Psyllid ID: psy6089

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD
cccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccEEEEccccEEEEEEcccccHHHHHHHHHHcccccccccEEEEccccccccEEEcEEEEEEEccEEEEEcccccHHHHHHHHHHHccccccEEEEEccccEEEEEEccccHHHHHHHccccccccccccEEEEEEEEEccEEEEEEccccccEEEEEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEcc
ccccHEEcccHHHHHHHHHHHccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEcccccccccccHHHHHHHHHHHHHccEEEcccccEEEEEcccHHHHHHHHHHHHcccccccccEEEEccccccccccccEEEEEEccccEEEEEccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHccHHHHHHHHHHcccccccccccccEEEEEEcEEEEEEEEcccccccEEEEEcHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccHcccEEEEEcc
mngnslqgaGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVgstyrvgdprpemppgtffkpkffDFMEEEYRACFEgvgiidmssfskikitcsdESLVDWLQQLcsndvnipvggishtgmqnerggyendcILVRETetsyfmvsptsqqTRVFEWMknhlptkhyitlsdvtskYTVINVVGPKAKQLLSELCdedinlhpfsykrtdigyasdvklmgfthtgepgyclyipseyaLHVYQKIMTLgkdynardvgMFTQRYMRIEKFIPFwaedlnsvttpfesgsayrvkld
mngnslqgagGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIRevvgstyrvgdprpemppgtfFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGIShtgmqnerggYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNsvttpfesgsayrvkld
MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD
**********GIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVG********GTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTT*************
*NGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD
**********GIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD
**GNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRPEMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
Q8NCN5 879 Pyruvate dehydrogenase ph yes N/A 1.0 0.356 0.401 7e-77
O46504 878 Pyruvate dehydrogenase ph yes N/A 1.0 0.356 0.398 2e-76
Q7TSQ8 878 Pyruvate dehydrogenase ph yes N/A 0.952 0.339 0.401 8e-73
Q9DBT9 869 Dimethylglycine dehydroge no N/A 0.958 0.345 0.247 1e-26
Q63342 857 Dimethylglycine dehydroge no N/A 0.958 0.350 0.245 3e-26
Q8RCV9 374 Aminomethyltransferase OS yes N/A 0.750 0.628 0.279 7e-25
A7GSN8 366 Aminomethyltransferase OS yes N/A 0.734 0.628 0.270 1e-24
C1ERV0 366 Aminomethyltransferase OS yes N/A 0.734 0.628 0.279 4e-24
A0RIL1 366 Aminomethyltransferase OS yes N/A 0.734 0.628 0.279 4e-24
Q6HDT6 366 Aminomethyltransferase OS yes N/A 0.734 0.628 0.279 4e-24
>sp|Q8NCN5|PDPR_HUMAN Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Homo sapiens GN=PDPR PE=1 SV=2 Back     alignment and function desciption
 Score =  287 bits (735), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 208/361 (57%), Gaps = 48/361 (13%)

Query: 1   MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYR 60
           MN   L   GG G+ +AEWM HG  ++ +   D++RF  L ++R +L+ R+ EV+   Y 
Sbjct: 384 MNSAGLSFGGGAGKYLAEWMVHGYPSENVWELDLKRFGALQSSRTFLRHRVMEVMPLMYD 443

Query: 61  VGDPRPE-----------------------------------MPPG----------TFFK 75
           +  PR +                                   +PP           TF+K
Sbjct: 444 LKVPRWDFQTGRQLRTSPLYDRLDAQGARWMEKHGFERPKYFVPPDKDLLALEQSKTFYK 503

Query: 76  PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHT 135
           P +FD +E E + C E V +IDMSSF+K +IT + +  ++ LQ L SND+++PVG I HT
Sbjct: 504 PDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALEVLQYLFSNDLDVPVGHIVHT 563

Query: 136 GMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTV 195
           GM NE GGYENDC + R  + S+FM+SPT QQ   + W+K H+P    + L DVT KYT 
Sbjct: 564 GMLNEGGGYENDCSIARLNKRSFFMISPTDQQVHCWAWLKKHMPKDSNLLLEDVTWKYTA 623

Query: 196 INVVGPKAKQLLSELCDEDINLHPFSY---KRTDIGYASDVKLMGFTHTGEPGYCLYIPS 252
           +N++GP+A  +LSEL    +    F     K   +GYA+ +++M  THTGEPG+ LYIP 
Sbjct: 624 LNLIGPRAVDVLSELSYAPMTPDHFPSLFCKEMSVGYANGIRVMSMTHTGEPGFMLYIPI 683

Query: 253 EYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKL 312
           EYALHVY ++M++G+ Y  R+ G +  R +RIEKF  FW +D+N++TTP E G   RVKL
Sbjct: 684 EYALHVYNEVMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDINNLTTPLECGRESRVKL 743

Query: 313 D 313
           +
Sbjct: 744 E 744
Decreases the sensitivity of PDP1 to magnesium ions, and this inhibition is reversed by the polyamine spermine.
Homo sapiens (taxid: 9606)
>sp|O46504|PDPR_BOVIN Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Bos taurus GN=PDPR PE=1 SV=1 Back     alignment and function description
>sp|Q7TSQ8|PDPR_MOUSE Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial OS=Mus musculus GN=Pdpr PE=2 SV=1 Back     alignment and function description
>sp|Q9DBT9|M2GD_MOUSE Dimethylglycine dehydrogenase, mitochondrial OS=Mus musculus GN=Dmgdh PE=1 SV=1 Back     alignment and function description
>sp|Q63342|M2GD_RAT Dimethylglycine dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dmgdh PE=1 SV=1 Back     alignment and function description
>sp|Q8RCV9|GCST_THETN Aminomethyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|A7GSN8|GCST_BACCN Aminomethyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|C1ERV0|GCST_BACC3 Aminomethyltransferase OS=Bacillus cereus (strain 03BB102) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|A0RIL1|GCST_BACAH Aminomethyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q6HDT6|GCST_BACHK Aminomethyltransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=gcvT PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
307184995 919 Pyruvate dehydrogenase phosphatase regul 1.0 0.340 0.617 1e-130
383865705 916 PREDICTED: pyruvate dehydrogenase phosph 1.0 0.341 0.628 1e-129
270014463 877 hypothetical protein TcasGA2_TC001737 [T 1.0 0.356 0.608 1e-128
380021100 876 PREDICTED: pyruvate dehydrogenase phosph 1.0 0.357 0.612 1e-127
345491156 901 PREDICTED: pyruvate dehydrogenase phosph 1.0 0.347 0.598 1e-126
328722668 889 PREDICTED: pyruvate dehydrogenase phosph 1.0 0.352 0.608 1e-124
328722670 899 PREDICTED: pyruvate dehydrogenase phosph 1.0 0.348 0.592 1e-122
347967411 899 AGAP002217-PA [Anopheles gambiae str. PE 1.0 0.348 0.554 1e-116
312370781 891 hypothetical protein AND_23055 [Anophele 1.0 0.351 0.536 1e-114
157131387 850 nad dehydrogenase [Aedes aegypti] gi|108 1.0 0.368 0.528 1e-111
>gi|307184995|gb|EFN71224.1| Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/361 (61%), Positives = 268/361 (74%), Gaps = 48/361 (13%)

Query: 1   MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVG---- 56
           MNGNSLQGAGGIG+ +AE + +GE+ QE+L F+VQRFLDLHNN+QYLQQR++EVVG    
Sbjct: 410 MNGNSLQGAGGIGKEIAESIINGESKQEVLPFNVQRFLDLHNNKQYLQQRMKEVVGRNYA 469

Query: 57  --------------------------------------------STYRVGDPRPEMPPGT 72
                                                       STY+ G  +P MP G+
Sbjct: 470 ILYPLQSEYKYARKLRCSPLYSVLEERGAVFGIKMAYERPLYFDSTYKRGQKKPIMPKGS 529

Query: 73  FFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGGI 132
           F+KPKFFDFM+EE++AC EGVGIIDMSSFSKI+I  S E +V++LQQLCSND NIPVGGI
Sbjct: 530 FYKPKFFDFMKEEFQACREGVGIIDMSSFSKIEIKSSHEEVVEYLQQLCSNDANIPVGGI 589

Query: 133 SHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSK 192
            HTGMQNE+GGYENDCILVR++E SYFMVSPT QQTR+++WM  HLP  H + L+DVTSK
Sbjct: 590 VHTGMQNEKGGYENDCILVRQSENSYFMVSPTLQQTRIYQWMSRHLPADHLVGLNDVTSK 649

Query: 193 YTVINVVGPKAKQLLSELCDEDINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPS 252
           YTVIN+VGPKA +LLSEL + DINL PF+YK  +I YASDV +M FTHTGE GYCLYIPS
Sbjct: 650 YTVINIVGPKATELLSELSNSDINLSPFTYKTVNIAYASDVMVMAFTHTGESGYCLYIPS 709

Query: 253 EYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKL 312
           EYALHVY  +M +GKDY ARDVG+ TQR+MRIE+FIPFWAE+L    TP+E+G+ YRVKL
Sbjct: 710 EYALHVYSTLMAIGKDYGARDVGVLTQRFMRIERFIPFWAEELTPYVTPYEAGNGYRVKL 769

Query: 313 D 313
           +
Sbjct: 770 N 770

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383865705|ref|XP_003708313.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|270014463|gb|EFA10911.1| hypothetical protein TcasGA2_TC001737 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|380021100|ref|XP_003694412.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|345491156|ref|XP_001607504.2| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328722668|ref|XP_003247632.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328722670|ref|XP_003247633.1| PREDICTED: pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|347967411|ref|XP_307967.5| AGAP002217-PA [Anopheles gambiae str. PEST] gi|333466308|gb|EAA03809.5| AGAP002217-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312370781|gb|EFR19105.1| hypothetical protein AND_23055 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|157131387|ref|XP_001662224.1| nad dehydrogenase [Aedes aegypti] gi|108871549|gb|EAT35774.1| AAEL012077-PC, partial [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
UNIPROTKB|F1P7E6 850 PDPR "Uncharacterized protein" 0.773 0.284 0.489 1.2e-75
UNIPROTKB|F1S433 537 LOC100525224 "Uncharacterized 0.773 0.450 0.485 3.2e-75
UNIPROTKB|A8MT40 779 PDPR "Pyruvate dehydrogenase p 0.773 0.310 0.485 4.1e-75
UNIPROTKB|Q8NCN5 879 PDPR "Pyruvate dehydrogenase p 0.773 0.275 0.485 4.1e-75
UNIPROTKB|F1N4M3 878 PDPR "Pyruvate dehydrogenase p 0.773 0.275 0.489 5.2e-75
UNIPROTKB|O46504 878 PDPR "Pyruvate dehydrogenase p 0.773 0.275 0.485 1.4e-74
MGI|MGI:2442188 878 Pdpr "pyruvate dehydrogenase p 0.773 0.275 0.485 3.7e-74
RGD|1308307 878 Pdpr "pyruvate dehydrogenase p 0.773 0.275 0.485 4.7e-74
UNIPROTKB|F1NG59 887 PDPR "Uncharacterized protein" 0.773 0.272 0.481 2.5e-73
FB|FBgn0029706 939 CG3626 [Drosophila melanogaste 0.773 0.257 0.481 8.6e-72
UNIPROTKB|F1P7E6 PDPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 655 (235.6 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 120/245 (48%), Positives = 167/245 (68%)

Query:    72 TFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGG 131
             TF+KP +FD +E E + C E V +IDMSSF+K +IT + +  ++ LQ L SND+++PVG 
Sbjct:   448 TFYKPDWFDIVESEVKCCKEAVCVIDMSSFTKFEITSTGDQALEVLQYLFSNDLDVPVGH 507

Query:   132 ISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTS 191
             I HTGM NE GGYENDC + R ++ S+FM+SPT QQ   + W+K H+P    + L DVT 
Sbjct:   508 IVHTGMLNEGGGYENDCSIARLSKRSFFMISPTDQQVHCWAWLKKHMPEDSNLLLEDVTW 567

Query:   192 KYTVINVVGPKAKQLLSELCDEDINLHPFSY---KRTDIGYASDVKLMGFTHTGEPGYCL 248
             KYT +N++GP+A  +LSEL    +    F     K   +GYA+ +++M  THTGEPG+ L
Sbjct:   568 KYTALNLIGPRAVDVLSELSYAPMTPDHFPSLFCKEMSVGYANGIRVMSMTHTGEPGFML 627

Query:   249 YIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAY 308
             YIP EYALHVY ++M++G+ Y  R+ G +  R +RIEKF  FW +DLN++TTP E G   
Sbjct:   628 YIPIEYALHVYNEVMSVGQKYGIRNAGYYALRSLRIEKFFAFWGQDLNTLTTPLECGRES 687

Query:   309 RVKLD 313
             RVKL+
Sbjct:   688 RVKLE 692
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0006546 "glycine catabolic process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004047 "aminomethyltransferase activity" evidence=IEA
UNIPROTKB|F1S433 LOC100525224 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A8MT40 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NCN5 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4M3 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O46504 PDPR "Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2442188 Pdpr "pyruvate dehydrogenase phosphatase regulatory subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308307 Pdpr "pyruvate dehydrogenase phosphatase regulatory subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG59 PDPR "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0029706 CG3626 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.2LOW CONFIDENCE prediction!
4th Layer2.1.2.10LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 1e-54
COG0404 379 COG0404, GcvT, Glycine cleavage system T protein ( 4e-52
PRK00389359 PRK00389, gcvT, glycine cleavage system aminomethy 8e-25
TIGR00528 362 TIGR00528, gcvT, glycine cleavage system T protein 1e-23
TIGR01372 985 TIGR01372, soxA, sarcosine oxidase, alpha subunit 1e-19
PLN02319 404 PLN02319, PLN02319, aminomethyltransferase 1e-06
PRK12486368 PRK12486, dmdA, putative dimethyl sulfoniopropiona 2e-04
COG4583189 COG4583, COG4583, Sarcosine oxidase gamma subunit 0.001
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information 
 Score =  176 bits (449), Expect = 1e-54
 Identities = 63/212 (29%), Positives = 115/212 (54%), Gaps = 5/212 (2%)

Query: 95  IIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISHTGMQNERGGYENDCILVRE 153
           + D+S   KI+++  D     +LQ+L +NDV+ +  G  ++T + NE+GG  +D  + R 
Sbjct: 1   LFDVSHMGKIEVSGPD--AAAFLQRLLTNDVSKLKPGQATYTLLLNEKGGILDDLTVYRL 58

Query: 154 TETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDE 213
            E  + +V   +   +   W++ +      +T++DVT +  V+ + GPKA++LL EL D 
Sbjct: 59  GEDEFLLVVNAANAEKDLAWLRKYAVFSK-VTVADVTDELAVLALQGPKARELLQELTDL 117

Query: 214 DINLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDYNARD 273
            +   PF      I     V++    +TGE GY +Y+P+E A+ +++ ++  GK+   + 
Sbjct: 118 SLEALPFFSFAE-IEGGGPVRVSRTGYTGEDGYEIYVPAEDAVALWEALLEAGKEAGLKP 176

Query: 274 VGMFTQRYMRIEKFIPFWAEDLNSVTTPFESG 305
            G+  +  +RIE   P +  DL+  TTP E+G
Sbjct: 177 AGLGARDSLRIEAGYPLYGHDLDEETTPLEAG 208

This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. Length = 212
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information
>gnl|CDD|237113 PRK12486, dmdA, putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>gnl|CDD|226949 COG4583, COG4583, Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
KOG2844|consensus 856 100.0
COG0404 379 GcvT Glycine cleavage system T protein (aminomethy 100.0
PLN02319 404 aminomethyltransferase 100.0
PRK12486368 dmdA putative dimethyl sulfoniopropionate demethyl 100.0
TIGR01372 985 soxA sarcosine oxidase, alpha subunit family, hete 100.0
PRK13579 370 gcvT glycine cleavage system aminomethyltransferas 100.0
TIGR00528 361 gcvT glycine cleavage system T protein. Eukaryotic 100.0
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 100.0
KOG2770|consensus 401 100.0
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 100.0
PRK09559 327 putative global regulator; Reviewed 100.0
COG0354305 Predicted aminomethyltransferase related to GcvT [ 99.91
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 99.89
KOG2929|consensus 348 99.57
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 99.46
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 99.34
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ i 98.89
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 97.7
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 97.55
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 97.47
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 95.96
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 95.79
PF0817092 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 95.19
COG0486 454 ThdF Predicted GTPase [General function prediction 92.25
PRK00389 359 gcvT glycine cleavage system aminomethyltransferas 90.33
TIGR00528 361 gcvT glycine cleavage system T protein. Eukaryotic 89.74
TIGR00450 442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 88.84
COG0404 379 GcvT Glycine cleavage system T protein (aminomethy 88.23
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 88.23
PRK13579 370 gcvT glycine cleavage system aminomethyltransferas 88.08
PLN02319 404 aminomethyltransferase 87.11
TIGR00450 442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 85.43
PRK05291 449 trmE tRNA modification GTPase TrmE; Reviewed 84.01
PRK12486 368 dmdA putative dimethyl sulfoniopropionate demethyl 82.44
>KOG2844|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.4e-81  Score=604.12  Aligned_cols=310  Identities=39%  Similarity=0.725  Sum_probs=299.0

Q ss_pred             CCcccccccchhHHHHHHhHHcCCCCCCccccCccccccccCCHHHHHhhhhcccccccccCCCCC--------------
Q psy6089           1 MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRP--------------   66 (313)
Q Consensus         1 ~ns~g~~~~gG~g~~la~wi~~g~~~~d~~~~d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~--------------   66 (313)
                      |||+|++.|||+||+|||||+||+|+.||+.+|+|||+.+++++.|+++|.+|+|+++|.+.||++              
T Consensus       379 ~ns~G~~~~GG~Gk~la~wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sply  458 (856)
T KOG2844|consen  379 FNSAGLSFGGGCGKYLAEWIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSPLY  458 (856)
T ss_pred             CCccceeccCchhHHHHHHhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCccH
Confidence            899999999999999999999999999999999999999999999999999999999999999987              


Q ss_pred             ---------------------CC------------CCCccCCccccccHHHHHHHHHcCeEEEeCCCceEEEEEccCchH
Q psy6089          67 ---------------------EM------------PPGTFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESL  113 (313)
Q Consensus        67 ---------------------~~------------~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA  113 (313)
                                           |.            +..+|++|+||+.+..||+|||+.|+++|+|+|+|+.|+  |+||
T Consensus       459 ~~L~~aGav~~e~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~--G~da  536 (856)
T KOG2844|consen  459 DRLESAGAVFGEKHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDIT--GQDA  536 (856)
T ss_pred             HHHHhcccchhhhccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeec--cHHH
Confidence                                 11            224588888999999999999999999999999999999  9999


Q ss_pred             HHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCC-CCceEEEEecCC
Q psy6089         114 VDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPT-KHYITLSDVTSK  192 (313)
Q Consensus       114 ~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~  192 (313)
                      .+.||+||++|++.++|..+||+|||++|++++|++|.|+++++|+|+.++.++.+++.||+++++. +.+|++.|+|++
T Consensus       537 ~e~ld~LfSanv~~~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~  616 (856)
T KOG2844|consen  537 VELLDYLFSANVDVPVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDE  616 (856)
T ss_pred             HHHHHHHhhcCCCCCCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999775 589999999999


Q ss_pred             eEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHHhcCccC
Q psy6089         193 YTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIMTLGKDY  269 (313)
Q Consensus       193 ~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~  269 (313)
                      +++|+|+||.||.+|++|++.|+   .|||.++++++++++ +++++|++++||+|||||+|++++.++|++|++||+++
T Consensus       617 ~~~l~i~GP~sR~vLqelt~~dls~~~fp~~~~k~l~vg~~-girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~  695 (856)
T KOG2844|consen  617 LGALSIIGPQSRKVLQELTDADLSDDHFPFLTTKELKVGNA-GIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEE  695 (856)
T ss_pred             hceeeecCchHHHHHHhccCCCCCccccCcceeeeeecccc-ceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhh
Confidence            99999999999999999999999   899999999999995 89999999999999999999999999999999999999


Q ss_pred             CceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089         270 NARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD  313 (313)
Q Consensus       270 g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~  313 (313)
                      |++.+|++|+++|||||+|.+||+||++++||+|||+.|+|+|+
T Consensus       696 ~l~naGyya~~aLriEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k  739 (856)
T KOG2844|consen  696 GLQNAGYYALRALRIEKFYRAWGQDLNPDTTPLEAGLEFRVKLK  739 (856)
T ss_pred             ccccchhHHHHHHHHHHHHHhhccccCCCCChhhccceeEEecC
Confidence            99999999999999999999999999999999999999999985

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>KOG2770|consensus Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>KOG2929|consensus Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [] Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
1yx2_A365 Crystal Structure Of The Probable Aminomethyltransf 6e-23
1woo_A 364 Crystal Structure Of T-Protein Of The Glycine Cleav 1e-18
1pj5_A 830 Crystal Structure Of Dimethylglycine Oxidase Of Art 1e-17
3gsi_A 827 Crystal Structure Of D552a Dimethylglycine Oxidase 9e-17
1vrq_A 964 Crystal Structure Of Heterotetrameric Sarcosine Oxi 1e-14
2gag_A 965 Heteroteterameric Sarcosine: Structure Of A Diflavi 3e-13
2gah_A 965 Heterotetrameric Sarcosine: Structure Of A Diflavin 1e-12
1v5v_A 401 Crystal Structure Of A Component Of Glycine Cleavag 1e-12
3a8i_A 364 Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Len 3e-09
3a8k_A 364 Crystal Structure Of Etd97n-Ehred Complex Length = 1e-08
1vlo_A 381 Crystal Structure Of Aminomethyltransferase (T Prot 2e-07
1wsr_A 375 Crystal Structure Of Human T-Protein Of Glycine Cle 1e-05
3tfh_A369 Dmsp-Dependent Demethylase From P. Ubique - Apo Len 2e-05
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 123/240 (51%), Gaps = 10/240 (4%)
Query: 76  PKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVN-IPVGGISH 134
           P  F  +++E+ A     G+ D+S   +++++ +D   + +LQ+L +NDV+ +  G   +
Sbjct: 30  PVQFSSIKKEHEAVRTAAGLFDVSHXGEVEVSGNDS--LSFLQRLXTNDVSALTPGRAQY 87
Query: 135 TGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITLSDVTSKYT 194
           T      GG  +D ++ ++ E  Y +V   S   +   W K H      + + + + +  
Sbjct: 88  TAXCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWXKEHAAGD--VQIDNQSDQIA 145
Query: 195 VINVVGPKAKQLLSELCDEDIN-LHPFSY-KRTDI-GYASDVKLMGFTHTGEPGYCLYIP 251
           ++ V GPKA+ +L  L D D++ L PF++    DI G  + +   G+T  GE GY +Y  
Sbjct: 146 LLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYT--GEDGYEIYCR 203
Query: 252 SEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVK 311
           S+ A H+++KI+  G  Y     G+  +  +R E  IP + ++L    TP E+G  + VK
Sbjct: 204 SDDAXHIWKKIIDAGDAYGLIPCGLGARDTLRFEANIPLYGQELTRDITPIEAGIGFAVK 263
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 Back     alignment and structure
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830 Back     alignment and structure
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827 Back     alignment and structure
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 In Complex With Folinic Acid Length = 964 Back     alignment and structure
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure
>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 Back     alignment and structure
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Length = 364 Back     alignment and structure
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex Length = 364 Back     alignment and structure
>pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein; Tetrahydrofolate-Dependent) Of Glycine Cleavage System (Np417381) From Escherichia Coli K12 At 1.70 A Resolution Length = 381 Back     alignment and structure
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375 Back     alignment and structure
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo Length = 369 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 1e-92
3ttg_A355 Putative aminomethyltransferase; structural genomi 5e-35
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 4e-29
1wos_A 364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 5e-29
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 1e-27
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 8e-26
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 3e-22
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 2e-21
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 2e-20
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 1e-19
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 2e-08
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 5e-06
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 7e-06
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 2e-05
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 6e-05
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
 Score =  291 bits (748), Expect = 1e-92
 Identities = 69/371 (18%), Positives = 134/371 (36%), Gaps = 61/371 (16%)

Query: 1   MNGNSLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYR 60
                +  + G+ +A+AE +T G +  +L   D+ RF D+    +Y+ +  ++     Y 
Sbjct: 357 AEAVWVTHSAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYD 416

Query: 61  VGDPRPEMPPG------------------------------------------------- 71
           V  P                                                        
Sbjct: 417 VLHPLQPRLSPRNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPA 476

Query: 72  --TFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPV 129
              +           E       V + DM+   +++++      +  LQ+L + D+    
Sbjct: 477 RDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPG--ALKLLQELTTADLAKKP 534

Query: 130 GGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHY----IT 185
           G +++T + +  GG  +D  + R +E ++ + +  +  T  FE    H          + 
Sbjct: 535 GAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQ 594

Query: 186 LSDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTG 242
           + D T     I + GP A+ L+S++ D+D     L  F  K   IG    V  M  ++ G
Sbjct: 595 VRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGI-PVTAMRLSYVG 653

Query: 243 EPGYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPF 302
           E G+ LY  ++    ++  +   G+ +     G      +R+EK    W  D+ +   PF
Sbjct: 654 ELGWELYTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPF 713

Query: 303 ESGSAYRVKLD 313
           E+G  + VK+ 
Sbjct: 714 EAGLGFAVKMA 724
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397 Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382 Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405 Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389 Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 100.0
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 100.0
1wos_A 364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 100.0
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 100.0
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 100.0
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 100.0
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 100.0
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 100.0
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 100.0
3ttg_A355 Putative aminomethyltransferase; structural genomi 100.0
1vly_A 338 SPOT PR51, unknown protein from 2D-PAGE; structura 100.0
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 100.0
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 100.0
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 97.53
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 97.45
2bry_A497 NEDD9 interacting protein with calponin homology a 97.25
3gir_A 393 Aminomethyltransferase; glycine cleavage system, a 93.07
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 92.61
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 91.98
1wsr_A 375 Aminomethyltransferase; glycine-cleavage sytem; 2. 91.23
1yx2_A 365 Aminomethyltransferase; glycine cleavage system T 90.72
1vlo_A 381 Aminomethyltransferase; NP417381, tetrahydrofolat 90.6
1vly_A 338 SPOT PR51, unknown protein from 2D-PAGE; structura 89.74
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 89.65
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 88.67
3ttg_A 355 Putative aminomethyltransferase; structural genomi 88.32
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 87.72
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 87.14
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cy 85.59
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cy 83.77
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 83.19
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 81.87
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-64  Score=522.84  Aligned_cols=303  Identities=22%  Similarity=0.402  Sum_probs=283.4

Q ss_pred             cccccchhHHHHHHhHHcCCCCCCccccCccccccccCCHHHHHhhhhcccccccccCCCCC------------------
Q psy6089           5 SLQGAGGIGRAVAEWMTHGEATQELLSFDVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRP------------------   66 (313)
Q Consensus         5 g~~~~gG~g~~la~wi~~g~~~~d~~~~d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~------------------   66 (313)
                      |+++|+|+|+.||+||.+|+|++|+..+|++||.+...+++|++.|+.|.++..|.++||++                  
T Consensus       361 G~~~ap~~g~~la~li~~~~~~~dl~~~~~~Rf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~tpl~~~~~  440 (830)
T 1pj5_A          361 WVTHSAGVAKAMAELLTTGRSETDLGECDITRFEDVQLTPEYVSETSQQNFVEIYDVLHPLQPRLSPRNLRVSPFHARHK  440 (830)
T ss_dssp             CGGGHHHHHHHHHHHHHHSSCSSCCTTTBGGGCCGGGGSHHHHHHHHHHHHHTTTCCCCTTCCCSSSCCSBCCTTHHHHH
T ss_pred             hHHhhHHHHHHHHHHHhCCCCCccccccChhhhccccCCHHHHHHHHHHHHHHhhccCCCCCccccccccccCcCHHHHH
Confidence            78999999999999999999999999999999998888999999999999999999999987                  


Q ss_pred             -----CCCCCccCCcccccc----------------------------HHHHHHHHHcCeEEEeCCCceEEEEEccCchH
Q psy6089          67 -----EMPPGTFFKPKFFDF----------------------------MEEEYRACFEGVGIIDMSSFSKIKITCSDESL  113 (313)
Q Consensus        67 -----~~~~~~~~~p~~~~~----------------------------~~~E~~a~r~~~~l~Dls~~~~i~v~~~G~dA  113 (313)
                           +.+..+|++|.||..                            +.+||+++|++|+|||+|||++|+|+  |+||
T Consensus       441 ~~ga~~~~~~g~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~a~r~~~gl~d~s~~~~~~v~--G~da  518 (830)
T 1pj5_A          441 ELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVS--GPGA  518 (830)
T ss_dssp             HTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTTSCEEEEE--STTH
T ss_pred             HcCCEEEEECCEecccccCCcccccccccccccccccccccccccchhHHHHHHHHHhCeEEEEcCcEEEEEEE--CcCH
Confidence                 335678999999876                            78999999999999999999999999  9999


Q ss_pred             HHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhCCCC------Cc-eEE
Q psy6089         114 VDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTK------HY-ITL  186 (313)
Q Consensus       114 ~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~~~~------~~-V~i  186 (313)
                      .+|||+++||||++++|+++||+|||++|+|++|++|+|+++++|+|   ++..+.+++||++++...      .+ |+|
T Consensus       519 ~~fL~~~~t~dv~l~~g~~~y~~~l~~~G~i~~d~~v~~~~~~~~~l---~~~~~~~~~~l~~~~~~~~~~~~~~~~v~i  595 (830)
T 1pj5_A          519 LKLLQELTTADLAKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQL---GANGNIDTAYFERAARHQTQSGSATDWVQV  595 (830)
T ss_dssp             HHHHHHHBSSCCCSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEE---ECSSHHHHHHHHHHHHHHHHHSCTTCCCEE
T ss_pred             HHHHHHhccccccCCCCcEEEeEEECCCCEEEEeEEEEEEeCCEEEE---EeCHHHHHHHHHHHhhhcccccCCCCeEEE
Confidence            99999999999988899999999999999999999999999888887   344567999999986521      26 999


Q ss_pred             EEecCCeEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccccHHHHHHHHH
Q psy6089         187 SDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSEYALHVYQKIM  263 (313)
Q Consensus       187 ~d~t~~~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~~a~~l~~~L~  263 (313)
                      +|+|+++++|+||||+|+++|+++++.|+   ++||++++.+++++ .+++++|++|+||+||||++|.+.+..+|++|+
T Consensus       596 ~d~s~~~~~~~l~Gp~a~~~l~~~~~~dl~~~~~~~~~~~~~~~~g-~~~~~~r~~~tge~g~ei~~~~~~~~~l~~~l~  674 (830)
T 1pj5_A          596 RDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGG-IPVTAMRLSYVGELGWELYTSADNGQRLWDALW  674 (830)
T ss_dssp             EECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETT-EEEEEECCCTTSSSEEEEEEEHHHHHHHHHHHH
T ss_pred             EEccCCEEEEEEECcCHHHHHHHhcCcCCccccCCCceEEEEEECC-EEEEEEECcccCCCcEEEEecHHHHHHHHHHHH
Confidence            99999999999999999999999988777   48999999999988 579999999999999999999999999999999


Q ss_pred             hcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089         264 TLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD  313 (313)
Q Consensus       264 ~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~  313 (313)
                      ++|+++|+.|+|+.||++||||+|+|.||+|++++++|+|+||+|+|+|+
T Consensus       675 ~ag~~~~~~~~g~~a~~~lRle~G~~~~g~d~~~~~~P~e~~l~~~v~~~  724 (830)
T 1pj5_A          675 QAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMA  724 (830)
T ss_dssp             HHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTT
T ss_pred             hhhhhcCCEEehhhhhhhhhhhcCCccccccCCCCCCHHHCCCcCeeeCC
Confidence            99999999999999999999999999999999999999999999999985
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase 7e-33
d1vloa2274 d.250.1.1 (A:4-277) Glycine cleavage system T prot 3e-29
d1v5va2310 d.250.1.1 (A:3-312) Glycine cleavage system T prot 7e-27
d1wosa2278 d.250.1.1 (A:1-278) Glycine cleavage system T prot 9e-24
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-t 5e-17
d1pj5a2305 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox 1e-06
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

 Score =  121 bits (304), Expect = 7e-33
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 10/249 (4%)

Query: 72  TFFKPKFFDFMEEEYRACFEGVGIIDMSSFSKIKITCSDESLVDWLQQLCSNDVNIPVGG 131
            +           E       V + DM+   +++++      +  LQ+L + D+    G 
Sbjct: 52  AWSGMFSSPIAAAEAWKTRTAVAMYDMTPLKRLEVSGPGA--LKLLQELTTADLAKKPGA 109

Query: 132 ISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHLPTKHYITL----S 187
           +++T + +  GG  +D  + R +E ++ + +  +  T  FE    H       T      
Sbjct: 110 VTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQSGSATDWVQVR 169

Query: 188 DVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEP 244
           D T     I + GP A+ L+S++ D+D     L  F  K   IG    V  M  ++ GE 
Sbjct: 170 DTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGI-PVTAMRLSYVGEL 228

Query: 245 GYCLYIPSEYALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFES 304
           G+ LY  ++    ++  +   G+ +     G      +R+EK    W  D+ +   PFE+
Sbjct: 229 GWELYTSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEA 288

Query: 305 GSAYRVKLD 313
           G  + VK+ 
Sbjct: 289 GLGFAVKMA 297
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 310 Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 278 Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 100.0
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 100.0
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 100.0
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 100.0
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 100.0
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 96.45
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 94.33
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 93.8
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 91.76
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 88.05
d1v5va2 310 Glycine cleavage system T protein, GcvT {Pyrococcu 86.29
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 83.47
d1vloa2 274 Glycine cleavage system T protein, GcvT {Escherich 82.5
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=1.5e-63  Score=461.75  Aligned_cols=277  Identities=21%  Similarity=0.320  Sum_probs=254.9

Q ss_pred             CccccccccCCHHHHHhhhhcccccccccCCCCC------------CCCCCccCCccccccHHHHHHHHHcCeEEEeCCC
Q psy6089          33 DVQRFLDLHNNRQYLQQRIREVVGSTYRVGDPRP------------EMPPGTFFKPKFFDFMEEEYRACFEGVGIIDMSS  100 (313)
Q Consensus        33 d~~Rf~~~~~~~~~~~~r~~e~~~~~~~~~~p~~------------~~~~~~~~~p~~~~~~~~E~~a~r~~~~l~Dls~  100 (313)
                      ++|+ +|+|..|.-..+++.++.|+..++.|+..            .....+|..|.||+.+.+||+|||++|||||+||
T Consensus         2 ~lr~-spl~~~h~~~GA~f~~~~Gwe~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~E~~avR~~vglfD~S~   80 (315)
T d1pj5a4           2 NLRV-SPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTP   80 (315)
T ss_dssp             CSBC-CTTHHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTT
T ss_pred             CCcc-CccHHHHHHcCCEEEEecceecccccCcCCccccccccccccccccccccccccHHHHHHHHHHHHhcceecccc
Confidence            4566 99999999999999999999988888532            1234578889999999999999999999999999


Q ss_pred             ceEEEEEccCchHHHHHhhhcccCcccCCCCEEEeeeecCCCeeEEEEEEEEecCCeEEEEcCCcchHHHHHHHHhhC--
Q psy6089         101 FSKIKITCSDESLVDWLQQLCSNDVNIPVGGISHTGMQNERGGYENDCILVRETETSYFMVSPTSQQTRVFEWMKNHL--  178 (313)
Q Consensus       101 ~~~i~v~~~G~dA~~fL~~l~t~di~l~~G~~~~t~~ln~~G~i~~d~~v~r~~~d~~~l~~~~~~~~~~~~~L~~~~--  178 (313)
                      |++|+|+  |+||.+|||+++|||++..+|+++||+|||++|+|++|++|+|+++++|+|+++++.......|+.++.  
T Consensus        81 ~g~i~v~--G~da~~fL~~l~t~di~~~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~~~~~~  158 (315)
T d1pj5a4          81 LKRLEVS--GPGALKLLQELTTADLAKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQ  158 (315)
T ss_dssp             SCEEEEE--STTHHHHHHHHBSSCCCSCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ceeEEee--ccchHHHhhhhhccccccccCceeEEEeeccccCeeeeeeeeecccccccccccchhhhhhhhhhhhhhhh
Confidence            9999999  999999999999999986779999999999999999999999999999999999888777777765432  


Q ss_pred             --CCCCceEEEEecCCeEEEEEeCccHHHHHhhccccCC---CCCCcceEEEEECCcccEEEEecCCCCCceEEEEeccc
Q psy6089         179 --PTKHYITLSDVTSKYTVINVVGPKAKQLLSELCDEDI---NLHPFSYKRTDIGYASDVKLMGFTHTGEPGYCLYIPSE  253 (313)
Q Consensus       179 --~~~~~V~i~d~t~~~~~l~l~GP~a~~vL~~l~~~dl---~~~~~~~~~~~i~~~~~v~~~R~~~~Ge~G~el~~~~~  253 (313)
                        ....+|+++|+|+++++|+||||+|+++|+++++.++   .+|++++++++++| .+|+++|++|+||+||||++|.+
T Consensus       159 ~~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g-~~v~i~R~g~tGE~G~Ei~~~~~  237 (315)
T d1pj5a4         159 SGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGG-IPVTAMRLSYVGELGWELYTSAD  237 (315)
T ss_dssp             HSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETT-EEEEEECCCTTSSSEEEEEEEHH
T ss_pred             cccccccceeEecCcceeeeeecCchHHHHHHHccccccccccccccceeEEEECC-EEEEEEecCccCCCeEEecccHH
Confidence              2236799999999999999999999999999998876   79999999999998 57999999999999999999999


Q ss_pred             cHHHHHHHHHhcCccCCceecCccchhhhhhcccCCcccCCCCCCCCcccccCCccccCC
Q psy6089         254 YALHVYQKIMTLGKDYNARDVGMFTQRYMRIEKFIPFWAEDLNSVTTPFESGSAYRVKLD  313 (313)
Q Consensus       254 ~a~~l~~~L~~ag~~~g~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~Eagl~~~v~~~  313 (313)
                      .+..+|++|+++|+++|++|+|+.|+++||||||||.||+|+++++||+|+||+|+|+++
T Consensus       238 ~a~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~~~~~P~EagL~~~v~~~  297 (315)
T d1pj5a4         238 NGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMA  297 (315)
T ss_dssp             HHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTT
T ss_pred             HHHHHHHHHHhhhhcCCcEecCHHHHHHHHHHcCCCcccccCCCCCCHHHcCcchhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999985
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure