metabotropic glutamate receptor 4 OS=Homo sapiens GN=GRM4 PE=1 SV=1 Back     alignment and function description
>sp|Q1ZZH0|GRM4_MACFA Metabotropic glutamate receptor 4 OS=Macaca fascicularis GN=GRM4 PE=2 SV=1 Back     alignment and function description
>sp|O15303|GRM6_HUMAN Metabotropic glutamate receptor 6 OS=Homo sapiens GN=GRM6 PE=1 SV=2 Back     alignment and function description
>sp|Q14831|GRM7_HUMAN Metabotropic glutamate receptor 7 OS=Homo sapiens GN=GRM7 PE=1 SV=1 Back     alignment and function description
>sp|Q5RDQ8|GRM7_PONAB Metabotropic glutamate receptor 7 OS=Pongo abelii GN=GRM7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
383855430 2033 PREDICTED: uncharacterized protein LOC10 0.394 0.046 0.684 3e-41
307196831 805 Metabotropic glutamate receptor 7 [Harpe 0.414 0.124 0.655 1e-39
58585190 1040 metabotropic glutamate receptor B precur 0.394 0.091 0.675 1e-39
195430354 1024 GK21809 [Drosophila willistoni] gi|19415 0.448 0.105 0.578 3e-39
332028395 761 Metabotropic glutamate receptor [Acromyr 0.394 0.124 0.666 4e-39
195123374 1309 GI20896 [Drosophila mojavensis] gi|19391 0.394 0.072 0.657 5e-39
195381867 1346 GJ20628 [Drosophila virilis] gi|19414446 0.448 0.080 0.586 5e-39
322801761 482 hypothetical protein SINV_11755 [Solenop 0.460 0.230 0.587 5e-39
242008523 598 class C metabotropic glutamate-like G-pr 0.398 0.160 0.651 5e-39
307170603 901 Metabotropic glutamate receptor 7 [Campo 0.394 0.105 0.675 1e-38
>gi|383855430|ref|XP_003703215.1| PREDICTED: uncharacterized protein LOC100881789 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 87/111 (78%), Gaps = 16/111 (14%)

Query: 42   GLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEI 101
            GLSGDKFKFD NGDGPARYNIIHFK++ PG Y+W+RVG+Y+EGELRLN+S          
Sbjct: 1508 GLSGDKFKFDKNGDGPARYNIIHFKQIEPGKYKWIRVGKYLEGELRLNMS---------- 1557

Query: 102  TDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYH 152
                  EIQFK  HP+PPESVCSLPC+ GQAK+Y+EGE CCWHCFNCTQY 
Sbjct: 1558 ------EIQFKLGHPQPPESVCSLPCEVGQAKKYVEGERCCWHCFNCTQYQ 1602

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307196831|gb|EFN78267.1| Metabotropic glutamate receptor 7 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|58585190|ref|NP_001011623.1| metabotropic glutamate receptor B precursor [Apis mellifera] gi|41386671|dbj|BAD08344.1| metabotropic glutamate receptor [Apis mellifera] Back     alignment and taxonomy information
>gi|195430354|ref|XP_002063221.1| GK21809 [Drosophila willistoni] gi|194159306|gb|EDW74207.1| GK21809 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|332028395|gb|EGI68439.1| Metabotropic glutamate receptor [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195123374|ref|XP_002006182.1| GI20896 [Drosophila mojavensis] gi|193911250|gb|EDW10117.1| GI20896 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195381867|ref|XP_002049665.1| GJ20628 [Drosophila virilis] gi|194144462|gb|EDW60858.1| GJ20628 [Drosophila virilis] Back     alignment and taxonomy information
>gi|322801761|gb|EFZ22358.1| hypothetical protein SINV_11755 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|242008523|ref|XP_002425053.1| class C metabotropic glutamate-like G-protein coupled receptor GPRmgl2, putative [Pediculus humanus corporis] gi|212508702|gb|EEB12315.1| class C metabotropic glutamate-like G-protein coupled receptor GPRmgl2, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307170603|gb|EFN62787.1| Metabotropic glutamate receptor 7 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
FB|FBgn0050361 1415 mtt "mangetout" [Drosophila me 0.390 0.066 0.636 9.9e-58
UNIPROTKB|F1LRA6 910 Grm8 "Metabotropic glutamate r 0.402 0.106 0.339 1.1e-16
WB|WBGene00003232 999 mgl-1 [Caenorhabditis elegans 0.443 0.107 0.330 1.3e-16
ZFIN|ZDB-GENE-081104-501 908 si:dkey-52h10.3 "si:dkey-52h10 0.186 0.049 0.422 4.8e-16
ZFIN|ZDB-GENE-030131-5781 916 wu:fi18a01 "wu:fi18a01" [Danio 0.215 0.056 0.433 4.4e-15
RGD|2743 872 Grm2 "glutamate receptor, meta 0.406 0.112 0.342 1.7e-14
WB|WBGene00021152 1044 mgl-3 [Caenorhabditis elegans 0.219 0.050 0.518 7.2e-14
UNIPROTKB|E1BWK1 908 GRM8 "Uncharacterized protein" 0.186 0.049 0.468 1.9e-13
UNIPROTKB|F1LWV8 410 Grm8 "Metabotropic glutamate r 0.186 0.109 0.446 2e-13
UNIPROTKB|E1B965 996 GRM4 "Uncharacterized protein" 0.543 0.131 0.319 2.4e-13
FB|FBgn0050361 mtt "mangetout" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 382 (139.5 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
 Identities = 70/110 (63%), Positives = 81/110 (73%)

Query:    42 GLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEI 101
             GLSGD+F+FD NGDGPARYNIIHFK+   G Y WV+VGEY EGELRLN++          
Sbjct:   799 GLSGDEFRFDGNGDGPARYNIIHFKQSQAGQYHWVKVGEYTEGELRLNMT---------- 848

Query:   102 TDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQY 151
                   E++FK   P+PPESVCSLPC  GQAK+Y+EGESCCWHCFNCT Y
Sbjct:   849 ------EVKFKRLSPKPPESVCSLPCLVGQAKKYVEGESCCWHCFNCTTY 892
GO:0016021 "integral to membrane" evidence=ISS
GO:0016595 "glutamate binding" evidence=ISS;IDA
GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IDA
GO:0004930 "G-protein coupled receptor activity" evidence=IDA
GO:0008066 "glutamate receptor activity" evidence=IDA
GO:0030425 "dendrite" evidence=IDA
GO:0017085 "response to insecticide" evidence=IMP;IDA
GO:0008343 "adult feeding behavior" evidence=IMP
UNIPROTKB|F1LRA6 Grm8 "Metabotropic glutamate receptor 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00003232 mgl-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081104-501 si:dkey-52h10.3 "si:dkey-52h10.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5781 wu:fi18a01 "wu:fi18a01" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|2743 Grm2 "glutamate receptor, metabotropic 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00021152 mgl-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWK1 GRM8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1LWV8 Grm8 "Metabotropic glutamate receptor 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1B965 GRM4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
cd06362452 cd06362, PBP1_mGluR, Ligand binding domain of the 9e-12
pfam00003238 pfam00003, 7tm_3, 7 transmembrane sweet-taste rece 2e-10
pfam0756254 pfam07562, NCD3G, Nine Cysteines Domain of family 5e-09
cd06374472 cd06374, PBP1_mGluR_groupI, Ligand binding domain 2e-07
cd06375458 cd06375, PBP1_mGluR_groupII, Ligand binding domain 4e-04
cd06350348 cd06350, PBP1_GPCR_family_C_like, Ligand-binding d 0.002
>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information 
 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)

Query: 42  GLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNL 90
           GL+G   +FDANGDGP RY+I +++    G Y++V+VG + +GEL LNL
Sbjct: 406 GLAGGPVRFDANGDGPGRYDIFNYQRT-NGKYDYVKVGSW-KGELSLNL 452

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III. Length = 452
>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR Back     alignment and domain information
>gnl|CDD|219467 pfam07562, NCD3G, Nine Cysteines Domain of family 3 GPCR Back     alignment and domain information
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
KOG1056|consensus878 100.0
cd06364510 PBP1_CaSR Ligand-binding domain of the CaSR calciu 99.73
cd06365469 PBP1_Pheromone_receptor Ligand-binding domain of t 99.71
cd06376463 PBP1_mGluR_groupIII Ligand-binding domain of the g 99.58
cd06375458 PBP1_mGluR_groupII Ligand binding domain of the gr 99.57
cd06374472 PBP1_mGluR_groupI Ligand binding domain of the gro 99.47
cd06361403 PBP1_GPC6A_like Ligand-binding domain of the promi 99.27
cd06362452 PBP1_mGluR Ligand binding domain of the metabotrop 99.27
PF0756254 NCD3G: Nine Cysteines Domain of family 3 GPCR; Int 99.17
cd06379377 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ 99.04
PF00003238 7tm_3: 7 transmembrane sweet-taste receptor of 3 G 98.94
cd06363410 PBP1_Taste_receptor Ligand-binding domain of the T 98.89
cd06367362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 98.8
cd06372391 PBP1_GC_G_like Ligand-binding domain of membrane g 98.28
cd06378362 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ 97.88
cd06390364 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin 97.84
cd06392400 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v 97.84
cd06377382 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ 97.73
cd06370404 PBP1_Speract_GC_like Ligand-binding domain of memb 97.61
cd06391400 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v 97.59
cd06389370 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin 97.54
cd06373396 PBP1_NPR_like Ligand binding domain of natriuretic 97.45
cd06388371 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin 97.38
cd06385405 PBP1_NPR_A Ligand-binding domain of type A natriur 97.28
cd06386387 PBP1_NPR_C_like Ligand-binding domain of type C na 97.25
cd06387372 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin 97.25
cd06380382 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali 97.17
KOG4440|consensus 993 96.93
PF01094348 ANF_receptor: Receptor family ligand binding regio 96.92
cd06352389 PBP1_NPR_GC_like Ligand-binding domain of membrane 96.82
cd06393384 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol 96.78
cd06384399 PBP1_NPR_B Ligand-binding domain of type B natriur 96.56
cd06369380 PBP1_GC_C_enterotoxin_receptor Ligand-binding doma 96.28
cd06371382 PBP1_sensory_GC_DEF_like Ligand-binding domain of 94.18
cd06381363 PBP1_iGluR_delta_like N-terminal leucine/isoleucin 92.3
KOG1055|consensus 865 91.49
cd06350348 PBP1_GPCR_family_C_like Ligand-binding domain of m 89.77
cd06383368 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine 89.39
>KOG1056|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.4e-44  Score=356.47  Aligned_cols=198  Identities=37%  Similarity=0.705  Sum_probs=173.2

Q ss_pred             ehHHHHHhhhhhhhC--------CCcCCCC-CceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeE
Q psy6049           5 ITYFVMVTYLPNKLG--------IHVDFNT-PRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEW   75 (241)
Q Consensus         5 ~~~~~ma~aLh~~l~--------~~~~~~~-~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~   75 (241)
                      -|||.||||||+|.+        .|++|.. ++|+|.+|+++|+|.+..|+ +.||+|||++++|||+||+...+. +.+
T Consensus       386 ~aVya~A~aLh~m~~~lc~~~~~~C~~m~~~dg~~L~~~l~~vnF~~~~~~-v~Fd~~gD~~~~y~I~~~~~~~~~-~~y  463 (878)
T KOG1056|consen  386 DAVYAMAHALHNMHQDLCPGTSGLCSAMKAIDGSLLLKYLLNVNFTGPAGS-VRFDENGDGPGRYDILNYQLTNGS-YTY  463 (878)
T ss_pred             HHHHHHHHHHHHHHHhhcCCccccCcCccccCHHHHHhhhheeEEecCCCc-eeecCCCCCccceeEEEeeccCCC-ccc
Confidence            389999999999974        3455554 79999999999999999887 999999999999999999876544 889


Q ss_pred             EEEEEEECceEEEecCCCCCCcceeecCCCCceeecCCCCCCCCcccccCcCCCCceeeeeCCCCeeEEccccCCCC---
Q psy6049          76 VRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYH---  152 (241)
Q Consensus        76 v~VG~~~~~~l~in~~~~~~~~~~~~~~~~~~~i~W~~~~~~iP~SvCS~~C~pG~rK~~~~g~~CCw~Cv~C~~ge---  152 (241)
                      ..||+|++ .+.+|.+                .+.|..+..++|.|+||++|.||++|..+++.+|||.|.+|+++|   
T Consensus       464 ~~vg~w~~-~~~l~i~----------------~~~w~~~~~~v~~S~CS~pC~~g~~k~~~~~~~ccw~c~~c~~~eY~~  526 (878)
T KOG1056|consen  464 KEVGYWSE-GLSLNIE----------------DLDWTTKPSGVPKSVCSEPCLPGQRKKVTKGVTCCWHCTPCMSYEYVN  526 (878)
T ss_pred             eeeeeecc-cccccce----------------eeeeccCCCCCccccccCcCCcchhcccccCceeEEEcccCCCcceec
Confidence            99999986 3447777                899998888899999999999999999888778999999999988   


Q ss_pred             ------------cc------------------------------------------------------------------
Q psy6049         153 ------------EP------------------------------------------------------------------  154 (241)
Q Consensus       153 ------------~P------------------------------------------------------------------  154 (241)
                                  ||                                                                  
T Consensus       527 d~~tc~~C~~~~wp~~~~tgc~~~~~~yl~W~~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~g  606 (878)
T KOG1056|consen  527 DEFTCSDCQLGQWPNASLTGCFDIPVSYLRWRSPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLG  606 (878)
T ss_pred             CcceeccCCcCcCCCcccCCccccchhheeccccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHH
Confidence                        11                                                                  


Q ss_pred             -------------------------------------cccccCC------------------------------------
Q psy6049         155 -------------------------------------LLTWTGK------------------------------------  161 (241)
Q Consensus       155 -------------------------------------il~KT~~------------------------------------  161 (241)
                                                           |++||||                                    
T Consensus       607 i~l~y~~tf~~i~eP~~~~C~lrr~~~gl~f~i~ysalltKtnrI~rif~~~~k~~~~~~~is~~~q~~i~~~l~~iQlv  686 (878)
T KOG1056|consen  607 IFLCYASTFFFIAEPTDISCRLRRTFLGLGFTICYSALLTKTNRIARIFEFSKKSIQRPRFISPWSQVLITFILIGIQLV  686 (878)
T ss_pred             HHHHHhhhheeEecCCCceeeEeeeecchhHHHHHHHHHHHHHHHHHHHhcccccccccceeccchHHHHHHHHhhheeE
Confidence                                                 9999988                                    


Q ss_pred             ---------C-----CCCC-CCceEEEeccCChhhhHHHHHHHHHHHHHHhhheeeccCCCCCCCcceeEEEEeee
Q psy6049         162 ---------P-----HYPT-REDNLLVCASFISASYMIAFGYPIVLIVVCTVYAVLTRNIPEAFNESKHIGEFSTV  222 (241)
Q Consensus       162 ---------~-----~~~~-~~~iil~C~~~s~~~~~~~l~y~~lL~l~c~~~Af~~R~lP~nFNEAK~I~Fs~~~  222 (241)
                               +     .|+. ++.+++.|++ +..+|++.++|+++|+++||+||||+|++||||||||||+|+|+.
T Consensus       687 i~~~Wlv~~~p~~~~~~~~~~~~~~L~C~~-~~~~f~~~l~Y~~lL~~~Ct~yA~ktR~~peNFNEaK~I~Ftmy~  761 (878)
T KOG1056|consen  687 ICVSWLVVEPPGSVRTYVSRREVVILKCTE-VDLGFLLSLGYSGLLILSCTVYAFKTRNLPENFNEAKFIGFTMYT  761 (878)
T ss_pred             EEEEEEeecCCccccccccccceEEEEecC-cchHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhhhhHHH
Confidence                     1     2333 3448999997 899999999999999999999999999999999999999999975

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G Back     alignment and domain information
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family Back     alignment and domain information
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor Back     alignment and domain information
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family Back     alignment and domain information
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor Back     alignment and domain information
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor Back     alignment and domain information
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor Back     alignment and domain information
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>KOG4440|consensus Back     alignment and domain information
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] Back     alignment and domain information
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C Back     alignment and domain information
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 Back     alignment and domain information
>KOG1055|consensus Back     alignment and domain information
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3lmk_A492 Ligand Binding Domain Of Metabotropoc Glutamate Rec 7e-09
2e4u_A555 Crystal Structure Of The Extracellular Region Of Th 1e-06
1ewk_A490 Crystal Structure Of Metabotropic Glutamate Recepto 1e-04
3ks9_A496 Metabotropic Glutamate Receptor Mglur1 Complexed Wi 1e-04
3sm9_A479 Crystal Structure Of Metabotropic Glutamate Recepto 9e-04
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor Mglur5 Complexed With Glutamate Length = 492 Back     alignment and structure 
Iteration: 1

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 39  NIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
           N  G+SGD   FD NGD P RY I++FKEM    ++++ VG +  GEL+++
Sbjct: 432 NFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDNGELKMD 482
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group Ii Metabotropic Glutamate Receptor Complexed With L-glutamate Length = 555 Back     alignment and structure
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor Subtype 1 Complexed With Glutamate Length = 490 Back     alignment and structure
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With Ly341495 Antagonist Length = 496 Back     alignment and structure
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3 Precursor In Presence Of Ly341495 Antagonist Length = 479 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 2e-19
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 9e-11
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 9e-10
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 9e-09
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 8e-08
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 3e-06
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 6e-05
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 Back     alignment and structure
 Score = 85.6 bits (212), Expect = 2e-19
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 20/109 (18%)

Query: 44  SGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITD 103
           +    KFD  GDG  RYN+ + +  + G Y +++VG + E  L L++             
Sbjct: 426 ADSIVKFDTFGDGMGRYNVFNLQ-QTGGKYSYLKVGHWAE-TLSLDVD------------ 471

Query: 104 GMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNCTQYH 152
                I +       P S CS PC   + K    G+ CCW C  C  Y 
Sbjct: 472 ----SIHWSRNSV--PTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYE 514
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 Back     alignment and structure
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 99.96
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 99.76
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 99.63
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 99.6
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 99.06
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 99.01
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 98.94
4gpa_A389 Glutamate receptor 4; PBP fold, ligand-gated ION c 98.86
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 98.59
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 98.44
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 97.93
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 97.8
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 97.69
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 97.64
3kg2_A 823 Glutamate receptor 2; ION channel, membrane protei 97.51
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 96.06
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 95.97
1usg_A346 Leucine-specific binding protein; leucine-binding 95.52
3td9_A366 Branched chain amino acid ABC transporter, peripl 94.7
3ipc_A356 ABC transporter, substrate binding protein (amino; 94.04
4evq_A375 Putative ABC transporter subunit, substrate-bindi 93.9
3hut_A358 Putative branched-chain amino acid ABC transporter 91.96
3n0w_A379 ABC branched chain amino acid family transporter, 90.53
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 89.59
3h5l_A419 Putative branched-chain amino acid ABC transporter 89.43
3i45_A387 Twin-arginine translocation pathway signal protei; 84.98
1pea_A385 Amidase operon; gene regulator, receptor, binding 80.93
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Back     alignment and structure
Probab=99.96  E-value=3.5e-29  Score=239.96  Aligned_cols=128  Identities=27%  Similarity=0.529  Sum_probs=112.9

Q ss_pred             ehHHHHHhhhhhhhCCC---------cCCCCCceeccc-ccccceec------CCCCCeEEeccCCCCcceeeEEEeEEc
Q psy6049           5 ITYFVMVTYLPNKLGIH---------VDFNTPRVKFPP-RADNDNIA------GLSGDKFKFDANGDGPARYNIIHFKEM   68 (241)
Q Consensus         5 ~~~~~ma~aLh~~l~~~---------~~~~~~~~~l~~-yL~~v~F~------~~~g~~v~Fd~nGd~~~~YdI~n~~~~   68 (241)
                      -|||+||||||+++.+.         .....++|+|++ +|++++|.      +.+|+++.||++||..+.|||+||+. 
T Consensus       371 dAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~~y~I~~~~~-  449 (555)
T 2e4u_A          371 NAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNVFNLQQ-  449 (555)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCCCEEEEEEEC-
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCccceEEEEEEEe-
Confidence            37999999999997521         111246799999 99999999      99999999999999999999999986 


Q ss_pred             CCCceeEEEEEEEECceEEEecCCCCCCcceeecCCCCceeecCCCCCCCCcccccCcCCCCceeeeeCCCCeeEEcccc
Q psy6049          69 SPGSYEWVRVGEYVEGELRLNLSGKFGPYFVEITDGMPQEIQFKAEHPRPPESVCSLPCDRGQAKQYLEGESCCWHCFNC  148 (241)
Q Consensus        69 ~~g~~~~v~VG~~~~~~l~in~~~~~~~~~~~~~~~~~~~i~W~~~~~~iP~SvCS~~C~pG~rK~~~~g~~CCw~Cv~C  148 (241)
                      .+|...+++||+|+. .|.|+.+                .|.|..  +++|.|+||++|+||+||..++|++|||+|++|
T Consensus       450 ~~g~~~~~~VG~~~~-~l~i~~~----------------~I~W~~--~~~P~S~CS~~C~pG~rk~~~~g~~CC~~C~~C  510 (555)
T 2e4u_A          450 TGGKYSYLKVGHWAE-TLSLDVD----------------SIHWSR--NSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPC  510 (555)
T ss_dssp             TTSSCEEEEEEEESS-SEECCGG----------------GCCCTT--SSCCCCCSSCCCCTTTEEEECCSSSSCCEEEEC
T ss_pred             cCCcEEEEEEEEecc-eEEEecc----------------ccccCC--CCCcceeeCCCCCCCeeeeecCCCeeEEECccC
Confidence            677778999999985 7888887                899976  589999999999999999999999999999999


Q ss_pred             CCCC
Q psy6049         149 TQYH  152 (241)
Q Consensus       149 ~~ge  152 (241)
                      |+||
T Consensus       511 ~~~~  514 (555)
T 2e4u_A          511 EPYE  514 (555)
T ss_dssp             CTTE
T ss_pred             CCce
Confidence            9999
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Back     alignment and structure
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} Back     alignment and structure
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Back     alignment and structure
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d1ewka_477 c.93.1.1 (A:) Metabotropic glutamate receptor subt 7e-12
d1jdpa_401 c.93.1.1 (A:) Hormone binding domain of the atrial 3e-05
d1dp4a_425 c.93.1.1 (A:) Hormone binding domain of the atrial 0.002
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.3 bits (150), Expect = 7e-12
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 37  NDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWVRVGEYVEGELRLN 89
             +  G+SG++  FD  GD P RY+I++ +      Y++V VG + EG L ++
Sbjct: 421 KSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNID 473
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d1ewka_477 Metabotropic glutamate receptor subtype 1 {Rat (Ra 99.5
d1dp4a_425 Hormone binding domain of the atrial natriuretic p 98.83
d1jdpa_401 Hormone binding domain of the atrial natriuretic p 98.23
d1usga_346 Leucine-binding protein {Escherichia coli [TaxId: 93.77
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.2e-14  Score=133.87  Aligned_cols=86  Identities=26%  Similarity=0.440  Sum_probs=75.2

Q ss_pred             hHHHHHhhhhhhhCCC--------cCCC-CCceecccccccceecCCCCCeEEeccCCCCcceeeEEEeEEcCCCceeEE
Q psy6049           6 TYFVMVTYLPNKLGIH--------VDFN-TPRVKFPPRADNDNIAGLSGDKFKFDANGDGPARYNIIHFKEMSPGSYEWV   76 (241)
Q Consensus         6 ~~~~ma~aLh~~l~~~--------~~~~-~~~~~l~~yL~~v~F~~~~g~~v~Fd~nGd~~~~YdI~n~~~~~~g~~~~v   76 (241)
                      |||++|||||+++.+.        ..+. ..+|+|+++|++++|.|.+|+.|.||++||..+.|||+|||...++...++
T Consensus       381 AV~a~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~~~~y~I~n~q~~~~~~~~~~  460 (477)
T d1ewka_         381 AIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYV  460 (477)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCCCEEEEEEEECSSSCEEEE
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCcccCCCcCCHHHHHHHHhcCeeECCCCCEEEECCCCCccceEEEEEEEECCCCcEEEE
Confidence            7899999999987531        1111 257899999999999999999999999999999999999998888889999


Q ss_pred             EEEEEECceEEEecC
Q psy6049          77 RVGEYVEGELRLNLS   91 (241)
Q Consensus        77 ~VG~~~~~~l~in~~   91 (241)
                      +||.|++..|.||++
T Consensus       461 ~VG~w~~~~l~i~~~  475 (477)
T d1ewka_         461 HVGTWHEGVLNIDDY  475 (477)
T ss_dssp             EEEEEETTEEEECTT
T ss_pred             EEEEEeCCCcccccc
Confidence            999999888889876
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure