Psyllid ID: psy6084

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MSGDQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMRSGGTGAMRRSTSR
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEcccccEEEEEEEEEcccccccEEEEEEcccccccccEEccEEEEEcccccEEEEEcccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEccEEEEEcccccEEEEEEEccccccccEEEEEEccccccEccEEccEEccccccccEEEEcccEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
msgdqsfddvtlpewvclgesvlirpynssgviayigptefaagtwvgveldaptgkndgtvqgtryfesrpkhgifvrADKLIQDRrgramrsggtgamrrstsr
Flexible Loop (DISEMBL)
msgdqsfddvtLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGtryfesrpkhgifvradkliqdrrgramrsggtgamrrstsr
Low Complexity Region (SEG)
MSGDQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMRSGGTGAMRRSTSR
Disordered region (IsUnstruct)
********DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL***********************
Disordered Region (DISOPRED)
****************CLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR***************************
Disordered Region (DISEMBL)
********DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR*******************
Disordered Region (DISPRO)
*************EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGDQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMRSGGTGAMRRSTSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9NQT8	1826	Kinesin-like protein KIF1	yes	N/A	0.867	0.050	0.418	2e-16
Q9VJE5	1690	Restin homolog OS=Drosoph	no	N/A	0.707	0.044	0.48	3e-15
P30622	1438	CAP-Gly domain-containing	no	N/A	0.632	0.046	0.485	5e-14
Q922J3	1391	CAP-Gly domain-containing	no	N/A	0.632	0.048	0.485	6e-14
O55156	1046	CAP-Gly domain-containing	no	N/A	0.632	0.064	0.529	8e-14
Q9Z0H8	1047	CAP-Gly domain-containing	no	N/A	0.632	0.063	0.529	8e-14
Q9UDT6	1046	CAP-Gly domain-containing	no	N/A	0.632	0.064	0.529	8e-14
O42184	1433	CAP-Gly domain-containing	no	N/A	0.632	0.046	0.470	1e-13
Q6PCJ1	1232	Dynactin subunit 1 OS=Xen	N/A	N/A	0.5	0.043	0.603	4e-13
Q8N3C7	705	CAP-Gly domain-containing	no	N/A	0.594	0.089	0.461	4e-13

>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 6/98 (6%)

Query: 12   LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
            +PEW+  GE V +  + + GV+ Y+GP +F  GTWVGVELD P+GKNDG++ G +YF   
Sbjct: 1697 VPEWLREGEFVTVGAHKT-GVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 1755

Query: 72   PKHGIFVRADKLIQ-----DRRGRAMRSGGTGAMRRST 104
            P +G+ VR  ++ +      RR   +R G   A R +T
Sbjct: 1756 PGYGLLVRPSRVRRATGPVRRRSTGLRLGAPEARRSAT 1793

Involved in reorganization of the cortical cytoskeleton. Regulates axon formation by promoting the formation of extra axons. May be functionally important for the intracellular trafficking of MAGUKs and associated protein complexes.
Homo sapiens (taxid: 9606)

>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 47/75 (62%)

Query: 31  GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR 90
           G++ Y+G T+FA G W GVELD P+GKNDGTV   RYFE +PK+G+FV   K+      +
Sbjct: 254 GILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYGVFVPIAKVSLSPSSK 313

Query: 91  AMRSGGTGAMRRSTS 105
             R   TG+    TS
Sbjct: 314 KTRLSRTGSRESLTS 328

Together CLIP-190 and jar may coordinate the interaction between the actin and microtubule cytoskeleton. May link endocytic vesicles to microtubules. May play a role in formation of furrows during cellularization.

Drosophila melanogaster (taxid: 7227)

>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 214 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 272

Query: 78  VRADKLIQ 85
               K+ +
Sbjct: 273 APVHKVTK 280

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Homo sapiens (taxid: 9606)

>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 213 VGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 271

Query: 78  VRADKLIQ 85
               K+ +
Sbjct: 272 APVHKVTK 279

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Mus musculus (taxid: 10090)

>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           LG+ VL+     +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+  PK G+F
Sbjct: 222 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 280

Query: 78  VRADKLIQ 85
               K+I+
Sbjct: 281 APIHKVIR 288

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           LG+ VL+     +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+  PK G+F
Sbjct: 222 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 280

Query: 78  VRADKLIQ 85
               K+I+
Sbjct: 281 APIHKVIR 288

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Mus musculus (taxid: 10090)

>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           LG+ VL+     +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+  PK G+F
Sbjct: 221 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 279

Query: 78  VRADKLIQ 85
               K+I+
Sbjct: 280 APIHKVIR 287

Seems to link microtubules to dendritic lamellar body (DLB), a membranous organelle predominantly present in bulbous dendritic appendages of neurons linked by dendrodendritic gap junctions. May operates in the control of brain-specific organelle translocations.

Homo sapiens (taxid: 9606)

>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +P++G+F
Sbjct: 217 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLF 275

Query: 78  VRADKLIQ 85
               K+ +
Sbjct: 276 APVHKVTK 283

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Gallus gallus (taxid: 9031)

>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 36/53 (67%)

Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL 83
          G +AY+G T FA G WVGV LD   GKNDGTVQG RYF     HGIFVR  ++
Sbjct: 25 GTVAYVGATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEENHGIFVRQSQI 77

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Xenopus laevis (taxid: 8355)

>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%)

Query: 19  GESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFV 78
           G  VL+   N  G + Y+GPT+FA+G W+G+EL +  GKNDG+V   RYF  +P HG+ V
Sbjct: 626 GSQVLLTSSNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLV 685

Query: 79  RADKL 83
           R  ++
Sbjct: 686 RPSRV 690

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
189233780	1837	PREDICTED: similar to Kinesin-73 CG8183-	0.943	0.054	0.660	1e-36
270015064	1824	hypothetical protein TcasGA2_TC014226 [T	0.943	0.054	0.660	2e-36
242020853	1814	conserved hypothetical protein [Pediculu	0.924	0.054	0.699	3e-36
383858251	2117	PREDICTED: kinesin-like protein KIF13B-l	0.971	0.048	0.657	9e-35
328780639	1929	PREDICTED: kinesin 3A [Apis mellifera]	0.971	0.053	0.654	1e-34
350416890	1909	PREDICTED: kinesin-like protein KIF13B-l	0.971	0.053	0.663	3e-34
340719864	1905	PREDICTED: kinesin-like protein KIF13B-l	0.971	0.054	0.663	3e-34
380022445	1876	PREDICTED: kinesin-like protein KIF13B,	0.971	0.054	0.644	6e-34
307172257	1795	Kinesin-like protein KIF13A [Camponotus	0.924	0.054	0.650	7e-34
195455370	1914	GK23204 [Drosophila willistoni] gi|19417	0.811	0.044	0.720	1e-33

>gi|189233780|ref|XP_001814557.1| PREDICTED: similar to Kinesin-73 CG8183-PB [Tribolium castaneum]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/115 (66%), Positives = 85/115 (73%), Gaps = 15/115 (13%)

Query: 7    FDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTR 66
              DV +PEWV LGESVLIRPYNSSGV+AYIG TEFA+GTW+GVELDAP GKNDG+VQG R
Sbjct: 1707 LSDVPVPEWVILGESVLIRPYNSSGVVAYIGGTEFASGTWIGVELDAPKGKNDGSVQGVR 1766

Query: 67   YFESRPKHGIFVRADKLIQDRRGRAMRS---------------GGTGAMRRSTSR 106
            YF  RPK+G+FVRADKLI DRRGRAMR+                G G + RS SR
Sbjct: 1767 YFSCRPKYGMFVRADKLILDRRGRAMRAYKADSLANNNKCASGKGDGGLPRSRSR 1821

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015064|gb|EFA11512.1| hypothetical protein TcasGA2_TC014226 [Tribolium castaneum]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/115 (66%), Positives = 85/115 (73%), Gaps = 15/115 (13%)

Query: 7    FDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTR 66
              DV +PEWV LGESVLIRPYNSSGV+AYIG TEFA+GTW+GVELDAP GKNDG+VQG R
Sbjct: 1694 LSDVPVPEWVILGESVLIRPYNSSGVVAYIGGTEFASGTWIGVELDAPKGKNDGSVQGVR 1753

Query: 67   YFESRPKHGIFVRADKLIQDRRGRAMRS---------------GGTGAMRRSTSR 106
            YF  RPK+G+FVRADKLI DRRGRAMR+                G G + RS SR
Sbjct: 1754 YFSCRPKYGMFVRADKLILDRRGRAMRAYKADSLANNNKCASGKGDGGLPRSRSR 1808

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020853|ref|XP_002430865.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516076|gb|EEB18127.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/103 (69%), Positives = 83/103 (80%), Gaps = 5/103 (4%)

Query: 9    DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYF 68
            D  +P+WV +GESVLIRPYN+SGV+AY+G T+FA GTWVGVELDAPTGKNDG +QG RYF
Sbjct: 1708 DANVPDWVVVGESVLIRPYNTSGVVAYLGSTDFAPGTWVGVELDAPTGKNDGVIQGVRYF 1767

Query: 69   ESRPKHGIFVRADKLIQDRRGRAMRS-----GGTGAMRRSTSR 106
              +PKHGIFVRADKLI D+RGRAMR          +MRRSTSR
Sbjct: 1768 TCKPKHGIFVRADKLILDKRGRAMRQYKNMDQTEHSMRRSTSR 1810

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858251|ref|XP_003704615.1| PREDICTED: kinesin-like protein KIF13B-like [Megachile rotundata]

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 71/108 (65%), Positives = 84/108 (77%), Gaps = 5/108 (4%)

Query: 4    DQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQ 63
            D S  +  LP+WV +GESVL+RPY+ SGVIAY+GPTEFA+GTW+GVELDAPTGKNDG V 
Sbjct: 1981 DLSRVETPLPDWVIVGESVLVRPYSYSGVIAYVGPTEFASGTWIGVELDAPTGKNDGAVN 2040

Query: 64   GTRYFESRPKHGIFVRADKLIQDRRGRAMRS-----GGTGAMRRSTSR 106
            G RYF  RPK GIFV+ DKLIQD+RGRA+R+       +  MRRS SR
Sbjct: 2041 GHRYFTCRPKCGIFVKVDKLIQDKRGRALRNYTFTLPQSAPMRRSVSR 2088

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780639|ref|XP_003249835.1| PREDICTED: kinesin 3A [Apis mellifera]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 4/107 (3%)

Query: 4    DQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQ 63
            D S  +  LP+WV +GESVL+RPY+ SGVIAY+GPTEFA+GTW+G+ELDAPTGKNDG V 
Sbjct: 1794 DLSRVETPLPDWVVIGESVLVRPYSYSGVIAYVGPTEFASGTWIGIELDAPTGKNDGAVN 1853

Query: 64   GTRYFESRPKHGIFVRADKLIQDRRGRAMRSGGT----GAMRRSTSR 106
            G RYF  RPK GIFV+ DKLIQD+RGRA+R+  +      MRRS SR
Sbjct: 1854 GHRYFTCRPKCGIFVKVDKLIQDKRGRALRNYTSTPQPAPMRRSVSR 1900

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416890|ref|XP_003491154.1| PREDICTED: kinesin-like protein KIF13B-like [Bombus impatiens]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 83/107 (77%), Gaps = 4/107 (3%)

Query: 4    DQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQ 63
            D S  +  LP+WV +GESVL+RPY+ SGVIAY+GPTEFA GTW+GVELDAPTGKNDG V 
Sbjct: 1774 DLSRVETPLPDWVIVGESVLVRPYSYSGVIAYVGPTEFATGTWIGVELDAPTGKNDGAVN 1833

Query: 64   GTRYFESRPKHGIFVRADKLIQDRRGRAMRSGGT----GAMRRSTSR 106
            G RYF  RPK GIFV+ DKLIQD+RGRA+R+  +      MRRS SR
Sbjct: 1834 GHRYFTCRPKCGIFVKVDKLIQDKRGRALRNYVSVPQPAPMRRSVSR 1880

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719864|ref|XP_003398365.1| PREDICTED: kinesin-like protein KIF13B-like [Bombus terrestris]

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 83/107 (77%), Gaps = 4/107 (3%)

Query: 4    DQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQ 63
            D S  +  LP+WV +GESVL+RPY+ SGVIAY+GPTEFA+GTW+GVELDAPTGKNDG V 
Sbjct: 1770 DLSRVETPLPDWVIVGESVLVRPYSYSGVIAYVGPTEFASGTWIGVELDAPTGKNDGAVN 1829

Query: 64   GTRYFESRPKHGIFVRADKLIQDRRGRAMR----SGGTGAMRRSTSR 106
            G RYF  RPK GIFV+ DKLIQD+RGRA+R    +     MRRS SR
Sbjct: 1830 GHRYFTCRPKCGIFVKVDKLIQDKRGRALRNYVSAPQPAPMRRSVSR 1876

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022445|ref|XP_003695056.1| PREDICTED: kinesin-like protein KIF13B, partial [Apis florea]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/107 (64%), Positives = 83/107 (77%), Gaps = 4/107 (3%)

Query: 4    DQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQ 63
            D S  +  LP+WV +GESVL+RPY+ SGVI Y+GPTEFA+GTW+G+ELDAPTGKNDG V 
Sbjct: 1741 DLSRVETPLPDWVVVGESVLVRPYSYSGVIVYVGPTEFASGTWIGIELDAPTGKNDGAVN 1800

Query: 64   GTRYFESRPKHGIFVRADKLIQDRRGRAMRSGGT----GAMRRSTSR 106
            G RYF  RPK GIFV+ DKLIQD+RGRA+R+  +      MRRS SR
Sbjct: 1801 GHRYFTCRPKCGIFVKVDKLIQDKRGRALRNYTSTPQPAPMRRSVSR 1847

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172257|gb|EFN63762.1| Kinesin-like protein KIF13A [Camponotus floridanus]

 Score =  147 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/106 (65%), Positives = 81/106 (76%), Gaps = 8/106 (7%)

Query: 9    DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYF 68
            +  LP+WV +GESVL+RPY+ SGVIAY+GPTEFA+G W+GVELDAPTGKNDG V G RYF
Sbjct: 1660 ETLLPDWVVVGESVLVRPYSYSGVIAYVGPTEFASGNWIGVELDAPTGKNDGAVNGHRYF 1719

Query: 69   ESRPKHGIFVRADKLIQDRRGRAMRS--------GGTGAMRRSTSR 106
              RPK GIFV+ DKLIQDRRGRA+RS          +  MRRS S+
Sbjct: 1720 TCRPKCGIFVKVDKLIQDRRGRALRSYTKQEPAPAPSALMRRSVSK 1765

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195455370|ref|XP_002074692.1| GK23204 [Drosophila willistoni] gi|194170777|gb|EDW85678.1| GK23204 [Drosophila willistoni]

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/86 (72%), Positives = 76/86 (88%)

Query: 9    DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYF 68
            D+TLPEW+ +GESVLIRPYN+SGVI++IG T F  G W+GVELD PTGKNDGTVQG +YF
Sbjct: 1795 DLTLPEWIVVGESVLIRPYNTSGVISFIGTTHFQPGAWIGVELDTPTGKNDGTVQGIQYF 1854

Query: 69   ESRPKHGIFVRADKLIQDRRGRAMRS 94
            + +PKHGIFVRADKL+ D+RG+AMR+
Sbjct: 1855 QCKPKHGIFVRADKLLLDKRGKAMRA 1880

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0019968	1921	Khc-73 "Kinesin-73" [Drosophil	0.971	0.053	0.576	3.9e-29
UNIPROTKB|F1LRB4	1753	Kif13b "Protein Kif13b" [Rattu	0.839	0.050	0.459	7.5e-17
RGD|1303307	1767	Kif13b "kinesin family member	0.839	0.050	0.459	7.6e-17
UNIPROTKB|D4A996	1827	Kif13b "Protein Kif13b" [Rattu	0.839	0.048	0.459	7.9e-17
UNIPROTKB|F1RJP9	1851	KIF13B "Uncharacterized protei	0.877	0.050	0.424	7.3e-16
UNIPROTKB|E1BGB0	1878	KIF13B "Uncharacterized protei	0.773	0.043	0.467	7.4e-16
UNIPROTKB|F1PIS8	1777	KIF13B "Uncharacterized protei	0.877	0.052	0.424	8.8e-16
UNIPROTKB|F1PIS5	1984	KIF13B "Uncharacterized protei	0.877	0.046	0.424	1e-15
UNIPROTKB|F8VPJ2	1826	KIF13B "Kinesin-like protein K	0.943	0.054	0.407	1.5e-15
UNIPROTKB|Q9NQT8	1826	KIF13B "Kinesin-like protein K	0.943	0.054	0.407	1.5e-15

FB|FBgn0019968 Khc-73 "Kinesin-73" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 3.9e-29, P = 3.9e-29
 Identities = 60/104 (57%), Positives = 82/104 (78%)

Query:     4 DQSFD-DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTV 62
             ++S D ++ LPEW+ +GESVLIRPYN+SGVI ++G TEF  G W+GVELD PTGKNDG+V
Sbjct:  1792 EESKDVELVLPEWIVVGESVLIRPYNTSGVIRFVGTTEFQPGAWIGVELDTPTGKNDGSV 1851

Query:    63 QGTRYFESRPKHGIFVRADKLIQDRRGRAMRSGGTGAMRRSTSR 106
             +G +YF+ +PKHG+FVR+DKL+ D+RG+AMR+        S S+
Sbjct:  1852 KGVQYFQCKPKHGMFVRSDKLMLDKRGKAMRAYKAAEKSNSISK 1895

GO:0003777 "microtubule motor activity" evidence=ISS;IDA

GO:0008017 "microtubule binding" evidence=ISS

GO:0005871 "kinesin complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0000235 "astral microtubule" evidence=IDA

GO:0051294 "establishment of spindle orientation" evidence=IMP

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0035371 "microtubule plus end" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

UNIPROTKB|F1LRB4 Kif13b "Protein Kif13b" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 45/98 (45%), Positives = 60/98 (61%)

Query:     6 SFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGT 65
             S D   +PEW+  GE V++   N +G++ YIGPT+F  GTW+GVELD P GKNDG++ G 
Sbjct:  1617 SEDASEVPEWLREGEYVVVGT-NKTGIVRYIGPTDFQEGTWIGVELDLPAGKNDGSIGGK 1675

Query:    66 RYFESRPKHGIFVRADKLIQDRRGRAMRSGGTGAMRRS 103
             +YF   P +G+ VR         GR  R+ GTG  R S
Sbjct:  1676 QYFRCNPGYGLLVRP--------GRVRRAAGTGRRRSS 1705

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

RGD|1303307 Kif13b "kinesin family member 13B" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 45/98 (45%), Positives = 60/98 (61%)

Query:     6 SFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGT 65
             S D   +PEW+  GE V++   N +G++ YIGPT+F  GTW+GVELD P GKNDG++ G 
Sbjct:  1631 SEDASEVPEWLREGEYVVVGT-NKTGIVRYIGPTDFQEGTWIGVELDLPAGKNDGSIGGK 1689

Query:    66 RYFESRPKHGIFVRADKLIQDRRGRAMRSGGTGAMRRS 103
             +YF   P +G+ VR         GR  R+ GTG  R S
Sbjct:  1690 QYFRCNPGYGLLVRP--------GRVRRAAGTGRRRSS 1719

GO:0005737 "cytoplasm" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0050770 "regulation of axonogenesis" evidence=ISO

GO:0071889 "14-3-3 protein binding" evidence=ISO

UNIPROTKB|D4A996 Kif13b "Protein Kif13b" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 7.9e-17, P = 7.9e-17
 Identities = 45/98 (45%), Positives = 60/98 (61%)

Query:     6 SFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGT 65
             S D   +PEW+  GE V++   N +G++ YIGPT+F  GTW+GVELD P GKNDG++ G 
Sbjct:  1691 SEDASEVPEWLREGEYVVVGT-NKTGIVRYIGPTDFQEGTWIGVELDLPAGKNDGSIGGK 1749

Query:    66 RYFESRPKHGIFVRADKLIQDRRGRAMRSGGTGAMRRS 103
             +YF   P +G+ VR         GR  R+ GTG  R S
Sbjct:  1750 QYFRCNPGYGLLVRP--------GRVRRAAGTGRRRSS 1779

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|F1RJP9 KIF13B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 7.3e-16, P = 7.3e-16
 Identities = 42/99 (42%), Positives = 62/99 (62%)

Query:    12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
             +PEW+  GE V +   N +G++ Y+GPT+F  GTWVGVELD P+GKNDG++ G +YF+  
Sbjct:  1714 VPEWLKEGEYVTVGT-NKTGIVRYVGPTDFQEGTWVGVELDLPSGKNDGSIGGKQYFKCN 1772

Query:    72 PKHGIFVRADKLIQD-----RRGRAMRSGGTGAMRRSTS 105
             P +G+ VR  ++ +      RR   +R  G    RRS +
Sbjct:  1773 PGYGLLVRPGRVRRAAGPGRRRSAGLRLQGAPEPRRSAT 1811

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E1BGB0 KIF13B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 7.4e-16, P = 7.4e-16
 Identities = 43/92 (46%), Positives = 59/92 (64%)

Query:    12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
             +PEW+  GE V +   N +G++ Y+GPT+F  GTWVGVELD P+GKNDG++ G +YF+  
Sbjct:  1741 VPEWLKEGEYVTVGT-NKTGIVRYVGPTDFQEGTWVGVELDLPSGKNDGSIGGKQYFKCN 1799

Query:    72 PKHGIFVRADKLIQDRRGRAMRSGGTGAMRRS 103
             P +G+ VR         GR  R+ G G  RRS
Sbjct:  1800 PGYGLLVRP--------GRVRRAAGAGR-RRS 1822

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1PIS8 KIF13B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 8.8e-16, P = 8.8e-16
 Identities = 42/99 (42%), Positives = 62/99 (62%)

Query:    12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
             +PEW+  GE V +   N  G++ YIGPT+F  GTW+GVELD P+GKNDG++ G +YF+  
Sbjct:  1642 VPEWLREGEYVTVGT-NKMGIVRYIGPTDFQEGTWIGVELDLPSGKNDGSIGGKQYFKCN 1700

Query:    72 PKHGIFVRADKLIQD-----RRGRAMRSGGTGAMRRSTS 105
             P +G+ VR  ++ +      RR   +R  G    RRS++
Sbjct:  1701 PGYGLLVRPGRVRRAAGAGRRRSAGLRLQGAPEPRRSST 1739

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1PIS5 KIF13B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 42/99 (42%), Positives = 62/99 (62%)

Query:    12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
             +PEW+  GE V +   N  G++ YIGPT+F  GTW+GVELD P+GKNDG++ G +YF+  
Sbjct:  1849 VPEWLREGEYVTVGT-NKMGIVRYIGPTDFQEGTWIGVELDLPSGKNDGSIGGKQYFKCN 1907

Query:    72 PKHGIFVRADKLIQD-----RRGRAMRSGGTGAMRRSTS 105
             P +G+ VR  ++ +      RR   +R  G    RRS++
Sbjct:  1908 PGYGLLVRPGRVRRAAGAGRRRSAGLRLQGAPEPRRSST 1946

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F8VPJ2 KIF13B "Kinesin-like protein KIF13B" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 44/108 (40%), Positives = 64/108 (59%)

Query:     2 SGDQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGT 61
             S  +  D+V  PEW+  GE V +  + + GV+ Y+GP +F  GTWVGVELD P+GKNDG+
Sbjct:  1689 SDSEEADEV--PEWLREGEFVTVGAHKT-GVVRYVGPADFQEGTWVGVELDLPSGKNDGS 1745

Query:    62 VQGTRYFESRPKHGIFVRADKLIQD-----RRGRAMRSGGTGAMRRST 104
             + G +YF   P +G+ VR  ++ +      RR   +R G   A R +T
Sbjct:  1746 IGGKQYFRCNPGYGLLVRPSRVRRATGPVRRRSTGLRLGAPEARRSAT 1793

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|Q9NQT8 KIF13B "Kinesin-like protein KIF13B" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 44/108 (40%), Positives = 64/108 (59%)

Query:     2 SGDQSFDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGT 61
             S  +  D+V  PEW+  GE V +  + + GV+ Y+GP +F  GTWVGVELD P+GKNDG+
Sbjct:  1689 SDSEEADEV--PEWLREGEFVTVGAHKT-GVVRYVGPADFQEGTWVGVELDLPSGKNDGS 1745

Query:    62 VQGTRYFESRPKHGIFVRADKLIQD-----RRGRAMRSGGTGAMRRST 104
             + G +YF   P +G+ VR  ++ +      RR   +R G   A R +T
Sbjct:  1746 IGGKQYFRCNPGYGLLVRPSRVRRATGPVRRRSTGLRLGAPEARRSAT 1793

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0006605 "protein targeting" evidence=TAS

GO:0042110 "T cell activation" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007165 "signal transduction" evidence=NAS

GO:0050770 "regulation of axonogenesis" evidence=IDA

GO:0071889 "14-3-3 protein binding" evidence=IDA

GO:0030424 "axon" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
pfam01302	67	pfam01302, CAP_GLY, CAP-Gly domain	4e-30
smart01052	68	smart01052, CAP_GLY, Cytoskeleton-associated prote	4e-27
COG5244	669	COG5244, NIP100, Dynactin complex subunit involved	3e-20

>gnl|CDD|216424 pfam01302, CAP_GLY, CAP-Gly domain

 Score =  101 bits (255), Expect = 4e-30
 Identities = 36/67 (53%), Positives = 44/67 (65%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ V +      G + Y+GP  FA G WVGVELD P GKNDG+V G RYFE  PK+GIF
Sbjct: 1  VGDRVEVLGGGRRGTVRYVGPVPFAPGLWVGVELDEPRGKNDGSVDGVRYFECPPKYGIF 60

Query: 78 VRADKLI 84
          VR  K+ 
Sbjct: 61 VRPSKVE 67

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 67

>gnl|CDD|214997 smart01052, CAP_GLY, Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network

 Score = 94.2 bits (235), Expect = 4e-27
 Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESRPKHGI 76
          +G+ V +      G + Y+GPT FA G WVGVELD P  GKNDG+V+G RYFE  PKHGI
Sbjct: 1  VGDRVEVGGGGRRGTVRYVGPTPFAPGVWVGVELDEPLRGKNDGSVKGVRYFECPPKHGI 60

Query: 77 FVRADKL 83
          FVR  K+
Sbjct: 61 FVRPSKV 67

A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 68

>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

 Score = 83.6 bits (206), Expect = 3e-20
 Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          + + VL+   +  G + +IG T+F  G W+G+ELD P GKNDG+V G RYF  + +HGIF
Sbjct: 6  VNDRVLLG--DKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63

Query: 78 VRAD 81
          +R D
Sbjct: 64 IRPD 67

Length = 669

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF01302	69	CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytos	99.96
KOG3206|consensus	234		99.9
KOG0971|consensus	1243		99.85
COG5244	669	NIP100 Dynactin complex subunit involved in mitoti	99.82
KOG3207|consensus	505		99.75
KOG4568|consensus	664		99.68
KOG3556|consensus	724		99.34
KOG0241|consensus	1714		99.32
KOG4568|consensus	664		99.21
PTZ00243	1560	ABC transporter; Provisional	95.78
PF10781	62	DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSR	94.83
PRK10708	62	hypothetical protein; Provisional	94.58
PF09926	53	DUF2158: Uncharacterized small protein (DUF2158);	91.08

>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain

Probab=99.96  E-value=1.1e-28  Score=158.05  Aligned_cols=67  Identities=57%  Similarity=1.086  Sum_probs=59.7

Q ss_pred             ccCeEEEe-CCCceEEEEEEeecC-CCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcc
Q psy6084          18 LGESVLIR-PYNSSGVIAYIGPTE-FAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLI   84 (106)
Q Consensus        18 vG~rV~v~-~~~~~GtVRyiG~~~-~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~   84 (106)
                      |||||.|. .....|||||+|+++ ...|+|+|||||++.|+|||+++|+|||+|+|+||+||++++|.
T Consensus         1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~~~~G~Fv~~~~v~   69 (69)
T PF01302_consen    1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECPPNHGIFVRPSKVE   69 (69)
T ss_dssp             TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SSTTTEEEEEGGGE-
T ss_pred             CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeCCCCEEEecHHHCC
Confidence            79999992 347999999999999 67789999999999999999999999999999999999999874

The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....

>KOG3206|consensus

Probab=99.90  E-value=4.4e-24  Score=161.99  Aligned_cols=72  Identities=44%  Similarity=0.861  Sum_probs=67.4

Q ss_pred             CcccccCeEEEe-CC--CceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084          14 EWVCLGESVLIR-PY--NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        14 ~~l~vG~rV~v~-~~--~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      ..+.||+||+|+ +.  ..+|+|||+|++++.+|+|+|||+|||.|||||+++|++||+|+|+||.||+|..|..
T Consensus       147 ~~i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF~c~p~yGgfVrP~~V~V  221 (234)
T KOG3206|consen  147 ATIAVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYFECAPKYGGFVRPRAVTV  221 (234)
T ss_pred             hccccCCeeEEecCCCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEeeecCCccCCccccceeee
Confidence            348999999998 43  4899999999999999999999999999999999999999999999999999999985

>KOG0971|consensus

Probab=99.85  E-value=1.6e-21  Score=170.45  Aligned_cols=73  Identities=45%  Similarity=0.848  Sum_probs=69.9

Q ss_pred             CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcc
Q psy6084          12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLI   84 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~   84 (106)
                      .+..|+||.||.|.+++..|+|.|+|.+.|..|.||||-||+|.||||||++|++||+|++|||+||+.+.|.
T Consensus         2 s~r~lkvG~RVevtgknl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r   74 (1243)
T KOG0971|consen    2 SPRSLKVGTRVEVTGKNLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVR   74 (1243)
T ss_pred             CCccccccceEEeccCCccceEEEecccccccCceEEEEeccccCCCCCcccceeeEecCCCcceEeehhhhH
Confidence            3678999999999988999999999999999999999999999999999999999999999999999999965

>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

Probab=99.82  E-value=1.7e-20  Score=156.28  Aligned_cols=67  Identities=45%  Similarity=0.969  Sum_probs=62.6

Q ss_pred             cccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCc
Q psy6084          15 WVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKL   83 (106)
Q Consensus        15 ~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv   83 (106)
                      -|.+||+|.+.  ...|+|||+|.+.+..|+|+|||||+|.|+|||+++|+|||.|+.+||+|+++..=
T Consensus         3 ~lSv~D~Vll~--~~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk~~giFir~~~~   69 (669)
T COG5244           3 LLSVNDRVLLG--DKFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDD   69 (669)
T ss_pred             eeecCCEEEec--cccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEEEecCCcceEEecCch
Confidence            36799999997  67899999999999999999999999999999999999999999999999997654

>KOG3207|consensus

Probab=99.75  E-value=1.6e-18  Score=143.40  Aligned_cols=72  Identities=36%  Similarity=0.674  Sum_probs=67.0

Q ss_pred             cccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCC-CCCCcEECCEEeeEeC-CCCeeEEecCCccccCC
Q psy6084          15 WVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFESR-PKHGIFVRADKLIQDRR   88 (106)
Q Consensus        15 ~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~-Gk~dGt~~G~rYF~c~-p~~GiFv~~~kv~~~~~   88 (106)
                      .+.||+||.|.  ...+||||+|.+++..+.|+|||||++. |||||+++|++||.|. |+.|+|+++.+|.+.+.
T Consensus         2 ~~~IG~RvkI~--~~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p~d   75 (505)
T KOG3207|consen    2 TMEIGTRVKIG--GEIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFPTD   75 (505)
T ss_pred             ceeccceEEEc--CEEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCCcc
Confidence            46899999997  6889999999999999999999999996 9999999999999998 99999999999987543

>KOG4568|consensus

Probab=99.68  E-value=2.1e-17  Score=141.95  Aligned_cols=80  Identities=39%  Similarity=0.716  Sum_probs=71.2

Q ss_pred             CCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084           8 DDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR   87 (106)
Q Consensus         8 ~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~   87 (106)
                      .+...-..+.||++|+|.. +..|.|||+|++++..|+|+||+|++|.|||||+|+|++||.|.+.+|+|++..+.....
T Consensus        10 ~q~~~~~~~~ig~~v~v~~-~~~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~kgif~~~~~~t~~~   88 (664)
T KOG4568|consen   10 VQLDDLGQFIIGRRVWVNN-VELGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYFQCEPKKGIFFRQGRGTASK   88 (664)
T ss_pred             chhhhhhhhhhcceEEecC-CcceeeeeccCcccccceeeceeeccccCCCCcccchhhhhccccccceeeccccccccc
Confidence            3455567789999999973 688999999999999999999999999999999999999999999999999888777543


Q ss_pred             C
Q psy6084          88 R   88 (106)
Q Consensus        88 ~   88 (106)
                      .
T Consensus        89 ~   89 (664)
T KOG4568|consen   89 N   89 (664)
T ss_pred             c
Confidence            3

>KOG3556|consensus

Probab=99.34  E-value=2.1e-12  Score=109.11  Aligned_cols=80  Identities=25%  Similarity=0.347  Sum_probs=72.3

Q ss_pred             CcccccCeEEEeCC----CceEEEEEEeecCCCCCeEEEEEEcCC-----CCCCCcEECCEEeeEeCCCCeeEEecCCcc
Q psy6084          14 EWVCLGESVLIRPY----NSSGVIAYIGPTEFAAGTWVGVELDAP-----TGKNDGTVQGTRYFESRPKHGIFVRADKLI   84 (106)
Q Consensus        14 ~~l~vG~rV~v~~~----~~~GtVRyiG~~~~~~g~~vGVElde~-----~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~   84 (106)
                      ..|+||+.|.|...    .+.|+|||||.-|...++|+|||+++.     .+..||++.|.|||+|-.+..+||+...+.
T Consensus       234 ~~L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~scs  313 (724)
T KOG3556|consen  234 LNLKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGSCS  313 (724)
T ss_pred             ccceecceEEecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCCCC
Confidence            45899999999732    588999999999999999999999976     378999999999999999999999999999


Q ss_pred             ccCCCcccc
Q psy6084          85 QDRRGRAMR   93 (106)
Q Consensus        85 ~~~~~~~~~   93 (106)
                      .|+++....
T Consensus       314 ~d~rfa~l~  322 (724)
T KOG3556|consen  314 VDPRFARLY  322 (724)
T ss_pred             cCcccchhc
Confidence            999998764

>KOG0241|consensus

Probab=99.32  E-value=1.1e-12  Score=116.53  Aligned_cols=76  Identities=38%  Similarity=0.643  Sum_probs=69.0

Q ss_pred             CCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084           8 DDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR   87 (106)
Q Consensus         8 ~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~   87 (106)
                      +...+|+|+..|.+|.+.. ..+++|||+|..++..    |||||.|.|+|||+..|++||.|.|++|.||+++++..++
T Consensus      1623 ~~~~~pew~~~ge~v~~~~-h~t~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyfrc~p~~g~~vr~s~~~~~~ 1697 (1714)
T KOG0241|consen 1623 PSKISPEWRGFGERVVTVE-HTTNVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYFRCLPNKGGGVRVSDGLHHP 1697 (1714)
T ss_pred             hhhcCchhhhcCceeEEee-cccceeeecchhhccC----cccccCCCCCcCccccceeEEeecCCCCCcccchhhccCc
Confidence            3567899999999998874 5678999999998865    9999999999999999999999999999999999999876


Q ss_pred             C
Q psy6084          88 R   88 (106)
Q Consensus        88 ~   88 (106)
                      +
T Consensus      1698 ~ 1698 (1714)
T KOG0241|consen 1698 S 1698 (1714)
T ss_pred             H
Confidence            5

>KOG4568|consensus

Probab=99.21  E-value=2.7e-12  Score=110.68  Aligned_cols=75  Identities=44%  Similarity=0.775  Sum_probs=69.4

Q ss_pred             CCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          11 TLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        11 ~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      .....+.+||||.+. .+..|++||.|...+..|-|+|||||+|.|++||++.+++||.|+|.+|+|.+..++...
T Consensus       150 ~~~~~l~v~dr~l~~-gq~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~~~k~ky~~f~~v~kv~~~  224 (664)
T KOG4568|consen  150 TSMLGLRVGDRVLVG-GQKSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYFQCKPKYGKFAPVQKVFKI  224 (664)
T ss_pred             cCccccccccceeec-CcccchhhhhccccccCCcccchhcccccccccccccccccccCcchhcchhHHHHHhhc
Confidence            345678999999997 478899999999999999999999999999999999999999999999999999999864

>PTZ00243 ABC transporter; Provisional

Probab=95.78  E-value=0.012  Score=55.53  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=44.1

Q ss_pred             cccCeEEEeC-CCceEEEEEEeecC--CCCCeEEEEEEcCC-----------C---CCCCcEECCEEeeEeC
Q psy6084          17 CLGESVLIRP-YNSSGVIAYIGPTE--FAAGTWVGVELDAP-----------T---GKNDGTVQGTRYFESR   71 (106)
Q Consensus        17 ~vG~rV~v~~-~~~~GtVRyiG~~~--~~~g~~vGVElde~-----------~---Gk~dGt~~G~rYF~c~   71 (106)
                      -||.+|-+.. ..-.|++||+|.+.  +.++.++||||.-|           .   +-|||.++|.++|.-.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1560)
T PTZ00243        126 MVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPE  197 (1560)
T ss_pred             ccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcc
Confidence            5788988862 35779999999996  35679999999954           1   2589999999999854

>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose []

Probab=94.83  E-value=0.17  Score=31.77  Aligned_cols=56  Identities=27%  Similarity=0.497  Sum_probs=41.0

Q ss_pred             ccccCeEEEeC---CCceEEEEEEeecCCCCCeEEEEEEcC-CCCCCCcEECCEEeeE-eCCCCeeEEecC
Q psy6084          16 VCLGESVLIRP---YNSSGVIAYIGPTEFAAGTWVGVELDA-PTGKNDGTVQGTRYFE-SRPKHGIFVRAD   81 (106)
Q Consensus        16 l~vG~rV~v~~---~~~~GtVRyiG~~~~~~g~~vGVElde-~~Gk~dGt~~G~rYF~-c~p~~GiFv~~~   81 (106)
                      ++|.|||.|..   ..+.|+|.-+  =++..|+++-|.|++ |.|        +-||. ....-|+||.+.
T Consensus         1 MkvnD~VtVKTDG~~rR~G~ilav--E~F~EG~MYLvaL~dYP~G--------iWFFNE~~~~dG~FVep~   61 (62)
T PF10781_consen    1 MKVNDRVTVKTDGGPRREGVILAV--EPFNEGTMYLVALEDYPAG--------IWFFNEKDSPDGTFVEPR   61 (62)
T ss_pred             CccccEEEEecCCcccccceEEEE--eeccCcEEEEEEcCcCCcc--------eEEEecCCCCCcEEeeec
Confidence            37899999973   2466888766  356789999999997 445        33676 457789999764

>PRK10708 hypothetical protein; Provisional

Probab=94.58  E-value=0.21  Score=31.28  Aligned_cols=55  Identities=29%  Similarity=0.555  Sum_probs=40.7

Q ss_pred             ccccCeEEEeC---CCceEEEEEEeecCCCCCeEEEEEEcC-CCCCCCcEECCEEeeE-eCCCCeeEEec
Q psy6084          16 VCLGESVLIRP---YNSSGVIAYIGPTEFAAGTWVGVELDA-PTGKNDGTVQGTRYFE-SRPKHGIFVRA   80 (106)
Q Consensus        16 l~vG~rV~v~~---~~~~GtVRyiG~~~~~~g~~vGVElde-~~Gk~dGt~~G~rYF~-c~p~~GiFv~~   80 (106)
                      ++|.|||.|..   ..+.|+|.-+  =++..|+++-|.|++ |.|        +-||. ....-|+||.+
T Consensus         1 MkvnD~VtVKTDG~~rR~G~iLav--E~F~EG~MyLvaL~dYP~G--------iWFFNE~~~~~G~FVep   60 (62)
T PRK10708          1 MKVNDRVTVKTDGGPRRPGVVLAV--EEFSEGTMYLVSLEDYPLG--------IWFFNEAGHQDGIFVEK   60 (62)
T ss_pred             CccccEEEEecCCCccccceEEEE--eeccCcEEEEEEcCcCCCc--------eEEEeccCCCCceEecc
Confidence            37899999973   2466888776  356789999999997 445        34776 44778999965

>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function

Probab=91.08  E-value=1.1  Score=27.24  Aligned_cols=47  Identities=21%  Similarity=0.377  Sum_probs=37.4

Q ss_pred             ccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEE
Q psy6084          16 VCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTV   62 (106)
Q Consensus        16 l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~   62 (106)
                      +++||.|++.+++..=||.++|+.....+.|+=-.|-+..+...++|
T Consensus         1 f~~GDvV~LKSGGp~MTV~~v~~~~~~~~~~v~C~WFd~~~~~~~~F   47 (53)
T PF09926_consen    1 FKIGDVVQLKSGGPRMTVTEVGPNAGASGGWVECQWFDGHGEQRETF   47 (53)
T ss_pred             CCCCCEEEEccCCCCeEEEEccccccCCCCeEEEEeCCCCCcccccc
Confidence            57899999987666779999999877778888888888776654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
2cow_A	100	Solution Structure Of The Cap-Gly Domain In Human K		9e-16
2cp3_A	84	Solution Structure Of The 2nd Cap-Gly Domain In Hum		1e-14
2cp6_A	172	Solution Structure Of The 2nd Cap-Gly Domain In Hum		3e-14
2e4h_A	98	Solution Structure Of Cytoskeletal Protein In Compl		4e-14
2e3h_A	90	Crystal Structure Of The Clip-170 Cap-Gly Domain 2		4e-14
2cp0_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-13
2cp5_A	141	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-13
2cp7_A	84	Solution Structure Of The 1st Cap-Gly Domain In Mou		3e-13
2e3i_A	86	Crystal Structure Of The Clip-170 Cap-Gly Domain 1		4e-13
3rdv_A	72	Structure Of The Slain2c-Clipcg1 Complex Length = 7		4e-13
2coy_A	112	Solution Structure Of The Cap-Gly Domain In Human D		7e-13
1whh_A	102	Solution Structure Of The 2nd Cap-Gly Domain In Mou		7e-13
1txq_A	93	Crystal Structure Of The Eb1 C-Terminal Domain Comp		8e-13
3tq7_P	71	Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do		9e-13
2hkn_A	97	Crystal Structure Of The Cap-Gly Domain Of Human Dy		1e-12
1tov_A	98	Structural Genomics Of Caenorhabditis Elegans: Cap-		1e-12
1lpl_A	95	Structural Genomics Of Caenorhabditis Elegans: Cap-		2e-12
2qk0_A	74	Structural Basis Of Microtubule Plus End Tracking B		2e-12
1whk_A	91	Solution Structure Of The 3rd Cap-Gly Domain In Mou		2e-12
2hl3_A	97	Crystal Structure Of The A49m Mutant Cap-Gly Domain		2e-12
2cp2_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-12
1whg_A	113	Solution Structure Of The Cap-Gly Domain In Mouse T		1e-11
1whj_A	102	Solution Structure Of The 1st Cap-Gly Domain In Mou		4e-11
4b6m_A	84	Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gl		4e-11
2coz_A	122	Solution Structure Of The Cap-Gly Domain In Human C		5e-11
2z0w_A	96	Crystal Structure Of The 2nd Cap-Gly Domain In Huma		1e-10

>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin- Like Protein Kif13b Length = 100

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
          +PEW+  GE V +  + + GV+ Y+GP +F  GTWVGVELD P+GKNDG++ G +YF   
Sbjct: 20 VPEWLREGEFVTVGAHKT-GVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 78
Query: 72 PKHGIFVRADKL 83
          P +G+ VR  ++
Sbjct: 79 PGYGLLVRPSRV 90

>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 115CYLN2 Length = 84

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          LG+ VL+     +GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+  PK G+F
Sbjct: 10 LGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 68
Query: 78 VRADKLIQ 85
              K+I+
Sbjct: 69 APIHKVIR 76

>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 170RESTIN Length = 172

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 41  IGDRVLVG-GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 99
Query: 78  VRADKLIQ 85
               K+ +
Sbjct: 100 APVHKVTK 107

>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 98

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 12 IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 70
Query: 78 VRADKLIQ 85
              K+ +
Sbjct: 71 APVHKVTK 78

>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2 Length = 90

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 4  IGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 62
Query: 78 VRADKLIQ 85
              K+ +
Sbjct: 63 APVHKVTK 70

>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170-Related Protein Clipr59 Length = 95

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          LG+ VL+     +G + + G TEFA+G WVGVELD P GKNDG+V G RYF   PK G+F
Sbjct: 19 LGDRVLLDG-QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 77
Query: 78 VRADKL 83
              K+
Sbjct: 78 ASVSKI 83

>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170RESTIN Length = 141

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 38/62 (61%)
Query: 28  NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR 87
           N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P  GIF R  KL +  
Sbjct: 76  NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV 135
Query: 88  RG 89
            G
Sbjct: 136 SG 137

>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse Clip- 170RESTIN Length = 84

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P  GIF
Sbjct: 10 VGERVWVN-GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 68
Query: 78 VRADKLIQDRRG 89
           R  KL +   G
Sbjct: 69 TRPSKLTRKVSG 80

>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1 Length = 86

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P  GIF
Sbjct: 5  VGERVWVN-GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 63
Query: 78 VRADKL 83
           R  KL
Sbjct: 64 TRPSKL 69

>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex Length = 72

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P  GIF
Sbjct: 5  VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 63
Query: 78 VRADKL 83
           R  KL
Sbjct: 64 TRPSKL 69

>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin 1 Length = 112

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF     HGIF
Sbjct: 36  VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 95
Query: 78  VRADKL 83
           VR  ++
Sbjct: 96  VRQSQI 101

>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse Clip170-Related 59kda Protein Clipr-59 Length = 102

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VL+      G++ + G T+FA G W G+ELD PTGK+DG+V G RYF   P+HG+F
Sbjct: 28 VGDQVLVAG-QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 86
Query: 78 VRADKL 83
            A ++
Sbjct: 87 APASRI 92

>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 93

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF     HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
Query: 78 VRADKL 83
          VR  ++
Sbjct: 75 VRQSQI 80

>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 71

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF     HGIF
Sbjct: 3  VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 62
Query: 78 VRADKL 83
          VR  ++
Sbjct: 63 VRQSQI 68

>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human Dynactin-1 (P150- Glued) Length = 97

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF     HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
Query: 78 VRADKL 83
          VR  ++
Sbjct: 75 VRQSQI 80

>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 98

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
          G +AY+G T+F  G WVGV+ D P GKNDG+V G RYF+  PK+G FVR
Sbjct: 33 GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVR 81

>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 95

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
          G +AY+G T+F  G WVGV+ D P GKNDG+V G RYF+  PK+G FVR
Sbjct: 30 GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVR 78

>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 74

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P  GIF
Sbjct: 6  VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 64
Query: 78 VRADK 82
           R  K
Sbjct: 65 TRPSK 69

>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 91

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 19 GESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFV 78
          G  VL+   N    + Y+GPT+FA+G W+G+EL +  GKNDG V   RYF  +P +G+ V
Sbjct: 16 GSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLV 75
Query: 79 RADKL 83
          R  ++
Sbjct: 76 RPSRV 80

>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of Human Dynactin-1 (P150-Glued) In Complex With Human Eb1 C- Terminal Hexapeptide Length = 97

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF     HGIF
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
Query: 78 VRADKL 83
          VR  ++
Sbjct: 75 VRQSQI 80

>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 115CYLN2 Length = 95

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 36/59 (61%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG 89
          GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE     GIF R  KL +   G
Sbjct: 33 GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPSG 91

>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin Specific Chaperone B Length = 113

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVR 79
          G + Y+G T+F  G WVGV  D P GKNDG+V G RYFE + K+G FV+
Sbjct: 51 GTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVK 99

>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 102

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          LG+ V+I      G + + G TEFA+G W G+ELD P GKN+G+V   +YF+  PK+GIF
Sbjct: 27 LGDRVVIAG-QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIF 85
Query: 78 VRADKL 83
              K+
Sbjct: 86 APLSKI 91

>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly Domain Length = 84

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 14 EWVCLGESVLIRPYNSSGVIAYIG-PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
          E + +G+  L RP +  G + ++G       G WVGVE D P GK DGTV+GTR F+ +P
Sbjct: 4  ETIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQP 63
Query: 73 KHGIFVRADKL 83
           +G F+R D++
Sbjct: 64 NYGGFLRPDQV 74

>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Centrosome-Associated Protein Cap350 Length = 122

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VLI      G++ + G T FA G W GVELD P G N+GT  G  YFE + KHGIF
Sbjct: 34 IGDRVLIGNVQP-GILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF 92
Query: 78 VRADKL 83
              K+
Sbjct: 93 APPQKI 98

>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human Restin- Like Protein 2 Reveals A Swapped-Dimer Length = 96

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          LGE VL+      G I + G T FA G W G+EL+ P GKNDG+V G +YF   P++GIF
Sbjct: 13 LGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIF 71
Query: 78 VRADKL 83
              ++
Sbjct: 72 APPSRV 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	2e-31
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	1e-30
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	2e-30
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	4e-30
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	7e-30
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	1e-29
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	3e-29
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	4e-29
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	6e-29
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	7e-29
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	1e-28
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	2e-28
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	2e-28
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	7e-28
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	8e-28
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	8e-28
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	3e-27
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	3e-27
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	3e-26
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	3e-22
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	2e-11

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 91

 Score =  105 bits (263), Expect = 2e-31
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
             +  G  VL+   N    + Y+GPT+FA+G W+G+EL +  GKNDG V   RYF  +P
Sbjct: 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69

Query: 73 KHGIFVRADKLI 84
           +G+ VR  ++ 
Sbjct: 70 NYGVLVRPSRVT 81

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P Length = 93

 Score =  103 bits (259), Expect = 1e-30
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
             + +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF    
Sbjct: 10 ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69

Query: 73 KHGIFVRADKL 83
           HGIFVR  ++
Sbjct: 70 GHGIFVRQSQI 80

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 112

 Score =  103 bits (259), Expect = 2e-30
 Identities = 33/71 (46%), Positives = 41/71 (57%)

Query: 13  PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
              + +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF    
Sbjct: 31  ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 90

Query: 73  KHGIFVRADKL 83
            HGIFVR  ++
Sbjct: 91  GHGIFVRQSQI 101

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A Length = 72

 Score =  101 bits (254), Expect = 4e-30
 Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPK 73
          +   +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P 
Sbjct: 1  DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 74 HGIFVRADKL 83
           GIF R  KL
Sbjct: 60 KGIFTRPSKL 69

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1 Length = 86

 Score =  101 bits (253), Expect = 7e-30
 Identities = 33/70 (47%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPK 73
          +   +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P 
Sbjct: 1  DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 74 HGIFVRADKL 83
           GIF R  KL
Sbjct: 60 KGIFTRPSKL 69

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A Length = 95

 Score =  100 bits (252), Expect = 1e-29
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 13 PEWVCLGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE 69
           + + +G    +         G +AY+G T+F  G WVGV+ D P GKNDG+V G RYF+
Sbjct: 9  AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFD 68

Query: 70 SRPKHGIFVRADKL 83
            PK+G FVR   +
Sbjct: 69 CDPKYGGFVRPVDV 82

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 100

 Score =  100 bits (250), Expect = 3e-29
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
          +PEW+  GE V +   + +GV+ Y+GP +F  GTWVGVELD P+GKNDG++ G +YF   
Sbjct: 20 VPEWLREGEFVTVGA-HKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 78

Query: 72 PKHGIFVRADKL 83
          P +G+ VR  ++
Sbjct: 79 PGYGLLVRPSRV 90

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 96

 Score = 99.4 bits (248), Expect = 4e-29
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
             + LGE VL+      G I + G T FA G W G+EL+ P GKNDG+V G +YF   P
Sbjct: 8  EGELRLGERVLV-VGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP 66

Query: 73 KHGIFVRADKL 83
          ++GIF    ++
Sbjct: 67 RYGIFAPPSRV 77

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 84

 Score = 98.9 bits (247), Expect = 6e-29
 Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
             + LG+ VL+    + GV+ Y+G T+FA G W GVELD P GKNDG V GTRYF+  P
Sbjct: 5  SSGLRLGDRVLVGGTKT-GVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63

Query: 73 KHGIFVRADKLIQ 85
          K G+F    K+I+
Sbjct: 64 KFGLFAPIHKVIR 76

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score = 99.1 bits (247), Expect = 7e-29
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
             + LG+ V+I      G + + G TEFA+G W G+ELD P GKN+G+V   +YF+  P
Sbjct: 22 SLGLKLGDRVVIAGQKV-GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80

Query: 73 KHGIFVRADKLI 84
          K+GIF    K+ 
Sbjct: 81 KYGIFAPLSKIS 92

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A Length = 90

 Score = 98.2 bits (245), Expect = 1e-28
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 18  LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
           +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 4   IGDRVLV-GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 62

Query: 78  VRADKLIQ-DRRGRAMRSGGTGAMRRS 103
               K+ +              A+RR 
Sbjct: 63  APVHKVTKIGFPSTTPAKAKANAVRRV 89

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 98.3 bits (245), Expect = 2e-28
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
             + LG+ VL+    + G + + G TEFA+G WVGVELD P GKNDG+V G RYF   P
Sbjct: 14 ALGLRLGDRVLLDGQKT-GTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP 72

Query: 73 KHGIFVRADKLIQDRRGRAMRSG 95
          K G+F    K+ +        SG
Sbjct: 73 KQGLFASVSKISKAVDASGPSSG 95

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A Length = 95

 Score = 97.9 bits (244), Expect = 2e-28
 Identities = 34/72 (47%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
               +GE V +      GV+ Y+G T+FA G W GV LD P GKNDG V G RYFE   
Sbjct: 16 LGDFVVGERVWVNGVKP-GVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPA 74

Query: 73 KHGIFVRADKLI 84
            GIF R  KL 
Sbjct: 75 LQGIFTRPSKLT 86

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 122

 Score = 97.3 bits (242), Expect = 7e-28
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VLI      G++ + G T FA G W GVELD P G N+GT  G  YFE + KHGIF
Sbjct: 34 IGDRVLI-GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF 92

Query: 78 VRADKL 83
              K+
Sbjct: 93 APPQKI 98

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 141

 Score = 97.7 bits (243), Expect = 8e-28
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 13  PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
            +   +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P
Sbjct: 62  VDDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 120

Query: 73  KHGIFVRADKL 83
             GIF R  KL
Sbjct: 121 LKGIFTRPSKL 131

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score = 96.4 bits (240), Expect = 8e-28
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VL+      G++ + G T+FA G W G+ELD PTGK+DG+V G RYF   P+HG+F
Sbjct: 28 VGDQVLV-AGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 86

Query: 78 VRADKL 83
            A ++
Sbjct: 87 APASRI 92

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1 Length = 113

 Score = 95.4 bits (237), Expect = 3e-27
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 1   MSGDQSFDDVTLPEWVCLGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGK 57
            +  +  ++      + +G    +R  + S   G + Y+G T+F  G WVGV  D P GK
Sbjct: 18  EAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGK 77

Query: 58  NDGTVQGTRYFESRPKHGIFVRADKLI 84
           NDG+V G RYFE + K+G FV+   + 
Sbjct: 78  NDGSVNGKRYFECQAKYGAFVKPSAVT 104

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 104

 Score = 94.8 bits (236), Expect = 3e-27
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 13 PEWVCLGESVLIRPYNSS-GVIAYIGPTEFAAGTWVGVELDAPT-GKNDGTVQGTRYFES 70
             + +G    ++      GVI +IG          G+EL+    G  DGT +GTRYF  
Sbjct: 15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTC 74

Query: 71 RPKHGIFVRADKLIQDRRGRAM 92
            K  +FV+      D R  ++
Sbjct: 75 ALKKALFVKLKSCRPDSRFASL 96

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 172

 Score = 94.8 bits (235), Expect = 3e-26
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 13  PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
              + +G+ VL+     +GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +P
Sbjct: 36  ERELKIGDRVLV-GGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 94

Query: 73  KHGIFVRADKLIQDRRGRAMRSGGTGAMRRSTSR 106
           K+G+F    K+ +        +       R    
Sbjct: 95  KYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMA 128

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 82.1 bits (203), Expect = 3e-22
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 18 LGESVLIRPYNSS----GVIAYIGP---TEFAAGTWVGVEL---DAPTGKNDGTVQGTRY 67
          +G  V ++  +      GV+ + GP       +G + GVEL       G  DG  QG + 
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQL 69

Query: 68 FESRPKHGIFVRADKL 83
          F+     G+FV  DKL
Sbjct: 70 FQCDEDCGVFVALDKL 85

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 92

 Score = 54.8 bits (131), Expect = 2e-11
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 21 SVLIRPYNSSGVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE-SRPKHGIF 77
          S+ +     SG + +    P + + G +VGV++D P G  DG   G +    +  +  I 
Sbjct: 17 SLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTIL 76

Query: 78 VRADKLIQDRRG 89
          +  + +I +  G
Sbjct: 77 LHINDIIPESSG 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	99.97
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	99.97
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	99.97
4b6m_A	84	Tubulin-specific chaperone, putative; structural p	99.97
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	99.97
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.97
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.97
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	99.97
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	99.97
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.97
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.97
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	99.97
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	99.96
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	99.96
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	99.96
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	99.96
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.96
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	99.96
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	99.96
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	99.96
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	99.95
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.95

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.97  E-value=1.8e-31  Score=182.47  Aligned_cols=87  Identities=28%  Similarity=0.381  Sum_probs=78.3

Q ss_pred             CCCCCCcccccCeEEEeCC-CceEEEEEEeecCCCCCeEEEEEE-cCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084           9 DVTLPEWVCLGESVLIRPY-NSSGVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus         9 ~~~~~~~l~vG~rV~v~~~-~~~GtVRyiG~~~~~~g~~vGVEl-de~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      +...+..|+|||||+|... ..+|||||+|++++..|.|+|||| |++.|||||+++|+|||+|+|+||+||++++|..+
T Consensus        11 ~~~~~~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~   90 (104)
T 1ixd_A           11 PPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPD   90 (104)
T ss_dssp             TTTSSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEEC
T ss_pred             CCCCCcccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceec
Confidence            3344567999999999732 588999999999999999999999 88999999999999999999999999999999999


Q ss_pred             CCCccccCC
Q psy6084          87 RRGRAMRSG   95 (106)
Q Consensus        87 ~~~~~~~~~   95 (106)
                      +++.++...
T Consensus        91 ~rf~~~~~~   99 (104)
T 1ixd_A           91 SRFASLQPS   99 (104)
T ss_dssp             CTTCCCCSS
T ss_pred             cccccCCCC
Confidence            999987543

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.97  E-value=1.9e-31  Score=178.60  Aligned_cols=81  Identities=35%  Similarity=0.657  Sum_probs=74.5

Q ss_pred             CCCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084           7 FDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus         7 ~~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      .++.+.++.|+|||||+|......|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.
T Consensus         4 ~s~~~~~~~~~vG~rV~V~~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~   83 (91)
T 1whk_A            4 GSSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYR   83 (91)
T ss_dssp             SSSSCCCCCCCSSCEEEESSSCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECC
T ss_pred             CCCCCCCccccCCCEEEECCCCeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEc
Confidence            45667788899999999975478999999999999999999999999999999999999999999999999999999864


Q ss_pred             C
Q psy6084          87 R   87 (106)
Q Consensus        87 ~   87 (106)
                      .
T Consensus        84 ~   84 (91)
T 1whk_A           84 G   84 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P

Probab=99.97  E-value=2.1e-31  Score=178.89  Aligned_cols=80  Identities=43%  Similarity=0.705  Sum_probs=69.5

Q ss_pred             CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcc
Q psy6084          12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA   91 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~   91 (106)
                      .+..|+|||||.|...+..|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-....+
T Consensus         9 ~~~~~~vG~rv~v~~~~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~~~   88 (93)
T 1txq_A            9 SARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGAD   88 (93)
T ss_dssp             --CCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEECC----
T ss_pred             ccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEccCCCC
Confidence            34578999999997556899999999999999999999999999999999999999999999999999999997544433

>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}

Probab=99.97  E-value=2.5e-31  Score=175.79  Aligned_cols=73  Identities=41%  Similarity=0.803  Sum_probs=67.2

Q ss_pred             CcccccCeEEEeCCCceEEEEEEeecC-CCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          14 EWVCLGESVLIRPYNSSGVIAYIGPTE-FAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        14 ~~l~vG~rV~v~~~~~~GtVRyiG~~~-~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      ++|+|||||+|.+.+.+|||||+|+++ +..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus         4 ~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~g   77 (84)
T 4b6m_A            4 ETIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVG   77 (84)
T ss_dssp             -CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEEC
T ss_pred             cCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEEC
Confidence            468999999997667899999999985 5789999999999999999999999999999999999999999864

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.97  E-value=5.1e-31  Score=179.22  Aligned_cols=80  Identities=44%  Similarity=0.932  Sum_probs=73.8

Q ss_pred             CCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCC
Q psy6084           9 DVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR   88 (106)
Q Consensus         9 ~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~   88 (106)
                      ..+++.+|+|||||.|. ....|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+...
T Consensus        17 ~~~~~~~l~vG~rV~V~-g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~   95 (100)
T 2cow_A           17 ADEVPEWLREGEFVTVG-AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATS   95 (100)
T ss_dssp             CCCCCSSCCTTCEEECS-SSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCC
T ss_pred             cccCCccccCCCEEEEC-CCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCC
Confidence            55778889999999996 36899999999999999999999999999999999999999999999999999999997654


Q ss_pred             C
Q psy6084          89 G   89 (106)
Q Consensus        89 ~   89 (106)
                      .
T Consensus        96 ~   96 (100)
T 2cow_A           96 G   96 (100)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A

Probab=99.97  E-value=4.8e-31  Score=177.89  Aligned_cols=80  Identities=43%  Similarity=0.728  Sum_probs=72.2

Q ss_pred             CCCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084           7 FDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus         7 ~~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      ....+.++.|+||+||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus        10 ~~~~~~~~~~~vG~rV~V~g-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~   88 (95)
T 2cp2_A           10 EVGDDFLGDFVVGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQ   88 (95)
T ss_dssp             CCCBSSCCSCCTTCEEEGGG-SCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSS
T ss_pred             hhhhhhhhcCcCCCEEEECC-ceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccC
Confidence            33445667799999999973 57999999999999999999999999999999999999999999999999999999864


Q ss_pred             C
Q psy6084          87 R   87 (106)
Q Consensus        87 ~   87 (106)
                      .
T Consensus        89 p   89 (95)
T 2cp2_A           89 P   89 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1

Probab=99.97  E-value=5.1e-31  Score=174.89  Aligned_cols=81  Identities=42%  Similarity=0.821  Sum_probs=70.8

Q ss_pred             CcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcccc
Q psy6084          14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRAMR   93 (106)
Q Consensus        14 ~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~~~   93 (106)
                      +.|+||+||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|....++....
T Consensus         1 d~~~vG~rv~v~g-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~~~   79 (86)
T 2e3i_A            1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEA   79 (86)
T ss_dssp             CCCCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC----
T ss_pred             CCccCCCEEEECC-CcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhhhc
Confidence            4689999999973 578999999999999999999999999999999999999999999999999999999888877554


Q ss_pred             CC
Q psy6084          94 SG   95 (106)
Q Consensus        94 ~~   95 (106)
                      +.
T Consensus        80 ~~   81 (86)
T 2e3i_A           80 NG   81 (86)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.97  E-value=9e-31  Score=178.53  Aligned_cols=79  Identities=39%  Similarity=0.798  Sum_probs=72.2

Q ss_pred             CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcc
Q psy6084          12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA   91 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~   91 (106)
                      .+..|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.....+.+
T Consensus        22 ~~~~~~VG~RV~V~g-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p~  100 (102)
T 1whh_A           22 EGAKAEVGDQVLVAG-QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGPS  100 (102)
T ss_dssp             SCCSSCTTSEEEETT-TEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCTT
T ss_pred             ccccCcCCCEEEECC-CcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCCC
Confidence            457799999999963 5789999999999999999999999999999999999999999999999999999997665543

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A

Probab=99.97  E-value=6e-31  Score=169.49  Aligned_cols=71  Identities=46%  Similarity=0.910  Sum_probs=66.0

Q ss_pred             CcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084          14 EWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        14 ~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      +.|+||+||+|.. +..|||||+|++++.+|.|+|||||+|.|||||+++|++||+|+|+||+||++++|+.
T Consensus         1 d~~~vG~rv~v~g-~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvsr   71 (72)
T 3rdv_A            1 DDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR   71 (72)
T ss_dssp             -CCCTTCEEEETT-TEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEEC
T ss_pred             CCcccCCEEEECC-CCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHccc
Confidence            3589999999973 5689999999999999999999999999999999999999999999999999999873

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.97  E-value=1.4e-30  Score=175.35  Aligned_cols=79  Identities=30%  Similarity=0.445  Sum_probs=71.2

Q ss_pred             CCCcccccCeEEEeC-C---CceEEEEEEeecC---CCCCeEEEEEEcCC---CCCCCcEECCEEeeEeCCCCeeEEecC
Q psy6084          12 LPEWVCLGESVLIRP-Y---NSSGVIAYIGPTE---FAAGTWVGVELDAP---TGKNDGTVQGTRYFESRPKHGIFVRAD   81 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~-~---~~~GtVRyiG~~~---~~~g~~vGVElde~---~Gk~dGt~~G~rYF~c~p~~GiFv~~~   81 (106)
                      .++.|+|||||+|.. .   ..+|||||+|+++   +.+|.|+|||||+|   .|||||+++|+|||+|+|+||+||+++
T Consensus         4 ~~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~   83 (95)
T 1whl_A            4 GSSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD   83 (95)
T ss_dssp             SCCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred             ccccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHH
Confidence            457799999999962 2   4789999999998   78999999999999   899999999999999999999999999


Q ss_pred             CccccCCCc
Q psy6084          82 KLIQDRRGR   90 (106)
Q Consensus        82 kv~~~~~~~   90 (106)
                      +|....+..
T Consensus        84 ~v~~~~~~p   92 (95)
T 1whl_A           84 KLELIESGP   92 (95)
T ss_dssp             GEEECCSCS
T ss_pred             HeEEcCcCC
Confidence            999876643

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.97  E-value=2.6e-30  Score=170.86  Aligned_cols=75  Identities=48%  Similarity=0.878  Sum_probs=69.0

Q ss_pred             CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084          12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR   87 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~   87 (106)
                      .+..|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-.
T Consensus         4 ~~~~~~vG~rv~v~g-~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~   78 (84)
T 2cp3_A            4 GSSGLRLGDRVLVGG-TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIG   78 (84)
T ss_dssp             SSCSCCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECC
T ss_pred             cccccccCCEEEECC-CCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcc
Confidence            355789999999963 578999999999999999999999999999999999999999999999999999998633

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}

Probab=99.97  E-value=5.7e-31  Score=177.75  Aligned_cols=80  Identities=38%  Similarity=0.696  Sum_probs=68.2

Q ss_pred             CCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCc
Q psy6084          11 TLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR   90 (106)
Q Consensus        11 ~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~   90 (106)
                      ..+..|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-..+.
T Consensus         6 ~~~~~~~vG~rV~V~g-~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~~   84 (96)
T 2z0w_A            6 SGEGELRLGERVLVVG-QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSL   84 (96)
T ss_dssp             -----CCTTCCCCCCC-CCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC--
T ss_pred             CCcccCCCCCEEEECC-CcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccchh
Confidence            4456799999999963 578999999999999999999999999999999999999999999999999999999765554


Q ss_pred             c
Q psy6084          91 A   91 (106)
Q Consensus        91 ~   91 (106)
                      .
T Consensus        85 ~   85 (96)
T 2z0w_A           85 D   85 (96)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=4.5e-30  Score=177.60  Aligned_cols=75  Identities=44%  Similarity=0.726  Sum_probs=69.8

Q ss_pred             CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      .+..|+|||||.|...+..|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-
T Consensus        30 ~~~~l~VG~RV~V~~~g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~  104 (112)
T 2coy_A           30 SARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF  104 (112)
T ss_dssp             SCCCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEEC
T ss_pred             ccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEc
Confidence            345799999999975468999999999999999999999999999999999999999999999999999999863

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=2e-30  Score=174.81  Aligned_cols=77  Identities=44%  Similarity=0.825  Sum_probs=70.3

Q ss_pred             CCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCc
Q psy6084          13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGR   90 (106)
Q Consensus        13 ~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~   90 (106)
                      ...|+|||||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.......
T Consensus        14 ~~~~~vG~RV~V~g-~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~~~~~   90 (95)
T 2cp0_A           14 ALGLRLGDRVLLDG-QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVDAS   90 (95)
T ss_dssp             HHTCCTTCEEEETT-TEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEECSCCC
T ss_pred             ccCCCCCCEEEECC-CCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecCCCCC
Confidence            45699999999973 578999999999999999999999999999999999999999999999999999999754433

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A

Probab=99.96  E-value=2.4e-30  Score=174.36  Aligned_cols=76  Identities=39%  Similarity=0.744  Sum_probs=70.2

Q ss_pred             CCCCcccccCeEEEe-CC--CceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          11 TLPEWVCLGESVLIR-PY--NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        11 ~~~~~l~vG~rV~v~-~~--~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      +.+..|+||+||.|. +.  ..+|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus         7 ~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~g   85 (95)
T 1lpl_A            7 EAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVG   85 (95)
T ss_dssp             HHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEES
T ss_pred             hhhhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceEC
Confidence            345678999999997 33  58999999999999999999999999999999999999999999999999999999875

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.96  E-value=7.9e-30  Score=173.87  Aligned_cols=78  Identities=38%  Similarity=0.726  Sum_probs=71.2

Q ss_pred             CCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCCcc
Q psy6084          13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRGRA   91 (106)
Q Consensus        13 ~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~~~   91 (106)
                      .+.|+|||||.|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.....+.+
T Consensus        22 ~~~~~vG~RV~V~g-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~   99 (102)
T 1whj_A           22 SLGLKLGDRVVIAG-QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP   99 (102)
T ss_dssp             HHTCCTTCEEEETT-TEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred             hhcCcCCCEEEECC-CCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence            45699999999963 5789999999999999999999999999999999999999999999999999999997655543

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A

Probab=99.96  E-value=9.8e-30  Score=169.98  Aligned_cols=71  Identities=46%  Similarity=0.908  Sum_probs=67.0

Q ss_pred             cccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          15 WVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        15 ~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      +|+|||||.|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus         1 ~l~vG~rV~V~g-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~   71 (90)
T 2e3h_A            1 ELKIGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKI   71 (90)
T ss_dssp             CCCTTCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEET
T ss_pred             CCcCCCEEEECC-CCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEEC
Confidence            478999999963 57899999999999999999999999999999999999999999999999999999975

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=4.3e-29  Score=174.88  Aligned_cols=77  Identities=40%  Similarity=0.700  Sum_probs=70.6

Q ss_pred             CCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084          10 VTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR   87 (106)
Q Consensus        10 ~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~   87 (106)
                      .+....|+||+||.|.. ...|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..-.
T Consensus        26 ~~~~~~l~VG~RV~V~g-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~~~p  102 (122)
T 2coz_A           26 ADELFDFHIGDRVLIGN-VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIP  102 (122)
T ss_dssp             CCSCSSCCTTEEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECCC
T ss_pred             ccccccCcCCCEEEECC-CcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCccCC
Confidence            45556899999999973 589999999999999999999999999999999999999999999999999999998533

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=5.4e-29  Score=177.95  Aligned_cols=77  Identities=43%  Similarity=0.825  Sum_probs=70.8

Q ss_pred             CCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084          10 VTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR   87 (106)
Q Consensus        10 ~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~   87 (106)
                      .+..+.|+|||||+|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|....
T Consensus        59 ~~~~~~l~VG~RV~V~G-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~~  135 (141)
T 2cp5_A           59 EEFVDDFRVGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKV  135 (141)
T ss_dssp             CCCCCCCCTTCEEEETT-SCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESSC
T ss_pred             hhhhhcCcCCCEEEECC-CcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeecc
Confidence            35567799999999973 579999999999999999999999999999999999999999999999999999998643

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.96  E-value=1.9e-29  Score=174.61  Aligned_cols=75  Identities=39%  Similarity=0.748  Sum_probs=68.9

Q ss_pred             CCCcccccCeEEEeC-C--CceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          12 LPEWVCLGESVLIRP-Y--NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~-~--~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      .+..|+||+||.|.. .  ...|||||+|++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|...
T Consensus        29 ~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~g  106 (113)
T 1whg_A           29 QASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVG  106 (113)
T ss_dssp             HHTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEE
T ss_pred             hhhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHHeEEC
Confidence            345799999999962 2  58999999999999999999999999999999999999999999999999999999863

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=3.1e-28  Score=178.71  Aligned_cols=73  Identities=45%  Similarity=0.880  Sum_probs=68.8

Q ss_pred             CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084          12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      .+..|+|||||+|.. ...|||||+|++++..|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..
T Consensus        35 ~~~~l~VG~RV~V~g-~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~  107 (172)
T 2cp6_A           35 GERELKIGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK  107 (172)
T ss_dssp             CSSCCCSSCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEE
T ss_pred             CCccCccCCEEEECC-CceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEE
Confidence            456799999999963 5889999999999999999999999999999999999999999999999999999986

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=7.8e-28  Score=161.28  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=68.3

Q ss_pred             CCCCcccccCeEEEeCCC--ceEEEEEEeecCCC--CCeEEEEEEcCCCCCCCcEECCEEee-EeCCCCeeEEecCCccc
Q psy6084          11 TLPEWVCLGESVLIRPYN--SSGVIAYIGPTEFA--AGTWVGVELDAPTGKNDGTVQGTRYF-ESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        11 ~~~~~l~vG~rV~v~~~~--~~GtVRyiG~~~~~--~g~~vGVElde~~Gk~dGt~~G~rYF-~c~p~~GiFv~~~kv~~   85 (106)
                      +.+..|+||+||+|....  .+|||||+|+++..  .++|+|||||||.|||||+++|+||| .|.++||+||++.++.+
T Consensus         5 ~~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~~~   84 (92)
T 1whm_A            5 SSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIP   84 (92)
T ss_dssp             CCSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEE
T ss_pred             ccccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccCcc
Confidence            345578999999997433  78999999999864  68999999999999999999999999 89999999999999976


Q ss_pred             cC
Q psy6084          86 DR   87 (106)
Q Consensus        86 ~~   87 (106)
                      +.
T Consensus        85 e~   86 (92)
T 1whm_A           85 ES   86 (92)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d2cowa1	88	b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Hu	8e-28
d1whka_	91	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	1e-27
d2hqha1	72	b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapien	4e-27
d2coza1	109	b.34.10.1 (A:8-116) Centrosome-associated protein	4e-26
d2e3ia1	71	b.34.10.1 (A:58-128) Restin {Human (Homo sapiens)	9e-26
d2e3ha1	71	b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapien	9e-26
d1tova_	98	b.34.10.1 (A:) Cytoskeleton-associated protein F53	1e-25
d2cp0a1	83	b.34.10.1 (A:7-89) CLIP170-related 59kda protein C	4e-25
d1whja_	102	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	6e-25
d1whha_	102	b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR	6e-25
d1ixda_	104	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	6e-24
d1whga_	113	b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1	3e-23
d2cp6a1	160	b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [	1e-22
d1whma_	92	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	2e-20
d1whla_	95	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	3e-19

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (236), Expect = 8e-28
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESR 71
          +PEW+  GE V +   + +GV+ Y+GP +F  GTWVGVELD P+GKNDG++ G +YF   
Sbjct: 14 VPEWLREGEFVTV-GAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN 72

Query: 72 PKHGIFVRADKL 83
          P +G+ VR  ++
Sbjct: 73 PGYGLLVRPSRV 84

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.8 bits (236), Expect = 1e-27
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRP 72
             +  G  VL+   N    + Y+GPT+FA+G W+G+EL +  GKNDG V   RYF  +P
Sbjct: 10 TVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKP 69

Query: 73 KHGIFVRADKL 83
           +G+ VR  ++
Sbjct: 70 NYGVLVRPSRV 80

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (231), Expect = 4e-27
 Identities = 33/66 (50%), Positives = 40/66 (60%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G  V +      G +AY+G T FA G WVGV LD   GKNDGTVQG +YF     HGIF
Sbjct: 4  VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 63

Query: 78 VRADKL 83
          VR  ++
Sbjct: 64 VRQSQI 69

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (226), Expect = 4e-26
 Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VLI      G++ + G T FA G W GVELD P G N+GT  G  YFE + KHGIF
Sbjct: 27 IGDRVLIGNVQP-GILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIF 85

Query: 78 VRADKL 83
              K+
Sbjct: 86 APPQKI 91

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (222), Expect = 9e-26
 Identities = 33/66 (50%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +GE V +   N  G I ++G T+FA G W G+ LD P GKNDG+V G RYF+  P  GIF
Sbjct: 3  VGERVWVNG-NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIF 61

Query: 78 VRADKL 83
           R  KL
Sbjct: 62 TRPSKL 67

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (222), Expect = 9e-26
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VL+    + GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 3  IGDRVLVGGTKA-GVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 61

Query: 78 VRADKLIQ 85
              K+ +
Sbjct: 62 APVHKVTK 69

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 89.9 bits (223), Expect = 1e-25
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)

Query: 13 PEWVCLGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE 69
           + + +G    +         G +AY+G T+F  G WVGV+ D P GKNDG+V G RYF+
Sbjct: 12 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFD 71

Query: 70 SRPKHGIFVRADKL 83
            PK+G FVR   +
Sbjct: 72 CDPKYGGFVRPVDV 85

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (218), Expect = 4e-25
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          LG+ VL+    + G + + G TEFA+G WVGVELD P GKNDG+V G RYF   PK G+F
Sbjct: 13 LGDRVLLDGQKT-GTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLF 71

Query: 78 VRADKL 83
              K+
Sbjct: 72 ASVSKI 77

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.0 bits (218), Expect = 6e-25
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          LG+ V+I      G + + G TEFA+G W G+ELD P GKN+G+V   +YF+  PK+GIF
Sbjct: 27 LGDRVVIAGQKV-GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIF 85

Query: 78 VRADKLI 84
              K+ 
Sbjct: 86 APLSKIS 92

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (218), Expect = 6e-25
 Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VL+      G++ + G T+FA G W G+ELD PTGK+DG+V G RYF   P+HG+F
Sbjct: 28 VGDQVLVAGQKQ-GIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVF 86

Query: 78 VRADKL 83
            A ++
Sbjct: 87 APASRI 92

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (212), Expect = 6e-24
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 31 GVIAYIGPTEFAAGTWVGVEL-DAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR 88
          GVI +IG          G+EL D   G  DGT +GTRYF    K  +FV+      D R
Sbjct: 34 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR 92

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (208), Expect = 3e-23
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 18  LGESVLIRPYNSS---GVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKH 74
           +G    +R  + S   G + Y+G T+F  G WVGV  D P GKNDG+V G RYFE + K+
Sbjct: 35  VGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKY 94

Query: 75  GIFVRADKL 83
           G FV+   +
Sbjct: 95  GAFVKPSAV 103

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 1e-22
 Identities = 33/67 (49%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 18 LGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIF 77
          +G+ VL+    + GV+ ++G T+FA G W GVELD P GKNDG V GTRYF+ +PK+G+F
Sbjct: 34 IGDRVLVGGTKA-GVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLF 92

Query: 78 VRADKLI 84
              K+ 
Sbjct: 93 APVHKVT 99

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (188), Expect = 2e-20
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 16 VCLGESVLIRPYNSS--GVIAYIG--PTEFAAGTWVGVELDAPTGKNDGTVQGTRYFE-S 70
          + +   V ++   +   G + +    P + + G +VGV++D P G  DG   G +    +
Sbjct: 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFA 69

Query: 71 RPKHGIFVRADKLIQDRRG 89
            +  I +  + +I +  G
Sbjct: 70 CVESTILLHINDIIPESSG 88

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 3e-19
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 26 PYNSSGVIAYIGPTEF---AAGTWVGVELD---APTGKNDGTVQGTRYFESRPKHGIFVR 79
               GV+ + GP       +G + GVEL       G  DG  QG + F+     G+FV 
Sbjct: 22 EEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVA 81

Query: 80 ADKL 83
           DKL
Sbjct: 82 LDKL 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d2hqha1	72	Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2cowa1	88	Kinesin-like protein kif13b {Human (Homo sapiens)	99.97
d2e3ha1	71	CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1whka_	91	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.97
d2e3ia1	71	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2cp0a1	83	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.97
d1whha_	102	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.97
d1whja_	102	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.97
d2coza1	109	Centrosome-associated protein 350 {Human (Homo sap	99.97
d1ixda_	104	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.97
d2cp6a1	160	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1tova_	98	Cytoskeleton-associated protein F53F4.3 {Caenorhab	99.96
d1whga_	113	Tubulin-specific chaperone B (SKAP1) {Mouse (Mus m	99.96
d1whla_	95	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.95
d1whma_	92	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.95

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-32  Score=173.74  Aligned_cols=70  Identities=47%  Similarity=0.830  Sum_probs=66.5

Q ss_pred             ccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084          16 VCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        16 l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      |+||+||.|......|||||+|++++.++.|+|||||+|.|+|||+++|+|||+|+|+||+||++++|.+
T Consensus         2 l~vG~rV~v~~~~~~G~vryvG~~~~~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~G~Fv~~~~v~v   71 (72)
T d2hqha1           2 LRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV   71 (72)
T ss_dssp             CSTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTTEEEECGGGEEE
T ss_pred             cccCCEEEEcCCCEEEEEEEecccCCCCCcEEEEEEccCCCCCCCEECCEEEEecCCCcEEEechHHEEE
Confidence            7899999997656889999999999999999999999999999999999999999999999999999864

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7e-32  Score=178.22  Aligned_cols=79  Identities=43%  Similarity=0.913  Sum_probs=72.6

Q ss_pred             CCCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084           7 FDDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus         7 ~~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      ....++|++|+|||||.|. ....|+|||+|++++..++|+|||||+|.|+|||+++|+|||+|+|+||+||++++|.+.
T Consensus         9 e~~~~~~~~l~vG~rV~V~-~~~~G~vryiG~~~~~~g~~vGVeld~p~GkndG~~~G~~YF~c~~~~G~Fv~~~~v~~~   87 (88)
T d2cowa1           9 EEADEVPEWLREGEFVTVG-AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA   87 (88)
T ss_dssp             CCCCCCCSSCCTTCEEECS-SSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEEC
T ss_pred             chhhcccccCcccCEEEEC-CCcEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEecHHHcEEC
Confidence            3456778899999999996 457899999999999999999999999999999999999999999999999999999864

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=171.20  Aligned_cols=69  Identities=48%  Similarity=0.962  Sum_probs=65.3

Q ss_pred             ccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084          16 VCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        16 l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      |+|||||.|. ....|||||+|++++.+++|+|||||+|.|+|||+++|+|||+|+|+||+||++++|..
T Consensus         1 l~vG~rV~v~-~~~~G~vryvG~~~~~~g~~~GVeld~~~Gk~dG~~~G~~YF~c~~~~G~Fv~~~kv~~   69 (71)
T d2e3ha1           1 LKIGDRVLVG-GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK   69 (71)
T ss_dssp             CCTTCEEEET-TTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEE
T ss_pred             CccCCEEEEC-CCceEEEEEecccCCCCCCEEEEEECCCCCCCCCEECCEEEEecCCCCEEEeCHHHcEE
Confidence            6899999996 46789999999999999999999999999999999999999999999999999999864

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-31  Score=178.24  Aligned_cols=79  Identities=35%  Similarity=0.699  Sum_probs=73.0

Q ss_pred             CCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084           8 DDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus         8 ~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      ++.+.+..|++|+||+|..++..|||||+|++++.+++|+|||||+|.|+|||+++|+|||+|+|+||+||++++|...
T Consensus         5 ss~~~~~~l~vG~rV~v~~~~~~G~vryvG~~~~~~g~~vGVElD~p~GkndGtv~G~~YF~C~~~~G~Fv~~~~v~~~   83 (91)
T d1whka_           5 SSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYR   83 (91)
T ss_dssp             SSSCCCCCCCSSCEEEESSSCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECC
T ss_pred             cCCCCCcccccCCEEEEcCCCeEEEEEEeeecCCCCCCEEEEEeCCCCCCCCCEECCEEEeecCCCceEEeCHHHeEEc
Confidence            3445678899999999986678999999999999999999999999999999999999999999999999999999863

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-31  Score=170.71  Aligned_cols=69  Identities=48%  Similarity=0.937  Sum_probs=65.2

Q ss_pred             ccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084          16 VCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        16 l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      ++|||||.|. .+..|||||+|++++.++.|+|||||+|.|+|||+++|+|||+|+|+||+||++++|..
T Consensus         1 f~vG~rV~v~-~~~~G~vryvG~~~~~~g~~vGVEld~p~Gk~dGt~~G~~YF~c~~~~G~Fv~~~~v~k   69 (71)
T d2e3ia1           1 FRVGERVWVN-GNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR   69 (71)
T ss_dssp             CCTTCEEEET-TTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEES
T ss_pred             CccCCEEEEC-CCcEEEEEEEeecCCCCCcEEEEEECCCCCCCCCEECCEEEEecCCCcEEEeCHHHEEe
Confidence            5799999997 36789999999999999999999999999999999999999999999999999999975

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-31  Score=174.45  Aligned_cols=73  Identities=47%  Similarity=0.868  Sum_probs=68.2

Q ss_pred             CCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        13 ~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      +..|+|||||.|. ....|||||+|++++.++.|+|||||+|.|+|||+++|+|||+|+|+||+||++++|...
T Consensus         8 ~~~l~vG~rV~v~-~~~~G~vryvG~~~~~~g~~vGVElD~p~GkndGt~~G~rYF~C~~~~G~Fv~~~~v~~~   80 (83)
T d2cp0a1           8 ALGLRLGDRVLLD-GQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA   80 (83)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred             ecCCccCCEEEEC-CCceEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEEeecCCCceEEcCHHHcccc
Confidence            4578999999996 357899999999999999999999999999999999999999999999999999999864

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.7e-31  Score=177.24  Aligned_cols=81  Identities=38%  Similarity=0.748  Sum_probs=72.9

Q ss_pred             CCCCCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccC
Q psy6084           8 DDVTLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDR   87 (106)
Q Consensus         8 ~~~~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~   87 (106)
                      .+......|+|||||.|. ....|||||+|++++..++|+|||||+|.|+|||+|+|+|||+|+|+||+||++++|....
T Consensus        18 ~~~~~~~~~~vGdrV~v~-~~~~G~vryvG~~~~~~g~~~GVEld~p~GkndGt~~G~rYF~C~p~~GiFv~~~~v~~~~   96 (102)
T d1whha_          18 LQQREGAKAEVGDQVLVA-GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIG   96 (102)
T ss_dssp             SSCSSCCSSCTTSEEEET-TTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECC
T ss_pred             ccccccCcCcccCEEEEC-CCceEEEEEecccCCCCCeEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEeCHHHceECC
Confidence            344455679999999996 4678999999999999999999999999999999999999999999999999999999755


Q ss_pred             CC
Q psy6084          88 RG   89 (106)
Q Consensus        88 ~~   89 (106)
                      ++
T Consensus        97 d~   98 (102)
T d1whha_          97 SG   98 (102)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.2e-30  Score=174.97  Aligned_cols=73  Identities=41%  Similarity=0.755  Sum_probs=67.8

Q ss_pred             CCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          13 PEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        13 ~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      ...|+|||||.|. ....|||||+|++++..++|+|||||+|.|+|||+++|+|||+|+|+||+||++++|...
T Consensus        22 ~~~l~vG~rV~v~-~~~~G~VryvG~~~~~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~GiFv~~~~v~~~   94 (102)
T d1whja_          22 SLGLKLGDRVVIA-GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKL   94 (102)
T ss_dssp             HHTCCTTCEEEET-TTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEES
T ss_pred             ccCCccCCEEEEC-CCCeEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEEeecCCCcEEEecHHHeeEc
Confidence            3458899999996 367899999999999999999999999999999999999999999999999999999753

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-30  Score=177.02  Aligned_cols=77  Identities=40%  Similarity=0.699  Sum_probs=69.9

Q ss_pred             CCCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccccCC
Q psy6084          11 TLPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRR   88 (106)
Q Consensus        11 ~~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~   88 (106)
                      .....|+||+||.|. ....|||||+|++++.+|+|+|||||+|.|+|||+++|+|||+|+|+||+||++++|.....
T Consensus        20 ~~~~~~~vG~rV~V~-~~~~G~vryiG~~~~~~g~~vGVElDep~GkndGtv~G~~YF~C~~~~GiFv~~~~v~~~~~   96 (109)
T d2coza1          20 DELFDFHIGDRVLIG-NVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPE   96 (109)
T ss_dssp             CSCSSCCTTEEEEET-TTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECCCT
T ss_pred             CccccCccCCEEEEC-CCeeEEEEEEeecCCCCCcEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHcEecCC
Confidence            444578999999996 35789999999999999999999999999999999999999999999999999999986433

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-30  Score=174.40  Aligned_cols=83  Identities=28%  Similarity=0.403  Sum_probs=74.0

Q ss_pred             CCCcccccCeEEEeCC-CceEEEEEEeecCCCCCeEEEEEEcC-CCCCCCcEECCEEeeEeCCCCeeEEecCCccccCCC
Q psy6084          12 LPEWVCLGESVLIRPY-NSSGVIAYIGPTEFAAGTWVGVELDA-PTGKNDGTVQGTRYFESRPKHGIFVRADKLIQDRRG   89 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~-~~~GtVRyiG~~~~~~g~~vGVElde-~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~~~~   89 (106)
                      -...|+|||||.|... .++|||||+|++++..++|+|||||+ +.|+|||+++|+|||+|+++||+||++++|.+++++
T Consensus        14 ~~~~l~vG~rV~V~~~~~~~G~vryvG~~~~~~g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~~G~Fv~~~~~~~~~~f   93 (104)
T d1ixda_          14 NSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRF   93 (104)
T ss_dssp             SSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTT
T ss_pred             CCCCCccCCEEEECCCCCcEEEEEEEecCCCCCCcEEEEEeCCCCCCCcCCEECCEEEEecCCCcEEEechHHCcccccc
Confidence            4556999999999743 36799999999999999999999975 579999999999999999999999999999999988


Q ss_pred             ccccC
Q psy6084          90 RAMRS   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                      ..+..
T Consensus        94 ~~~~p   98 (104)
T d1ixda_          94 ASLQP   98 (104)
T ss_dssp             CCCCS
T ss_pred             cCCCC
Confidence            77643

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-30  Score=184.92  Aligned_cols=73  Identities=45%  Similarity=0.880  Sum_probs=68.3

Q ss_pred             CCCcccccCeEEEeCCCceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084          12 LPEWVCLGESVLIRPYNSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~~~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      ...+|+|||||.|.+ +..|+|||+|++++..|.|+|||||++.|||||+++|++||+|+|+||+||++++|..
T Consensus        28 ~~~~~~vGdrV~v~g-~~~G~vr~iG~~~~~~G~wvGVELd~p~GKNdGsv~G~~YF~c~~~~G~Fv~~s~v~~  100 (160)
T d2cp6a1          28 GERELKIGDRVLVGG-TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTK  100 (160)
T ss_dssp             CSSCCCSSCEEEETT-TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEE
T ss_pred             cCCCCccCCEEEECC-CCeEEEEEecccCCCCCCEEEEEeCCCCCCCCCEECCEEeeecCCCceEEecHhHceE
Confidence            345799999999973 6789999999999999999999999999999999999999999999999999999986

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=7.4e-31  Score=176.23  Aligned_cols=77  Identities=39%  Similarity=0.727  Sum_probs=70.0

Q ss_pred             CCCCCCcccccCeEEEeCC---CceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCccc
Q psy6084           9 DVTLPEWVCLGESVLIRPY---NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQ   85 (106)
Q Consensus         9 ~~~~~~~l~vG~rV~v~~~---~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~   85 (106)
                      +.+.+..|+||+||+|...   ..+|||||+|++++..++|+|||||+|.|+|||+++|+|||+|+|+||+||++++|..
T Consensus         8 ~~~~~~~l~VG~RV~V~~~~~~~~~G~vryiG~~~~~~g~~vGVelD~p~G~~dG~~~g~~YF~c~~~~G~Fv~~~~v~~   87 (98)
T d1tova_           8 NEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKV   87 (98)
T ss_dssp             HHHHHTTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEE
T ss_pred             hhhhccCCccCCEEEEecCCCCceeEEEEEeeecCCCCceEEEEEeCCCCCCcCCEECCEEEEEcCCCCEEEeChhheEE
Confidence            3455678999999999732   2579999999999999999999999999999999999999999999999999999985

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.6e-29  Score=172.36  Aligned_cols=74  Identities=39%  Similarity=0.764  Sum_probs=67.7

Q ss_pred             CCcccccCeEEEeCC---CceEEEEEEeecCCCCCeEEEEEEcCCCCCCCcEECCEEeeEeCCCCeeEEecCCcccc
Q psy6084          13 PEWVCLGESVLIRPY---NSSGVIAYIGPTEFAAGTWVGVELDAPTGKNDGTVQGTRYFESRPKHGIFVRADKLIQD   86 (106)
Q Consensus        13 ~~~l~vG~rV~v~~~---~~~GtVRyiG~~~~~~g~~vGVElde~~Gk~dGt~~G~rYF~c~p~~GiFv~~~kv~~~   86 (106)
                      ...|+|||||+|...   ..+|||||+|++++..++|+|||||+|.|+|||+|+|+|||+|+|+||+||++++|...
T Consensus        30 ~~~~~VG~rv~V~~~~~~~r~G~vryvG~~~~~~g~~~GVelD~p~Gk~dG~~~G~rYF~c~~~~G~fv~~~~v~~~  106 (113)
T d1whga_          30 ASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVG  106 (113)
T ss_dssp             HTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEE
T ss_pred             cccCcCCCEEEEEcCCCCceEEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHeEEC
Confidence            346899999999742   25799999999999999999999999999999999999999999999999999999864

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=161.56  Aligned_cols=76  Identities=30%  Similarity=0.429  Sum_probs=65.1

Q ss_pred             CCCcccccCeEEEeC----CCceEEEEEEeecCCC---CCeEEEEEEcC---CCCCCCcEECCEEeeEeCCCCeeEEecC
Q psy6084          12 LPEWVCLGESVLIRP----YNSSGVIAYIGPTEFA---AGTWVGVELDA---PTGKNDGTVQGTRYFESRPKHGIFVRAD   81 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~----~~~~GtVRyiG~~~~~---~g~~vGVElde---~~Gk~dGt~~G~rYF~c~p~~GiFv~~~   81 (106)
                      -...|+||+||+|..    ..+.|+|||+|++++.   .|+|+||||||   +.|+|||+++|+|||+|+|+||+||+++
T Consensus         4 g~~~l~vGs~V~V~~~~g~~~~~G~vryvG~~~~~~~~~G~~~GVeldd~~~~~Gk~dGt~~G~rYF~C~~~~GiFv~~~   83 (95)
T d1whla_           4 GSSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD   83 (95)
T ss_dssp             SCCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred             CcCCCccCCEEEEEecCCCCceeEEEEEeccCCCCCCCCceEEEEEecCCcCCCCccCCEECCEEEEecCCCcEEEecHH
Confidence            345689999999963    2357999999999875   38999999976   3589999999999999999999999999


Q ss_pred             CccccC
Q psy6084          82 KLIQDR   87 (106)
Q Consensus        82 kv~~~~   87 (106)
                      +|.+-.
T Consensus        84 kv~~~~   89 (95)
T d1whla_          84 KLELIE   89 (95)
T ss_dssp             GEEECC
T ss_pred             HeEEcc
Confidence            998643

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=158.77  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=68.8

Q ss_pred             CCCcccccCeEEEeC--CCceEEEEEEeecCC--CCCeEEEEEEcCCCCCCCcEECCEEeeEeC-CCCeeEEecCCcccc
Q psy6084          12 LPEWVCLGESVLIRP--YNSSGVIAYIGPTEF--AAGTWVGVELDAPTGKNDGTVQGTRYFESR-PKHGIFVRADKLIQD   86 (106)
Q Consensus        12 ~~~~l~vG~rV~v~~--~~~~GtVRyiG~~~~--~~g~~vGVElde~~Gk~dGt~~G~rYF~c~-p~~GiFv~~~kv~~~   86 (106)
                      ....|+||+||+|..  ...+|||||+|.++.  ..|.|+|||||+|.|+|||+++|+|||+|+ ++||+||+++++.++
T Consensus         6 s~~~l~vg~RV~V~~~~~~~~GtVryiG~lp~~~~~g~wvGVElDep~Gk~dGt~~G~r~f~~~~~~~g~fv~~~~~~~~   85 (92)
T d1whma_           6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPE   85 (92)
T ss_dssp             CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEEC
T ss_pred             cCCCceeCCEEEEecCCCceEEEEEEeCCCCCcCCCceEEEEEeCCCCCCCCCeECCEEEEEecCCCcEEEEehhhceEc
Confidence            344689999999963  247899999999874  578999999999999999999999999999 589999999999987


Q ss_pred             CCCc
Q psy6084          87 RRGR   90 (106)
Q Consensus        87 ~~~~   90 (106)
                      .+..
T Consensus        86 ~s~p   89 (92)
T d1whma_          86 SSGP   89 (92)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7543