Psyllid ID: psy6097

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------

YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGDEYLPWELV

ccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEccccccccEEEEcccccccccccEEEEcEEEEEcccccccccccccccccccEEEcccEEEEEEEccccccccccc

ccccEEEEccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccEEEEEccHccccccEEEEccccccccccEEEEEccEEEEcHHcccccccccccccccEEEEcccEEEEEEcccccccccccc

ygkneinvpiqniSSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKrskglyeevptthlvpgdiivipkhgctlacdatllqgncivnesmlTVHGALFIMWEDVNHTLYCGTVILQAryhgdeylpwelv

YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRqkslhdtvntvdkvtvkrskglyeevptthlvpgDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGdeylpwelv

YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHdtvntvdkvtvkRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGDEYLPWELV

******NVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGDEYLPWE**

YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSL****NTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGDE*LPWELV

YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGDEYLPWELV

YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGDEYLPW***

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGNCIVNESMLTVHGALFIMWEDVNHTLYCGTVILQARYHGDEYLPWELV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		167	2.2.26 [Sep-21-2011]
Q95JN5		492	Probable cation-transport	N/A	N/A	0.958	0.325	0.407	6e-31
Q9H7F0		1226	Probable cation-transport	yes	N/A	0.958	0.130	0.407	7e-31
Q5XF89		1219	Probable cation-transport	yes	N/A	0.958	0.131	0.407	1e-30
Q9NQ11		1180	Probable cation-transport	no	N/A	0.928	0.131	0.414	4e-29
Q9CTG6		1169	Probable cation-transport	no	N/A	0.928	0.132	0.402	4e-28
Q27533		1256	Probable cation-transport	yes	N/A	0.934	0.124	0.369	7e-28
Q5ZKB7		1204	Probable cation-transport	no	N/A	0.940	0.130	0.402	3e-27
Q5XF90		1193	Probable cation-transport	no	N/A	0.946	0.132	0.368	2e-25
Q4VNC0		1218	Probable cation-transport	no	N/A	0.934	0.128	0.405	3e-25
Q3TYU2		1216	Probable cation-transport	no	N/A	0.910	0.125	0.403	5e-25

>sp\|Q95JN5\|AT133_MACFA Probable cation-transporting ATPase 13A3 (Fragment) OS=Macaca fascicularis GN=ATP13A3 PE=2 SV=2	Back alignment and function desciption

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 24/184 (13%)

Query: 1   YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSV 60
           YG NEI V + ++  L + E LNPFYIFQ+F++ +W  + YYYY  AI+ MS+  IVSS+
Sbjct: 191 YGVNEIAVKVPSVFKLLIKEVLNPFYIFQLFSVILWSTDEYYYYALAIVVMSIVSIVSSL 250

Query: 61  IQTRQK--SLHDTVNTVD--KVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATL 116
              R++   LHD V T    +V+V R     EE+ +T LVPGD++VIP +G  + CDA L
Sbjct: 251 YSIRKQYVMLHDMVATHSTVRVSVCRVNEEIEEIFSTDLVPGDVMVIPLNGTIMPCDAVL 310

Query: 117 LQGNCIVNESMLT--------------------VHGALFIMWEDVNHTLYCGTVILQARY 156
           + G CIVNESMLT                    +   L+       HTL+CGT ++Q R+
Sbjct: 311 INGTCIVNESMLTGESVPVTKTNLPNPSVDVKGIGDELYNPETHKRHTLFCGTTVIQTRF 370

Query: 157 HGDE 160
           +  E
Sbjct: 371 YTGE 374

Macaca fascicularis (taxid: 9541)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: -

>sp\|Q9H7F0\|AT133_HUMAN Probable cation-transporting ATPase 13A3 OS=Homo sapiens GN=ATP13A3 PE=1 SV=4	Back alignment and function description

>sp\|Q5XF89\|AT133_MOUSE Probable cation-transporting ATPase 13A3 OS=Mus musculus GN=Atp13a3 PE=1 SV=1	Back alignment and function description

>sp\|Q9NQ11\|AT132_HUMAN Probable cation-transporting ATPase 13A2 OS=Homo sapiens GN=ATP13A2 PE=1 SV=2	Back alignment and function description

>sp\|Q9CTG6\|AT132_MOUSE Probable cation-transporting ATPase 13A2 OS=Mus musculus GN=Atp13a2 PE=2 SV=3	Back alignment and function description

>sp\|Q27533\|YH2M_CAEEL Probable cation-transporting ATPase W08D2.5 OS=Caenorhabditis elegans GN=W08D2.5 PE=2 SV=2	Back alignment and function description

>sp\|Q5ZKB7\|AT134_CHICK Probable cation-transporting ATPase 13A4 OS=Gallus gallus GN=ATP13A4 PE=2 SV=1	Back alignment and function description

>sp\|Q5XF90\|AT134_MOUSE Probable cation-transporting ATPase 13A4 OS=Mus musculus GN=Atp13a4 PE=2 SV=1	Back alignment and function description

>sp\|Q4VNC0\|AT135_HUMAN Probable cation-transporting ATPase 13A5 OS=Homo sapiens GN=ATP13A5 PE=2 SV=1	Back alignment and function description

>sp\|Q3TYU2\|AT135_MOUSE Probable cation-transporting ATPase 13A5 OS=Mus musculus GN=Atp13a5 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		167
189238168		1560	PREDICTED: similar to cation-transportin	0.958	0.102	0.609	1e-53
328697992		1172	PREDICTED: probable cation-transporting	0.958	0.136	0.572	1e-47
328697990		1226	PREDICTED: probable cation-transporting	0.958	0.130	0.572	1e-47
340725047		1228	PREDICTED: probable cation-transporting	0.958	0.130	0.551	2e-46
340725049		1235	PREDICTED: probable cation-transporting	0.958	0.129	0.551	2e-46
350398420		1228	PREDICTED: probable cation-transporting	0.958	0.130	0.545	5e-46
328782814		1232	PREDICTED: probable cation-transporting	0.952	0.129	0.543	2e-44
380021090		1229	PREDICTED: probable cation-transporting	0.952	0.129	0.537	2e-43
383865755		1224	PREDICTED: probable cation-transporting	0.952	0.129	0.537	3e-43
322785277		1224	hypothetical protein SINV_80648 [Solenop	0.958	0.130	0.511	3e-42

>gi\|189238168\|ref\|XP_973365.2\| PREDICTED: similar to cation-transporting ATPase [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 14/174 (8%)

Query: 1   YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSV 60
           YG NEINVP+Q+I +L VLEAL PFYIFQ+F+L VWFAEAYYYYT AI+ MSVFGI +S+
Sbjct: 583 YGTNEINVPVQSIVTLLVLEALTPFYIFQLFSLIVWFAEAYYYYTIAIVIMSVFGISTSI 642

Query: 61  IQTR--QKSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ 118
           IQTR  Q++L  TV+T DK+ V RS G ++E+PTT LVPGD+IVIP HGC + CDA LL 
Sbjct: 643 IQTRKSQENLKGTVHTADKIMVSRSDGTFDEIPTTELVPGDVIVIPSHGCDMQCDAVLLN 702

Query: 119 GNCIVNESMLTVHG------------ALFIMWEDVNHTLYCGTVILQARYHGDE 160
           GNCIVNESMLT                L+ + E  NHTL+CGT I+Q RY+G E
Sbjct: 703 GNCIVNESMLTGESVPVTKTALPNNDKLYNVKEHGNHTLFCGTKIIQTRYYGTE 756

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|328697992\|ref\|XP_003240506.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 2 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|328697990\|ref\|XP_003240505.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 1 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|340725047\|ref\|XP_003400886.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 1 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|340725049\|ref\|XP_003400887.1\| PREDICTED: probable cation-transporting ATPase 13A3-like isoform 2 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|350398420\|ref\|XP_003485187.1\| PREDICTED: probable cation-transporting ATPase 13A3-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|328782814\|ref\|XP_395540.4\| PREDICTED: probable cation-transporting ATPase 13A3-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|380021090\|ref\|XP_003694407.1\| PREDICTED: probable cation-transporting ATPase 13A3-like [Apis florea]	Back alignment and taxonomy information

>gi\|383865755\|ref\|XP_003708338.1\| PREDICTED: probable cation-transporting ATPase 13A3-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|322785277\|gb\|EFZ11970.1\| hypothetical protein SINV_80648 [Solenopsis invicta]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		167
FB\|FBgn0052000		1451	CG32000 [Drosophila melanogast	0.958	0.110	0.451	1.8e-33
UNIPROTKB\|E2RGV7		1227	ATP13A3 "Uncharacterized prote	0.772	0.105	0.451	2.1e-28
UNIPROTKB\|J9P4P2		1257	ATP13A3 "Uncharacterized prote	0.772	0.102	0.451	2.3e-28
MGI\|MGI:2685387		1219	Atp13a3 "ATPase type 13A3" [Mu	0.772	0.105	0.443	3.4e-28
UNIPROTKB\|F1SFG4		1226	ATP13A3 "Putative cation-trans	0.772	0.105	0.451	3.5e-28
UNIPROTKB\|E1BG26		1226	ATP13A3 "Uncharacterized prote	0.772	0.105	0.458	4.4e-28
UNIPROTKB\|Q9H7F0		1226	ATP13A3 "Probable cation-trans	0.772	0.105	0.451	5.7e-28
UNIPROTKB\|G3V677		1219	LOC678704 "RCG36659, isoform C	0.772	0.105	0.436	9.1e-28
RGD\|1590881		1249	Atp13a3 "ATPase type 13A3" [Ra	0.772	0.103	0.436	9.7e-28
UNIPROTKB\|E1C7N6		1223	ATP13A3 "Uncharacterized prote	0.772	0.105	0.458	1.9e-27

FB\|FBgn0052000 CG32000 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 378 (138.1 bits), Expect = 1.8e-33, P = 1.8e-33
 Identities = 79/175 (45%), Positives = 103/175 (58%)

Query:     1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSV 60
             +G NEI VP+++  +L  LE LNPFY+FQ+F++ +WF   YYYY   I+ MSVFGI  SV
Sbjct:   335 FGDNEITVPLRDFKTLLFLEVLNPFYVFQLFSVILWFTYDYYYYACVILLMSVFGITVSV 394

Query:    61 IQTR--QKSLHXXXXXXXXXXXXRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQ 118
             +QT+  Q  L               KGL +E+PT  +VPGDII IP  GCTL CDA L+ 
Sbjct:   395 LQTKKNQDVLQKTVYNTGNAWVVDHKGLSKELPTRAIVPGDIIEIPSSGCTLHCDAILIS 454

Query:   119 GNCIVNESMLTVHGA-------------LFIMWEDVNHTLYCGTVILQARYHGDE 160
             GNCI++ESMLT                 +F   E   HTL+CGT ++Q RY G +
Sbjct:   455 GNCILDESMLTGESVPVTKTPLPSKRDMIFDKTEHARHTLFCGTKVIQTRYIGSK 509

GO:0042625 "ATPase activity, coupled to transmembrane movement of ions" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB\|E2RGV7 ATP13A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P4P2 ATP13A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2685387 Atp13a3 "ATPase type 13A3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SFG4 ATP13A3 "Putative cation-transporting ATPase 13A3" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BG26 ATP13A3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9H7F0 ATP13A3 "Probable cation-transporting ATPase 13A3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V677 LOC678704 "RCG36659, isoform CRA_c" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

RGD\|1590881 Atp13a3 "ATPase type 13A3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C7N6 ATP13A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		167
TIGR01657		1054	TIGR01657, P-ATPase-V, P-type ATPase of unknown pu	2e-43
COG0474		917	COG0474, MgtA, Cation transport ATPase [Inorganic	1e-12
TIGR01494		543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	1e-11
pfam00122		222	pfam00122, E1-E2_ATPase, E1-E2 ATPase	7e-11
COG2217		713	COG2217, ZntA, Cation transport ATPase [Inorganic	1e-06
TIGR01512		536	TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb	5e-06
TIGR01525		556	TIGR01525, ATPase-IB_hvy, heavy metal translocatin	5e-06
TIGR01524		867	TIGR01524, ATPase-IIIB_Mg, magnesium-translocating	8e-04
TIGR01647		754	TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e	0.002

>gnl\|CDD\|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)	Back alignment and domain information

 Score =  152 bits (386), Expect = 2e-43
 Identities = 70/174 (40%), Positives = 95/174 (54%), Gaps = 20/174 (11%)

Query: 1   YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSV 60
           YGKNEI +P+ +   L   E L+PFY+FQVF++ +W  + YYYY+  I+ MS   I  SV
Sbjct: 152 YGKNEIEIPVPSFLELLKEEVLHPFYVFQVFSVILWLLDEYYYYSLCIVFMSSTSISLSV 211

Query: 61  IQTRQKS--LHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPK-HGCTLACDATLL 117
            Q R++   L D V+    V V R+ G +  + +  LVPGDI+ IP+    T+ CD+ LL
Sbjct: 212 YQIRKQMQRLRDMVHKPQSVIVIRN-GKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLL 270

Query: 118 QGNCIVNESMLT----------------VHGALFIMWEDVNHTLYCGTVILQAR 155
            G+CIVNESMLT                    LF+      H L+ GT ILQ R
Sbjct: 271 SGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIR 324

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054

>gnl\|CDD\|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>gnl\|CDD\|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase	Back alignment and domain information

>gnl\|CDD\|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase	Back alignment and domain information

>gnl\|CDD\|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		167
TIGR01657		1054	P-ATPase-V P-type ATPase of unknown pump specifici	100.0
TIGR01647		755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	100.0
TIGR01523		1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	100.0
KOG0208\|consensus		1140		100.0
TIGR01522		884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	100.0
PRK10517		902	magnesium-transporting ATPase MgtA; Provisional	100.0
TIGR01524		867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	100.0
TIGR01517		941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	100.0
PRK15122		903	magnesium-transporting ATPase; Provisional	99.98
TIGR01106		997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.97
KOG0202\|consensus		972		99.97
COG0474		917	MgtA Cation transport ATPase [Inorganic ion transp	99.96
TIGR01116		917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.95
KOG0205\|consensus		942		99.95
KOG0204\|consensus		1034		99.94
KOG0209\|consensus		1160		99.94
TIGR01512		536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.94
PRK14010		673	potassium-transporting ATPase subunit B; Provision	99.93
TIGR01525		556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.93
PF00122		230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	99.93
PRK01122		679	potassium-transporting ATPase subunit B; Provision	99.92
TIGR01511		562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.92
TIGR01497		675	kdpB K+-transporting ATPase, B subunit. One sequen	99.92
PRK11033		741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.91
COG2217		713	ZntA Cation transport ATPase [Inorganic ion transp	99.91
TIGR01652		1057	ATPase-Plipid phospholipid-translocating P-type AT	99.9
PRK10671		834	copA copper exporting ATPase; Provisional	99.9
KOG0203\|consensus		1019		99.85
TIGR01494		499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.85
PLN03190		1178	aminophospholipid translocase; Provisional	99.85
KOG0207\|consensus		951		99.82
COG2216		681	KdpB High-affinity K+ transport system, ATPase cha	99.65
KOG0210\|consensus		1051		99.57
KOG0206\|consensus		1151		99.47
smart00831		64	Cation_ATPase_N Cation transporter/ATPase, N-termi	98.29
PF00690		69	Cation_ATPase_N: Cation transporter/ATPase, N-term	98.24
KOG4383\|consensus		1354		93.56
PF03120		82	DNA_ligase_OB: NAD-dependent DNA ligase OB-fold do	86.32
PRK11507		70	ribosome-associated protein; Provisional	85.47
KOG0210\|consensus		1051		81.24
PF12791		56	RsgI_N: Anti-sigma factor N-terminus; InterPro: IP	80.28

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)	Back alignment and domain information

Probab=100.00  E-value=3.5e-34  Score=262.18  Aligned_cols=153  Identities=44%  Similarity=0.773  Sum_probs=142.1

Q ss_pred             CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCCeE
Q psy6097           1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTVDKV   78 (167)
Q Consensus         1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~   78 (167)
                      ||+|+++.+++|+++++++++++||++++++++++|+..+||+++++++++++++.....++++++  +++++....+.+
T Consensus       152 yG~N~i~~~~~s~~~ll~~~~~~p~~i~~i~~~~l~~~~~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~~~~~v  231 (1054)
T TIGR01657       152 YGKNEIEIPVPSFLELLKEEVLHPFYVFQVFSVILWLLDEYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVHKPQSV  231 (1054)
T ss_pred             cCCCeeecCCCCHHHHHHHHHhchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeE
Confidence            899999999999999999999999999999999999999999999999999999999999999998  888887665689


Q ss_pred             EEEecCCeeEEeeCCCcCCCcEEEEcc--CCcEEeeeEEEEeeEEEEeCCcccCCCccccccC----------------C
Q psy6097          79 TVKRSKGLYEEVPTTHLVPGDIIVIPK--HGCTLACDATLLQGNCIVNESMLTVHGALFIMWE----------------D  140 (167)
Q Consensus        79 ~V~r~~g~~~~i~~~~lv~GDii~v~~--~g~~iP~D~~vl~g~~~Vdes~ltGEs~p~~k~~----------------~  140 (167)
                      +|+|| |++++++++||+|||+|.+ +  +|+.+||||++++|+|.||||+|||||.|+.|..                +
T Consensus       232 ~V~Rd-g~~~~I~s~eLvpGDiv~l-~~~~g~~iPaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~  309 (1054)
T TIGR01657       232 IVIRN-GKWVTIASDELVPGDIVSI-PRPEEKTMPCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETS  309 (1054)
T ss_pred             EEEEC-CEEEEEEcccCCCCCEEEE-ecCCCCEecceEEEEeCcEEEecccccCCccceecccCCccccccccccccccc
Confidence            99999 9999999999999999999 8  8999999999999999999999999999999932                1


Q ss_pred             CcCEEeeccEEEEEE
Q psy6097         141 VNHTLYCGTVILQAR  155 (167)
Q Consensus       141 ~~~~v~aGt~v~~g~  155 (167)
                      ++|++|+||.+++.+
T Consensus       310 ~~~~lf~GT~v~~~~  324 (1054)
T TIGR01657       310 KKHVLFGGTKILQIR  324 (1054)
T ss_pred             cceEEEcCCEEEEEe
Confidence            356899999999743

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase	Back alignment and domain information

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type	Back alignment and domain information

>KOG0208\|consensus	Back alignment and domain information

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase	Back alignment and domain information

>PRK10517 magnesium-transporting ATPase MgtA; Provisional	Back alignment and domain information

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase	Back alignment and domain information

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase	Back alignment and domain information

>PRK15122 magnesium-transporting ATPase; Provisional	Back alignment and domain information

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit	Back alignment and domain information

>KOG0202\|consensus	Back alignment and domain information

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase	Back alignment and domain information

>KOG0205\|consensus	Back alignment and domain information

>KOG0204\|consensus	Back alignment and domain information

>KOG0209\|consensus	Back alignment and domain information

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	Back alignment and domain information

>PRK14010 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase	Back alignment and domain information

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PRK01122 potassium-transporting ATPase subunit B; Provisional	Back alignment and domain information

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase	Back alignment and domain information

>TIGR01497 kdpB K+-transporting ATPase, B subunit	Back alignment and domain information

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional	Back alignment and domain information

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase	Back alignment and domain information

>PRK10671 copA copper exporting ATPase; Provisional	Back alignment and domain information

>KOG0203\|consensus	Back alignment and domain information

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC	Back alignment and domain information

>PLN03190 aminophospholipid translocase; Provisional	Back alignment and domain information

>KOG0207\|consensus	Back alignment and domain information

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0210\|consensus	Back alignment and domain information

>KOG0206\|consensus	Back alignment and domain information

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus	Back alignment and domain information

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG4383\|consensus	Back alignment and domain information

>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []	Back alignment and domain information

>PRK11507 ribosome-associated protein; Provisional	Back alignment and domain information

>KOG0210\|consensus	Back alignment and domain information

>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		167
1mhs_A		920	Proton pump, plasma membrane ATPase; ION transport	8e-10
3b8c_A		885	ATPase 2, plasma membrane-type; P-type ATPase, pro	9e-10
2zxe_A		1028	Na, K-ATPase alpha subunit; membrane protein, ION	6e-06
2hc8_A		113	PACS, cation-transporting ATPase, P-type; copper,	1e-05
3ixz_A		1034	Potassium-transporting ATPase alpha; ION pump, H+,	1e-05
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	6e-05
3j08_A		645	COPA, copper-exporting P-type ATPase A; copper tra	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2kij_A		124	Copper-transporting ATPase 1; actuator, menkes dis	2e-04
3rfu_A		736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	4e-04
3ar4_A		995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	5e-04

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920	Back alignment and structure

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 1   YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSV 60
           YG N++    +N    F+   + P          +      +   G I  + +   V   
Sbjct: 100 YGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGF 159

Query: 61  IQTRQ-----KSLHDTVNTVDKVTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDAT 115
           +Q  Q       L  T+    K  V R  G  +E+    +VPGDI+ + + G  +  D  
Sbjct: 160 VQEFQAGSIVDELKKTLAL--KAVVLRD-GTLKEIEAPEVVPGDILQV-EEGTIIPADGR 215

Query: 116 LLQGNCI--VNESMLT 129
           ++  +    V++S LT
Sbjct: 216 IVTDDAFLQVDQSALT 231

PyMOL of 1mhs

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885	Back alignment and structure

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028	Back alignment and structure

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Length = 113	Back alignment and structure

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723	Back alignment and structure

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 124	Back alignment and structure

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736	Back alignment and structure

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		167
1mhs_A		920	Proton pump, plasma membrane ATPase; ION transport	99.97
2zxe_A		1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.97
3ixz_A		1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.97
3ar4_A		995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.97
3b8c_A		885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.96
2hc8_A		113	PACS, cation-transporting ATPase, P-type; copper,	99.93
2kij_A		124	Copper-transporting ATPase 1; actuator, menkes dis	99.92
3rfu_A		736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.91
3j08_A		645	COPA, copper-exporting P-type ATPase A; copper tra	99.91
3j09_A		723	COPA, copper-exporting P-type ATPase A; copper tra	99.9
2jmz_A		186	Hypothetical protein MJ0781; unknown function; NMR	86.92
3p42_A		236	Predicted protein; beta-grAsp, unknown function; H	81.13

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1	Back alignment and structure

Probab=99.97  E-value=1.6e-32  Score=246.63  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=136.1

Q ss_pred             CCCCccCCCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCC-Ce
Q psy6097           1 YGKNEINVPIQNISSLFVLEALNPFYIFQVFTLCVWFAEAYYYYTGAIICMSVFGIVSSVIQTRQK--SLHDTVNTV-DK   77 (167)
Q Consensus         1 yG~N~i~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~~   77 (167)
                      ||+|+++.+++++|..|+++|++|+.++++++++++++.+.|.++++++++++++..+++++++++  .++++.+.. ++
T Consensus       100 ~G~N~l~~~~~~~~~~~l~~f~~~~~~ll~~aai~s~~~g~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~  179 (920)
T 1mhs_A          100 YGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALK  179 (920)
T ss_dssp             TSSSSCCCCCCSSHHHHTHHHHHHHHHHHHHHHHHCTTCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSS
T ss_pred             cCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCE
Confidence            899999988899999999999999988777777777666666667778888889999999999988  555554433 37


Q ss_pred             EEEEecCCeeEEeeCCCcCCCcEEEEccCCcEEeeeEEEEeeE--EEEeCCcccCCCccccccCCCcCEEeeccEEEEEE
Q psy6097          78 VTVKRSKGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQGN--CIVNESMLTVHGALFIMWEDVNHTLYCGTVILQAR  155 (167)
Q Consensus        78 ~~V~r~~g~~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g~--~~Vdes~ltGEs~p~~k~~~~~~~v~aGt~v~~g~  155 (167)
                      ++|+|+ |+++++++++|+|||+|.+ ++||++||||++++|+  +.||||+|||||.|+.|  .+++.+|+||.+.+|+
T Consensus       180 a~V~Rd-G~~~~I~~~eLv~GDiV~l-~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K--~~gd~v~sGT~v~~G~  255 (920)
T 1mhs_A          180 AVVLRD-GTLKEIEAPEVVPGDILQV-EEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDK--HKGDQVFASSAVKRGE  255 (920)
T ss_dssp             CEEECS-SSEEECCTTTSCTTSEEEE-CTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEEC--CSSCEECSCBCCSCCC
T ss_pred             EEEEEC-CEEEEEEHHHcCCCCEEEe-CCCCccccceEEEecCceeeeeccccCCCCcceEe--cCCCeeecCceEecce
Confidence            999999 9999999999999999999 8999999999999996  69999999999999999  8999999999999998


Q ss_pred             eeC
Q psy6097         156 YHG  158 (167)
Q Consensus       156 ~~~  158 (167)
                      +.+
T Consensus       256 ~~~  258 (920)
T 1mhs_A          256 AFV  258 (920)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

PyMOL of 1mhs

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A	Back alignment and structure

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A	Back alignment and structure

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...	Back alignment and structure

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}	Back alignment and structure

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F	Back alignment and structure

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}	Back alignment and structure

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}	Back alignment and structure

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}	Back alignment and structure

>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A	Back alignment and structure

>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		167
d1wpga1		115	b.82.7.1 (A:125-239) Calcium ATPase, transduction	2e-05

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 76  DKVTVKRS-KGLYEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG---NCIVNESMLTVH 131
           +   V R+ +   + +    +VPGDI+ +   G  +  D  +L        V++S+LT  
Sbjct: 1   EMGKVYRADRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILTGE 59

Query: 132 GALFIMWEDVNH 143
               I   +   
Sbjct: 60  SVSVIKHTEPVP 71

PyMOL of d1wpga1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		167
d1wpga1		115	Calcium ATPase, transduction domain A {Rabbit (Ory	99.89
d1wpga4		472	Calcium ATPase, transmembrane domain M {Rabbit (Or	98.44
d1dgsa2		86	NAD+-dependent DNA ligase {Thermus filiformis [Tax	85.82
d1dq3a1		168	PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxI	85.23

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.89  E-value=2e-24  Score=148.63  Aligned_cols=80  Identities=26%  Similarity=0.373  Sum_probs=70.5

Q ss_pred             eEEEEecCCe--eEEeeCCCcCCCcEEEEccCCcEEeeeEEEEee---EEEEeCCcccCCCccccccC-----------C
Q psy6097          77 KVTVKRSKGL--YEEVPTTHLVPGDIIVIPKHGCTLACDATLLQG---NCIVNESMLTVHGALFIMWE-----------D  140 (167)
Q Consensus        77 ~~~V~r~~g~--~~~i~~~~lv~GDii~v~~~g~~iP~D~~vl~g---~~~Vdes~ltGEs~p~~k~~-----------~  140 (167)
                      .++|+|+ |+  .++|++++|+|||+|.+ ++|+++||||+++++   ++.||||+||||+.|+.|..           +
T Consensus         2 ~~kV~R~-g~~~v~~I~~~eLv~GDiv~l-~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~~~~~~~~   79 (115)
T d1wpga1           2 MGKVYRA-DRKSVQRIKARDIVPGDIVEV-AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQD   79 (115)
T ss_dssp             EEEEEBS-SCSSCEEEEGGGCCTTCEEEE-ETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCCTTCCGGG
T ss_pred             ceEEEEC-CCceEEEEeHHHCCCCCEEEE-CCCCEEeeceEEEEeeccceEEEEeecccceEEEEeeccccccccccccc
Confidence            5789999 65  36899999999999999 899999999999964   48899999999999999831           3


Q ss_pred             CcCEEeeccEEEEEEeeC
Q psy6097         141 VNHTLYCGTVILQARYHG  158 (167)
Q Consensus       141 ~~~~v~aGt~v~~g~~~~  158 (167)
                      +.|++|+||.+.+|++++
T Consensus        80 ~~n~lf~GT~V~~G~~~~   97 (115)
T d1wpga1          80 KKNMLFSGTNIAAGKALG   97 (115)
T ss_dssp             CTTEECTTCEEEECEEEE
T ss_pred             ccceEEeccEEEeeeEEE
Confidence            568899999999999864

PyMOL of d1wpga1

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}	Back information, alignment and structure

>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure