Psyllid ID: psy6102

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEccHHHHHHHHHcccccccccccEEEcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEcccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccccEEEEEEccccEEEEEEEcccEEEEEEEEEccEEEEEEEEEEcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccHcHHHccccccccccccEEEEEEEccHHHHHHHcccccccccccccEEEHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdksickegnyIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCtgeygkgklgkalhftgshfhriipqfmiqggditnfngtggesiygpcfedenfklkgiypknkypgiyPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLetgrgkeiSRKQYRDLVKKKkkkngifgcvrqgfgvarevsyveaendkplvlNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYnqsqsktqQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCddillmepNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Flexible Loop (DISEMBL)
mdksickegnyivfLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHyynqgalekkrgitehkkkletgrgkeisrkqyrdlvkkkkkkngifgcvrqgfgVAREVSYVEaendkplvlnqMEDVIRTIKNsgneyfklnrmhDAQRKYKKAVRYIKWYnqsqsktqqKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Low Complexity Region (SEG)
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVClfslgsglglglastlvgsYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVkkkkkkNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Disordered region (IsUnstruct)
****ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGAL**************************************IFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA*******
Disordered Region (DISOPRED)
************VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHY***********ITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY*************SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF*****************RMFQ***
Disordered Region (DISEMBL)
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS********FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Disordered Region (DISPRO)
********GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHK******RGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHxxxxxxxxxxxxxxxxxxxxxHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
P52009	192	Peptidyl-prolyl cis-trans	yes	N/A	0.227	0.505	0.721	5e-34
Q9P3X9	375	41 kDa peptidyl-prolyl ci	N/A	N/A	0.258	0.293	0.626	5e-34
Q5B4E7	372	Peptidyl-prolyl cis-trans	yes	N/A	0.204	0.233	0.690	8e-34
Q2U0E0	371	Peptidyl-prolyl cis-trans	yes	N/A	0.223	0.256	0.701	4e-32
Q38867	176	Peptidyl-prolyl cis-trans	no	N/A	0.234	0.568	0.68	4e-32
P73789	171	Peptidyl-prolyl cis-trans	N/A	N/A	0.227	0.567	0.670	5e-32
Q9CR16	370	Peptidyl-prolyl cis-trans	yes	N/A	0.225	0.259	0.711	5e-32
Q6DGG0	370	Peptidyl-prolyl cis-trans	yes	N/A	0.225	0.259	0.711	6e-32
P26882	370	Peptidyl-prolyl cis-trans	yes	N/A	0.225	0.259	0.711	1e-31
P52015	171	Peptidyl-prolyl cis-trans	no	N/A	0.227	0.567	0.690	1e-31

>sp|P52009|CYP1_CAEEL Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1

 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 76/97 (78%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF DVSIGEE  GR+ +ELF  +VPKTAENFRALCTGE G G+ G ALHF GS FHRIIP
Sbjct: 24  VFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRIIP 83

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           +FMIQGGD T  NGTGGESIYG  F+DENF LK   P
Sbjct: 84  EFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTGP 120

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Caenorhabditis elegans (taxid: 6239)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9P3X9|PPID_NEUCR 41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-41 PE=1 SV=1

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 81/115 (70%), Gaps = 5/115 (4%)

Query: 6   CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGS 65
            K+    VF D++IG +  GR+V EL+  IVPKTAENFRALCTGE G GKLGK LH+ GS
Sbjct: 7   VKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGS 66

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP-----KNKYPG 115
            FHR+I QFMIQGGD T  NGTGGESIYG  FEDENF+LK   P      N  PG
Sbjct: 67  TFHRVIKQFMIQGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPG 121

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4E7|PPID_EMENI Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr6 PE=3 SV=1

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 75/97 (77%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D+ IG+++ GR+  ELF  +VPKTAENFRALCTGE G GK GK LHF GS FHR+I 
Sbjct: 9   VFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIK 68

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           QFMIQGGD T FNGTGGESIYG  F DENF+LK   P
Sbjct: 69  QFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRP 105

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2U0E0|PPID_ASPOR Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cpr6 PE=3 SV=1

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 74/97 (76%), Gaps = 2/97 (2%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D+ IG EK GR+ +EL   +VPKTAENFRALCTGE G GK GK LHF GS FHR+I 
Sbjct: 10  VFFDIQIGNEKTGRIALELV--LVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIK 67

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           QFMIQGGD T FNGTGGESIYG  F DENF+LK   P
Sbjct: 68  QFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDKP 104

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38867|CP19C_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2

 Score =  139 bits (350), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 75/100 (75%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+ IG+ K GR+V+ELF  + P+TA NFRALCTGE G GK GKALH+ GS FHR
Sbjct: 3   NPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHR 62

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGGESIYG  FEDENFKLK   P
Sbjct: 63  IIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGP 102

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P73789|PPI2_SYNY3 Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1251 PE=3 SV=1

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 73/97 (75%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D++IG +  GR+V+ELF  + PKTAENFRALCTGE G GK GK LHF GSHFHR+I 
Sbjct: 5   VFFDITIGSDTAGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVIT 64

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
            FM QGGD T  NGTGGESIYG  F DENF+LK   P
Sbjct: 65  DFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRP 101

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9CR16|PPID_MOUSE Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FH
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFH 74

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           RII +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct: 75  RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6DGG0|PPID_RAT Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus GN=Ppid PE=1 SV=3

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FH
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFH 74

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           RII +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct: 75  RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P26882|PPID_BOVIN Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus GN=PPID PE=1 SV=6

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FH
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFH 74

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           RII +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct: 75  RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52015|CYP7_CAEEL Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 74/97 (76%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D++I  +  GR+V+EL+  IVPKTAENFRALCTGE G GK GK LHF GS FHRIIP
Sbjct: 6   VFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIP 65

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           +FMIQGGD T  NGTGGESIYG  F DENFK K   P
Sbjct: 66  EFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGP 102

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
383853610	376	PREDICTED: peptidyl-prolyl cis-trans iso	0.835	0.946	0.380	2e-60
380026192	375	PREDICTED: peptidyl-prolyl cis-trans iso	0.845	0.96	0.386	2e-59
328789580	375	PREDICTED: peptidyl-prolyl cis-trans iso	0.845	0.96	0.386	6e-59
340710400	376	PREDICTED: peptidyl-prolyl cis-trans iso	0.849	0.962	0.369	9e-59
350415568	377	PREDICTED: peptidyl-prolyl cis-trans iso	0.838	0.946	0.369	1e-58
332375905	361	unknown [Dendroctonus ponderosae]	0.833	0.983	0.307	4e-46
440640802	367	hypothetical protein GMDG_04979 [Geomyce	0.816	0.948	0.297	3e-39
291228525	366	PREDICTED: peptidylprolyl isomerase D-li	0.835	0.972	0.310	1e-38
66810482	354	tetratricopeptide-like helical domain-co	0.812	0.977	0.302	6e-37
307207304	376	40 kDa peptidyl-prolyl cis-trans isomera	0.225	0.255	0.734	2e-35

>gi|383853610|ref|XP_003702315.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Megachile rotundata]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 217/420 (51%), Gaps = 64/420 (15%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N IVFLD++I  EKVGR+VIELFK +VP+T+ENFRALCTGE G G  GK LH+ GS FH+
Sbjct: 15  NPIVFLDIAIETEKVGRIVIELFKDVVPRTSENFRALCTGEKGIGINGKKLHYKGSIFHK 74

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLT 129
           ++PQFMIQGGDI NF+GT GESIYGP FEDENFKL                         
Sbjct: 75  VLPQFMIQGGDIINFDGTSGESIYGPQFEDENFKL------------------------- 109

Query: 130 FTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADL 189
                   S  SG   GL S +   Y  S +  F+ T +     HL   NV         
Sbjct: 110 --------SHSSG---GLLSMVNEGYPNSNSSQFIITIS--ASTHLDGTNVVF------- 149

Query: 190 SILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIF----GC 245
                      G + K  G+     ++ET +   + +    D  + K+ +N       G 
Sbjct: 150 -----------GKVLKGMGVILEVSQVETIKDTPVEKVHIIDCGELKQGQNWGMEESDGT 198

Query: 246 VRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY 305
                    + SY    + K L    +  VI  IK+SGN YF      DA RKYKKA+RY
Sbjct: 199 EDTFTPWPEDWSY--CTDHKGLDYKYIIGVIMKIKDSGNHYFLKKHYVDAGRKYKKALRY 256

Query: 306 IKWYNQSQSKTQQKH--FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 363
            KW  ++            +   A LLN+AAV+LK K Y+  + LC ++L +  NN KAL
Sbjct: 257 YKWMMKTVDVPDHSDTLIMNTKVAILLNLAAVKLKEKNYRDVLKLCTEVLQLNKNNSKAL 316

Query: 364 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 423
           FRR +A + +N ++ GL D +QAL   PN++ IL+E+  V+  M+ +L +E+ +  RMF+
Sbjct: 317 FRRSQAYMGLNEYDLGLADLKQALLESPNNKDILQEMDKVKTVMKKYLAIERASCQRMFK 376

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026192|ref|XP_003696840.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Apis florea]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/422 (38%), Positives = 219/422 (51%), Gaps = 62/422 (14%)

Query: 6   CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGS 65
           CK+ N IVFLD++I  EKVGR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ GS
Sbjct: 12  CKK-NPIVFLDIAIESEKVGRVVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYKGS 70

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMF 125
            FH+++ Q MIQGGDI NFNGT GESIYG  FEDE+F L                     
Sbjct: 71  TFHKVLSQVMIQGGDIINFNGTSGESIYGIKFEDEHFGL--------------------- 109

Query: 126 RMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKI 185
                       +  SG   GL S +   Y  S +  F+ T +     HL   NV   K+
Sbjct: 110 ------------THSSG---GLLSMVNEGYPNSNSSQFIITISATS--HLDNTNVVFGKV 152

Query: 186 EADLS-ILEAKHY--YNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGI 242
              +  +LE       N   +EK   I   + K +   G E           +      +
Sbjct: 153 LKGMGVVLEVSQIKTVNDIPVEKIYIIDCGELKGDQNWGME-----------ENDGTEDV 201

Query: 243 FGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 302
           F    + +  +R +        K L    M +VI+ IK+SGN YF      DA RKYKKA
Sbjct: 202 FTPWPEDWNYSRHI--------KQLDYKYMMEVIKKIKDSGNYYFLRKNYVDAGRKYKKA 253

Query: 303 VRYIKWYNQSQSKTQQKHF-RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 361
           +RY KW  ++   +       +     LLN+AAV+LK K Y+ A+ LC  +L +E NN K
Sbjct: 254 LRYYKWMIKTIDISDSNELIMNIKVTLLLNLAAVKLKEKDYREALKLCSKVLQLEKNNSK 313

Query: 362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 421
           ALFRR +A + +N ++ GL D +QAL   PN++ IL EI  V++ M  +L +EK +  RM
Sbjct: 314 ALFRRSQAHMGLNEYDLGLADLKQALLESPNNKDILLEIDKVKRVMNSYLVIEKASCQRM 373

Query: 422 FQ 423
           F+
Sbjct: 374 FK 375

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789580|ref|XP_003251298.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Apis mellifera]

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 163/422 (38%), Positives = 219/422 (51%), Gaps = 62/422 (14%)

Query: 6   CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGS 65
           CK+ N IVFLD++I  EKVGR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ GS
Sbjct: 12  CKK-NPIVFLDIAIESEKVGRVVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYKGS 70

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMF 125
            FH+++ Q MIQGGDI NFNGT GESIYG  FEDE+F L                     
Sbjct: 71  TFHKVLSQVMIQGGDIINFNGTSGESIYGIKFEDEHFGL--------------------- 109

Query: 126 RMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKI 185
                       +  SG   GL S +   Y  S +  F+ T +     HL   NV   K+
Sbjct: 110 ------------THSSG---GLLSMVNEGYPNSNSSQFIITISATS--HLDNTNVVFGKV 152

Query: 186 EADLS-ILEAKHY--YNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGI 242
              +  +LE       N   +EK   I   + K +   G E           +      +
Sbjct: 153 LKGMGVVLEVSQIRTVNDIPVEKIYIIDCGELKGDQNWGME-----------ENDGTEDV 201

Query: 243 FGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 302
           F    + +  +R +        K L    M +VI+ IK+SGN YF      DA RKYKKA
Sbjct: 202 FTAWPEDWNYSRHI--------KQLDYKYMMEVIKKIKDSGNYYFLRKNYVDAGRKYKKA 253

Query: 303 VRYIKWYNQSQSKTQ-QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 361
           +RY KW  ++   +   +   +     LLN+AAV+LK K Y+ A+ LC  +L +E NN K
Sbjct: 254 LRYYKWMIKTIDVSNCNELMMNIKVTLLLNLAAVKLKEKDYREALKLCSKVLQLEKNNSK 313

Query: 362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM 421
           ALFRR +A + +N +  GL D +QAL   PN++ IL EI  V++ M  +L +EK +  RM
Sbjct: 314 ALFRRSQAHMGLNEYNLGLADLKQALLESPNNKDILLEIDKVKRVMNSYLVIEKASCQRM 373

Query: 422 FQ 423
           F+
Sbjct: 374 FK 375

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710400|ref|XP_003393779.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Bombus terrestris]

 Score =  233 bits (595), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 225/425 (52%), Gaps = 63/425 (14%)

Query: 4   SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFT 63
           S CK+ N IVFLD++I  EK GR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ 
Sbjct: 10  SNCKK-NPIVFLDIAIESEKAGRIVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYK 68

Query: 64  GSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKA 123
           GS FH+++ QFM+QGGDI NFNGT GESIYG  FEDENF                     
Sbjct: 69  GSIFHKVLSQFMVQGGDIINFNGTSGESIYGTQFEDENF--------------------- 107

Query: 124 MFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLR 183
                       + S  SG   GL S +   Y  S +  F+ T +     HL   NV   
Sbjct: 108 ------------VLSHSSG---GLLSMVNEGYPNSNSSQFIITVS--ATTHLDNTNVVFG 150

Query: 184 KIEADLSILEAKHYYNQGALEKKRGITEHK---KKLETGRGKEISRKQYRDLVKKKKKKN 240
           K+   + ++          LE  R  T      +K+      E+   Q  +L +    ++
Sbjct: 151 KVLKGMGVV----------LEVSRAKTIQDVPVQKIHIFDCGELKHNQNWELEENDGTED 200

Query: 241 GIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYK 300
            +F    + +  ++ +       D   ++    DVI+ IK+SGN YF      DA RKYK
Sbjct: 201 -VFTPWPEDWDYSKNIK----RQDYKYIM----DVIQKIKDSGNYYFLRKNYVDAGRKYK 251

Query: 301 KAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358
           KA+RY KW  ++     +  +   +     LLN+AAV+LK K+++ A+ LC ++L +  N
Sbjct: 252 KALRYYKWMMKTVDVPDSSNESIVNTKVTLLLNLAAVKLKQKSHREALKLCSEVLQINQN 311

Query: 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 418
           N KALFRR +A + +N ++ GL D +QAL   PN++ IL EI  V++ M  +L +E+ + 
Sbjct: 312 NSKALFRRSQAYMGLNEYDLGLADLQQALLESPNNKDILLEIDKVKRVMNSYLVIERASC 371

Query: 419 ARMFQ 423
            +MF+
Sbjct: 372 QKMFK 376

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415568|ref|XP_003490682.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Bombus impatiens]

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 155/419 (36%), Positives = 221/419 (52%), Gaps = 62/419 (14%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N IVFLD++I  EK GR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ GS FH+
Sbjct: 16  NPIVFLDIAIESEKAGRIVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYKGSIFHK 75

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLT 129
           ++ QFM+QGGDI NFNGT GESIYG  FEDENF                           
Sbjct: 76  VLSQFMVQGGDIINFNGTSGESIYGTQFEDENF--------------------------- 108

Query: 130 FTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADL 189
                 + S  SG   GL S +   Y  S +  F+ T +     HL   NV   K+   +
Sbjct: 109 ------VLSHSSG---GLLSMVNEGYPNSNSSQFIITVS--ATTHLDNTNVVFGKVLKGM 157

Query: 190 SILEAKHYYNQGALEKKRGITEHK---KKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV 246
            ++          LE  R  T      +K+      E+   Q  +L +    ++ +F   
Sbjct: 158 GVV----------LEVSRAKTIQDVPVQKIHIFDCGELKHNQNWELEENDGTED-VFTPW 206

Query: 247 RQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI 306
            + +  ++ +       D   ++    DVI+ IK+SGN YF      DA RKYKKA+RY 
Sbjct: 207 PEDWDYSKNIK----RQDYKYIM----DVIQKIKDSGNYYFLRKNYVDAGRKYKKALRYY 258

Query: 307 KWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF 364
           KW  ++     +  +   +     LLN+AAV+LK K+++ A+ LC ++L +  NN KALF
Sbjct: 259 KWMMKTVDVPDSSNESIVNTKVTLLLNLAAVKLKQKSHREALKLCSEVLQINQNNSKALF 318

Query: 365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 423
           RR +A + +N ++ GL D +QAL   PN++ IL EI  V+K M  +L +E+ +  +MF+
Sbjct: 319 RRSQAYMGLNEYDLGLADLQQALLESPNNKDILLEIDKVKKVMNSYLVIERASCQKMFK 377

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375905|gb|AEE63093.1| unknown [Dendroctonus ponderosae]

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/419 (30%), Positives = 202/419 (48%), Gaps = 64/419 (15%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
           +G+  VFLD +  +   GR++I+LF  + PKTAENFR LCTGE G G+LGK L++ GS  
Sbjct: 3   KGDCFVFLDFAFNQVPAGRVIIKLFLDVAPKTAENFRCLCTGEKGMGQLGKLLYYKGSRM 62

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRM 127
           HR++P  M+QGGDI N +GT G+SIYG  F  E  ++     ++  PG+           
Sbjct: 63  HRVVPLCMVQGGDIVNGDGTSGDSIYGEYFPSEAREV-----EHTEPGM----------- 106

Query: 128 LTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEA 187
                          +GL + S+   S QF  T       T  C  HL   NV   K+  
Sbjct: 107 ---------------VGLSIDSSGRNSSQFYIT-------TQPCP-HLDDQNVVCGKVVK 143

Query: 188 DLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR 247
            L +++               ++E  ++ +  +G  +       +    + K G   C+ 
Sbjct: 144 GLDVIQ--------------DMSEIPRENDIPQGDIV-------ICDCGELKPGEPWCLE 182

Query: 248 QGFGVAREVSYVEAENDKPLVLNQ--MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY 305
           +  G A    Y    ND    +++  +  VIR I  SG+ ++      DA+RKYKK +RY
Sbjct: 183 ENDGTAD--VYPPWPNDWNGSVDEHLLTGVIRDINGSGHIFYHKQSYQDAERKYKKVLRY 240

Query: 306 IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365
           I W+ +  SK     F  +    LLN+ AV+LK       I    +++   P+N KA +R
Sbjct: 241 IDWFIEKSSKRADNSFMEFRYNVLLNLCAVRLKLNKNAEVIQHSSEVIAHNPDNGKAFYR 300

Query: 366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 424
           R  A++++  ++  LQD + A  L PND+ I       +++ + +LN EK+ Y+R F N
Sbjct: 301 RACAKLALKEYDGALQDLKIAYKLHPNDRSIRNTFEAAKRKRQLYLNKEKLFYSRAFNN 359

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|440640802|gb|ELR10721.1| hypothetical protein GMDG_04979 [Geomyces destructans 20631-21]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 187/427 (43%), Gaps = 79/427 (18%)

Query: 12  IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRII 71
           +V+ D+SIG + +GR++  L+  IVP TAENFR+LCTGE G GK GK L + GS FHR+I
Sbjct: 5   LVYFDISIGSKPMGRIIFTLYSSIVPLTAENFRSLCTGEKGVGKSGKPLSYAGSTFHRVI 64

Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFT 131
            QFMIQGGD T  NGTGGESIYG  F DENF++K   P                      
Sbjct: 65  KQFMIQGGDFTAGNGTGGESIYGEKFADENFEIKHTKP---------------------- 102

Query: 132 SMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSI 191
            ++ + + G G          GS  F  TV            HL   +V   ++ A  SI
Sbjct: 103 FLLSMANAGPGTN--------GSQFFITTVP---------TPHLDDKHVVFGEVVAGKSI 145

Query: 192 L-EAKHYYNQGALEKKRGIT-----EHKKKLETGRGK--EISRKQYRDLVKKKKKKNGIF 243
           + + ++   QG+ +  + +T     E     E G  K  + +   Y D  +  K  +  F
Sbjct: 146 VRQIENLPTQGSDKPAKDVTITACGELPADYEVGSSKKADATGDAYEDFPEDAKTGDNEF 205

Query: 244 GCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAV 303
                                      ++  +   +K  GN  FK   +     KY+K +
Sbjct: 206 SAA------------------------EIVKIASALKEYGNTAFKAGNLQLGLDKYQKGL 241

Query: 304 RYI-------KWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 356
           RY+          +  ++  +Q  F  Y  +ALL+   + L   A K A    +   + +
Sbjct: 242 RYLNEDPDLDSASDSDKAALRQLRFTLYSNSALLSN-KLSLFPDAAKSATFALEVPSITD 300

Query: 357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 416
               KAL+RR  A V M + E  L+D E A  L+P D  ++KE+  V+ +       EK 
Sbjct: 301 VEKAKALYRRALASVGMKDDEAALKDLEAAKALVPGDAAVVKELGAVKTRAAERARKEKA 360

Query: 417 TYARMFQ 423
            Y + F 
Sbjct: 361 AYGKFFD 367

Source: Geomyces destructans 20631-21

Species: Geomyces destructans

Genus: Geomyces

Class: Leotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|291228525|ref|XP_002734227.1| PREDICTED: peptidylprolyl isomerase D-like [Saccoglossus kowalevskii]

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 184/419 (43%), Gaps = 63/419 (15%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N   F DVSI  +K GRM+ ELF  +VPKTAENFRALCTGE G G  G  LH+    FHR
Sbjct: 7   NPRCFFDVSIDGQKCGRMIFELFADVVPKTAENFRALCTGEKGVGASGVPLHYKQCTFHR 66

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLT 129
           II  FMIQGGD T  +GTGGESIYG  FEDENF +K     +  PG+             
Sbjct: 67  IIKSFMIQGGDFTKHDGTGGESIYGEKFEDENFNIK-----HDIPGL------------- 108

Query: 130 FTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADL 189
                        L    A       QF     F+ T                       
Sbjct: 109 -------------LSCANAGPNTNGSQF-----FITTVP--------------------C 130

Query: 190 SILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQG 249
             L+ KH    G L K  G+    + +ET + K        D  +    ++G+  CV  G
Sbjct: 131 PHLDGKHVVF-GKLLKGIGVLRRLENVETVQDKPSIACIIEDCGEIPAGEDGV-TCVDDG 188

Query: 250 FGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY 309
            G      Y E  +     L ++ +V   IK  GN+ FK      A+ KY KA+RY+++ 
Sbjct: 189 TGDTY-ADYPEDSDVGTKDLQKVMEVAEFIKQIGNKLFKEQSYEKAKDKYLKAIRYMEYL 247

Query: 310 NQSQ----SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365
              +    +  Q++           N +   LK   +++A+   +  L ++P + KA FR
Sbjct: 248 EDGKPTDLTAEQEEKVLGVVLPMYNNASFCCLKLNQHEQALENAEKALDVDPKSAKAYFR 307

Query: 366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 424
           + +A  +MN  E  +    +A  L P+D+ I  E+  V+  +      E+  YA+MF +
Sbjct: 308 KAQALTAMNRHEDAMPQLLEAQKLQPSDKGIRNELMKVKNILEERKKKERAVYAKMFSS 366

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|66810482|ref|XP_638951.1| tetratricopeptide-like helical domain-containing protein [Dictyostelium discoideum AX4] gi|60467577|gb|EAL65598.1| tetratricopeptide-like helical domain-containing protein [Dictyostelium discoideum AX4]

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 189/417 (45%), Gaps = 71/417 (17%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  V+ D+ IG  KVGR+V+ELF    PKTAENFRALCTGE G GK GK L + GS FHR
Sbjct: 5   NKRVYFDIEIGGNKVGRIVMELFFDKTPKTAENFRALCTGEKGIGKNGKPLSYKGSGFHR 64

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLT 129
           +I QFMIQGGD T  NGTGGESIYG  F+DENF  K                       T
Sbjct: 65  VIKQFMIQGGDFTAGNGTGGESIYGEKFDDENFIAK----------------------HT 102

Query: 130 FTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADL 189
              ++ + + G G          GS  F  T+S           HL   +V   K+   +
Sbjct: 103 KAGLLSMANSGPGTN--------GSQFFITTIS---------TPHLDNKHVVFGKVIKGM 145

Query: 190 SILEAKHYYNQGALEK--KRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR 247
           S++        GA +K  K  I     +L+ G    +  K   D  +   + + + G   
Sbjct: 146 SVVREIESQPTGANDKPIKDCIIMDCGELKEGEDDGVPEKTGDDKWEDYPQDDNVEG--- 202

Query: 248 QGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK 307
                          N+  L + +       IKN GN+YFK  +  +A  KY KA+RY+ 
Sbjct: 203 ---------------NEANLKVGE------AIKNIGNDYFKQGKSLEAIAKYNKALRYLD 241

Query: 308 WYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367
             +           ++  T    NM+   LK K    A+      L + PN++KALFR+ 
Sbjct: 242 CCSNIDG------LKNVQTICYNNMSQCYLKEKKGSNALVAAKKALELSPNDIKALFRKA 295

Query: 368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 424
           +A   M  +++ ++D+++ ++    ++    E+  ++K  +         Y+++F +
Sbjct: 296 KALSLMEEYDEAIKDFQKIIETDSENKDAKLELERIKKLQKAKDLKSAKAYSKLFSD 352

Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|307207304|gb|EFN85054.1| 40 kDa peptidyl-prolyl cis-trans isomerase [Harpegnathos saltator]

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/98 (73%), Positives = 80/98 (81%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
           + N IVFLD+ +G EKVGR+VIELFK IVP+TAENFRALCTGE G G   K LH+ G  F
Sbjct: 13  DTNPIVFLDIVVGPEKVGRIVIELFKDIVPRTAENFRALCTGEKGSGSNAKRLHYKGCVF 72

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           H+ IPQFMIQGGDI NFNGT GESIYGP FEDENF+LK
Sbjct: 73  HKSIPQFMIQGGDIVNFNGTSGESIYGPYFEDENFQLK 110

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
ZFIN|ZDB-GENE-040625-34	371	ppid "peptidylprolyl isomerase	0.218	0.250	0.723	2e-59
UNIPROTKB|P26882	370	PPID "Peptidyl-prolyl cis-tran	0.218	0.251	0.723	2.7e-56
MGI|MGI:1914988	370	Ppid "peptidylprolyl isomerase	0.218	0.251	0.723	2.3e-52
RGD|1303174	370	Ppid "peptidylprolyl isomerase	0.218	0.251	0.723	7.7e-52
UNIPROTKB|E1BXG9	370	PPID "Uncharacterized protein"	0.215	0.248	0.709	3.6e-51
UNIPROTKB|F1RTY6	370	PPID "Uncharacterized protein"	0.218	0.251	0.723	8.7e-51
TAIR|locus:2044596	361	SQN "SQUINT" [Arabidopsis thal	0.215	0.254	0.645	1.1e-50
UNIPROTKB|Q08752	370	PPID "Peptidyl-prolyl cis-tran	0.218	0.251	0.723	1.4e-50
UNIPROTKB|E2QTC7	372	PPID "Uncharacterized protein"	0.227	0.260	0.704	1.8e-50
FB|FBgn0036020	383	CG8336 [Drosophila melanogaste	0.230	0.255	0.612	1.4e-48

ZFIN|ZDB-GENE-040625-34 ppid "peptidylprolyl isomerase D" [Danio rerio (taxid:7955)]

 Score = 341 (125.1 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
 Identities = 68/94 (72%), Positives = 72/94 (76%)

Query:    13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRII 71
             VF DV IG E+VGR+V ELF  +VPKTAENFRALCTGE G GK  GK LHF G  FHRII
Sbjct:    18 VFFDVEIGAERVGRVVFELFADVVPKTAENFRALCTGEKGVGKSTGKPLHFKGCPFHRII 77

Query:    72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
               FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    78 KSFMIQGGDFSNQNGTGGESIYGDKFEDENFHYK 111

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|P26882 PPID "Peptidyl-prolyl cis-trans isomerase D" [Bos taurus (taxid:9913)]

 Score = 337 (123.7 bits), Expect = 2.7e-56, Sum P(3) = 2.7e-56
 Identities = 68/94 (72%), Positives = 73/94 (77%)

Query:    13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
             VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FHRII
Sbjct:    18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII 77

Query:    72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
              +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0034389 "lipid particle organization" evidence=ISS

GO:0071492 "cellular response to UV-A" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0006457 "protein folding" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

MGI|MGI:1914988 Ppid "peptidylprolyl isomerase D (cyclophilin D)" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 68/94 (72%), Positives = 73/94 (77%)

Query:    13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
             VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FHRII
Sbjct:    18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRII 77

Query:    72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
              +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005528 "FK506 binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

GO:0071492 "cellular response to UV-A" evidence=ISO

RGD|1303174 Ppid "peptidylprolyl isomerase D" [Rattus norvegicus (taxid:10116)]

 Score = 339 (124.4 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 68/94 (72%), Positives = 73/94 (77%)

Query:    13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
             VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FHRII
Sbjct:    18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRII 77

Query:    72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
              +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0051881 "regulation of mitochondrial membrane potential" evidence=IMP

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0071492 "cellular response to UV-A" evidence=ISO;ISS

UNIPROTKB|E1BXG9 PPID "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 333 (122.3 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
 Identities = 66/93 (70%), Positives = 71/93 (76%)

Query:    14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRIIP 72
             F DV IG E+VGR+V ELF  IVPKTAENFRALCTGE G G   GK LH+ G  FHRII 
Sbjct:    19 FFDVDIGGERVGRIVFELFADIVPKTAENFRALCTGEKGTGATTGKPLHYKGCPFHRIIK 78

Query:    73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
             QFM+QGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    79 QFMVQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

UNIPROTKB|F1RTY6 PPID "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 337 (123.7 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 68/94 (72%), Positives = 73/94 (77%)

Query:    13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
             VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FHRII
Sbjct:    18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII 77

Query:    72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
              +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

TAIR|locus:2044596 SQN "SQUINT" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
 Identities = 60/93 (64%), Positives = 72/93 (77%)

Query:    14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSHFHRIIP 72
             F+D+SIG E  GR+VIEL+  +VPKTAENFR LCTGE G G   G  LH+ G+ FHR+I 
Sbjct:     7 FMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIK 66

Query:    73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
              FMIQGGDI+  +GTGGESIYG  F+DENF+LK
Sbjct:    67 GFMIQGGDISANDGTGGESIYGLKFDDENFELK 99

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0010050 "vegetative phase change" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q08752 PPID "Peptidyl-prolyl cis-trans isomerase D" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 68/94 (72%), Positives = 73/94 (77%)

Query:    13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
             VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FHRII
Sbjct:    18 VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRII 77

Query:    72 PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
              +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    78 KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

GO:0006915 "apoptotic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0019076 "viral release from host cell" evidence=TAS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0071492 "cellular response to UV-A" evidence=IMP

GO:0034389 "lipid particle organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|E2QTC7 PPID "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 69/98 (70%), Positives = 75/98 (76%)

Query:     9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHF 67
             GN  VF DV+I  E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  F
Sbjct:    14 GNPRVFFDVAIAGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query:    68 HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
             HRII +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct:    74 HRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYK 111

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

FB|FBgn0036020 CG8336 [Drosophila melanogaster (taxid:7227)]

 Score = 325 (119.5 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query:     7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSH 66
             K  N +V+LD+SIG+E  GRM+IEL K +VPKTAENFRALCTGE G G LGK LH+ G+ 
Sbjct:    11 KSTNPLVYLDISIGKEDAGRMIIELRKDVVPKTAENFRALCTGECGIGTLGKPLHYKGTK 70

Query:    67 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKL 104
             FH+I   F++Q GD+   +G+ GESIYGP F+DENF+L
Sbjct:    71 FHKIKRVFVVQSGDVVKNDGSSGESIYGPVFDDENFEL 108

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52009	CYP1_CAEEL	5, ., 2, ., 1, ., 8	0.7216	0.2276	0.5052	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.766
4th Layer	5.2.1.8	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	426
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-53
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	6e-44
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	2e-32
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	8e-24
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	4e-22
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	1e-18
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	4e-18
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-16
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	4e-15
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	8e-15
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	2e-14
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	2e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-08
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	3e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-07
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	3e-06
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	1e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	2e-05
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	3e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  175 bits (445), Expect = 2e-53
 Identities = 64/94 (68%), Positives = 72/94 (76%), Gaps = 2/94 (2%)

Query: 12  IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRII 71
            VF D++IG E  GR+V+ELF  +VPKTAENFRALCTGE  KGK GK   + GS FHR+I
Sbjct: 2   KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGE--KGKGGKPFGYKGSTFHRVI 59

Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           P FMIQGGD T  NGTGG+SIYG  F DENFKLK
Sbjct: 60  PDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLK 93

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  151 bits (382), Expect = 6e-44
 Identities = 65/97 (67%), Positives = 70/97 (72%), Gaps = 1/97 (1%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D+SI     GR+V ELF  + PKTAENFRALC G+   G  GK LH+ GS FHRIIP
Sbjct: 18  VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGD-KVGSSGKNLHYKGSIFHRIIP 76

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           QFM QGGDITN NGTGGESIYG  F DENFKLK   P
Sbjct: 77  QFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQP 113

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  121 bits (304), Expect = 2e-32
 Identities = 53/96 (55%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N +VF DV+IG    GR+ +ELF  I PKTAENFR  CTGE+ K   G    + G  FHR
Sbjct: 18  NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKA--GLPQGYKGCQFHR 75

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           +I  FMIQGGD    +GTG  SIYG  FEDENF  K
Sbjct: 76  VIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAK 111

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 96.2 bits (240), Expect = 8e-24
 Identities = 39/87 (44%), Positives = 48/87 (55%), Gaps = 12/87 (13%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
            GR+VIEL+    PKT ENF +L  G +          + G+ FHR+IP FMIQGGD T 
Sbjct: 6   KGRIVIELYGDEAPKTVENFLSLARGGF----------YDGTTFHRVIPGFMIQGGDPTG 55

Query: 84  FNGTGGESIYGPCFEDENFKLKGIYPK 110
             G G  S  G  F DENF LK  + +
Sbjct: 56  TGGGG--SGPGYKFPDENFPLKYHHRR 80

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 91.9 bits (229), Expect = 4e-22
 Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 13/88 (14%)

Query: 19  IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQG 78
           I E   G + IEL+    PKT  NF  L    +          + G+ FHR+IP FMIQG
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLVKEGF----------YDGTIFHRVIPGFMIQG 52

Query: 79  GDITNFNGTGGESIYGPCFEDENFKLKG 106
           GD T  +GTGG       F+DENF L G
Sbjct: 53  GDPTGGDGTGGPGPP---FKDENFALNG 77

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 18/92 (19%)

Query: 14  FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQ 73
           FLD++      GR+VIELF    PKT ENF +LC          K   + G+ FHR+IP 
Sbjct: 1   FLDITTNL---GRIVIELFGDEAPKTVENFLSLC----------KKGFYDGTIFHRVIPG 47

Query: 74  FMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           FMIQGGD T     G  SI      DE     
Sbjct: 48  FMIQGGDPTGPGTGGKRSI-----PDEFVSKL 74

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score = 80.6 bits (199), Expect = 4e-18
 Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G + IELF    PK  ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 9   LGDIKIELFCDDCPKACENFLALCASGY----------YNGCIFHRNIKGFMVQTGDPTG 58

Query: 84  FNGTGGESIYGPCFEDE 100
             G GGESI+G  FEDE
Sbjct: 59  -TGKGGESIWGKKFEDE 74

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 74.9 bits (184), Expect = 4e-16
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 17/95 (17%)

Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
           E  +G + +EL+ +  PKT +NF  L    Y          + G+ FHR+I  FMIQGGD
Sbjct: 3   ETTMGEITLELYWNHAPKTCKNFYELAKRGY----------YNGTIFHRLIKDFMIQGGD 52

Query: 81  ITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPG 115
            T   G GG SIYG  FEDE      I+P+ K+ G
Sbjct: 53  PTG-TGRGGASIYGKKFEDE------IHPELKHTG 80

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
            G + IEL+    PK   NF  LC   Y          +  + FHR++P F+IQGGD T 
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCLEGY----------YDNTIFHRVVPGFIIQGGDPTG 63

Query: 84  FNGTGGESIYGPCFEDE 100
             GTGGESIYG  F+DE
Sbjct: 64  -TGTGGESIYGEPFKDE 79

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score = 71.3 bits (175), Expect = 8e-15
 Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
           G + +EL     PK  ENF  LC   Y          + G+ FHR I  FMIQGGD T  
Sbjct: 9   GDLNLELHCDKAPKACENFIKLCKKGY----------YDGTIFHRSIRNFMIQGGDPTG- 57

Query: 85  NGTGGESIYGPCFEDE 100
            G GGESI+G  F+DE
Sbjct: 58  TGRGGESIWGKPFKDE 73

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 11/76 (14%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
           G + I LF    PKT ENF       Y          +  + FHR+I  FMIQ GD T  
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHARNGY----------YNNTIFHRVIKGFMIQTGDPTG- 55

Query: 85  NGTGGESIYGPCFEDE 100
           +GTGGESI+G  FEDE
Sbjct: 56  DGTGGESIWGKEFEDE 71

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 6/93 (6%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYG-KGKLGKALHFTGSHFHRII 71
            FLD+SIG+   GR+V ELF+ +VP+T ENFRAL TG  G     G  L +  +  H + 
Sbjct: 55  AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVD 114

Query: 72  PQF-MIQGGDITNFNGTGGESIYGPCFEDENFK 103
               +I  G++ +FN     S  G    DE ++
Sbjct: 115 RNNNIIVLGELDSFN----VSSTGTPIADEGYR 143

Length = 249

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343
                L  ++     Y +A+ Y   Y ++               A  N+AA   K   Y+
Sbjct: 1   EALLNLGNLYYKLGDYDEALEY---YEKALEL------DPDNADAYYNLAAAYYKLGKYE 51

Query: 344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
            A+   +  L ++P+N KA +  G A   +  +E+ L+ YE+AL+L PN
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 21/88 (23%), Positives = 43/88 (48%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
           ALLN+  +  K   Y  A+   +  L ++P+N  A +    A   +  +E+ L+DYE+AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 388 DLLPNDQQILKEIAFVRKQMRHHLNLEK 415
           +L P++ +    +     ++  +    +
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Length = 100

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 10/58 (17%)

Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDIT 82
          G +V+EL+    P T ENF A       KG       +  + FHR+I  F+IQGG  T
Sbjct: 7  GDIVVELYDDKAPITVENFLAYVR----KG------FYDNTIFHRVISGFVIQGGGFT 54

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQA 386
           AL N+     K   Y  AI   +  L ++P+N +A +    A + +  ++E+ L+D E+A
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 387 LDLLP 391
           L+L P
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
           G  Y  L ++  AQ+ Y           Q+ +   +         A L +A + L    +
Sbjct: 132 GLAYLGLGQLELAQKSY----------EQALAIDPR------SLYAKLGLAQLALAENRF 175

Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
             A  L D++L  +P NV AL  +G   +S+ N E  L  Y +A+ L PN+  +L
Sbjct: 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 160 TVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAK 195
           TV FLN F+  CE  L      L+++E  LS+LEAK
Sbjct: 8   TVQFLNRFSAVCESKLVEAERSLQQLETTLSLLEAK 43

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
           + ++RA+ + + +LL+ P++      RG     +  F+  L D E  L+L P+     + 
Sbjct: 9   EDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAPDAER- 67

Query: 400 IAFVRKQMR 408
              +R+Q+ 
Sbjct: 68  ---IREQLA 73

Length = 73

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 23/64 (35%)

Query: 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
           L +A   L+   Y  A+   +  L   P   +AL   G A +      +       AL  
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 390 LPND 393
            P+D
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
          E  +G +VI+LF    P    NF  LC  +Y          +    F+ +   F+ Q GD
Sbjct: 3  ETTLGDLVIDLFTDECPLACLNFLKLCKLKY----------YNFCLFYNVQKDFIAQTGD 52

Query: 81 ITNFNGTGGESIYGP 95
           T   G GGESIY  
Sbjct: 53 PTG-TGAGGESIYSQ 66

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
           Y  L R  DA   Y+ A+R     +  +              AL   A  Q+  K    A
Sbjct: 166 YMALGRASDALLAYRNALRLAG--DNPEILLG-------LAEALYYQAGQQMTAK----A 212

Query: 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----QQILKEIA 401
             L    L ++P N++AL     A     ++ +    ++  LDLLP D      I + IA
Sbjct: 213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272

Query: 402 FVRKQMR 408
               Q  
Sbjct: 273 RALAQRS 279

Length = 287

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
            KAL+  G A + +  +++ L+ YE+AL+L PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
            +AL+  G A + + ++++ L+ YE+AL+L PN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG 79
          G +VI+ F    P+T +NF   C   +          +  + FHR+I  FMIQGG
Sbjct: 9  GDIVIKTFDDKAPETVKNFLDYCREGF----------YNNTIFHRVINGFMIQGG 53

Length = 164

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316
             + +  +  L L      I    N+      L  +     ++++A        +  +  
Sbjct: 201 DLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA--------EKHADA 252

Query: 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
             K   +   A  L  A V  + K Y+ A     D L   P  + AL   G ++  + N 
Sbjct: 253 LLKKAPNSPLAHYLK-ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNL 311

Query: 377 EQGLQDYEQALDLLPNDQQILKEIA 401
           EQ  Q   Q L   PN  Q  + +A
Sbjct: 312 EQAYQYLNQILKYAPNSHQARRLLA 336

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 17/80 (21%), Positives = 37/80 (46%)

Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
            L +A   L     K+A+ + ++     P++ +A    GRAQ++  +  + +  +++ L 
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

Query: 389 LLPNDQQILKEIAFVRKQMR 408
           L P+    L  +A     M+
Sbjct: 630 LQPDSALALLLLADAYAVMK 649

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.8 bits (91), Expect = 0.002
 Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 8/147 (5%)

Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 328
             +  ++   +         L  + +A  +Y++A+  ++           K        A
Sbjct: 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL--------KLNPDDDAEA 204

Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
           LLN+  + LK   Y+ A+   +  L ++P+N +AL+      + +  +E+ L+  E+AL+
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264

Query: 389 LLPNDQQILKEIAFVRKQMRHHLNLEK 415
           L P+   +   +  +  +    L    
Sbjct: 265 LDPDLYNLGLALLLLLAEALELLEKAD 291

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
KOG0546|consensus	372		100.0
KOG0880|consensus	217		100.0
KOG0879|consensus	177		100.0
KOG0881|consensus	164		100.0
KOG0111|consensus	298		100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
KOG0883|consensus	518		100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
KOG0882|consensus	558		100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
KOG0884|consensus	161		100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0865|consensus	167		100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	99.98
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	99.98
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	99.97
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	99.97
KOG0885|consensus	439		99.96
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	99.96
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	99.94
KOG0415|consensus	479		99.94
KOG0543|consensus	397		99.85
KOG0553|consensus	304		99.82
KOG4234|consensus	271		99.67
KOG0545|consensus	329		99.63
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
KOG0548|consensus	539		99.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.57
KOG4648|consensus	536		99.55
KOG0547|consensus	606		99.54
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.52
KOG4626|consensus	966		99.51
KOG0550|consensus	486		99.49
KOG4626|consensus	966		99.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.47
KOG0548|consensus	539		99.43
KOG1126|consensus	638		99.42
PRK11189	296	lipoprotein NlpI; Provisional	99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.39
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.35
KOG1155|consensus	559		99.35
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.31
KOG1126|consensus	638		99.3
PRK15359	144	type III secretion system chaperone protein SscB;	99.29
KOG0551|consensus	390		99.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.28
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.27
KOG1155|consensus	559		99.26
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.24
PRK12370	553	invasion protein regulator; Provisional	99.23
KOG0376|consensus	476		99.23
PRK12370	553	invasion protein regulator; Provisional	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.22
KOG4642|consensus	284		99.21
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.2
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.18
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
PRK15331	165	chaperone protein SicA; Provisional	99.17
KOG0547|consensus	606		99.16
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.15
PRK11189	296	lipoprotein NlpI; Provisional	99.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.14
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.14
KOG0624|consensus	504		99.14
KOG1125|consensus	579		99.13
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.13
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.1
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.1
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.1
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.08
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.06
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.06
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.05
PLN02789	320	farnesyltranstransferase	99.05
KOG0624|consensus	504		99.04
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.03
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.02
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.02
KOG2076|consensus	895		99.0
KOG1173|consensus	611		99.0
PLN02789	320	farnesyltranstransferase	99.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.99
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.99
KOG1125|consensus	579		98.99
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.99
KOG0553|consensus	304		98.96
KOG0550|consensus	486		98.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.93
PRK10803	263	tol-pal system protein YbgF; Provisional	98.92
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.9
KOG4555|consensus	175		98.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.89
PF13371	73	TPR_9: Tetratricopeptide repeat	98.88
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.86
KOG4162|consensus	799		98.86
KOG2003|consensus	840		98.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.85
KOG1128|consensus	777		98.81
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.8
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.79
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.79
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.79
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.77
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.76
PF13512	142	TPR_18: Tetratricopeptide repeat	98.75
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.75
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.74
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.71
PRK14574	822	hmsH outer membrane protein; Provisional	98.7
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.66
PF13371	73	TPR_9: Tetratricopeptide repeat	98.65
KOG1308|consensus	377		98.63
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.63
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.62
KOG2002|consensus	1018		98.62
PRK11906	458	transcriptional regulator; Provisional	98.62
KOG1129|consensus	478		98.56
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.56
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.55
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.54
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.53
KOG1173|consensus	611		98.53
KOG3060|consensus	289		98.53
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.52
KOG2076|consensus	895		98.51
KOG4162|consensus	799		98.5
KOG1840|consensus	508		98.49
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.49
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.48
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.47
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.47
KOG2002|consensus	1018		98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.46
PRK14574	822	hmsH outer membrane protein; Provisional	98.45
KOG1128|consensus	777		98.45
PF12688	120	TPR_5: Tetratrico peptide repeat	98.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.43
PF12688	120	TPR_5: Tetratrico peptide repeat	98.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.41
KOG1156|consensus	700		98.41
KOG1310|consensus	758		98.38
KOG1840|consensus	508		98.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.34
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.34
KOG3060|consensus	289		98.32
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.31
PRK10803	263	tol-pal system protein YbgF; Provisional	98.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.28
PRK15331	165	chaperone protein SicA; Provisional	98.25
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.22
KOG1174|consensus	564		98.21
KOG0543|consensus	397		98.21
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.2
KOG2003|consensus	840		98.19
KOG1129|consensus	478		98.18
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.17
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.16
PRK11906	458	transcriptional regulator; Provisional	98.12
KOG1127|consensus	1238		98.11
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.11
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.11
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.08
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.07
KOG1156|consensus	700		98.06
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.06
KOG4648|consensus	536		98.05
KOG0495|consensus	913		98.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.99
KOG4555|consensus	175		97.99
KOG1174|consensus	564		97.98
KOG4234|consensus	271		97.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.97
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.97
PF13428	44	TPR_14: Tetratricopeptide repeat	97.97
PF13428	44	TPR_14: Tetratricopeptide repeat	97.97
PF13431	34	TPR_17: Tetratricopeptide repeat	97.96
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.96
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.94
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.89
KOG1130|consensus	639		97.88
KOG0495|consensus	913		97.85
KOG1127|consensus	1238		97.81
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.8
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.76
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.75
KOG3785|consensus	557		97.73
KOG4642|consensus	284		97.73
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.71
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.71
KOG1130|consensus	639		97.62
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.59
KOG3785|consensus	557		97.57
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.53
PRK10941	269	hypothetical protein; Provisional	97.52
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.51
PF13431	34	TPR_17: Tetratricopeptide repeat	97.49
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.46
KOG2376|consensus	652		97.43
KOG0551|consensus	390		97.41
KOG1941|consensus	518		97.41
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.39
PF13512	142	TPR_18: Tetratricopeptide repeat	97.37
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.35
KOG2376|consensus	652		97.31
KOG2796|consensus	366		97.28
KOG4151|consensus	748		97.26
KOG2053|consensus	932		97.2
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.19
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.16
KOG2796|consensus	366		97.15
KOG0376|consensus	476		97.14
KOG4340|consensus	459		97.09
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.07
KOG3824|consensus	472		97.01
PLN03218	1060	maturation of RBCL 1; Provisional	97.01
PRK04841	903	transcriptional regulator MalT; Provisional	96.9
KOG1941|consensus	518		96.89
KOG4507|consensus	886		96.88
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.88
KOG3364|consensus	149		96.86
KOG3081|consensus	299		96.82
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.82
KOG1586|consensus	288		96.81
KOG1586|consensus	288		96.79
KOG4814|consensus	872		96.77
PLN03077	857	Protein ECB2; Provisional	96.77
PLN03218	1060	maturation of RBCL 1; Provisional	96.74
KOG1915|consensus	677		96.74
KOG1308|consensus	377		96.74
KOG0545|consensus	329		96.72
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.7
KOG1585|consensus	308		96.69
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.69
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.65
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.59
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.59
KOG2471|consensus	696		96.52
KOG4340|consensus	459		96.52
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.51
PRK04841	903	transcriptional regulator MalT; Provisional	96.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.34
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.33
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.33
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.32
KOG3824|consensus	472		96.3
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.3
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.28
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.28
KOG1915|consensus	677		96.27
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.27
KOG2471|consensus	696		96.24
KOG2396|consensus	568		96.2
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.17
COG2912	269	Uncharacterized conserved protein [Function unknow	96.07
KOG3081|consensus	299		96.06
KOG1070|consensus	1710		95.98
KOG1585|consensus	308		95.95
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.94
KOG2610|consensus	491		95.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.86
PRK10941	269	hypothetical protein; Provisional	95.78
KOG1070|consensus	1710		95.75
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.72
KOG4814|consensus	872		95.53
PLN03077	857	Protein ECB2; Provisional	95.33
KOG0530|consensus	318		95.32
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.2
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.07
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.79
KOG4507|consensus	886		94.58
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.55
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.54
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.52
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.31
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.28
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.13
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.96
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.92
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.85
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.8
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.66
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.44
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.39
KOG1310|consensus	758		93.39
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.36
KOG2610|consensus	491		93.1
KOG2300|consensus	629		92.99
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.55
KOG3617|consensus	1416		92.49
KOG0882|consensus	558		92.36
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.3
KOG2053|consensus	932		92.3
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.18
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.17
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.13
KOG3617|consensus	1416		91.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.93
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.88
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.79
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.72
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.63
COG2912	269	Uncharacterized conserved protein [Function unknow	91.57
KOG0529|consensus	421		91.13
KOG1550|consensus	552		90.91
KOG3364|consensus	149		90.74
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	90.7
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.58
KOG2047|consensus	835		90.49
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.24
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.93
KOG1550|consensus	552		89.83
KOG2047|consensus	835		89.72
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.71
COG3947	361	Response regulator containing CheY-like receiver a	89.58
KOG0529|consensus	421		89.54
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.48
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.45
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.41
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.15
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.85
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.63
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.58
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.51
KOG1839|consensus	1236		87.39
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.27
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.08
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.02
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.79
KOG2422|consensus	665		85.63
COG3898	531	Uncharacterized membrane-bound protein [Function u	85.62
KOG0686|consensus	466		85.02
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.92
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	84.77
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	84.64
PF04212	69	MIT: MIT (microtubule interacting and transport) d	84.28
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	84.26
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	84.02
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.96
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	83.4
KOG0530|consensus	318		83.22
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.98
KOG1497|consensus	399		82.82
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	82.44
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.49
COG3898	531	Uncharacterized membrane-bound protein [Function u	81.02
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.37
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	80.33
PRK00969	508	hypothetical protein; Provisional	80.21

>KOG0546|consensus

Probab=100.00  E-value=4.4e-65  Score=485.93  Aligned_cols=316  Identities=42%  Similarity=0.606  Sum_probs=285.3

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCC-CCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGK-GKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~-~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      ..||+|||||+|++.+.||||||||.|+||+||+||++||+|+.|. ...++..+|.|+.||||||+|||||||++.++|
T Consensus         6 ~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnG   85 (372)
T KOG0546|consen    6 RTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNG   85 (372)
T ss_pred             CCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCC
Confidence            3799999999999999999999999999999999999999999995 377899999999999999999999999999999


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      +||+||||..|+||+|.++|++     ||+              |||||.   |       |+  +||||||||+.    
T Consensus        86 tGGeSIYG~~FdDEnF~lKHdr-----pfl--------------LSMAN~---G-------pN--TNgSQFFITT~----  130 (372)
T KOG0546|consen   86 TGGESIYGEKFDDENFELKHDR-----PFL--------------LSMANR---G-------PN--TNGSQFFITTV----  130 (372)
T ss_pred             CCcccccccccccccceeccCc-----chh--------------hhhhcC---C-------CC--CCCcceEEeCC----
Confidence            9999999999999999999999     999              999999   9       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         ++| ||||                                                             .|+|||+|
T Consensus       131 ---p~P-HLdG-------------------------------------------------------------kHVVFGqV  145 (372)
T KOG0546|consen  131 ---PTP-HLDG-------------------------------------------------------------KHVVFGQV  145 (372)
T ss_pred             ---CCC-CcCC-------------------------------------------------------------ceeEEeeE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhhC-Ccccccchh----------------------------------------------hhHHHHH
Q psy6102         247 RQGFGVAREVSYVEAEN-DKPLVLNQM----------------------------------------------EDVIRTI  279 (426)
Q Consensus       247 ieGldvl~~I~~l~~~~-~~P~~~i~i----------------------------------------------lk~a~~~  279 (426)
                      +.|+++++.|+.+.++. +.|...+.|                                              ...+...
T Consensus       146 I~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~~~~~~~a~~~~~sgd~~~d~p~~~~~~~~~~~~~~~~~~~~~  225 (372)
T KOG0546|consen  146 IKGKEVVREIENLETDEESKPLADVVISDCGELVKKSKVKEDAGASEPDETGDSYEDYPKDDRSWDDKDFDKALEREEKK  225 (372)
T ss_pred             eechhHHHHHhccccccCCCCccceEecccccccccccccccccCCCCCCCCCcccccccccccccccccchhhhhhhhh
Confidence            99999999999988843 345531111                                              1234567


Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhh---hhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ---QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~---~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ++.|+..|++++|..|...|.++++++.........+.   ...+......++.+++.|-++++.+..|+..+..+++.+
T Consensus       226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~  305 (372)
T KOG0546|consen  226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDE  305 (372)
T ss_pred             hccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccC
Confidence            78999999999999999999999998765222211111   234566777899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      ++..+++|++++++..+.++++|+++++.|....|++.++...+..+.....++.+.++..+.+||.
T Consensus       306 ~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  306 RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999984

>KOG0880|consensus

Probab=100.00  E-value=1.2e-45  Score=324.22  Aligned_cols=161  Identities=50%  Similarity=0.775  Sum_probs=151.9

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhh-CCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCT-GEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~-~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      +-..+||||+.+++++.|||||.||...+||||+||.+||+ ++.+.|       |.|+.||||||+|||||||.+.++|
T Consensus        37 ~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~g  109 (217)
T KOG0880|consen   37 KVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDG  109 (217)
T ss_pred             cceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCC
Confidence            34579999999999999999999999999999999999999 777777       9999999999999999999999999


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      +||.|+||++|+||++.++|++     ||.              ||||+.   |       |+  +|||||||||.    
T Consensus       110 tGg~SIyG~~F~DENf~LkH~r-----pG~--------------lSMAn~---G-------pD--tNGsQFfItT~----  154 (217)
T KOG0880|consen  110 TGGKSIYGEKFPDENFKLKHDR-----PGR--------------LSMANA---G-------PD--TNGSQFFITTV----  154 (217)
T ss_pred             CCCeEeecCCCCCccceeecCC-----Cce--------------Eeeecc---C-------CC--CCCceEEEEec----
Confidence            9999999999999999999999     999              999999   9       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         .++ ||||                                                             +|++||+|
T Consensus       155 ---~t~-wLDG-------------------------------------------------------------khVVFGqV  169 (217)
T KOG0880|consen  155 ---KTP-WLDG-------------------------------------------------------------KHVVFGQV  169 (217)
T ss_pred             ---CCc-cccC-------------------------------------------------------------ceeEEeee
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102         247 RQGFGVAREVSYVEA-ENDKPLVLNQMEDV  275 (426)
Q Consensus       247 ieGldvl~~I~~l~~-~~~~P~~~i~ilk~  275 (426)
                      ++||+++.+|+..++ ..++|.+...|..+
T Consensus       170 l~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~  199 (217)
T KOG0880|consen  170 LEGMDVVRKIENVKTDERDKPLEDVVIANC  199 (217)
T ss_pred             hhhHHHHHHHHhcccCCCCCccccEEEeec
Confidence            999999999999999 67889887666543

>KOG0879|consensus

Probab=100.00  E-value=5.2e-45  Score=300.59  Aligned_cols=172  Identities=45%  Similarity=0.734  Sum_probs=158.6

Q ss_pred             CcccccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCcc
Q psy6102           2 DKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDI   81 (426)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~   81 (426)
                      ....+.+.||.||||++|++.+.|||.||||.+.+|+|++||++.|+|++-+  -++..-|+++.|||||++|||||||.
T Consensus         2 ~~~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~--~g~PiGYK~~tFHRvIkdFMiQgGDF   79 (177)
T KOG0879|consen    2 AEQLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRK--DGVPIGYKNSTFHRVIKDFMIQGGDF   79 (177)
T ss_pred             cccccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccccc--CCccccccccchHHHhhhheeccCce
Confidence            3455677899999999999999999999999999999999999999998753  24566699999999999999999999


Q ss_pred             ccCCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEe
Q psy6102          82 TNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTV  161 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~  161 (426)
                      .+++|+|-.||||.+|+||+|.++|+.     ||+              ||||++   |       |+  +||+|||||.
T Consensus        80 v~gDGtG~~sIy~~~F~DENFtlkH~~-----PGl--------------LSMANs---G-------~~--tNGCQFFITc  128 (177)
T KOG0879|consen   80 VNGDGTGVASIYGSTFPDENFTLKHDG-----PGL--------------LSMANS---G-------KD--TNGCQFFITC  128 (177)
T ss_pred             ecCCCceEEEEcCCCCCCcceeeecCC-----Cce--------------eecccc---C-------CC--CCCceEEEEe
Confidence            999999999999999999999999999     999              999999   9       88  9999999999


Q ss_pred             eccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccc
Q psy6102         162 SFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNG  241 (426)
Q Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (426)
                      .       .|. +||+                                                             +|+
T Consensus       129 a-------kcd-fLD~-------------------------------------------------------------KHV  139 (177)
T KOG0879|consen  129 A-------KCD-FLDG-------------------------------------------------------------KHV  139 (177)
T ss_pred             c-------ccc-cccC-------------------------------------------------------------ceE
Confidence            9       999 9999                                                             999


Q ss_pred             eechhhccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102         242 IFGCVRQGFGVAREVSYVEA-ENDKPLVLNQMEDV  275 (426)
Q Consensus       242 vFG~VieGldvl~~I~~l~~-~~~~P~~~i~ilk~  275 (426)
                      +||+|++|+.++++|+.+++ .+.+|..+..+.++
T Consensus       140 VFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qC  174 (177)
T KOG0879|consen  140 VFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQC  174 (177)
T ss_pred             EEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeec
Confidence            99999999999999999999 67888877666443

>KOG0881|consensus

Probab=100.00  E-value=2.7e-41  Score=275.44  Aligned_cols=150  Identities=39%  Similarity=0.573  Sum_probs=140.5

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      ..|.|.++|+.     |.|++|||-+-||+||.||..|++          .+||+|+.|||||++||||||||+ ++|+|
T Consensus         8 q~~~V~LeTsm-----G~i~~ElY~kHaP~TC~NF~eLar----------rgYYn~v~FHRii~DFmiQGGDPT-GTGRG   71 (164)
T KOG0881|consen    8 QPPNVTLETSM-----GKITLELYWKHAPRTCQNFAELAR----------RGYYNGVIFHRIIKDFMIQGGDPT-GTGRG   71 (164)
T ss_pred             CCCeEEEeecc-----cceehhhhhhcCcHHHHHHHHHHh----------cccccceeeeehhhhheeecCCCC-CCCCC
Confidence            45789999987     999999999999999999999994          688999999999999999999998 89999


Q ss_pred             CccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102          89 GESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF  167 (426)
Q Consensus        89 ~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~  167 (426)
                      |.|+||..|+||- .+++|..     .|+              ||||+.   |       |+  +||||||||+.     
T Consensus        72 GaSIYG~kF~DEi~~dLkhTG-----AGI--------------LsMANa---G-------Pn--TNgSQFFiTLA-----  115 (164)
T KOG0881|consen   72 GASIYGDKFEDEIHSDLKHTG-----AGI--------------LSMANA---G-------PN--TNGSQFFITLA-----  115 (164)
T ss_pred             ccccccchhhhhhhhhhcccc-----hhh--------------hhhhcc---C-------CC--CCCceEEEEec-----
Confidence            9999999999996 5888988     899              999999   9       99  99999999999     


Q ss_pred             cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102         168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR  247 (426)
Q Consensus       168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi  247 (426)
                        |.+ ||||                                                             +|++||+|.
T Consensus       116 --Pt~-~LDG-------------------------------------------------------------KHTIFGRV~  131 (164)
T KOG0881|consen  116 --PTQ-WLDG-------------------------------------------------------------KHTIFGRVC  131 (164)
T ss_pred             --Ccc-ccCC-------------------------------------------------------------cceeehhhh
Confidence              999 9999                                                             999999999


Q ss_pred             ccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         248 QGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       248 eGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      .||+++..+-.+.+ .+++|....++++
T Consensus       132 ~Gm~vikr~G~v~Td~~DRPi~~~kIik  159 (164)
T KOG0881|consen  132 SGMEVIKRMGMVETDNSDRPIDEVKIIK  159 (164)
T ss_pred             hhHHHHHhhcceecCCCCCCccceeeEe
Confidence            99999999999999 5688988877765

>KOG0111|consensus

Probab=100.00  E-value=8.8e-40  Score=290.88  Aligned_cols=162  Identities=47%  Similarity=0.752  Sum_probs=154.7

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      ...+|.||+++.|++...|+|++.|..+.+|+|++||..||+|+.|.|       |.|++||||||.||+||||.++++|
T Consensus       133 a~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ng  205 (298)
T KOG0111|consen  133 AMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNG  205 (298)
T ss_pred             hhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCC
Confidence            456899999999999999999999999999999999999999999999       9999999999999999999999999


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      +||.||||.+|.||+|.++|+.     ||+              ||||+.   |       ++  +|||||||++.    
T Consensus       206 tggksiygkkfddenf~lkht~-----pgt--------------lsmans---g-------an--tngsqffict~----  250 (298)
T KOG0111|consen  206 TGGKSIYGKKFDDENFTLKHTM-----PGT--------------LSMANS---G-------AN--TNGSQFFICTE----  250 (298)
T ss_pred             CCCcccccccccccceeeecCC-----Cce--------------eecccc---C-------CC--CCCceEEEEec----
Confidence            9999999999999999999999     999              999999   9       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         ... |||+                                                             +|++||.|
T Consensus       251 ---ktd-wldg-------------------------------------------------------------khvvfghv  265 (298)
T KOG0111|consen  251 ---KTD-WLDG-------------------------------------------------------------KHVVFGHV  265 (298)
T ss_pred             ---ccc-cccC-------------------------------------------------------------ceeEEeee
Confidence               888 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhhCCcccccchhhhH
Q psy6102         247 RQGFGVAREVSYVEAENDKPLVLNQMEDV  275 (426)
Q Consensus       247 ieGldvl~~I~~l~~~~~~P~~~i~ilk~  275 (426)
                      ++|+++++.++...+.++.|...+.|.++
T Consensus       266 ~eg~~vvrq~e~qgsksgkp~qkv~i~~c  294 (298)
T KOG0111|consen  266 VEGMNVVRQVEQQGSKSGKPQQKVKIVEC  294 (298)
T ss_pred             cchHHHHHHHHhccCCCCCcceEEEEEec
Confidence            99999999999999999999877766543

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=1.1e-38  Score=285.40  Aligned_cols=162  Identities=51%  Similarity=0.815  Sum_probs=148.1

Q ss_pred             ceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCc
Q psy6102          11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGE   90 (426)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (426)
                      |+||||+++++++.|+|+||||.+.||+||+||++||++..+.+.  +..+|+++.||||+|+|||||||+..++|+++.
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~   78 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK   78 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence            689999999999999999999999999999999999987655432  456899999999999999999998878899999


Q ss_pred             cccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102          91 SIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN  170 (426)
Q Consensus        91 ~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~  170 (426)
                      +++|..|++|...++|++     +|+              ||||+.   +       |+  +++||||||++       +
T Consensus        79 ~~~g~~~~~e~~~~~h~~-----~G~--------------lsma~~---~-------~~--~~~sqFfIt~~-------~  120 (164)
T cd01926          79 SIYGEKFPDENFKLKHTG-----PGL--------------LSMANA---G-------PN--TNGSQFFITTV-------K  120 (164)
T ss_pred             cccCCccCCCCccccCCC-----ccE--------------EEeeEC---C-------CC--CcccEEEEEeC-------C
Confidence            999999999988889988     899              999999   8       88  99999999999       9


Q ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102         171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF  250 (426)
Q Consensus       171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl  250 (426)
                      ++ +||+                                                             .|++||+|++|+
T Consensus       121 ~~-~Ld~-------------------------------------------------------------~~tvFG~V~~G~  138 (164)
T cd01926         121 TP-WLDG-------------------------------------------------------------KHVVFGKVVEGM  138 (164)
T ss_pred             CC-ccCC-------------------------------------------------------------cccEEEEEEEcH
Confidence            99 9999                                                             999999999999


Q ss_pred             cHHHHHhhchhhCCcccccchhhh
Q psy6102         251 GVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       251 dvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      +++++|+.+++++++|...+.+.+
T Consensus       139 dvl~~i~~~~~~~~~P~~~i~I~~  162 (164)
T cd01926         139 DVVKKIENVGSGNGKPKKKVVIAD  162 (164)
T ss_pred             HHHHHHHcCCCCCCCCcCCeEEEE
Confidence            999999999988778887766643

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=1.9e-38  Score=288.16  Aligned_cols=167  Identities=49%  Similarity=0.749  Sum_probs=152.6

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      ...+|+||||+++++++.|+|+||||.+.||+||+||++||+|.... ..+|.++|+|+.||||+|+|||||||+..++|
T Consensus        12 ~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~-~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g   90 (183)
T PTZ00060         12 MSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVG-SSGKNLHYKGSIFHRIIPQFMCQGGDITNHNG   90 (183)
T ss_pred             cCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCccc-ccCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence            34589999999999999999999999999999999999999986643 24578999999999999999999999987789


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      ++|.+++|..|++|...++|+.     +|+              |||++.   |       |+  +++||||||++    
T Consensus        91 ~~g~~~~g~~~~~e~~~~~h~~-----~G~--------------lsma~~---g-------~~--~~~sqFfIt~~----  135 (183)
T PTZ00060         91 TGGESIYGRKFTDENFKLKHDQ-----PGL--------------LSMANA---G-------PN--TNGSQFFITTV----  135 (183)
T ss_pred             CCCCcccccccCCccccccCCC-----CCE--------------EEeccC---C-------CC--CCcceEEEEeC----
Confidence            9999999999999988889988     899              999999   8       88  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         ++| +||+                                                             .|++||+|
T Consensus       136 ---~~~-~Ldg-------------------------------------------------------------~~tvFG~V  150 (183)
T PTZ00060        136 ---PCP-WLDG-------------------------------------------------------------KHVVFGKV  150 (183)
T ss_pred             ---CCc-ccCC-------------------------------------------------------------CccEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhhCCcccccchhhh
Q psy6102         247 RQGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      ++|++++++|+...+..+.|..++.+.+
T Consensus       151 i~G~dvl~~I~~~~~~~~~P~~~v~I~~  178 (183)
T PTZ00060        151 IEGMEVVRAMEKEGTQSGYPKKPVVVTD  178 (183)
T ss_pred             EccHHHHHHHHccCCCCCCCcCCeEEEE
Confidence            9999999999998887778888777654

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=3.3e-38  Score=286.94  Aligned_cols=167  Identities=44%  Similarity=0.737  Sum_probs=149.3

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      .+.+++||||+++++++.|+|+||||.+.+|+||+||++||+|++...  +....|+++.||||+|+|||||||+..++|
T Consensus        15 ~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~--g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g   92 (186)
T PLN03149         15 NPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKA--GLPQGYKGCQFHRVIKDFMIQGGDFLKGDG   92 (186)
T ss_pred             CCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcccc--CcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence            355799999999999999999999999999999999999998765211  112349999999999999999999977889


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      +|+.++||..|++|.+.++|++     +|+              |||++.   |       |+  +++||||||++    
T Consensus        93 ~g~~~~~g~~f~~e~~~~~h~~-----~G~--------------lsma~~---g-------~~--s~~sqFfIt~~----  137 (186)
T PLN03149         93 TGCVSIYGSKFEDENFIAKHTG-----PGL--------------LSMANS---G-------PN--TNGCQFFITCA----  137 (186)
T ss_pred             CCcccccCCccCCcccccccCC-----CCE--------------EEEeeC---C-------CC--CcccEEEEECC----
Confidence            9999999999999988889998     899              999999   8       89  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         ++| +||+                                                             +|++||+|
T Consensus       138 ---~~p-~Ldg-------------------------------------------------------------~~tVFG~V  152 (186)
T PLN03149        138 ---KCD-WLDN-------------------------------------------------------------KHVVFGRV  152 (186)
T ss_pred             ---CCC-ccCC-------------------------------------------------------------CceEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             h-ccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102         247 R-QGFGVAREVSYVEA-ENDKPLVLNQMEDV  275 (426)
Q Consensus       247 i-eGldvl~~I~~l~~-~~~~P~~~i~ilk~  275 (426)
                      + +|++++++|+.+.+ ..++|...+.+..+
T Consensus       153 i~eG~dvl~~I~~~~~~~~~~P~~~i~I~~c  183 (186)
T PLN03149        153 LGDGLLVVRKIENVATGPNNRPKLACVISEC  183 (186)
T ss_pred             EECcHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence            9 79999999999999 67888887776543

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-38  Score=277.49  Aligned_cols=132  Identities=40%  Similarity=0.631  Sum_probs=120.5

Q ss_pred             CeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCc
Q psy6102          21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (426)
Q Consensus        21 ~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e  100 (426)
                      .|+.|+|+|+||++.||+||+||+.||+          .+||+|+.|||||++|||||||++.++|+||+   +++|++|
T Consensus         5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E   71 (158)
T COG0652           5 ETNKGDITIELYPDKAPKTVANFLQLVK----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDE   71 (158)
T ss_pred             eccCCCEEEEECCCcCcHHHHHHHHHHH----------cCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccc
Confidence            4567999999999999999999999994          68899999999999999999999977799998   5899999


Q ss_pred             cccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102         101 NFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV  180 (426)
Q Consensus       101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~  180 (426)
                      ++...|++   +.||+              |||||+   |+      |+  +++||||||+.       +.| |||+   
T Consensus        72 ~~~~~~~~---~~~G~--------------lsMA~~---g~------P~--t~~SQFFI~~~-------~~~-~Ld~---  112 (158)
T COG0652          72 NFALNGDR---HKRGT--------------LSMARA---GD------PN--SNGSQFFITVV-------DNP-FLDG---  112 (158)
T ss_pred             cccccccc---CCcce--------------EeEccc---CC------cC--CccCeEEEEec-------CCc-ccCC---
Confidence            88776654   22788              999999   87      99  99999999999       999 9999   


Q ss_pred             HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102         181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE  260 (426)
Q Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~  260 (426)
                                                                                +|++||+|++|++++++|+...
T Consensus       113 ----------------------------------------------------------~ytVFG~Vv~GmdvvdkI~~~~  134 (158)
T COG0652         113 ----------------------------------------------------------KYTVFGQVVEGMDVVDKIKNGD  134 (158)
T ss_pred             ----------------------------------------------------------CCcEEEEEehhHHHHHHHHcCC
Confidence                                                                      9999999999999999999987


Q ss_pred             hh
Q psy6102         261 AE  262 (426)
Q Consensus       261 ~~  262 (426)
                      +.
T Consensus       135 ~~  136 (158)
T COG0652         135 TD  136 (158)
T ss_pred             cc
Confidence            73

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=7e-38  Score=293.39  Aligned_cols=165  Identities=27%  Similarity=0.429  Sum_probs=147.2

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCC-CCccccccCCcccccccc-cEEeeCccccC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRIIPQ-FMIQGGDITNF   84 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~-~~k~~~y~~~~f~rv~~~-~~iq~G~~~~~   84 (426)
                      ...+++|||||+|++++.|+|+||||.+.||+||+||++||+|+.+.+. .++..+|+|+.||||+++ |||||||+.. 
T Consensus        49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-  127 (249)
T PTZ00221         49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-  127 (249)
T ss_pred             CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence            3568999999999999999999999999999999999999999876542 344567999999999986 8999999863 


Q ss_pred             CCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102          85 NGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL  164 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~  164 (426)
                         ++.+++|..|+||++.++|++     +|+              |||++.   |       |+  ++|||||||++  
T Consensus       128 ---~g~s~~G~~f~dE~~~~~h~~-----~G~--------------LsMan~---G-------pn--tngSQFfITl~--  171 (249)
T PTZ00221        128 ---FNVSSTGTPIADEGYRHRHTE-----RGL--------------LTMISE---G-------PH--TSGSVFGITLG--  171 (249)
T ss_pred             ---CCccCCCCcccCccccccCCC-----CCE--------------EEeCcC---C-------CC--CccceEEEECC--
Confidence               355778999999999999999     999              999999   8       99  99999999999  


Q ss_pred             ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102         165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG  244 (426)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG  244 (426)
                           ++| |||+                                                             +|++||
T Consensus       172 -----~~p-~LDg-------------------------------------------------------------k~vVFG  184 (249)
T PTZ00221        172 -----PSP-SLDF-------------------------------------------------------------KQVVFG  184 (249)
T ss_pred             -----CCC-ccCC-------------------------------------------------------------CceEEE
Confidence                 999 9999                                                             999999


Q ss_pred             hhhccccHHHHHhhchh-hCCcccccchhhhH
Q psy6102         245 CVRQGFGVAREVSYVEA-ENDKPLVLNQMEDV  275 (426)
Q Consensus       245 ~VieGldvl~~I~~l~~-~~~~P~~~i~ilk~  275 (426)
                      +|++|++++++|+.+.+ ..++|...+.|..+
T Consensus       185 rVveGmdVv~kIe~v~~d~~grP~~~V~I~~C  216 (249)
T PTZ00221        185 KAVDDLSLLEKLESLPLDDVGRPLLPVTVSFC  216 (249)
T ss_pred             EEEeCHHHHHHHHcCCcCCCCCCCCCeEEEEC
Confidence            99999999999999987 56788887777653

>KOG0883|consensus

Probab=100.00  E-value=2.3e-36  Score=288.35  Aligned_cols=142  Identities=39%  Similarity=0.597  Sum_probs=133.7

Q ss_pred             eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102          22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN  101 (426)
Q Consensus        22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  101 (426)
                      |+.|.+-|||+.|.+|++|+||+.||          +.|||+|+.|||.|++||||||||+ ++|+||+||+|.+|.||+
T Consensus       284 Tn~G~lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf  352 (518)
T KOG0883|consen  284 TNHGPLNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF  352 (518)
T ss_pred             ccCCceeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCcccccc
Confidence            45699999999999999999999999          5799999999999999999999998 899999999999999998


Q ss_pred             c-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102         102 F-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV  180 (426)
Q Consensus       102 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~  180 (426)
                      + .+.|+.     ||+              |||||.   |       |+  +|||||||+..       +|. |||+   
T Consensus       353 ~~~l~H~g-----RGv--------------lSMANs---G-------pn--TNgSQFFItyr-------sck-hLd~---  390 (518)
T KOG0883|consen  353 CSNLSHDG-----RGV--------------LSMANS---G-------PN--TNGSQFFITYR-------SCK-HLDN---  390 (518)
T ss_pred             CCCCCcCC-----cce--------------EeeccC---C-------CC--CCCceEEEEec-------chh-hccc---
Confidence            6 688998     999              999999   9       99  99999999999       999 9999   


Q ss_pred             HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102         181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE  260 (426)
Q Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~  260 (426)
                                                                                +|++||+|+.|++++.+++.++
T Consensus       391 ----------------------------------------------------------KHTIFGrvVGGldtL~amEnve  412 (518)
T KOG0883|consen  391 ----------------------------------------------------------KHTIFGRVVGGLDTLTAMENVE  412 (518)
T ss_pred             ----------------------------------------------------------cceeeeeeeccHHHHHHHhcCC
Confidence                                                                      9999999999999999999999


Q ss_pred             h-hCCcccccchhhh
Q psy6102         261 A-ENDKPLVLNQMED  274 (426)
Q Consensus       261 ~-~~~~P~~~i~ilk  274 (426)
                      + ..++|.+.+.+..
T Consensus       413 ~d~~DrP~e~I~i~~  427 (518)
T KOG0883|consen  413 TDEKDRPKEEIKIED  427 (518)
T ss_pred             CCCCCCcccceEEee
Confidence            9 5688988777654

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=7.1e-36  Score=262.61  Aligned_cols=141  Identities=38%  Similarity=0.521  Sum_probs=129.3

Q ss_pred             eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102          22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN  101 (426)
Q Consensus        22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  101 (426)
                      |+.|+|+||||++.||+||+||++||+          .+||+++.||||+|+|||||||+. ++|+|+.+++|..|++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   72 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHAR----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF   72 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence            456999999999999999999999996          478999999999999999999986 789999999999999997


Q ss_pred             c-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102         102 F-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV  180 (426)
Q Consensus       102 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~  180 (426)
                      . .++|.+     +|+              |||++.   +       |+  +++||||||++       ++| +||+   
T Consensus        73 ~~~~~h~~-----~G~--------------l~ma~~---~-------~~--s~~SqFfIt~~-------~~p-~Ldg---  110 (148)
T cd01927          73 SPSLKHDR-----PYT--------------LSMANA---G-------PN--TNGSQFFITTV-------ATP-WLDN---  110 (148)
T ss_pred             ccccCcCC-----CeE--------------EEEeeC---C-------CC--CCCceEEEEcC-------CCc-ccCC---
Confidence            5 677888     899              999999   8       88  99999999999       999 9999   


Q ss_pred             HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102         181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE  260 (426)
Q Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~  260 (426)
                                                                                .|++||+|++|++++++|+.+.
T Consensus       111 ----------------------------------------------------------~~tvFG~V~~G~dvl~~I~~~~  132 (148)
T cd01927         111 ----------------------------------------------------------KHTVFGRVVKGMDVVQRIENVK  132 (148)
T ss_pred             ----------------------------------------------------------CceEEEEEEcCHHHHHHHHcCC
Confidence                                                                      9999999999999999999999


Q ss_pred             h-hCCcccccchhh
Q psy6102         261 A-ENDKPLVLNQME  273 (426)
Q Consensus       261 ~-~~~~P~~~i~il  273 (426)
                      + .+++|..++.|.
T Consensus       133 ~~~~~~P~~~i~I~  146 (148)
T cd01927         133 TDKNDRPYEDIKII  146 (148)
T ss_pred             CCCCCCCcCCeEEE
Confidence            8 567888877654

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=2e-35  Score=259.02  Aligned_cols=141  Identities=38%  Similarity=0.582  Sum_probs=128.9

Q ss_pred             eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102          22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN  101 (426)
Q Consensus        22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  101 (426)
                      |+.|+|+||||.+.||+||+||++||+          .+||+++.||||+|+|||||||+. ++|+++.+++|.+|++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~   72 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAK----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI   72 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence            456999999999999999999999995          478999999999999999999986 678899999999999995


Q ss_pred             -ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102         102 -FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV  180 (426)
Q Consensus       102 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~  180 (426)
                       ..++|++     +|+              |||++.   +       |+  +++||||||++       ++| +||+   
T Consensus        73 ~~~~~h~~-----~G~--------------l~ma~~---~-------~~--s~~sqFfIt~~-------~~p-~Ld~---  110 (146)
T cd01922          73 HPELKHTG-----AGI--------------LSMANA---G-------PN--TNGSQFFITLA-------PTP-WLDG---  110 (146)
T ss_pred             ccCcCCCC-----CeE--------------EEEeeC---C-------CC--CCccEEEEEcC-------CCc-ccCC---
Confidence             4678887     899              999999   8       88  99999999999       999 9999   


Q ss_pred             HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102         181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE  260 (426)
Q Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~  260 (426)
                                                                                .|++||+|++|++++++|+.+.
T Consensus       111 ----------------------------------------------------------~~tvFG~V~~G~dvl~~I~~~~  132 (146)
T cd01922         111 ----------------------------------------------------------KHTIFGRVSKGMKVIENMVEVQ  132 (146)
T ss_pred             ----------------------------------------------------------CCCEEEEEEcCHHHHHHHHhCC
Confidence                                                                      9999999999999999999998


Q ss_pred             hhCCcccccchhh
Q psy6102         261 AENDKPLVLNQME  273 (426)
Q Consensus       261 ~~~~~P~~~i~il  273 (426)
                      ++.++|...+.+.
T Consensus       133 ~~~~~P~~~I~I~  145 (146)
T cd01922         133 TQTDRPIDEVKIL  145 (146)
T ss_pred             CCCCCcCCCeEEe
Confidence            8877888777653

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>KOG0882|consensus

Probab=100.00  E-value=7.8e-36  Score=290.05  Aligned_cols=153  Identities=33%  Similarity=0.461  Sum_probs=140.1

Q ss_pred             ceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCc
Q psy6102          11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGE   90 (426)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (426)
                      +++.=+-.|..|+.|+|.|.||++.|||||+||-.-|+          .|||+|..|||||++||||+|||. ++|+||+
T Consensus       400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~r----------ngyy~~~~fhriik~fmiqtgdp~-g~gtgge  468 (558)
T KOG0882|consen  400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSR----------NGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGE  468 (558)
T ss_pred             ceecccceEEEecccceEEEecccccchhhhhhhcccc----------CccccCcchHHhhhhheeecCCCC-CCCCCCc
Confidence            44445556667778999999999999999999999885          588999999999999999999997 8999999


Q ss_pred             cccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccC
Q psy6102          91 SIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTN  169 (426)
Q Consensus        91 ~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~  169 (426)
                      ||+|..|+||+. .++|++     |..              |||||.   |       |+  +||||||||+.       
T Consensus       469 siwg~dfedefh~~lrhdr-----pft--------------~smana---g-------~n--tngsqffit~~-------  510 (558)
T KOG0882|consen  469 SIWGKDFEDEFHPNLRHDR-----PFT--------------VSMANA---G-------PN--TNGSQFFITTV-------  510 (558)
T ss_pred             ccccccchhhcCcccccCC-----Cce--------------EEeccc---C-------CC--CCCceEEEEec-------
Confidence            999999999984 789999     999              999999   9       99  99999999999       


Q ss_pred             chhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcc
Q psy6102         170 NCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQG  249 (426)
Q Consensus       170 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieG  249 (426)
                      ++| |||+                                                             +|++||+|..|
T Consensus       511 ~tp-wld~-------------------------------------------------------------khtvfgrv~~g  528 (558)
T KOG0882|consen  511 PTP-WLDG-------------------------------------------------------------KHTVFGRVTAG  528 (558)
T ss_pred             Ccc-ccCC-------------------------------------------------------------cceeEEEEecc
Confidence            999 9999                                                             99999999999


Q ss_pred             ccHHHHHhhchh-hCCcccccchhhh
Q psy6102         250 FGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       250 ldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      |+++..|+++.+ ..++|.+...++.
T Consensus       529 m~vvqri~~v~t~k~drp~e~v~iin  554 (558)
T KOG0882|consen  529 MDVVQRIEQVKTDKYDRPYEDVKIIN  554 (558)
T ss_pred             hhHHhHhhhcccCcCCCCCCceeEEE
Confidence            999999999999 6789988777653

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=3.2e-35  Score=259.75  Aligned_cols=146  Identities=39%  Similarity=0.555  Sum_probs=131.9

Q ss_pred             EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102          13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI   92 (426)
Q Consensus        13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~   92 (426)
                      |.|+|+     .|+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||+. ++|+|+.++
T Consensus         3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~   66 (153)
T cd01928           3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCA----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESI   66 (153)
T ss_pred             EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHh----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCcc
Confidence            666665     4999999999999999999999996          478999999999999999999996 678999999


Q ss_pred             cCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCch
Q psy6102          93 YGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC  171 (426)
Q Consensus        93 ~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~  171 (426)
                      +|..|++|+. .++|+.     +|+              |||++.   +       |+  +++|||||+++       ++
T Consensus        67 ~~~~~~~e~~~~~~~~~-----~G~--------------v~ma~~---~-------~~--~~~SqFfI~~~-------~~  108 (153)
T cd01928          67 WGKKFEDEFRETLKHDS-----RGV--------------VSMANN---G-------PN--TNGSQFFITYA-------KQ  108 (153)
T ss_pred             CCCccccccccCCCcCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEEeC-------CC
Confidence            9999999976 567877     899              999999   8       88  99999999999       89


Q ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcccc
Q psy6102         172 EIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG  251 (426)
Q Consensus       172 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGld  251 (426)
                      | +||+                                                             .|++||+|++|++
T Consensus       109 ~-~Ld~-------------------------------------------------------------~~tvFG~V~~G~d  126 (153)
T cd01928         109 P-HLDG-------------------------------------------------------------KYTVFGKVIDGFE  126 (153)
T ss_pred             c-ccCC-------------------------------------------------------------CceEEEEEEeCHH
Confidence            9 9999                                                             9999999999999


Q ss_pred             HHHHHhhchh-hCCcccccchhhh
Q psy6102         252 VAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       252 vl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ++++|+.+.+ ..++|...+.|.+
T Consensus       127 vl~~I~~~~~~~~~~P~~~i~I~~  150 (153)
T cd01928         127 TLDTLEKLPVDKKYRPLEEIRIKD  150 (153)
T ss_pred             HHHHHHcCCCCCCCCCcCCeEEEE
Confidence            9999999988 5678888776643

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>KOG0884|consensus

Probab=100.00  E-value=2.2e-35  Score=239.50  Aligned_cols=142  Identities=39%  Similarity=0.553  Sum_probs=129.6

Q ss_pred             EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102          13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI   92 (426)
Q Consensus        13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~   92 (426)
                      |.+.|.+     |+|.||||.+.+|+||+||+.||.          ..||++++|||-+|+||+|+||++ .+|+||.||
T Consensus         3 vtlht~~-----gdikiev~~e~tpktce~~l~~~~----------~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~si   66 (161)
T KOG0884|consen    3 VTLHTDV-----GDIKIEVFCERTPKTCENFLALCA----------SDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSI   66 (161)
T ss_pred             EEEeecc-----CcEEEEEEecCChhHHHHHHHHhh----------hhhccceeecCCCCCcEEEeCCCC-CCCCCCccc
Confidence            5666665     999999999999999999999995          466999999999999999999997 789999999


Q ss_pred             cCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCch
Q psy6102          93 YGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC  171 (426)
Q Consensus        93 ~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~  171 (426)
                      +|.+|+||+. .++|+.     +|.              +|||+.   |       |+  +|+||||||.+       ..
T Consensus        67 wg~~fede~~~~lkh~~-----rg~--------------vsmann---g-------p~--tn~sqffity~-------kq  108 (161)
T KOG0884|consen   67 WGKKFEDEYSEYLKHNV-----RGV--------------VSMANN---G-------PN--TNGSQFFITYG-------KQ  108 (161)
T ss_pred             cCCcchHHHHHHHhhcc-----cee--------------EEcccC---C-------CC--CCCceEEEEec-------CC
Confidence            9999999975 688998     899              999999   9       99  99999999999       99


Q ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcccc
Q psy6102         172 EIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG  251 (426)
Q Consensus       172 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGld  251 (426)
                      | |||-                                                             +|++||+|++|++
T Consensus       109 ~-hldm-------------------------------------------------------------kytvfgkvidg~e  126 (161)
T KOG0884|consen  109 P-HLDM-------------------------------------------------------------KYTVFGKVIDGLE  126 (161)
T ss_pred             C-ccce-------------------------------------------------------------eEeeeeeeccchh
Confidence            9 9999                                                             9999999999999


Q ss_pred             HHHHHhhchhhC--Ccccccc
Q psy6102         252 VAREVSYVEAEN--DKPLVLN  270 (426)
Q Consensus       252 vl~~I~~l~~~~--~~P~~~i  270 (426)
                      .+++++.++.++  .+|....
T Consensus       127 tldele~l~v~~ktyrpl~~~  147 (161)
T KOG0884|consen  127 TLDELEKLPVNEKTYRPLNDV  147 (161)
T ss_pred             hHHHHhhcccCccccccchhe
Confidence            999999999843  4666543

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=1.4e-34  Score=257.49  Aligned_cols=146  Identities=38%  Similarity=0.562  Sum_probs=132.0

Q ss_pred             EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102          13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI   92 (426)
Q Consensus        13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~   92 (426)
                      |.|+|+     .|+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||+. ++|+|+.++
T Consensus         2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~   65 (159)
T cd01923           2 VRLHTN-----KGDLNLELHCDKAPKACENFIKLCK----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESI   65 (159)
T ss_pred             EEEEEc-----cccEEEEEeCCCChHHHHHHHHHHh----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCccc
Confidence            566665     5999999999999999999999995          578999999999999999999996 689999999


Q ss_pred             cCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCch
Q psy6102          93 YGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC  171 (426)
Q Consensus        93 ~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~  171 (426)
                      +|..|++|.. .++|++     +|+              |||++.   +       |+  +++||||||++       ++
T Consensus        66 ~g~~~~~E~~~~~~h~~-----~G~--------------v~ma~~---~-------~~--s~~sqFfIt~~-------~~  107 (159)
T cd01923          66 WGKPFKDEFKPNLSHDG-----RGV--------------LSMANS---G-------PN--TNGSQFFITYR-------SC  107 (159)
T ss_pred             cCCccCcccccCcCcCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEECC-------CC
Confidence            9999999964 567887     899              999999   8       88  99999999999       99


Q ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcccc
Q psy6102         172 EIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG  251 (426)
Q Consensus       172 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGld  251 (426)
                      | +||+                                                             .|++||+|++|++
T Consensus       108 ~-~Ld~-------------------------------------------------------------~~~vFG~V~~G~~  125 (159)
T cd01923         108 K-HLDG-------------------------------------------------------------KHTVFGRVVGGLE  125 (159)
T ss_pred             c-ccCC-------------------------------------------------------------CccEEEEEEcCHH
Confidence            9 9999                                                             9999999999999


Q ss_pred             HHHHHhhchh-hCCcccccchhhh
Q psy6102         252 VAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       252 vl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ++++|+...+ .+++|...+.+.+
T Consensus       126 vl~~I~~~~~~~~~~P~~~i~I~~  149 (159)
T cd01923         126 TLEAMENVPDPGTDRPKEEIKIED  149 (159)
T ss_pred             HHHHHHcCCCCCCCCCCCCeEEEE
Confidence            9999999988 5678888776654

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=1.9e-33  Score=252.05  Aligned_cols=142  Identities=32%  Similarity=0.498  Sum_probs=124.7

Q ss_pred             eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccC-------
Q psy6102          22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYG-------   94 (426)
Q Consensus        22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~-------   94 (426)
                      |+.|+|+||||++.||+||+||++||+          .+||+|+.||||+++|||||||+. ++|+++.++++       
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~   72 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCK----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA   72 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHh----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence            456999999999999999999999996          478999999999999999999996 67888888765       


Q ss_pred             CCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc-hh
Q psy6102          95 PCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN-CE  172 (426)
Q Consensus        95 ~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~-~~  172 (426)
                      ..|++|.. .++|+.     +|+              ||||+.   +       ++  +++||||||++       + ++
T Consensus        73 ~~~~~e~~~~~~h~~-----~G~--------------l~ma~~---~-------~~--~~~SQFfIt~~-------~~~~  114 (166)
T cd01921          73 RFFEPEILPLLKHSK-----KGT--------------VSMVNA---G-------DN--LNGSQFYITLG-------ENLD  114 (166)
T ss_pred             cccCcccCCccccCC-----ceE--------------EEEeEC---C-------CC--CccceEEEEcC-------CCCc
Confidence            35777764 667877     899              999999   8       78  89999999997       5 78


Q ss_pred             hhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccH
Q psy6102         173 IHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGV  252 (426)
Q Consensus       173 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldv  252 (426)
                       +||+                                                             +|++||+|++|+++
T Consensus       115 -~Ldg-------------------------------------------------------------~~tvFG~Vi~G~dv  132 (166)
T cd01921         115 -YLDG-------------------------------------------------------------KHTVFGQVVEGFDV  132 (166)
T ss_pred             -ccCC-------------------------------------------------------------CccEEEEEEcCHHH
Confidence             9999                                                             99999999999999


Q ss_pred             HHHHhhchh-hCCcccccchhhh
Q psy6102         253 AREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       253 l~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      +++|+.+.+ .+++|...+.|.+
T Consensus       133 v~~I~~~~~~~~~~P~~~i~I~~  155 (166)
T cd01921         133 LEKINDAIVDDDGRPLKDIRIKH  155 (166)
T ss_pred             HHHHHcCCCCCCCCCCCCeEEEE
Confidence            999999988 5678888776653

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0865|consensus

Probab=100.00  E-value=1.4e-33  Score=248.50  Aligned_cols=157  Identities=48%  Similarity=0.765  Sum_probs=147.1

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccc---cccccEEeeCccccCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR---IIPQFMIQGGDITNFN   85 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~r---v~~~~~iq~G~~~~~~   85 (426)
                      .+|+||||+++++++.|+++++||.|..|+|++||.+||+|++|.+       |.+++|||   .+++||+||||.+..+
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn   74 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN   74 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence            4899999999999999999999999999999999999999998877       99999999   3457999999999999


Q ss_pred             CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      |+||.|+||+.|+||++.++|..     ||+              ||||+.   |       |+  +++|||||++.   
T Consensus        75 gtggkSiy~ekF~DenFilkhtg-----pGi--------------LSmaNa---g-------pn--tngsqfficta---  120 (167)
T KOG0865|consen   75 GTGGKSIYGEKFDDENFILKHTG-----PGI--------------LSMANA---G-------PN--TNGSQFFICTA---  120 (167)
T ss_pred             CccceEecccccCCcCcEEecCC-----CCe--------------eehhhc---C-------CC--ccccEEEEEcc---
Confidence            99999999999999999999999     899              999999   9       99  99999999999   


Q ss_pred             cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102         166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC  245 (426)
Q Consensus       166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~  245 (426)
                          ..+ |||+                                                             +|++||+
T Consensus       121 ----kte-wLdg-------------------------------------------------------------khVVfGk  134 (167)
T KOG0865|consen  121 ----KTE-WLDG-------------------------------------------------------------KHVVFGK  134 (167)
T ss_pred             ----ccc-cccC-------------------------------------------------------------ceeEcCc
Confidence                777 9999                                                             9999999


Q ss_pred             hhccccHHHHHhhchhhCCcccccchh
Q psy6102         246 VRQGFGVAREVSYVEAENDKPLVLNQM  272 (426)
Q Consensus       246 VieGldvl~~I~~l~~~~~~P~~~i~i  272 (426)
                      |.+|++++++++.....++.+...+.+
T Consensus       135 v~eGm~iv~a~e~~gs~~gk~~~~i~i  161 (167)
T KOG0865|consen  135 VKEGMDIVEAMERFGSRNGKTSKKITI  161 (167)
T ss_pred             eEcccchhhhhhccCCcCCcccccEEE
Confidence            999999999999988888877665544

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=3.9e-33  Score=254.33  Aligned_cols=155  Identities=25%  Similarity=0.352  Sum_probs=126.2

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      ..++++|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||+....+
T Consensus        25 ~~~~~~v~l~T~~-----G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRvi~~f~iQgG~~~~~~~   89 (190)
T PRK10903         25 AKGDPHVLLTTSA-----GNIELELNSQKAPVSVKNFVDYVN----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ   89 (190)
T ss_pred             cCCCcEEEEEecc-----ccEEEEEeCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence            4578899998875     999999999999999999999995          5789999999999999999999863322


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                         .+.++.+|++|.....|+.     +|+              ||||+.   ++      |+  +++||||||++    
T Consensus        90 ---~~~~~~~~~~e~~~~l~~~-----~G~--------------lama~~---~~------~~--sn~SQFfIt~~----  132 (190)
T PRK10903         90 ---QKKPNPPIKNEADNGLRNT-----RGT--------------IAMART---AD------KD--SATSQFFINVA----  132 (190)
T ss_pred             ---CCCCCCcccCcccccCcCC-----CcE--------------EEeCCC---CC------CC--CcccEEEEECc----
Confidence               2234677899965555666     899              999997   64      88  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +++ +||+.                                                        +.+.+|++||+|
T Consensus       133 ---~~~-~ld~~--------------------------------------------------------~~dg~ytvFG~V  152 (190)
T PRK10903        133 ---DNA-FLDHG--------------------------------------------------------QRDFGYAVFGKV  152 (190)
T ss_pred             ---Ccc-cccCC--------------------------------------------------------ccCCCccEEEEE
Confidence               888 88850                                                        001289999999


Q ss_pred             hccccHHHHHhhchhhC-----Ccccccchhh
Q psy6102         247 RQGFGVAREVSYVEAEN-----DKPLVLNQME  273 (426)
Q Consensus       247 ieGldvl~~I~~l~~~~-----~~P~~~i~il  273 (426)
                      ++|++++++|+.+.++.     +.|..++.|.
T Consensus       153 ~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~  184 (190)
T PRK10903        153 VKGMDVADKISQVPTHDVGPYQNVPSKPVVIL  184 (190)
T ss_pred             ecCHHHHHHHHcCCCCCCCCCCCcccCCeEEE
Confidence            99999999999998843     4666555553

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=99.98  E-value=1.1e-32  Score=247.96  Aligned_cols=149  Identities=34%  Similarity=0.546  Sum_probs=131.3

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG   89 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (426)
                      ..+|.|+|+.     |+|+||||++.+|+||+||++||+          .+||+|+.||||+|+|||||||+. ++|+|+
T Consensus         5 ~~~v~i~Ts~-----G~i~ieL~~~~~P~t~~nF~~L~~----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~   68 (171)
T cd01925           5 TGKVILKTTA-----GDIDIELWSKEAPKACRNFIQLCL----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGTGG   68 (171)
T ss_pred             ccEEEEEEcc-----ccEEEEEeCCCChHHHHHHHHHHh----------cCCCCCCEEEEEcCCcEEEccccC-CCCccC
Confidence            4568888875     999999999999999999999995          578999999999999999999986 689999


Q ss_pred             ccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          90 ESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        90 ~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      .+++|.+|++|.. .+.|++     +|+              ||||+.   |       ++  +++||||||++      
T Consensus        69 ~s~~g~~~~~E~~~~~~~~~-----~G~--------------l~ma~~---g-------~~--s~~sqFfIt~~------  111 (171)
T cd01925          69 ESIYGEPFKDEFHSRLRFNR-----RGL--------------VGMANA---G-------DD--SNGSQFFFTLD------  111 (171)
T ss_pred             cccCCCccCcccccCcCCCC-----CcE--------------EEECcC---C-------CC--CcccEEEEEcC------
Confidence            9999999999965 466887     899              999999   8       88  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       +++ +||+                                                             +|++||+|+.
T Consensus       112 -~~~-~ldg-------------------------------------------------------------~~tvFG~V~g  128 (171)
T cd01925         112 -KAD-ELNN-------------------------------------------------------------KHTLFGKVTG  128 (171)
T ss_pred             -CCc-ccCC-------------------------------------------------------------CceEEEEEEE
Confidence             899 9999                                                             9999999983


Q ss_pred             -cccHHHHHhhchh-hCCcccccchhhh
Q psy6102         249 -GFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       249 -Gldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                       ++.++++|+.+.. .+++|..++.+.+
T Consensus       129 ~~~~~v~~i~~~~~~~~~~P~~~i~I~~  156 (171)
T cd01925         129 DTIYNLLKLAEVETDKDERPVYPPKITS  156 (171)
T ss_pred             CcHHHHHHHhcCCcCCCCCcCCCeEEEE
Confidence             4567889999888 4577887766643

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=99.98  E-value=1.7e-32  Score=244.79  Aligned_cols=147  Identities=24%  Similarity=0.302  Sum_probs=115.8

Q ss_pred             eeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCccc
Q psy6102          23 KVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF  102 (426)
Q Consensus        23 ~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~  102 (426)
                      +.|+|+|+||++.||+||+||++||+          .+||+++.||||+|+|||||||+..+.+.+   .++.+|++|..
T Consensus         7 ~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~   73 (164)
T PRK10791          7 NHGDIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEAN   73 (164)
T ss_pred             ccccEEEEEeCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCccc
Confidence            45999999999999999999999995          578999999999999999999986433322   23667888854


Q ss_pred             cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHHHH
Q psy6102         103 KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKL  182 (426)
Q Consensus       103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~~~  182 (426)
                      ...++.     +|+              ||||+.   +.      |+  +++|||||++.       +++ +||..    
T Consensus        74 ~~~~~~-----~G~--------------lsma~~---~~------p~--s~~SQFfI~~~-------~~~-~ld~~----  111 (164)
T PRK10791         74 NGLKNT-----RGT--------------LAMART---QA------PH--SATAQFFINVV-------DND-FLNFS----  111 (164)
T ss_pred             ccccCC-----CcE--------------EEECCC---CC------cC--CccceEEEEec-------Cch-hhccc----
Confidence            333445     798              999998   74      88  99999999999       888 87740    


Q ss_pred             HHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchhh
Q psy6102         183 RKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAE  262 (426)
Q Consensus       183 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~~  262 (426)
                                                            +....           ...|++||+|++|++++++|+.+.+.
T Consensus       112 --------------------------------------~~~~d-----------~~~~tvFG~V~eG~dvl~~I~~~~~~  142 (164)
T PRK10791        112 --------------------------------------GESLQ-----------GWGYCVFAEVVEGMDVVDKIKGVATG  142 (164)
T ss_pred             --------------------------------------ccccC-----------CCCccEEEEEecCHHHHHHHHcCcCC
Confidence                                                  00000           01699999999999999999999884


Q ss_pred             C-----Ccccccchhh
Q psy6102         263 N-----DKPLVLNQME  273 (426)
Q Consensus       263 ~-----~~P~~~i~il  273 (426)
                      .     +.|...+.+.
T Consensus       143 ~~~~~~~~P~~~v~I~  158 (164)
T PRK10791        143 RSGMHQDVPKEDVIIE  158 (164)
T ss_pred             CCCccCCCcCCCeEEE
Confidence            3     5777766554

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=99.97  E-value=5.8e-32  Score=239.62  Aligned_cols=144  Identities=25%  Similarity=0.319  Sum_probs=116.1

Q ss_pred             eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102          22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN  101 (426)
Q Consensus        22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  101 (426)
                      |+.|+|+|+||++.||+||+||++||+          .+||+++.||||+|+|||||||+....+.   ..++.+|++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~   70 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVR----------KGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA   70 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence            456999999999999999999999995          57899999999999999999998743222   23467788886


Q ss_pred             ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHHH
Q psy6102         102 FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVK  181 (426)
Q Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~~  181 (426)
                      ....|+.     +|+              ||||+.   +.      |+  +++|||||+++       +++ +||+.+  
T Consensus        71 ~~~~~~~-----~G~--------------v~ma~~---~~------~~--s~~SqFfI~~~-------~~~-~ld~~~--  110 (155)
T cd01920          71 GNGLSNT-----RGT--------------IAMART---NA------PD--SATSQFFINLK-------DNA-SLDYQN--  110 (155)
T ss_pred             cccccCC-----ceE--------------EEECCC---CC------CC--CccceEEEECC-------Cch-hcCCcc--
Confidence            5555566     788              999998   64      78  99999999999       888 888610  


Q ss_pred             HHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchh
Q psy6102         182 LRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEA  261 (426)
Q Consensus       182 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~  261 (426)
                                                           .                 ...|++||+|++|++++++|+.+++
T Consensus       111 -------------------------------------~-----------------~~~ytvFG~V~eG~dvl~~I~~~~~  136 (155)
T cd01920         111 -------------------------------------E-----------------QWGYTVFGEVTEGMDVVDKIAGVET  136 (155)
T ss_pred             -------------------------------------c-----------------CCCccEEEEEecCHHHHHHHHcCCc
Confidence                                                 0                 0179999999999999999999998


Q ss_pred             hC-----Ccccccchh
Q psy6102         262 EN-----DKPLVLNQM  272 (426)
Q Consensus       262 ~~-----~~P~~~i~i  272 (426)
                      +.     +.|...+.+
T Consensus       137 ~~~~~~~~~p~~~v~i  152 (155)
T cd01920         137 YSFGSYQDVPVQDVII  152 (155)
T ss_pred             cCCCCcCCCcCCCeEE
Confidence            44     355554443

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=99.97  E-value=1.7e-30  Score=234.25  Aligned_cols=136  Identities=27%  Similarity=0.333  Sum_probs=108.2

Q ss_pred             CeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC-------------
Q psy6102          21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT-------------   87 (426)
Q Consensus        21 ~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~-------------   87 (426)
                      .|+.|+|+|+||++.||+||+||++||+          .+||++++||||+|+|||||||+.. +++             
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRVi~~fviQgGdp~~-~~~~~~~~~~~~~~~~   71 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVE----------RGFYDGMEFHRVEGGFVVQTGDPQG-KNPGFPDPETGKSRTI   71 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHH----------hCCcCCCEEEEecCCcEEEecCCCC-CCCCcccccccccccc
Confidence            3678999999999999999999999995          6889999999999999999999963 222             


Q ss_pred             --------CCccccCCCcC-----CccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCcccc
Q psy6102          88 --------GGESIYGPCFE-----DENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGS  154 (426)
Q Consensus        88 --------~~~~~~~~~~~-----~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (426)
                              ++.++++.+++     ++.....|+.     +|+              ||||+.   ++     .|+  +++
T Consensus        72 p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~G~--------------laMa~~---~~-----~~n--s~~  122 (176)
T cd01924          72 PLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNA-----FGA--------------IAMART---EF-----DPN--SAS  122 (176)
T ss_pred             cceecccCCCCCccCcccccccccccccccccCC-----CCe--------------EEEccC---CC-----CCC--Ccc
Confidence                    23345555543     3445556666     788              999998   74     147  999


Q ss_pred             ceEEEEeeccccccC-chhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHh
Q psy6102         155 YQFSCTVSFLNTFTN-NCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLV  233 (426)
Q Consensus       155 sqF~i~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  233 (426)
                      |||||+++ .+...+ +++ |||+                                                        
T Consensus       123 SQFfI~~~-~~~~~~~~~~-~Ldg--------------------------------------------------------  144 (176)
T cd01924         123 SQFFFLLK-DNELTPSRNN-VLDG--------------------------------------------------------  144 (176)
T ss_pred             ceEEEEec-cccccCCCCC-ccCC--------------------------------------------------------
Confidence            99999998 222222 567 8888                                                        


Q ss_pred             hhcccccceechhhccccHHHHHhhc
Q psy6102         234 KKKKKKNGIFGCVRQGFGVAREVSYV  259 (426)
Q Consensus       234 ~~~~~~~~vFG~VieGldvl~~I~~l  259 (426)
                           +|++||+|++||+++++|...
T Consensus       145 -----~ytVFG~VveG~dvl~~I~~g  165 (176)
T cd01924         145 -----RYAVFGYVTDGLDILRELKVG  165 (176)
T ss_pred             -----CceEEEEEecCHHHHHhhcCC
Confidence                 999999999999999999753

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885|consensus

Probab=99.96  E-value=1.5e-30  Score=247.88  Aligned_cols=116  Identities=36%  Similarity=0.570  Sum_probs=106.5

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      .+..-+|.+.|+.     |+|.||||+..||++|.||++||.          .|||+|+.|||++|+|++|||||+ ++|
T Consensus         9 P~ttgkvil~TT~-----G~I~iELW~kE~P~acrnFiqKOG----------egyy~nt~fhrlvp~f~~Qggdp~-~~g   72 (439)
T KOG0885|consen    9 PPTTGKVILKTTK-----GDIDIELWAKECPKACRNFIQLCL----------EGYYDNTEFHRLVPGFLVQGGDPT-GTG   72 (439)
T ss_pred             CCccceEEEEecc-----CceeeeehhhhhhHHHHHHHHHHH----------hccccCceeeeeccchhcccCCCC-CCC
Confidence            3445678888886     999999999999999999999996          588999999999999999999997 899


Q ss_pred             CCCccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          87 TGGESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      +||.||||.+|.+|+. .+.|++     +|+              |+|||.   |       -+  .||||||||++   
T Consensus        73 tGgesiyg~~fadE~h~Rlrf~r-----rGl--------------vgmana---~-------~~--~ngsqFfftl~---  118 (439)
T KOG0885|consen   73 TGGESIYGRPFADEFHPRLRFNR-----RGL--------------VGMANA---G-------ND--DNGSQFFFTLG---  118 (439)
T ss_pred             CCccccccccchhhcCcceeeec-----cce--------------eeeccc---C-------CC--CCCceEEEEec---
Confidence            9999999999999974 677888     999              999999   8       56  89999999999   


Q ss_pred             cccCchhhhhhh
Q psy6102         166 TFTNNCEIHLQR  177 (426)
Q Consensus       166 ~~~~~~~~~l~~  177 (426)
                          ++| ||++
T Consensus       119 ----~~~-el~n  125 (439)
T KOG0885|consen  119 ----DTP-ELNN  125 (439)
T ss_pred             ----CCh-Hhcc
Confidence                999 9999

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=99.96  E-value=4.8e-29  Score=219.26  Aligned_cols=139  Identities=40%  Similarity=0.617  Sum_probs=121.5

Q ss_pred             eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccccCCCcCCcc
Q psy6102          22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN  101 (426)
Q Consensus        22 ~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  101 (426)
                      |+.|+|+|+||++.+|+||+||++||++          ++|+++.||||+|+|+|||||+....+.+  +.++..|++|.
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~   71 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARG----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN   71 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhc----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence            3459999999999999999999999964          57999999999999999999997443322  45678899998


Q ss_pred             cccc-CCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHH
Q psy6102         102 FKLK-GIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNV  180 (426)
Q Consensus       102 ~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~  180 (426)
                      .... |+.     +|+              |||++.   +       ++  +++|||||+++       +++ +||+   
T Consensus        72 ~~~~~~~~-----~G~--------------v~~~~~---~-------~~--~~~sqF~Itl~-------~~~-~ld~---  109 (146)
T cd00317          72 FPLKYHHR-----RGT--------------LSMANA---G-------PN--TNGSQFFITTA-------PTP-HLDG---  109 (146)
T ss_pred             ccCcCcCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEECC-------CCc-ccCC---
Confidence            7655 777     899              999999   8       77  89999999999       888 9999   


Q ss_pred             HHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhch
Q psy6102         181 KLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVE  260 (426)
Q Consensus       181 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~  260 (426)
                                                                                .|++||+|++|++++++|...+
T Consensus       110 ----------------------------------------------------------~~~vfG~V~~G~~vl~~I~~~~  131 (146)
T cd00317         110 ----------------------------------------------------------KHTVFGKVVEGMDVVDKIERGD  131 (146)
T ss_pred             ----------------------------------------------------------CceEEEEEeCCHHHHHHHHcCC
Confidence                                                                      9999999999999999999999


Q ss_pred             hh-CCcccccchh
Q psy6102         261 AE-NDKPLVLNQM  272 (426)
Q Consensus       261 ~~-~~~P~~~i~i  272 (426)
                      ++ ++.|...+.+
T Consensus       132 ~~~~~~P~~~i~I  144 (146)
T cd00317         132 TDENGRPIKPVTI  144 (146)
T ss_pred             CCCCCcCcCceEE
Confidence            94 7888877655

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=99.94  E-value=2.8e-27  Score=210.05  Aligned_cols=148  Identities=39%  Similarity=0.580  Sum_probs=120.3

Q ss_pred             EEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC-ccc
Q psy6102          14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG-ESI   92 (426)
Q Consensus        14 ~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~-~~~   92 (426)
                      ||+++.++  .|+|+||||++.+|+||+||++||+          .++|+|+.||||+|+++||+|++......+. ...
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~----------~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~   68 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT----------SGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST   68 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH----------TTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc----------ccccCCceeecccccceeeeeeccCCCCccccccc
Confidence            56666543  7999999999999999999999996          4679999999999999999999874333111 123


Q ss_pred             cCCCcCCccc--cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102          93 YGPCFEDENF--KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN  170 (426)
Q Consensus        93 ~~~~~~~e~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~  170 (426)
                      .+..+++|..  .+.| .     +|+              |+|++.   +.     .|+  +++|||||+++       +
T Consensus        69 ~~~~~~~E~~~~~~~~-~-----~G~--------------v~~~~~---~~-----~~~--~~~sqF~I~l~-------~  111 (155)
T PF00160_consen   69 GGEPIPDEFNPSLLKH-R-----RGL--------------VSMARS---GK-----DPN--SNGSQFFITLS-------D  111 (155)
T ss_dssp             TBSCBSSSGBTTSSSS-S-----TTE--------------EEEEBS---SS-----STT--EBSSEEEEESS-------C
T ss_pred             Cccccccccccccccc-c-----cee--------------eeeccc---cc-----CCC--CCCceEEeecc-------C
Confidence            3456899974  3444 5     799              999988   61     156  89999999999       9


Q ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102         171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF  250 (426)
Q Consensus       171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl  250 (426)
                      .+ ++|+                                                             .|++||+|++|+
T Consensus       112 ~~-~ld~-------------------------------------------------------------~~~vfG~V~~G~  129 (155)
T PF00160_consen  112 AP-HLDG-------------------------------------------------------------KYTVFGRVIEGM  129 (155)
T ss_dssp             GG-GGTT-------------------------------------------------------------TSEEEEEEEEHH
T ss_pred             CC-cccc-------------------------------------------------------------ceeeeeEEehhH
Confidence            99 9999                                                             999999999999


Q ss_pred             cHHHHHhhchhhCCcccccchhh
Q psy6102         251 GVAREVSYVEAENDKPLVLNQME  273 (426)
Q Consensus       251 dvl~~I~~l~~~~~~P~~~i~il  273 (426)
                      +++++|+...++. +|..++.+.
T Consensus       130 ~vl~~i~~~~~~~-~p~~~v~I~  151 (155)
T PF00160_consen  130 DVLDKIEAGPTDE-RPKQDVTIS  151 (155)
T ss_dssp             HHHHHHHTSBBTT-EBSSTEEEE
T ss_pred             HHHHHHHCCCCCC-ccCCCeEEE
Confidence            9999999988866 777666553

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415|consensus

Probab=99.94  E-value=2.1e-27  Score=224.79  Aligned_cols=142  Identities=36%  Similarity=0.564  Sum_probs=123.1

Q ss_pred             eEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCcc
Q psy6102          12 IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGES   91 (426)
Q Consensus        12 ~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~   91 (426)
                      -|.++|++     |+|||.||.+.+|.||.||++||          |..||+.+.||-|.++|.+|.|||+ ++|.||.|
T Consensus         2 sVlieTtl-----GDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~s   65 (479)
T KOG0415|consen    2 SVLIETTL-----GDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGES   65 (479)
T ss_pred             cEEEEeec-----ccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcce
Confidence            37788876     99999999999999999999999          6789999999999999999999998 79999999


Q ss_pred             ccCC-------CcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeec
Q psy6102          92 IYGP-------CFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSF  163 (426)
Q Consensus        92 ~~~~-------~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~  163 (426)
                      |||.       -|++|+. .+.|.+     -|+              |||++.   |       .+  .+|||||||++ 
T Consensus        66 i~~~lyG~q~rffeaE~~p~l~Hsk-----~G~--------------vsmvs~---g-------~n--~~gSQF~iTlg-  113 (479)
T KOG0415|consen   66 IYGVLYGEQARFFEAEFLPKLKHSK-----MGT--------------VSMVSA---G-------EN--LNGSQFFITLG-  113 (479)
T ss_pred             eeeecccccchhhhhhhcccccccc-----cce--------------EEeecC---C-------cc--cccceEEEEcc-
Confidence            9863       2677764 577777     788              999999   9       67  99999999999 


Q ss_pred             cccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhccccccee
Q psy6102         164 LNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIF  243 (426)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vF  243 (426)
                           ++.. .||+                                                             .|++|
T Consensus       114 -----enLd-yLDg-------------------------------------------------------------~htvf  126 (479)
T KOG0415|consen  114 -----ENLD-YLDG-------------------------------------------------------------KHTVF  126 (479)
T ss_pred             -----cccc-cccc-------------------------------------------------------------cccee
Confidence                 2333 6888                                                             99999


Q ss_pred             chhhccccHHHHHhhchh-hCCcccc
Q psy6102         244 GCVRQGFGVAREVSYVEA-ENDKPLV  268 (426)
Q Consensus       244 G~VieGldvl~~I~~l~~-~~~~P~~  268 (426)
                      |+|.+|++++.+|+.... .+.+|-.
T Consensus       127 GqV~EG~dtl~kiNea~vD~~~rPyk  152 (479)
T KOG0415|consen  127 GQVAEGFDTLTKINEAIVDPKNRPYK  152 (479)
T ss_pred             eehhhhHHHHHHHHHHhcCCCCCccc
Confidence            999999999999998877 4455554

>KOG0543|consensus

Probab=99.85  E-value=1.5e-20  Score=184.08  Aligned_cols=155  Identities=32%  Similarity=0.548  Sum_probs=141.4

Q ss_pred             chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      ++.+..+...++.||.+|+.|+|..|+..|.+|+..+.+...... ++..........++.|+|.|++++++|.+|+..|
T Consensus       202 ~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c  280 (397)
T KOG0543|consen  202 EERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESC  280 (397)
T ss_pred             HHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Confidence            356778999999999999999999999999999999876555444 3333344566789999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCC
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG  425 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~~  425 (426)
                      +++|.++|+|.+|+||+|+|+..+++|+.|+.+|++|++++|+|..+...+..|...++++.++++++|++||...
T Consensus       281 ~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  281 NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999863

>KOG0553|consensus

Probab=99.82  E-value=1.3e-19  Score=171.21  Aligned_cols=125  Identities=23%  Similarity=0.421  Sum_probs=120.3

Q ss_pred             hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      +....++.++..||.+.+.++|.+|+..|++||++                +|.++.+|+|||.+|.++|+|+.|+++|+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------------~P~nAVyycNRAAAy~~Lg~~~~AVkDce  139 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------------DPTNAVYYCNRAAAYSKLGEYEDAVKDCE  139 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------------CCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence            45668999999999999999999999999999999                99999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      .||.+||.+.++|-++|.+|..+|++++|++.|++||+++|+|+..+..|..+...+++..
T Consensus       140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999999999988877655

>KOG4234|consensus

Probab=99.67  E-value=5.4e-16  Score=138.64  Aligned_cols=136  Identities=25%  Similarity=0.367  Sum_probs=123.1

Q ss_pred             chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      ......+..++..||.+|+.|+|.+|...|+.||++++...           .....-+|.|+|.|+++++.++.||.+|
T Consensus        89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----------~e~rsIly~Nraaa~iKl~k~e~aI~dc  157 (271)
T KOG4234|consen   89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----------TEERSILYSNRAAALIKLRKWESAIEDC  157 (271)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence            33455788899999999999999999999999999976544           3455779999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .+||+|+|.+.+|+.+||.+|..+..|++|+++|.+.++++|...++...+.++-..+....++.+.
T Consensus       158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888877776643

>KOG0545|consensus

Probab=99.63  E-value=5.6e-15  Score=135.79  Aligned_cols=159  Identities=25%  Similarity=0.424  Sum_probs=142.7

Q ss_pred             cccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch--hhhhhhcCcchHHHHHHHHHHHHHccCH
Q psy6102         265 KPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAY  342 (426)
Q Consensus       265 ~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~--~~~~~~~~p~~~~~~~nlA~~~~~lg~~  342 (426)
                      +.....+..+.+..+.+.||.+|+.|+|.+|+..|..||-.+......+.  ..++.+++.....++.|.+.|++..++|
T Consensus       167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~  246 (329)
T KOG0545|consen  167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY  246 (329)
T ss_pred             ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence            34445566678899999999999999999999999999999887766544  5667778888999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       343 ~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~-~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      -++++.|+.+|..+|.|.+|||++|.++...=+..+|.++|+++|+++|.-+ .+...+..+..++.+.++..|..+++|
T Consensus       247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~km  326 (329)
T KOG0545|consen  247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKM  326 (329)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999865 566778888888888888999999999


Q ss_pred             hc
Q psy6102         422 FQ  423 (426)
Q Consensus       422 f~  423 (426)
                      |+
T Consensus       327 fs  328 (329)
T KOG0545|consen  327 FS  328 (329)
T ss_pred             cC
Confidence            96

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=1.2e-14  Score=127.48  Aligned_cols=115  Identities=15%  Similarity=0.194  Sum_probs=109.6

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .+...|..+++.|+|++|+.+|.+++.+                +|.+..+|.++|.++.++|++++|+..|+++++++|
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA----------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3667899999999999999999999999                999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +++.+++++|.++..+|++++|+..|++|+++.|+++..+..++.+...+.
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988888877654

>KOG0548|consensus

Probab=99.61  E-value=3.8e-15  Score=149.97  Aligned_cols=117  Identities=25%  Similarity=0.403  Sum_probs=113.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+...+..|+.+|+.|+|..|+.+|++||..                +|.+..+|.|||.||.+++.+..|+.+|+.+++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr----------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR----------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4777888899999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++|++.++|+|.|.|+..+.+|+.|++.|+++++++|++.++...+.+|...+
T Consensus       421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998864

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.57  E-value=3.3e-14  Score=142.82  Aligned_cols=118  Identities=17%  Similarity=0.313  Sum_probs=113.1

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..++..|+.+|..++|.+|+.+|.+||++                +|.+..+|+++|.+++++|++++|+.++++||.++
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL----------------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45778899999999999999999999999                99999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      |+++.+|+++|.+++.+|+|++|+.+|+++++++|++..+...++.|...+.+.
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998888553

>KOG4648|consensus

Probab=99.55  E-value=1.2e-14  Score=139.12  Aligned_cols=119  Identities=28%  Similarity=0.357  Sum_probs=112.1

Q ss_pred             hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      ..++.+..+++.||.||++|.|++||.+|.+++.+                .|.++..+.|||.+|++++.|..|..+|+
T Consensus        92 ~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~  155 (536)
T KOG4648|consen   92 QLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV----------------YPHNPVYHINRALAYLKQKSFAQAEEDCE  155 (536)
T ss_pred             HHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc----------------CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence            33556677899999999999999999999999999                99999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      .|+.||..+.+||.+||.+...+|...+|.++++.+|+|+|++.+....++.+..
T Consensus       156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999988888777765

>KOG0547|consensus

Probab=99.54  E-value=5.6e-14  Score=139.97  Aligned_cols=129  Identities=22%  Similarity=0.273  Sum_probs=113.4

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      .++..+.+..++..||.+|+.|+|++||.+|++||++                .|.-+..|.|||.||..+|+|++.+++
T Consensus       108 ~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------------~p~epiFYsNraAcY~~lgd~~~Vied  171 (606)
T KOG0547|consen  108 KEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------------CPDEPIFYSNRAACYESLGDWEKVIED  171 (606)
T ss_pred             hHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------------CCCCchhhhhHHHHHHHHhhHHHHHHH
Confidence            4555778999999999999999999999999999999                788899999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      |.+||+++|++++||+||+.++..+|++++|+.+.....-++ -+|..+.-.+.+++..+++.+..
T Consensus       172 ~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~  237 (606)
T KOG0547|consen  172 CTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAK  237 (606)
T ss_pred             HHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987554433 36677777777777766655443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.52  E-value=2.7e-13  Score=118.68  Aligned_cols=105  Identities=9%  Similarity=0.124  Sum_probs=99.8

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      .+..+..+..|..+++.|++++|...|+....+                +|.+...|+++|.|+..+|+|.+|+..|.+|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            346778999999999999999999999999999                9999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      +.++|+++.++++.|.|++.+|+.+.|++.|+.|+.+.-.+
T Consensus        96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999987333

>KOG4626|consensus

Probab=99.51  E-value=1.2e-13  Score=140.72  Aligned_cols=153  Identities=19%  Similarity=0.175  Sum_probs=113.1

Q ss_pred             ccceechhhccccHHHH-Hhhchh-hCCcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhh
Q psy6102         239 KNGIFGCVRQGFGVARE-VSYVEA-ENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT  316 (426)
Q Consensus       239 ~~~vFG~VieGldvl~~-I~~l~~-~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~  316 (426)
                      .|.-.|.|.+.+...+. +..... -+-+|.       .+..+-++|-+|+.+|+.+.||..|++||++           
T Consensus       254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-----------  315 (966)
T KOG4626|consen  254 AYINLGNVYKEARIFDRAVSCYLRALNLRPN-------HAVAHGNLACIYYEQGLLDLAIDTYKRALEL-----------  315 (966)
T ss_pred             HHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-------chhhccceEEEEeccccHHHHHHHHHHHHhc-----------
Confidence            66667777664443322 222211 223333       6677888888888888888889888888888           


Q ss_pred             hhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102         317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  396 (426)
Q Consensus       317 ~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a  396 (426)
                           +|..+.+|+|+|.++-..|+..+|..+|++||.+.|+++++++++|.++..+|.+++|...|.+|++..|+-.++
T Consensus       316 -----~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa  390 (966)
T KOG4626|consen  316 -----QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA  390 (966)
T ss_pred             -----CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence                 778888888888888888888888888888888888888888888888888888888888788888777777777


Q ss_pred             HHHHHHHHHHHhhHHHHH
Q psy6102         397 LKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       397 ~~~l~~i~~~l~~~~~a~  414 (426)
                      ..+|+.+++..++.+++.
T Consensus       391 ~nNLa~i~kqqgnl~~Ai  408 (966)
T KOG4626|consen  391 HNNLASIYKQQGNLDDAI  408 (966)
T ss_pred             hhhHHHHHHhcccHHHHH
Confidence            777777777777777664

>KOG0550|consensus

Probab=99.49  E-value=9e-14  Score=136.17  Aligned_cols=139  Identities=20%  Similarity=0.374  Sum_probs=117.3

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      .-...+..+.+++.||.+|++|+|..|.++|+.||.+-|..            ...++.+|.|||.+..++|+..+|+.+
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------------~~~naklY~nra~v~~rLgrl~eaisd  309 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------------KKTNAKLYGNRALVNIRLGRLREAISD  309 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------------cchhHHHHHHhHhhhcccCCchhhhhh
Confidence            33445577889999999999999999999999999983221            345677999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      |+.|+.|||.+.++|.++|.|+..++++++|+++|++|+++.-+ .+....+..+...+++.   .|+.|++..+
T Consensus       310 c~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS---kRkd~ykilG  380 (486)
T KOG0550|consen  310 CNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS---KRKDWYKILG  380 (486)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh---hhhhHHHHhh
Confidence            99999999999999999999999999999999999999999876 77777777766665543   4455665544

>KOG4626|consensus

Probab=99.49  E-value=1.2e-13  Score=140.60  Aligned_cols=130  Identities=19%  Similarity=0.244  Sum_probs=124.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+.+|+++|++|-..+.|+.|+.+|.+|+.+                .|.++.++.|+|.+|+..|..+-||..|+++|
T Consensus       250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----------------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNL----------------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----------------CCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence            36788999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      +++|+.++||.++|.++..+|+..+|..+|.+||.+.|.++.+..+|+.+++.+++.+++.+ +|.+
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~  379 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLK  379 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987 4443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.47  E-value=1.3e-12  Score=112.14  Aligned_cols=117  Identities=15%  Similarity=0.272  Sum_probs=108.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+.....+|..+++.+++++|+..|++++..                +|.+..++.++|.++..+|++++|+.+++++++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   79 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY----------------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA   79 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456789999999999999999999999998                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++|.++..++.+|.++..+|++++|+..|+++++++|++.........+...+
T Consensus        80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998777766665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548|consensus

Probab=99.43  E-value=4.9e-13  Score=134.85  Aligned_cols=113  Identities=19%  Similarity=0.326  Sum_probs=110.0

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..++..||.+|..|+|+.|+.+|++||.+                +|.+-.+|.|+..||..+|+|++|+++..+.+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l----------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l   65 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIML----------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL   65 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHcc----------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456789999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      +|+++++|.++|.++..+|+|++|+..|.+.|+.+|+|+.....+..++
T Consensus        66 ~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   66 NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999999999999999999999998

>KOG1126|consensus

Probab=99.42  E-value=5.8e-13  Score=137.20  Aligned_cols=142  Identities=18%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAV  335 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~  335 (426)
                      ..++.|...||.|.-+++++.||++|++|+++.+.+.=+                  .....+...+|.+-.+|+.+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            367899999999999999999999999999983211100                  00233445566666666666666


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      |+++++++.|.-.+++|+.++|.+...+...|.++..+|+.++|+..|++|+.++|.|+......+.++..++++.++..
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~  578 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ  578 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666665544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=4.7e-12  Score=124.16  Aligned_cols=105  Identities=19%  Similarity=0.164  Sum_probs=102.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++.+|..+...|++++|+..|++|+++                +|.++.+|+++|.++..+|++++|+..++++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      ++|++..+|+++|.++...|++++|+++|+++++++|+++.
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999974

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.39  E-value=7.2e-12  Score=134.90  Aligned_cols=142  Identities=8%  Similarity=0.056  Sum_probs=100.2

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAV  335 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~  335 (426)
                      ..+..+..+|..++..|++++|+..|.+++++.+.....                  ...+...+++|.++.+|+++|.+
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456678888999999999999999999999873321111                  00233445567777777777777


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++.+|++++|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++.+.|+++.++..++.++..+++.+++.+
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  488 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE  488 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.35  E-value=1.9e-11  Score=131.66  Aligned_cols=123  Identities=10%  Similarity=0.158  Sum_probs=98.5

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQL  337 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~~  337 (426)
                      ...+..+|..++..|++++|+..|.++++..+.....                  ...+....++|.+..++.++|.++.
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            4456666666677777777777777766653222111                  1134455569999999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         338 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       338 ~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      ++|++++|+..+++++++.|+++.+++.+|.++..+|++++|++.|++|++++|.+.....
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~  505 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM  505 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc
Confidence            9999999999999999999999999999999999999999999999999999998655443

>KOG1155|consensus

Probab=99.35  E-value=1.3e-11  Score=122.71  Aligned_cols=124  Identities=20%  Similarity=0.213  Sum_probs=114.7

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ++...-.||-|.-++++++|+.+|++|+++                +|....+|..+|.-|+.|++...|++.|++|+++
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi  393 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKL----------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI  393 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhc----------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence            345677899999999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|.+..|||.+|++|..++-..-|+-+|++|+++.|+|+.+|..|+.|+..+.+.++|.+
T Consensus       394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888876

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=1.4e-11  Score=113.81  Aligned_cols=110  Identities=17%  Similarity=0.216  Sum_probs=101.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHH-HHccC--HHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ-LKFKA--YKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~-~~lg~--~~~Ai~~~~~  351 (426)
                      .+..|..+|..+...|++++|+..|.+|+++                .|.+..++.++|.++ ...|+  +++|++.+++
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~  135 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQL----------------RGENAELYAALATVLYYQAGQHMTPQTREMIDK  135 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            6778999999999999999999999999999                999999999999985 67787  5999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      +++++|+++.+++.+|.+++.+|++++|+.+|+++++++|.+..-...+
T Consensus       136 al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        136 ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            9999999999999999999999999999999999999999776444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.31  E-value=6.9e-11  Score=109.14  Aligned_cols=118  Identities=11%  Similarity=0.038  Sum_probs=109.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  367 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg  367 (426)
                      ..++.++++..+.++++.                +|.+...|..+|.+|+.+|++++|+..|++|++++|+++.+++.+|
T Consensus        51 ~~~~~~~~i~~l~~~L~~----------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA  114 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRA----------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA  114 (198)
T ss_pred             CchhHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            367789999999999999                9999999999999999999999999999999999999999999999


Q ss_pred             HHH-HHcCC--hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         368 RAQ-VSMNN--FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       368 ~a~-~~lg~--~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      .++ ...|+  +++|.+.++++++++|++..++..++.+....++++++.. .|+++.
T Consensus       115 ~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL  171 (198)
T PRK10370        115 TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVL  171 (198)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            986 67787  5999999999999999999999999999999999999876 555543

>KOG1126|consensus

Probab=99.30  E-value=2.8e-11  Score=124.95  Aligned_cols=129  Identities=17%  Similarity=0.289  Sum_probs=123.5

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +.-.+|+.+|.+|.++++++.|.-+|++|+++                +|.+..+.+.+|..+.++|+.++|+..+++|+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI----------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcC----------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            35678999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY  418 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~  418 (426)
                      .+||.++-..|.+|.+++.++++++|+..+++..++.|++..+...++++++++++...|.++.-
T Consensus       551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~  615 (638)
T KOG1126|consen  551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS  615 (638)
T ss_pred             hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999998876543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.29  E-value=5.1e-11  Score=104.39  Aligned_cols=102  Identities=12%  Similarity=0.087  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy6102         296 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN  375 (426)
Q Consensus       296 i~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~  375 (426)
                      ..+|++|+++                +|.+   +.++|.++.++|++++|+..|++++.++|.+..+|+.+|.++..+|+
T Consensus        13 ~~~~~~al~~----------------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLLSV----------------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHHHc----------------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            3568888887                7765   66899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         376 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       376 ~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      +++|+..|++|+.++|++..++..++.++..+++.+++...
T Consensus        74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~  114 (144)
T PRK15359         74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA  114 (144)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999998753

>KOG0551|consensus

Probab=99.29  E-value=2e-11  Score=116.93  Aligned_cols=109  Identities=26%  Similarity=0.402  Sum_probs=95.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .|+.+++.||.||+.++|..|+..|+++|..-..            -...++.+|.|||.|.+.+|+|..|+.+|.+|+.
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~------------D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCA------------DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCC------------CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999986211            1356788999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      ++|++.++++|-|.|++.+.++.+|+..++..+.++-+...
T Consensus       148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            99999999999999999999988888777766665544433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.28  E-value=1.4e-11  Score=93.45  Aligned_cols=67  Identities=27%  Similarity=0.556  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLP  391 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg-~~~~Al~~l~kAl~l~P  391 (426)
                      ++.+|.++|.+++++++|++|+.+|+++|+++|+++.+|+++|.++..+| ++++|+++|++|++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            47789999999999999999999999999999999999999999999999 79999999999999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.27  E-value=7.9e-11  Score=98.05  Aligned_cols=110  Identities=12%  Similarity=0.095  Sum_probs=99.3

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      +..++..|..+++.|+|++|+..|.+++..                .|.+   ..+++.+|.++++.+++++|+..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK----------------YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            356889999999999999999999999987                4443   678999999999999999999999999


Q ss_pred             HHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         353 LLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       353 L~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      +..+|++   ..+++.+|.++..++++++|+..|+++++..|++..+.....
T Consensus        66 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        66 VKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            9999885   788999999999999999999999999999999987665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155|consensus

Probab=99.26  E-value=1.1e-10  Score=116.17  Aligned_cols=131  Identities=18%  Similarity=0.264  Sum_probs=122.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ...+|--+|..|...++-..|+..|.+|+++                +|.+-++|+.+|.+|--|+...-|+-++++|++
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi----------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI----------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            4567889999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      +.|++...|..+|.||..+++.++|+.+|.+|+....-+..++..|+.++..+++..++.. .|.+++
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~-~yek~v  493 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ-YYEKYV  493 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH-HHHHHH
Confidence            9999999999999999999999999999999999988899999999999999999988864 444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.24  E-value=4e-10  Score=103.47  Aligned_cols=124  Identities=15%  Similarity=0.194  Sum_probs=92.4

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..++..|++++|+..|.++++.                .|.+..++.++|.++..+|++++|+..+.+++..
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  128 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTL----------------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED  128 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            344455555555555555555555555555                6777778888888888888888888888888875


Q ss_pred             C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         356 E--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       356 d--p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .  +.....++.+|.++...|++++|...|++++..+|++..++..++.++...++.+++..
T Consensus       129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       129 PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            3  45567788888888888888888888888888888888888888888888888877764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=1.5e-10  Score=123.09  Aligned_cols=126  Identities=8%  Similarity=-0.016  Sum_probs=103.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..+...|++++|+..|++|+++                +|.++.+++++|.++..+|++++|+..++++++
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~  400 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL----------------SPISADIKYYYGWNLFMAGQLEEALQTINECLK  400 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4556777788888888888888888888888                888888888888888888888888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ++|.++.+++.++.+++.+|++++|+..++++++.. |+++.++..++.++..+|+.++|...
T Consensus       401 l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~  463 (553)
T PRK12370        401 LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL  463 (553)
T ss_pred             cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            888888777777777777888888888888888774 67788888888888888888777654

>KOG0376|consensus

Probab=99.23  E-value=1.1e-11  Score=124.18  Aligned_cols=121  Identities=26%  Similarity=0.358  Sum_probs=115.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+...++.+|..+.|+.|+..|.+||++                +|..+.++.+||.++++.++|..|+.++.+|++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l----------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie   66 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL----------------DPNCAIYFANRALAHLKVESFGGALHDALKAIE   66 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhc----------------CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence            4677889999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      ++|...++|+++|.+.+.++++.+|+.+|++...+.|+++.+...+..|.....+++
T Consensus        67 ~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   67 LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998876643

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=1.7e-10  Score=122.77  Aligned_cols=112  Identities=17%  Similarity=0.118  Sum_probs=102.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  367 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg  367 (426)
                      ..+++.+|+..+.+|+++                +|.++.++..+|.++...|++++|+..|++|++++|+++.+|+.+|
T Consensus       316 ~~~~~~~A~~~~~~Al~l----------------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  379 (553)
T PRK12370        316 KQNAMIKAKEHAIKATEL----------------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG  379 (553)
T ss_pred             cchHHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456799999999999999                9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .++..+|++++|+..+++|++++|.+..+...+..+....++++++..
T Consensus       380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~  427 (553)
T PRK12370        380 WNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR  427 (553)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence            999999999999999999999999998776666666667788776654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.22  E-value=1.7e-10  Score=124.42  Aligned_cols=130  Identities=6%  Similarity=-0.084  Sum_probs=123.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|....+.|.+++|...+..++++                .|++..++.++|.++.+++++++|+..++++|.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR----------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            5788999999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      .+|+++.+++.+|.++..+|++++|++.|++++..+|+++.++..++.+++.+|+.++|.. +|++.
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a  214 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAG  214 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998864 44443

>KOG4642|consensus

Probab=99.21  E-value=4.7e-11  Score=109.84  Aligned_cols=101  Identities=25%  Similarity=0.388  Sum_probs=97.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+++.|+.+|..+.|..||.+|.+||.+                +|..+..|.|+|.||+++++++.+..+|.+|+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------------nP~~~~Y~tnralchlk~~~~~~v~~dcrral   71 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL   71 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhc----------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence            46788999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                      +++|+.++++|.+|.+++....|++|+..+++|..+.
T Consensus        72 ql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   72 QLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             hcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999997763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.21  E-value=2.3e-10  Score=127.90  Aligned_cols=122  Identities=7%  Similarity=0.014  Sum_probs=72.2

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .+..+|..+.+.|++++|+..|.+++++                +|.++.++.++|.++..+|++++|+..+++|++++|
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l----------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALEL----------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3444455555555555555555555554                666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++.+++++|.++..+|++++|+.+|++|++++|++..+....+.+.......+++.+
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666655555555544444443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.20  E-value=4.7e-10  Score=103.02  Aligned_cols=126  Identities=11%  Similarity=0.108  Sum_probs=113.6

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...+..+|..++..|++++|+..|.++++...              .+....++.++|.++...|++++|+..+.+++..
T Consensus        99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  164 (234)
T TIGR02521        99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQI  164 (234)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34577889999999999999999999997510              3566788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|.+..+++.+|.++...|++++|+..+++++.+.|.+...+..+..+....++.+++..
T Consensus       165 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (234)
T TIGR02521       165 DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR  224 (234)
T ss_pred             CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999999999999999999999999888899888888777654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.18  E-value=7.9e-10  Score=101.61  Aligned_cols=130  Identities=18%  Similarity=0.169  Sum_probs=99.6

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      .......+.....+|..|++.|++..|...+++||+.                +|.+..+|..||.+|.++|+.+.|-+.
T Consensus        28 ~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~----------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~   91 (250)
T COG3063          28 QTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH----------------DPSYYLAHLVRAHYYQKLGENDLADES   91 (250)
T ss_pred             cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcCChhhHHHH
Confidence            3455567888999999999999999999999999999                888888888888888888888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      |++||.++|++.+++.+.|.-++.+|++++|...|++|+..  .|.-...+.+++.|..+.++..+++
T Consensus        92 YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~  159 (250)
T COG3063          92 YRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE  159 (250)
T ss_pred             HHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence            88888888888777777777666667766666666666652  3344556666666666666655554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.17  E-value=4.7e-10  Score=125.46  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=101.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  367 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg  367 (426)
                      ..|++++|+..|.+|+++                +|. ..++.++|.++.++|++++|+..+.+++.++|+++.+++++|
T Consensus       588 ~~Gr~~eAl~~~~~AL~l----------------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG  650 (987)
T PRK09782        588 IPGQPELALNDLTRSLNI----------------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG  650 (987)
T ss_pred             hCCCHHHHHHHHHHHHHh----------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            336666666666666665                886 899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .++..+|++++|++.|++|++++|+++.++..++.++..+++.+++..
T Consensus       651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999999999998876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=2.6e-10  Score=88.36  Aligned_cols=99  Identities=33%  Similarity=0.546  Sum_probs=91.4

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .++.+|..++..|++++|+..+.++++.                .|....++..+|.++...+++++|+..+++++.+.|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL----------------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4678889999999999999999999988                777778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~  392 (426)
                      .+..+++.+|.++..+|++++|...++++++++|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999988874

>PRK15331 chaperone protein SicA; Provisional

Probab=99.17  E-value=3e-10  Score=100.03  Aligned_cols=119  Identities=16%  Similarity=0.270  Sum_probs=108.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ..+..+..|..+|+.|+|++|...|+-...+                ++.+.+.|..+|.|+..+++|++|+..|..|..
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~   99 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT   99 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999999999999999999988888                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      ++++++...|+.|+|++.+|+.+.|+.+|+.|+. .|.+..+...-...+..+.+.
T Consensus       100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~  154 (165)
T PRK15331        100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTA  154 (165)
T ss_pred             cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999998 688877777666666655543

>KOG0547|consensus

Probab=99.16  E-value=1.9e-10  Score=115.12  Aligned_cols=143  Identities=14%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAA  334 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~  334 (426)
                      ...++.+...|..+|-.|++-.|...++++|.+.+....-                  .....+..++|.++++|+.||.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            4468899999999999999999999999999983322220                  0023344445555555555555


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      +++-+++|++|+.+|++++.|+|.++-++..++.+++++++++++...|+.+++..|..+++....++++...++..++.
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555544444444


Q ss_pred             H
Q psy6102         415 K  415 (426)
Q Consensus       415 k  415 (426)
                      +
T Consensus       483 k  483 (606)
T KOG0547|consen  483 K  483 (606)
T ss_pred             H
Confidence            3

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.15  E-value=6.5e-10  Score=95.33  Aligned_cols=94  Identities=16%  Similarity=0.155  Sum_probs=91.4

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      +|.+..+...+|.+++..|++++|+..+++++.++|.++.+++++|.++..+|++++|+..|++++.++|.+...+..++
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la   92 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA   92 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHH
Q psy6102         402 FVRKQMRHHLNLEK  415 (426)
Q Consensus       402 ~i~~~l~~~~~a~k  415 (426)
                      .++...++.+++.+
T Consensus        93 ~~~~~~g~~~~A~~  106 (135)
T TIGR02552        93 ECLLALGEPESALK  106 (135)
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999999988865

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.15  E-value=1e-09  Score=107.59  Aligned_cols=117  Identities=9%  Similarity=-0.015  Sum_probs=104.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  367 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg  367 (426)
                      .....+.++..+.++|...+-            -.+..+..|+++|.++..+|++++|+.+|+++++++|+++.+|+.+|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~------------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  105 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDL------------TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG  105 (296)
T ss_pred             CchHHHHHHHHHHHHHccccC------------CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            345788899999999964210            03455889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .++..+|++++|++.|+++++++|++..++.+++.++...++.+++.+.
T Consensus       106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~  154 (296)
T PRK11189        106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD  154 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999988753

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.14  E-value=1.4e-10  Score=87.85  Aligned_cols=67  Identities=22%  Similarity=0.363  Sum_probs=64.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL  353 (426)
                      .+..|..+|..++..++|++|+.+|++||++                +|.++.+|+++|.|+.++| ++.+|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            4678999999999999999999999999999                9999999999999999999 7999999999999


Q ss_pred             HhCC
Q psy6102         354 LMEP  357 (426)
Q Consensus       354 ~ldp  357 (426)
                      +++|
T Consensus        66 ~l~P   69 (69)
T PF13414_consen   66 KLDP   69 (69)
T ss_dssp             HHST
T ss_pred             HcCc
Confidence            9998

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.14  E-value=9e-10  Score=99.24  Aligned_cols=107  Identities=17%  Similarity=0.182  Sum_probs=96.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..++.+|..+...|++++|+.+|.++++..+.             .+....++.++|.++.++|++++|+..+.+++
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   99 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-------------PNDRSYILYNMGIIYASNGEHDKALEYYHQAL   99 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778999999999999999999999999987221             12246799999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHhCCCc
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNN--------------FEQGLQDYEQALDLLPND  393 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~--------------~~~Al~~l~kAl~l~P~n  393 (426)
                      .+.|.+..++..+|.++..+|+              +.+|++++++++.++|++
T Consensus       100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999999999999988              688999999999999987

>KOG0624|consensus

Probab=99.14  E-value=4.7e-10  Score=108.05  Aligned_cols=111  Identities=23%  Similarity=0.310  Sum_probs=103.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .++..+++|+.++..+++..|+..|-.|++.                +|.+-.+++.||-+|+.+|+-..|+.++.++|+
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            5677899999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      +.|+..-|...+|.+++.+|.+++|..+|.++|.-+|++...+....
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs  147 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS  147 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence            99999999999999999999999999999999999997654444333

>KOG1125|consensus

Probab=99.13  E-value=1.4e-10  Score=118.20  Aligned_cols=121  Identities=12%  Similarity=0.163  Sum_probs=112.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .++...-+|..|+-.++|+.|+++|+.||..                +|.+..+|..+|.++..-.+..+||..|++||+
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v----------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQV----------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhc----------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            4566788999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHhhHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----------DQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~----------n~~a~~~l~~i~~~l~~~~  411 (426)
                      |.|.++.++|++|.+++.+|.|.+|+++|-.||.+.+.          +..+|..|+.+...+++.+
T Consensus       493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            99999999999999999999999999999999999876          2358888988888877766

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.13  E-value=1.8e-10  Score=111.79  Aligned_cols=126  Identities=21%  Similarity=0.211  Sum_probs=106.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..|...|..+.+.|++++|+..|++|+++                +|.+..+...++.++..+|+++++.+.+....
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~  207 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL----------------DPDDPDARNALAWLLIDMGDYDEAREALKRLL  207 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            46778999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +..|.++..+..+|.++..+|++++|+..|++++..+|+|+.++..++.++...|+.+++..
T Consensus       208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             HHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98899999999999999999999999999999999999999999999999999999998875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.11  E-value=1.4e-09  Score=118.00  Aligned_cols=123  Identities=15%  Similarity=0.135  Sum_probs=86.4

Q ss_pred             HHHHhccchhhhhhhHHH----HHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLNRMHD----AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~----Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ..+..+|..++..|++++    |+..|++++++                +|.+..++.++|.++.+.|++++|+..++++
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF----------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344555666666666653    56666666655                7777777777777777777777777777777


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.++|+++.+++.+|.++..+|++++|+..|++++..+|++..+...++.++..+++.+++..
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence            777777777777777777777777777777777777777776666666666677777666654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=1.9e-09  Score=101.55  Aligned_cols=110  Identities=16%  Similarity=0.255  Sum_probs=99.4

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      ...+..++..|..++..|+|++|+..|.+++..                .|.+   ..+++.+|.++++++++++|+..+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~   93 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR----------------YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAA   93 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCchhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            446788999999999999999999999999998                5554   468899999999999999999999


Q ss_pred             HHHHHhCCCCHH---HHHHHHHHHHHc--------CChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         350 DDILLMEPNNVK---ALFRRGRAQVSM--------NNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       350 ~~AL~ldp~~~k---al~~lg~a~~~l--------g~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      +++++..|+++.   +++.+|.++..+        |++++|++.|++++..+|++..+..
T Consensus        94 ~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  153 (235)
T TIGR03302        94 DRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD  153 (235)
T ss_pred             HHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence            999999998876   799999999887        8899999999999999999976543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.10  E-value=2.4e-10  Score=90.38  Aligned_cols=82  Identities=22%  Similarity=0.386  Sum_probs=73.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  365 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~  365 (426)
                      .+++|+.|+..|.++++.                .|.  +..+++++|.|++++|+|++|+..+++ ++.+|.+...++.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~----------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l   63 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLEL----------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYL   63 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHH----------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHH----------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHH
Confidence            368999999999999998                442  677888999999999999999999999 9999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHH
Q psy6102         366 RGRAQVSMNNFEQGLQDYEQA  386 (426)
Q Consensus       366 lg~a~~~lg~~~~Al~~l~kA  386 (426)
                      +|.|+..+|++++|++.|++|
T Consensus        64 ~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   64 LARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHhcC
Confidence            999999999999999999876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.10  E-value=1.6e-09  Score=117.39  Aligned_cols=124  Identities=11%  Similarity=0.068  Sum_probs=113.6

Q ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhC
Q psy6102         281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR----AINLCDDILLME  356 (426)
Q Consensus       281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~----Ai~~~~~AL~ld  356 (426)
                      ..+..+...|++++|+..|.++++.                .|.+..++.++|.++.++|++++    |+..|+++++++
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~----------------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALAR----------------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            4466778888899999999998887                89999999999999999999996    899999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      |+++.++..+|.++..+|++++|+..++++++++|++..++..++.++...++.+++... |.++
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-l~~a  344 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-FVQL  344 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHH
Confidence            999999999999999999999999999999999999999999999999999999988753 4443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.10  E-value=1.3e-09  Score=101.93  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=118.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ....+...|...+..|+|..|+..+.+|..+                .|.+.++|..+|.+|.++|++++|...|.++++
T Consensus        99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~  162 (257)
T COG5010          99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL----------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALE  162 (257)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHH
Confidence            3445666999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.|.++.++.++|..|...|+++.|...+..+...-+.+..+..++..+....++..++++
T Consensus       163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            9999999999999999999999999999999999988999999999999999999888764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.08  E-value=3.1e-09  Score=93.22  Aligned_cols=100  Identities=13%  Similarity=0.083  Sum_probs=93.1

Q ss_pred             hcC-cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         320 HFR-SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       320 ~~~-p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      .+. +...+..+.+|..++..|++++|...|+.++.+||.+...|+++|.|+..+|+|++|+..|.+|+.++|+|+....
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            346 7788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHh
Q psy6102         399 EIAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       399 ~l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      +++.|+..+++...+.+ .|+.
T Consensus       108 ~ag~c~L~lG~~~~A~~-aF~~  128 (157)
T PRK15363        108 AAAECYLACDNVCYAIK-ALKA  128 (157)
T ss_pred             HHHHHHHHcCCHHHHHH-HHHH
Confidence            99999999999988765 4443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.06  E-value=2.3e-09  Score=117.90  Aligned_cols=129  Identities=18%  Similarity=0.229  Sum_probs=107.7

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...+..+|..+...|++++|+..|+++++.                .|.++.++.++|.++.+.|+ .+|+..+++++.+
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKK----------------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            445566667777777777777777777766                78888889999999999998 8899999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      .|+++..+..+|.++..+|++++|++.|+++++++|.++.+...+..++...++.+++.. .+++|.
T Consensus       833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~  898 (899)
T TIGR02917       833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK-ELDKLL  898 (899)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHh
Confidence            999999999999999999999999999999999999999999999999999988888765 555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.06  E-value=5.9e-10  Score=83.51  Aligned_cols=65  Identities=26%  Similarity=0.449  Sum_probs=61.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999985

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=3.1e-09  Score=95.26  Aligned_cols=108  Identities=18%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+...|..++..++|++|+..|.+|+.+.+.             .+..+.++.++|.++..+|++++|+..|.+++
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36788999999999999999999999999988210             12245699999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHHhCCCcH
Q psy6102         354 LMEPNNVKALFRRGRAQV-------SMNNFE-------QGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~-------~lg~~~-------~Al~~l~kAl~l~P~n~  394 (426)
                      .++|.+..+++++|.++.       .+|+++       +|+..|++++.++|.+.
T Consensus       100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999       777766       56666667788888654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.05  E-value=4.2e-09  Score=99.18  Aligned_cols=130  Identities=12%  Similarity=0.129  Sum_probs=112.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchH---HHHHHHHHHHHHc--------cCHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT---AALLNMAAVQLKF--------KAYK  343 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~---~~~~nlA~~~~~l--------g~~~  343 (426)
                      ....++.+|..+++.+++++|+..|.++++.                .|.+.   .+++.+|.++.++        ++++
T Consensus        69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~  132 (235)
T TIGR03302        69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----------------HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAR  132 (235)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------------CcCCCchHHHHHHHHHHHHHhcccccCCHHHHH
Confidence            3457889999999999999999999999998                55444   4799999999987        8999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Q psy6102         344 RAINLCDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFV  403 (426)
Q Consensus       344 ~Ai~~~~~AL~ldp~~~kal-----------------~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~l~~i  403 (426)
                      +|++.+++++..+|++..++                 +.+|.+++..|++.+|+..|++++...|++   ..++..++.+
T Consensus       133 ~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~  212 (235)
T TIGR03302       133 EAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA  212 (235)
T ss_pred             HHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence            99999999999999986542                 467889999999999999999999997764   5899999999


Q ss_pred             HHHHhhHHHHHHHHHHhh
Q psy6102         404 RKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       404 ~~~l~~~~~a~k~~~~k~  421 (426)
                      +..+++.+++.. .+..+
T Consensus       213 ~~~lg~~~~A~~-~~~~l  229 (235)
T TIGR03302       213 YLKLGLKDLAQD-AAAVL  229 (235)
T ss_pred             HHHcCCHHHHHH-HHHHH
Confidence            999999998875 44443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=99.05  E-value=5e-09  Score=103.64  Aligned_cols=117  Identities=11%  Similarity=0.054  Sum_probs=109.1

Q ss_pred             HHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCH--HHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY--KRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~--~~Ai~~~~~  351 (426)
                      ....|..+|..+...+ ++++|+..+.++++.                +|.+..+|.+++.++.+++..  ++++..+++
T Consensus        70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----------------npknyqaW~~R~~~l~~l~~~~~~~el~~~~k  133 (320)
T PLN02789         70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED----------------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRK  133 (320)
T ss_pred             hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----------------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence            5667888888888888 689999999999999                999999999999999999974  788999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      +|+++|+|..+|..++.++..++++++|++++.++|+++|.|..++.....+...+
T Consensus       134 al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        134 ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999887665

>KOG0624|consensus

Probab=99.04  E-value=1.4e-08  Score=98.05  Aligned_cols=200  Identities=12%  Similarity=0.138  Sum_probs=152.3

Q ss_pred             hhhhhchhhhhHhhhcchHHHhh-hccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchhhCCcccccch
Q psy6102         193 EAKHYYNQGALEKKRGITEHKKK-LETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQ  271 (426)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~~~~~P~~~i~  271 (426)
                      ...|+..+..+.....+..++.. .-+..|+|.   -|.++.+.-. -|..+|+-..++.-++.+..+.+          
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~---~Y~aifrRaT-~yLAmGksk~al~Dl~rVlelKp----------  103 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPN---NYQAIFRRAT-VYLAMGKSKAALQDLSRVLELKP----------  103 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---hHHHHHHHHH-HHhhhcCCccchhhHHHHHhcCc----------
Confidence            35688888888888888888888 466666654   3455554433 56777776655554544444333          


Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc---------------------------------chhhhh
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS---------------------------------QSKTQQ  318 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~---------------------------------~~~~~~  318 (426)
                        +..-+..++|+++.++|.+++|+..|.+.|..-+.....                                 ......
T Consensus       104 --DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l  181 (504)
T KOG0624|consen  104 --DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL  181 (504)
T ss_pred             --cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence              244556788999999999999999998888743211111                                 012345


Q ss_pred             hhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       319 ~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      .+..|=++.++..||.||...|+...||.++..|-+|..++.+++|.++.+++..|+.+.++...+.+|+++|+++...-
T Consensus       182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~  261 (504)
T KOG0624|consen  182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP  261 (504)
T ss_pred             HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             HHHHHHHHHh
Q psy6102         399 EIAFVRKQMR  408 (426)
Q Consensus       399 ~l~~i~~~l~  408 (426)
                      ....+.+..+
T Consensus       262 ~YKklkKv~K  271 (504)
T KOG0624|consen  262 FYKKLKKVVK  271 (504)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.03  E-value=8.2e-09  Score=104.23  Aligned_cols=123  Identities=14%  Similarity=0.135  Sum_probs=99.3

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..+++.+++++|+..|.++++.                .|....++..+|.++.+.|++++|++.+++++..
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  243 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAA----------------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ  243 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhH----------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            345667888888889999999999998887                7777788888888888888888888888888888


Q ss_pred             CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         356 EPNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       356 dp~~-~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|.+ ..++..++.+|..+|++++|+..+++++++.|+...+ ..+..++...++.+++.+
T Consensus       244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~  303 (389)
T PRK11788        244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQA  303 (389)
T ss_pred             ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHH
Confidence            8876 4567788888888888888888888888888877554 677777777777777664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.02  E-value=1.1e-08  Score=117.89  Aligned_cols=121  Identities=21%  Similarity=0.244  Sum_probs=95.7

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      ....|..+++.|++++|+..|++++++                +|.+..++..+|.++...|++++|++.|+++++++|+
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQV----------------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            345678888888888888888888888                7788888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHH------------------------------------------HHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102         359 NVKALFRRGRA------------------------------------------QVSMNNFEQGLQDYEQALDLLPNDQQI  396 (426)
Q Consensus       359 ~~kal~~lg~a------------------------------------------~~~lg~~~~Al~~l~kAl~l~P~n~~a  396 (426)
                      +..++..++.+                                          +...|++++|++.|+++++++|+++.+
T Consensus       418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~  497 (1157)
T PRK11447        418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL  497 (1157)
T ss_pred             CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            77766544433                                          345688888888888888888888888


Q ss_pred             HHHHHHHHHHHhhHHHHHH
Q psy6102         397 LKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       397 ~~~l~~i~~~l~~~~~a~k  415 (426)
                      ...++.++...++.+++..
T Consensus       498 ~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        498 TYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            8888888888888777764

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.02  E-value=2.6e-09  Score=98.24  Aligned_cols=124  Identities=19%  Similarity=0.125  Sum_probs=88.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ....|..++..|.+.|+.+.|-+.|.+|+.+                +|.+.++++|.|.-++..|+|++|...+.+|+.
T Consensus        68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063          68 YYLAHLVRAHYYQKLGENDLADESYRKALSL----------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            4566777777777777777777777777777                777777777777777777777777777777774


Q ss_pred             hC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         355 ME--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       355 ld--p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .-  +..++.|-++|.|-+..|+++.|.++|+++|+++|+++.+...+...+...+++-++.
T Consensus       132 ~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         132 DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            32  3456677777777777777777777777777777777777777777666666665553

>KOG2076|consensus

Probab=99.00  E-value=9.8e-09  Score=109.32  Aligned_cols=142  Identities=11%  Similarity=0.178  Sum_probs=127.3

Q ss_pred             CcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH
Q psy6102         264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK  343 (426)
Q Consensus       264 ~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~  343 (426)
                      +.|.........+..+..+||.+|..|++++|...+.++|+.                +|.+..+|+.+|.+|.++|+.+
T Consensus       127 ~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------------dp~~~~ay~tL~~IyEqrGd~e  190 (895)
T KOG2076|consen  127 RRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------------DPRNPIAYYTLGEIYEQRGDIE  190 (895)
T ss_pred             CCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CccchhhHHHHHHHHHHcccHH
Confidence            344444444556889999999999999999999999999999                9999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       344 ~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      +|+...-.|-.++|.+.+.|.+++.....+|.+.+|+-+|.+|++.+|.+.........++..+|+...+.. .|.++|
T Consensus       191 K~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~  268 (895)
T KOG2076|consen  191 KALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLL  268 (895)
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999888764 555554

>KOG1173|consensus

Probab=99.00  E-value=4.3e-09  Score=107.16  Aligned_cols=123  Identities=18%  Similarity=0.301  Sum_probs=108.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+.++|.++|..+.|.+|+.+|+.++..++....         -.+.....+.|+|.++.+++.+++||.+++++|.
T Consensus       413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~---------e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN---------EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc---------cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4566899999999999999999999999966433221         1235677899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      +.|.++.++-.+|.+|..+|+++.|+++|.+||.+.|+|..+...|+.+...
T Consensus       484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999888888876655

>PLN02789 farnesyltranstransferase

Probab=99.00  E-value=9.5e-09  Score=101.66  Aligned_cols=121  Identities=10%  Similarity=0.063  Sum_probs=109.0

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHH
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNVKAL  363 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~ldp~~~kal  363 (426)
                      .+...+.+++|+..+.++|++                +|.+..+|..++.++..++ .+++|+..++++++.+|++..+|
T Consensus        46 ~l~~~e~serAL~lt~~aI~l----------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW  109 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRL----------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW  109 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence            356677899999999999999                9999999999999999999 68999999999999999999999


Q ss_pred             HHHHHHHHHcCCh--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         364 FRRGRAQVSMNNF--EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       364 ~~lg~a~~~lg~~--~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      +.++.++..+++.  ++++.+++++++++|+|..++...+.+...+++++++-. .+.+++
T Consensus       110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~-~~~~~I  169 (320)
T PLN02789        110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE-YCHQLL  169 (320)
T ss_pred             HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH-HHHHHH
Confidence            9999999999874  789999999999999999999999999999998876643 444443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.99  E-value=7e-09  Score=114.06  Aligned_cols=126  Identities=27%  Similarity=0.400  Sum_probs=108.5

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+...|..++..|++++|+..|.++++.                +|.+..++..+|.+++..|++++|+..+++++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  186 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAI----------------DPRSLYAKLGLAQLALAENRFDEARALIDEVL  186 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            35677889999999999999999999999988                77888888888888888888888888888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.+|.+..+++.+|.++...|++++|+..|++++.++|.+..++..+..++...++.+++..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~  248 (899)
T TIGR02917       187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK  248 (899)
T ss_pred             HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888888888888888888888888888888888888888888887777776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.99  E-value=7.4e-09  Score=114.28  Aligned_cols=123  Identities=15%  Similarity=0.112  Sum_probs=114.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..+...|++.+|+..|++++++                +|.+..++..+|.++...|++++|+..++++++
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~  111 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSL----------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVS  111 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4566889999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .+|+++. ++.+|.++...|++++|+..|+++++++|++..+...++.++...+..+++.
T Consensus       112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049        112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence            9999999 9999999999999999999999999999999999999998887766666544

>KOG1125|consensus

Probab=98.99  E-value=2.7e-09  Score=108.95  Aligned_cols=151  Identities=12%  Similarity=0.092  Sum_probs=129.6

Q ss_pred             hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc--------------------------------------
Q psy6102         271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--------------------------------------  312 (426)
Q Consensus       271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~--------------------------------------  312 (426)
                      +.++.+++|..+|.+....++=..||..+.+|+++-+.....                                      
T Consensus       314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~  393 (579)
T KOG1125|consen  314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAG  393 (579)
T ss_pred             hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccC
Confidence            344578999999999999999999999999999852111110                                      


Q ss_pred             ---------------------chhhhhhhcCc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102         313 ---------------------QSKTQQKHFRS--YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  369 (426)
Q Consensus       313 ---------------------~~~~~~~~~~p--~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a  369 (426)
                                           ...-++....|  .++++...||..|.-.++|++|+.+|+.||..+|++...|.++|.+
T Consensus       394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt  473 (579)
T KOG1125|consen  394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT  473 (579)
T ss_pred             ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence                                 00122223345  7889999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         370 QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       370 ~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      +..-.+.++|+..|++|++|.|....++.+++.....+|.+++|.++.+..+
T Consensus       474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.99  E-value=1.8e-08  Score=101.83  Aligned_cols=95  Identities=14%  Similarity=0.159  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAFVR  404 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n-~~a~~~l~~i~  404 (426)
                      ..++.++|.++.+.+++++|+..++++++++|++..+++.+|.++...|++++|++.|++++..+|.+ ..++..+..++
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            34677888888889999999999999998889888899999999999999999999999998888876 45677788888


Q ss_pred             HHHhhHHHHHHHHHHhh
Q psy6102         405 KQMRHHLNLEKMTYARM  421 (426)
Q Consensus       405 ~~l~~~~~a~k~~~~k~  421 (426)
                      ...++.+++.. .++++
T Consensus       260 ~~~g~~~~A~~-~l~~~  275 (389)
T PRK11788        260 QALGDEAEGLE-FLRRA  275 (389)
T ss_pred             HHcCCHHHHHH-HHHHH
Confidence            88888887765 44444

>KOG0553|consensus

Probab=98.96  E-value=4.2e-09  Score=100.32  Aligned_cols=96  Identities=18%  Similarity=0.305  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      ++-+-+-|.-+++.++|.+|+..|++||+++|.++-.|-+||.+|..+|.|+.|+++++.|+.+||....++..|+.++.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44566788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHhhh
Q psy6102         406 QMRHHLNLEKMTYARMF  422 (426)
Q Consensus       406 ~l~~~~~a~k~~~~k~f  422 (426)
                      .+++++++... |+|-+
T Consensus       161 ~~gk~~~A~~a-ykKaL  176 (304)
T KOG0553|consen  161 ALGKYEEAIEA-YKKAL  176 (304)
T ss_pred             ccCcHHHHHHH-HHhhh
Confidence            99999999886 77754

>KOG0550|consensus

Probab=98.96  E-value=5.4e-09  Score=102.99  Aligned_cols=142  Identities=12%  Similarity=0.110  Sum_probs=124.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+.+++-+|..++-..+.+.|+.+|+++|.+-|....    ....-..|.-...+..+|.-.++.|.|..|.++|..||.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~----sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK----SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhh----HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            6788999999999999999999999999998543321    122223566778899999999999999999999999999


Q ss_pred             hCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102         355 MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       355 ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      +||++    ++.|.++|.++..+|+..+|+.+++.|+.|+|....++...+.|+..+++.+++.+..-+.
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a  347 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA  347 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99976    7789999999999999999999999999999999999999999999999999988754443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.93  E-value=1.3e-08  Score=117.15  Aligned_cols=119  Identities=19%  Similarity=0.197  Sum_probs=94.5

Q ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q psy6102         281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  360 (426)
Q Consensus       281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~  360 (426)
                      .+|..++..|++++|+..|+++++.                +|.+..++..+|.+++++|++++|+..++++++++|++.
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~  337 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRA----------------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS  337 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            4588899999999999999999998                788888888888888888888888888888888887654


Q ss_pred             H--------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         361 K--------------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       361 k--------------al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .              .+..+|.++...|++++|+..|+++++++|++..++..++.++...++.+++.+
T Consensus       338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~  406 (1157)
T PRK11447        338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER  406 (1157)
T ss_pred             chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            2              123456677777788888888888888888777777777777777777777664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.92  E-value=2.5e-08  Score=95.99  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=98.7

Q ss_pred             HHHHHhccchh-hhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEY-FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       276 a~~~~~~G~~~-f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ...++..+..+ ++.++|++|+..|++.+..                .|..   +.+++.+|.+|+..|++++|+..|.+
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~----------------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~  205 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKK----------------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS  205 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45667777776 6679999999999999998                5554   68999999999999999999999999


Q ss_pred             HHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         352 ILLMEPN---NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       352 AL~ldp~---~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      +++..|+   .+++++.+|.++..+|++++|+..|+++++..|++..+......+
T Consensus       206 vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        206 VVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            9999887   488999999999999999999999999999999998776655544

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=3.3e-08  Score=99.61  Aligned_cols=135  Identities=11%  Similarity=0.041  Sum_probs=123.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ....+|..+..++..++++.|...+...+..                .|.|+.++..++.++++.++..+|++.+++++.
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~  368 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA----------------QPDNPYYLELAGDILLEANKAKEAIERLKKALA  368 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            4456777888888888888888888887777                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCC
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG  425 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~~  425 (426)
                      ++|+..-..+++|.+|+..|++.+|+..++..+.-+|+|+..|..|++.+..+++..++....-+.+|-++
T Consensus       369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G  439 (484)
T COG4783         369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG  439 (484)
T ss_pred             cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999988877766666554

>KOG4555|consensus

Probab=98.89  E-value=2.9e-08  Score=83.69  Aligned_cols=103  Identities=16%  Similarity=0.112  Sum_probs=94.2

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ++....+-..|..+-..|+.+.|++.|.+||.+                -|..+++|.|+|.++.-.|+.++|+.++++|
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l----------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~A  103 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCL----------------APERASAYNNRAQALRLQGDDEEALDDLNKA  103 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----------------cccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence            456677888899999999999999999999999                8999999999999999999999999999999


Q ss_pred             HHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         353 LLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       353 L~ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                      +++....    -.++..+|.+|..+|+-+.|..+|+.|-++-.
T Consensus       104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            9997655    34799999999999999999999999988854

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.89  E-value=3.9e-08  Score=106.41  Aligned_cols=104  Identities=7%  Similarity=-0.051  Sum_probs=99.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+.+....+..+++.+.+++|+..+.++++.                +|++..+++.+|.++.++|+|++|+..|++++.
T Consensus       119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSG----------------GSSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            6778899999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      .+|++.+++..+|.++..+|+.++|...|++|+.....-.
T Consensus       183 ~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        183 QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            9999999999999999999999999999999999865443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.88  E-value=1e-08  Score=78.37  Aligned_cols=71  Identities=24%  Similarity=0.490  Sum_probs=66.3

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       333 A~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      ..+|++.++|++|++++++++.++|+++.+|+.+|.++..+|++++|+++|++++++.|++..+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            56889999999999999999999999999999999999999999999999999999999999887766543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.86  E-value=5.8e-08  Score=74.91  Aligned_cols=89  Identities=24%  Similarity=0.452  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      +++++|.++...|++++|+..+++++++.|.+..+++.+|.++...+++++|++.|++++.+.|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHH
Q psy6102         408 RHHLNLEKM  416 (426)
Q Consensus       408 ~~~~~a~k~  416 (426)
                      ++.+++...
T Consensus        82 ~~~~~a~~~   90 (100)
T cd00189          82 GKYEEALEA   90 (100)
T ss_pred             HhHHHHHHH
Confidence            998877653

>KOG4162|consensus

Probab=98.86  E-value=1.3e-08  Score=106.90  Aligned_cols=105  Identities=16%  Similarity=0.185  Sum_probs=90.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH--HHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN--LCDDI  352 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~--~~~~A  352 (426)
                      .+..|+..|..+..+|++.+|...|..|+.+                +|+.+.+...+|.|+++.|+..-|..  .+..+
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l----------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~da  746 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALAL----------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDA  746 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc----------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence            5667888888888888888888888888888                88888888888888888888877777  88888


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      +++||.+.++||.+|.++..+|+.++|.++|+.|+++++.+|.
T Consensus       747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            8888888888888888888888888888888888888887763

>KOG2003|consensus

Probab=98.86  E-value=1.6e-08  Score=100.44  Aligned_cols=128  Identities=22%  Similarity=0.239  Sum_probs=118.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+.++.+.||..|..|++++|.+.|.+||.-                +.....+++|+|..+-.+|+.++|++++-+.-.
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~n----------------dasc~ealfniglt~e~~~~ldeald~f~klh~  552 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNN----------------DASCTEALFNIGLTAEALGNLDEALDCFLKLHA  552 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcC----------------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence            4567889999999999999999999999987                788899999999999999999999999988777


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY  418 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~  418 (426)
                      +--+++++++.++.+|..+.+..+|++.|-++..+-|.++.++..|+.++.+.++..++..--|
T Consensus       553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y  616 (840)
T KOG2003|consen  553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY  616 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence            7778999999999999999999999999999999999999999999999999998888765433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.85  E-value=7e-09  Score=77.61  Aligned_cols=65  Identities=12%  Similarity=0.238  Sum_probs=60.2

Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      +.+|..+++.|+|++|+..|+++++.                .|.+..+++.+|.|+.++|++++|+..++++++++|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQ----------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCC----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            35788999999999999999999998                89999999999999999999999999999999999987


Q ss_pred             H
Q psy6102         360 V  360 (426)
Q Consensus       360 ~  360 (426)
                      +
T Consensus        65 p   65 (65)
T PF13432_consen   65 P   65 (65)
T ss_dssp             H
T ss_pred             C
Confidence            5

>KOG1128|consensus

Probab=98.81  E-value=2.3e-08  Score=104.62  Aligned_cols=131  Identities=13%  Similarity=0.223  Sum_probs=121.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+.+.+..|+..+.+++|.+|.++++.++++                +|.....|+++|.|.+++++++.|.++|...+.
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt  547 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEI----------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT  547 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhc----------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence            4556778888889999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      ++|++.++|.+++.+|..+++-.+|...++.|++.+-++..++.+.-.+...++..+++.+ +|.++.
T Consensus       548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~-A~~rll  614 (777)
T KOG1128|consen  548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK-AYHRLL  614 (777)
T ss_pred             cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888866 555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.80  E-value=6.4e-08  Score=97.43  Aligned_cols=89  Identities=17%  Similarity=0.255  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.++++|+.++|++..++..++.++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHH
Q psy6102         409 HHLNLEKMT  417 (426)
Q Consensus       409 ~~~~a~k~~  417 (426)
                      ++.++....
T Consensus        85 ~~~eA~~~~   93 (356)
T PLN03088         85 EYQTAKAAL   93 (356)
T ss_pred             CHHHHHHHH
Confidence            999887643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.79  E-value=4.2e-08  Score=95.16  Aligned_cols=128  Identities=13%  Similarity=0.176  Sum_probs=101.0

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...+......+...++++++...+.++.....              .+.++.+|..+|.++.+.|++++|+.++++||++
T Consensus       110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  175 (280)
T PF13429_consen  110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLALAEIYEQLGDPDKALRDYRKALEL  175 (280)
T ss_dssp             --------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            34455666678888999999999998775410              3678899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      +|++..++..++.++...|+++++.+.++......|.++..+..++.++..+++.+++....
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~  237 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL  237 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence            99999999999999999999999999999999988999999999999999999999887533

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.79  E-value=1.9e-08  Score=75.79  Aligned_cols=68  Identities=21%  Similarity=0.301  Sum_probs=62.8

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      +++.|+|++|++.+++++..+|++.++++.+|.||...|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            36789999999999999999999999999999999999999999999999999999998888777654

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.79  E-value=8.7e-08  Score=89.80  Aligned_cols=128  Identities=14%  Similarity=0.174  Sum_probs=114.1

Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      ....+.++..|+-+.+..+..+++..                .|.+..+..-+|...++.|+|.+|+..+.++..++|++
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~----------------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d  133 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA----------------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD  133 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc----------------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence            55666666677777777777776665                78888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      .++|.-+|.+|..+|++++|...|.+|+++.|.++.+..+++..+..-++.+.+++.+...+.+
T Consensus       134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         134 WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999877765543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.78  E-value=1.1e-07  Score=85.28  Aligned_cols=113  Identities=15%  Similarity=0.094  Sum_probs=93.4

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--  359 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~--  359 (426)
                      ..+.+|-..+|..+...+...++...              ......+|+++|.++..++++++|+..+.+++.+.|+.  
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~   70 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTS--------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD   70 (168)
T ss_pred             cccccccccccccchhhhhHhccCCc--------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence            34566667777777777755544310              23457789999999999999999999999999998763  


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         360 -VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       360 -~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                       +.+|+++|.++..+|++++|+.+|++|+.++|.+...+..++.++..++
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence             4599999999999999999999999999999999999999988888333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=7e-08  Score=92.44  Aligned_cols=116  Identities=23%  Similarity=0.276  Sum_probs=104.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~  351 (426)
                      .++-|..+|..|+..+++..|...|.+|+++                .|.++.++..+|.+++...   .-.++...+++
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL----------------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRL----------------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            6788999999999999999999999999999                9999999999999998764   57789999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      +|++||.+..+++.+|..++..|+|.+|+..|++.+++.|.+..-...++.....
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999876555555444433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.77  E-value=3.3e-07  Score=87.33  Aligned_cols=127  Identities=13%  Similarity=0.204  Sum_probs=102.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++..|..++..|+|++|+..|++++...+.             .+.-..+.+.+|.+++++++|.+|+..+++.++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~   97 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR   97 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            5677899999999999999999999999998321             233344569999999999999999999999999


Q ss_pred             hCCCC---HHHHHHHHHHHHHcC---------------C---hHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhH
Q psy6102         355 MEPNN---VKALFRRGRAQVSMN---------------N---FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHH  410 (426)
Q Consensus       355 ldp~~---~kal~~lg~a~~~lg---------------~---~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~  410 (426)
                      +.|++   ..++|.+|.++..++               |   ..+|+..|++.++..|+..   ++...+..+...+.++
T Consensus        98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866         98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            99877   668999999975554               1   2568899999999999985   5666666666666655


Q ss_pred             HHHH
Q psy6102         411 LNLE  414 (426)
Q Consensus       411 ~~a~  414 (426)
                      +-..
T Consensus       178 e~~i  181 (243)
T PRK10866        178 ELSV  181 (243)
T ss_pred             HHHH
Confidence            5433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.76  E-value=1.1e-07  Score=84.81  Aligned_cols=109  Identities=24%  Similarity=0.343  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHH
Q psy6102         292 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILLMEPNNVK  361 (426)
Q Consensus       292 y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~----------~~~Ai~~~~~AL~ldp~~~k  361 (426)
                      |+.|.+.|...+..                +|.++..+++=|.+++.+.+          +++|+.-+++||.++|+..+
T Consensus         7 FE~ark~aea~y~~----------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd   70 (186)
T PF06552_consen    7 FEHARKKAEAAYAK----------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD   70 (186)
T ss_dssp             HHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHHh----------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence            66788888887777                99999999999999988744          57788999999999999999


Q ss_pred             HHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         362 ALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       362 al~~lg~a~~~lg~-----------~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      |++.+|.+|..++.           |++|..+|++|...+|+|...+..|....+.=.-+.+.+|+
T Consensus        71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~  136 (186)
T PF06552_consen   71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999988765           78899999999999999999999988887655555554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.75  E-value=1.2e-07  Score=81.81  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=99.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++..|...++.|+|.+|++.|+......+.             .+....+.+.++.+|++.++|.+|+..+++-|+
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4678999999999999999999999988876443             566678999999999999999999999999999


Q ss_pred             hCCCCH---HHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         355 MEPNNV---KALFRRGRAQVSMNN---------------FEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       355 ldp~~~---kal~~lg~a~~~lg~---------------~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      |+|.++   -|+|.+|.+++.+..               ...|+..|++.++..|++.-+....
T Consensus        76 LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~  139 (142)
T PF13512_consen   76 LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR  139 (142)
T ss_pred             hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            999885   489999999999987               8899999999999999998665443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.75  E-value=3.4e-08  Score=99.73  Aligned_cols=71  Identities=13%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             hhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA---LFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       319 ~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka---l~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      ...+|.++.+++|+|.+|+++|+|++|+..|++||+++|++.++   ||++|.||..+|++++|+++|++|+++
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34589999999999999999999999999999999999999965   999999999999999999999999998

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.74  E-value=3.2e-07  Score=85.05  Aligned_cols=126  Identities=18%  Similarity=0.264  Sum_probs=100.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++..|..+++.|+|.+|+..|++.+...+.             .+.-..+.+.+|.++++.++|.+|+..+++.++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999988554             567788999999999999999999999999999


Q ss_pred             hCCCC---HHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhHHHH
Q psy6102         355 MEPNN---VKALFRRGRAQVSMN-----------NFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       355 ldp~~---~kal~~lg~a~~~lg-----------~~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~~~a  413 (426)
                      ..|++   ..++|.+|.+++.+.           ...+|+..|+..+...|+++   .+...+..+...+.+++-.
T Consensus        71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~  146 (203)
T PF13525_consen   71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY  146 (203)
T ss_dssp             H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987   569999999976653           34589999999999999985   5556666666655555433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.71  E-value=3.3e-07  Score=76.00  Aligned_cols=90  Identities=16%  Similarity=0.241  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKE  399 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~  399 (426)
                      +..++.+|..+++.|++++|+..|.+++...|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578999999999999999999999999999887   6899999999999999999999999999999986   678999


Q ss_pred             HHHHHHHHhhHHHHHH
Q psy6102         400 IAFVRKQMRHHLNLEK  415 (426)
Q Consensus       400 l~~i~~~l~~~~~a~k  415 (426)
                      ++.++..+++..++.+
T Consensus        82 ~~~~~~~~~~~~~A~~   97 (119)
T TIGR02795        82 LGMSLQELGDKEKAKA   97 (119)
T ss_pred             HHHHHHHhCChHHHHH
Confidence            9999999999888775

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.71  E-value=3e-07  Score=101.60  Aligned_cols=114  Identities=14%  Similarity=0.151  Sum_probs=107.5

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  364 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~  364 (426)
                      ++.-.|++++|+..|.+++..                +|....++.++|.++...|++++|+..++++|+++|.++.+++
T Consensus        24 ia~~~g~~~~A~~~~~~~~~~----------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   87 (765)
T PRK10049         24 IALWAGQDAEVITVYNRYRVH----------------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR   87 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            445678899999999999987                8899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .+|.++...|++++|+..++++++.+|++.. +..++.++...++.+++..
T Consensus        88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~  137 (765)
T PRK10049         88 GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR  137 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999999999 9999999999999988865

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.70  E-value=2.3e-07  Score=102.17  Aligned_cols=146  Identities=10%  Similarity=0.010  Sum_probs=89.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------ch-------hhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~-------~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      .+...+..+...+++|+|..|+..|.++++..+.....           ..       .+....-.|.....+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            45578889999999999999999999999874443200           00       1111111223333333335577


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ..+|+|++|++.|+++++++|+++.+++.++.++...++.++|++.++++...+|.+... ..+..+...+++..+ .-.
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~  190 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQ  190 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHH
Confidence            777777777777777777777777777777677777777777777777777777765554 334444433333333 333


Q ss_pred             HHHhhh
Q psy6102         417 TYARMF  422 (426)
Q Consensus       417 ~~~k~f  422 (426)
                      .+++++
T Consensus       191 ~~ekll  196 (822)
T PRK14574        191 ASSEAV  196 (822)
T ss_pred             HHHHHH
Confidence            444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.68  E-value=2.1e-07  Score=83.75  Aligned_cols=90  Identities=19%  Similarity=0.248  Sum_probs=82.3

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      .+....+++++|.++...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..|++++.++|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            56778899999999999999999999999999988764   579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHH
Q psy6102         399 EIAFVRKQMRHHL  411 (426)
Q Consensus       399 ~l~~i~~~l~~~~  411 (426)
                      .++.++..+++..
T Consensus       111 ~lg~~~~~~g~~~  123 (172)
T PRK02603        111 NIAVIYHKRGEKA  123 (172)
T ss_pred             HHHHHHHHcCChH
Confidence            9999998877643

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.66  E-value=8.1e-08  Score=72.30  Aligned_cols=68  Identities=22%  Similarity=0.208  Sum_probs=62.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  365 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~  365 (426)
                      +++.|+|++|+..|++++..                .|.+..++..+|.|+++.|++++|...+++++..+|+++.++.-
T Consensus         1 ll~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            46789999999999999999                99999999999999999999999999999999999999888877


Q ss_pred             HHHH
Q psy6102         366 RGRA  369 (426)
Q Consensus       366 lg~a  369 (426)
                      ++.+
T Consensus        65 ~a~i   68 (68)
T PF14559_consen   65 LAQI   68 (68)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7653

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.65  E-value=1.2e-07  Score=72.32  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102         283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  362 (426)
Q Consensus       283 G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka  362 (426)
                      ...|++.++|++|+.++++++.+                +|.++.+|..+|.|+.++|++.+|+++++++++++|++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL----------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh----------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            46789999999999999999999                99999999999999999999999999999999999999988


Q ss_pred             HHHHHH
Q psy6102         363 LFRRGR  368 (426)
Q Consensus       363 l~~lg~  368 (426)
                      ...+++
T Consensus        66 ~~~~a~   71 (73)
T PF13371_consen   66 RALRAM   71 (73)
T ss_pred             HHHHHh
Confidence            777664

>KOG1308|consensus

Probab=98.63  E-value=1.9e-08  Score=97.30  Aligned_cols=105  Identities=24%  Similarity=0.256  Sum_probs=97.5

Q ss_pred             hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      +....+...+-.+..++..|.+++||+.|..||.+                +|....+|..+|.++++++.+..|+.+|.
T Consensus       109 e~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------------np~~a~l~~kr~sv~lkl~kp~~airD~d  172 (377)
T KOG1308|consen  109 EMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL----------------NPPLAILYAKRASVFLKLKKPNAAIRDCD  172 (377)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhhccccccccc----------------CCchhhhcccccceeeeccCCchhhhhhh
Confidence            33445667777888888999999999999999999                99999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                      .|+.++|+..+.|-.+|.+...+|++++|..++..|++++-
T Consensus       173 ~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  173 FAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             hhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999874

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.63  E-value=4.4e-07  Score=86.02  Aligned_cols=115  Identities=12%  Similarity=0.183  Sum_probs=102.8

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+|+.+..+++.|+|..|...|..-|+-.|.             .+..+.+++.||.+++.+|+|++|...|..+.+-
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~  207 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN-------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD  207 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            344899999999999999999999999987443             5677889999999999999999999999999998


Q ss_pred             CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         356 EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       356 dp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      .|++   +++++.+|.|+..+|+.++|...|+++++-.|+...+......+
T Consensus       208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            8766   67899999999999999999999999999999998877665444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.62  E-value=3.7e-07  Score=100.10  Aligned_cols=121  Identities=13%  Similarity=0.104  Sum_probs=108.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ...++..+...+...+++++|+.....+++.                .|....+|+.+|.++++.+++.+|...  .++.
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~   91 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE----------------HKKSISALYISGILSLSRRPLNDSNLL--NLID   91 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------CCcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence            6677888889999999999999999999998                999999999999999999998888776  6776


Q ss_pred             hCCCCH-------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         355 MEPNNV-------------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       355 ldp~~~-------------------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      +-+.+.                   .|++.+|.||-.+|++++|.+.|+++++++|+|+.+..+++..+... +.++|.
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~  169 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI  169 (906)
T ss_pred             hcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence            666665                   89999999999999999999999999999999999999999999888 666554

>KOG2002|consensus

Probab=98.62  E-value=3.2e-07  Score=98.69  Aligned_cols=121  Identities=13%  Similarity=0.203  Sum_probs=110.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+.-+++.+|..|+|..+...+..|+....             ..+..+..++++|.+|..+|+|++|..+|.++++
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k  335 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE-------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK  335 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            566788899999999999999999999998621             1566778899999999999999999999999999


Q ss_pred             hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         355 MEPNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       355 ldp~~-~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      .+|++ .-+++.+|+.+...|+++.|+.+|+++++..|++.+....|+.++....
T Consensus       336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            99998 8999999999999999999999999999999999999999999998874

>PRK11906 transcriptional regulator; Provisional

Probab=98.62  E-value=7.6e-07  Score=90.21  Aligned_cols=130  Identities=12%  Similarity=-0.004  Sum_probs=111.5

Q ss_pred             HHHhccchhhhh---hhHHHHHHHHHHHH---HHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc---------cCH
Q psy6102         278 TIKNSGNEYFKL---NRMHDAQRKYKKAV---RYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---------KAY  342 (426)
Q Consensus       278 ~~~~~G~~~f~~---g~y~~Ai~~y~kAl---~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l---------g~~  342 (426)
                      .++.+|...+.+   ...+.|+.+|.+|+   ++                +|.++.+|..+|.|++.+         .+-
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l----------------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~  320 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI----------------QTLKTECYCLLAECHMSLALHGKSELELAA  320 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC----------------CcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            456666666443   35678888899999   66                999999999999999875         245


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       343 ~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      .+|++...+|++++|.++.|++.+|.++...++++.|...|++|+.++|+.+.++...+.+....|+.+++....-+.+-
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            67888999999999999999999999999999999999999999999999999999999999999999988876665444


Q ss_pred             c
Q psy6102         423 Q  423 (426)
Q Consensus       423 ~  423 (426)
                      -
T Consensus       401 L  401 (458)
T PRK11906        401 L  401 (458)
T ss_pred             c
Confidence            3

>KOG1129|consensus

Probab=98.56  E-value=2.4e-07  Score=89.17  Aligned_cols=139  Identities=11%  Similarity=0.110  Sum_probs=107.3

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQL  337 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~~  337 (426)
                      +..+...+.++-..+++++|+++|+.++++.+..-++                  ........+.-.++.+++|+|.|.+
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            3344555555666666666666666666543222221                  0012223347788999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         338 KFKAYKRAINLCDDILLMEP---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       338 ~lg~~~~Ai~~~~~AL~ldp---~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .-++++-++..+.+|+..-.   .-+++||++|.+....||+..|..+|+-||..||++.+++.+|+-+..+.|+..++.
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR  449 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence            99999999999999997643   448899999999999999999999999999999999999999999999988887764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.56  E-value=7.4e-07  Score=81.48  Aligned_cols=111  Identities=16%  Similarity=0.132  Sum_probs=104.5

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..++++|+.|=..|-+..|...|++++.+                .|..+.+++.+|..+..-|+|+.|.+.++.++
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai----------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~  126 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL  126 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence            36788999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      ++||.+--++.+||.+++--|+|.-|.+++.+-.+-||+|+--..++
T Consensus       127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL  173 (297)
T COG4785         127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL  173 (297)
T ss_pred             ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence            99999999999999999999999999999999999999998543333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2e-06  Score=82.50  Aligned_cols=102  Identities=13%  Similarity=0.064  Sum_probs=94.1

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l---g~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      +|.++.-|..+|.+|+.+++++.|...|.+|+++.|+|++.+..+|.+++..   ..-.+|...+++|+.+||.|..++.
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            9999999999999999999999999999999999999999999999998776   3457789999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         399 EIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       399 ~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      .|+......+++.++.- .|++|.+.
T Consensus       232 lLA~~afe~g~~~~A~~-~Wq~lL~~  256 (287)
T COG4235         232 LLAFAAFEQGDYAEAAA-AWQMLLDL  256 (287)
T ss_pred             HHHHHHHHcccHHHHHH-HHHHHHhc
Confidence            99999999999998864 77777653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.54  E-value=2e-06  Score=90.58  Aligned_cols=120  Identities=11%  Similarity=0.067  Sum_probs=80.7

Q ss_pred             HHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHhhcccc-----------------h---------hhhhhh--cCc
Q psy6102         275 VIRTIKNSGNEYFKL---NRMHDAQRKYKKAVRYIKWYNQSQ-----------------S---------KTQQKH--FRS  323 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~---g~y~~Ai~~y~kAl~~~~~~~~~~-----------------~---------~~~~~~--~~p  323 (426)
                      .+..++.+|..++..   +++..|+.+|++|+++-|.+....                 .         ......  .++
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            566778888877654   458899999999999743322110                 0         011111  245


Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      ..+.++.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            5566677777777777777777777777777777 4667777777777777777777777777777777663

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.53  E-value=1.7e-07  Score=72.69  Aligned_cols=67  Identities=25%  Similarity=0.440  Sum_probs=59.1

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld-------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      |.-+.++.++|.+|..+|+|++|+.++++++++.       |.-+.+++++|.++..+|++++|++.+++|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4557899999999999999999999999999762       223778999999999999999999999999986

...

>KOG1173|consensus

Probab=98.53  E-value=1.1e-06  Score=89.97  Aligned_cols=105  Identities=16%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             hhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP-------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       318 ~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp-------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                      +..+.|.++-++..+|.+.+..+.|.+|+.+++.+|..-+       ...-.+.++|.++..++.+++|+.+|++||.+.
T Consensus       406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            3344899999999999999999999999999999994321       234568999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         391 PNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       391 P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      |.+..+...++.++..+++.+.|.-..++.+-
T Consensus       486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            99999999999999999999988866665543

>KOG3060|consensus

Probab=98.53  E-value=2.4e-06  Score=79.86  Aligned_cols=137  Identities=17%  Similarity=0.116  Sum_probs=85.0

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcc--------------c----chhhhhhhcCcchHHHHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ--------------S----QSKTQQKHFRSYYTAALLNMAAVQLK  338 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~--------------~----~~~~~~~~~~p~~~~~~~nlA~~~~~  338 (426)
                      +.....|..+-..|+|++|+++|...|+-.|....              .    ....+..+.-+.+.++|..+|.+|+.
T Consensus        87 RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen   87 RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS  166 (289)
T ss_pred             hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            44556677777889999999999988874110000              0    00122333346666677777777777


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       339 lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg---~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      +++|++|.-++++.+-++|.++..+-++|.+++-+|   ++.-|.++|.+|++++|.+..++..+-.+-..+-+...+
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~  244 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKA  244 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence            777777777777777777777666666666665554   344566667777777766666666666555555444333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.52  E-value=3.1e-07  Score=72.45  Aligned_cols=78  Identities=18%  Similarity=0.275  Sum_probs=70.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         339 FKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       339 lg~~~~Ai~~~~~AL~ldp~--~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .++|+.|+..++++++.+|.  +...++.+|.||+.+|+|++|+..+++ +..+|.+..+...++.++..+++++++.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999999999995  577889999999999999999999999 889999999999999999999999999875


Q ss_pred             H
Q psy6102         417 T  417 (426)
Q Consensus       417 ~  417 (426)
                      .
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            4

>KOG2076|consensus

Probab=98.51  E-value=2.8e-06  Score=90.96  Aligned_cols=120  Identities=13%  Similarity=0.143  Sum_probs=107.4

Q ss_pred             chhhccccHHHHHhhchhhCCcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc
Q psy6102         244 GCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS  323 (426)
Q Consensus       244 G~VieGldvl~~I~~l~~~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p  323 (426)
                      |+..+.+.++.++-+..+            .....|+.+|.+|-++|+.++|+..+..|-.+                +|
T Consensus       153 g~~eeA~~i~~EvIkqdp------------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----------------~p  204 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDP------------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----------------NP  204 (895)
T ss_pred             CCHHHHHHHHHHHHHhCc------------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----------------CC
Confidence            666666665555544322            25678999999999999999999999999888                99


Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                      .+...|..+|....++|.+++|+-+|.+||+++|.+.+.+++++.+|..+|++..|...|.+++.+.|
T Consensus       205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999

>KOG4162|consensus

Probab=98.50  E-value=1.5e-06  Score=91.75  Aligned_cols=123  Identities=10%  Similarity=0.027  Sum_probs=112.5

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      -..|...+..+...++-++|..+..+|-.+                .|.....|+.+|.++...|++.+|.+.|..|+.+
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~----------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKI----------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL  713 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhc----------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence            445666777777777788888888888777                8999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQ--DYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~--~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      ||+++.....+|.++...|+..-|..  .+..|++++|.|.++|..++.+.+..|+.+++.
T Consensus       714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa  774 (799)
T KOG4162|consen  714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA  774 (799)
T ss_pred             CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence            99999999999999999999988888  999999999999999999999999999998775

>KOG1840|consensus

Probab=98.49  E-value=1.7e-06  Score=90.11  Aligned_cols=134  Identities=19%  Similarity=0.206  Sum_probs=113.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+...|..|...++|.+|+..|++|+.+.....        -...|..+..+.|+|.+|.+.|++++|..+|++|+
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~--------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF--------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            3455566799999999999999999999999853221        12368888999999999999999999999999999


Q ss_pred             HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PND---QQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-----P~n---~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++-        |.-...+..++.++..++++++|+..|++++++.     ++|   +.+..+++.++..+|+++++..
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~  388 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE  388 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence            874        3346788999999999999999999999999863     333   5688999999999999999874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.49  E-value=1e-06  Score=77.08  Aligned_cols=99  Identities=15%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .......+|..++..|++++|+..|++++...+.             .+....+.+.+|.+++..|+|++|+..++. +.
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~  112 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPD-------------PELKPLARLRLARILLQQGQYDEALATLQQ-IP  112 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-cc
Confidence            3456677788888888888888888888775100             122345677788888888888888888755 33


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL  387 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl  387 (426)
                      -.+-.+.++..+|.+|..+|++++|+..|++||
T Consensus       113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            344556677778888888888888888888764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.48  E-value=4.1e-07  Score=70.47  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|+|++|+.+|++|+++......         -.+..+.++.++|.|+..+|++++|++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---------DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35778999999999999999999999999998433321         134568899999999999999999999999999


Q ss_pred             HhC
Q psy6102         354 LME  356 (426)
Q Consensus       354 ~ld  356 (426)
                      ++.
T Consensus        74 ~i~   76 (78)
T PF13424_consen   74 DIF   76 (78)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            863

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.47  E-value=2.6e-06  Score=82.08  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=84.9

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAF  402 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n-~~a~~~l~~  402 (426)
                      ..+.+|+.+|..++...+.+.|+..+.+|++-||+++.|-..+|.+....|+|..|++.|+.+++.+|+. +++...|..
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            4466899999999999999999999999999999999999999999999999999999999999999986 688999999


Q ss_pred             HHHHHhhHHHHHHH
Q psy6102         403 VRKQMRHHLNLEKM  416 (426)
Q Consensus       403 i~~~l~~~~~a~k~  416 (426)
                      |+..+++.++...-
T Consensus       258 ~Y~~lg~~~~~~~f  271 (389)
T COG2956         258 CYAQLGKPAEGLNF  271 (389)
T ss_pred             HHHHhCCHHHHHHH
Confidence            99999988876643

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.47  E-value=2e-06  Score=86.96  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=107.8

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +.+..+-..+..+++.++..+|++.+++++.+                +|....++.++|.++++.|++.+|+..++..+
T Consensus       338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~  401 (484)
T COG4783         338 DNPYYLELAGDILLEANKAKEAIERLKKALAL----------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYL  401 (484)
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence            45667778899999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      .-+|+++..|..+|++|..+|+..+|...+...+.+.-.-..+...+.....+.
T Consensus       402 ~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         402 FNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999888887777777777666654

>KOG2002|consensus

Probab=98.47  E-value=8.5e-07  Score=95.49  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=110.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch-HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .++.++.+|..+..+|+|++|-.+|.+++..                ++.+ .-.++.+|.+|++.|+++.|+.++.+++
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----------------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA----------------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------------CCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence            5677999999999999999999999999998                6666 8889999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         354 LMEPNNVKALFRRGRAQVSMN----NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg----~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +..|++.+.+.-+|.+|...+    ..+.|...+.++++..|.|.+++..++.++....
T Consensus       370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d  428 (1018)
T KOG2002|consen  370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD  428 (1018)
T ss_pred             HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC
Confidence            999999999999999999886    7789999999999999999999999999987643

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.46  E-value=6.8e-06  Score=71.77  Aligned_cols=130  Identities=12%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+...+......+..+++..+...+.+.+.-.+.             .+.-..+.+.+|.+++..|++++|+..++.++.
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~   76 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPS-------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALA   76 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3444555555566677787777777777665111             223377889999999999999999999999999


Q ss_pred             hCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         355 MEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       355 ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      ..|+.   ..+.+++|.+++.+|++++|+..++. +.-.+-.+.+...++.++...++.+++.. .|+
T Consensus        77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~-~y~  142 (145)
T PF09976_consen   77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA-AYQ  142 (145)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH-HHH
Confidence            87665   56899999999999999999999976 34455667899999999999999998865 443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.45  E-value=2.2e-06  Score=94.54  Aligned_cols=125  Identities=12%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...+...|..+...|+|++|+..|+++++.                +|.++.++..++.++...+++++|++.+++++.+
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~----------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~  165 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKK----------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER  165 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence            455666788899999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      +|.+... ..++.++..++++.+|++.|+++++++|++.++...+-.+....+-...+.+.+
T Consensus       166 dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~  226 (822)
T PRK14574        166 DPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA  226 (822)
T ss_pred             CcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            9996555 555666666888878999999999999999999999988888887776555433

>KOG1128|consensus

Probab=98.45  E-value=5e-07  Score=94.76  Aligned_cols=120  Identities=14%  Similarity=0.201  Sum_probs=101.4

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  361 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~k  361 (426)
                      ....|.-.||...--.+|++|+++.               +..+..+...+|...+..++|++|.++++..++++|-...
T Consensus       456 d~~lyc~LGDv~~d~s~yEkawEls---------------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~  520 (777)
T KOG1128|consen  456 DPRLYCLLGDVLHDPSLYEKAWELS---------------NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG  520 (777)
T ss_pred             cchhHHHhhhhccChHHHHHHHHHh---------------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh
Confidence            4445555555555666777777763               3344556677777778889999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       362 al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .||.+|.|...++++..|.++|..++.++|++.+++.++...+..+++..++-+.
T Consensus       521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.45  E-value=3.8e-06  Score=71.08  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQILKEI  400 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~---n~~a~~~l  400 (426)
                      .+.+++|.++-.+|+.++|+..|++++....+.   ..+++.+|.++..+|++++|+..+++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            478999999999999999999999999976444   679999999999999999999999999999898   88899999


Q ss_pred             HHHHHHHhhHHHHHHHHHHh
Q psy6102         401 AFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       401 ~~i~~~l~~~~~a~k~~~~k  420 (426)
                      ..++..+++.+++...++..
T Consensus        82 Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            99999999999988766553

>TIGR00540 hemY_coli hemY protein

Probab=98.43  E-value=7.2e-06  Score=84.14  Aligned_cols=126  Identities=12%  Similarity=0.077  Sum_probs=109.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +.+......|...+..|+|+.|.+...++.+.                .|.....+...|.++.++|+++.|.+++.++.
T Consensus        82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~  145 (409)
T TIGR00540        82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADH----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAA  145 (409)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            35677788999999999999999999998887                67777788888899999999999999999999


Q ss_pred             HhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~-kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +..|++. .+....+.++...|+++.|++.++..++..|+++.+...+..++...++.+++.+
T Consensus       146 ~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~  208 (409)
T TIGR00540       146 ELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD  208 (409)
T ss_pred             HhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            9888875 4666679999999999999999999999999999999999999998888876654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.42  E-value=2.2e-06  Score=72.56  Aligned_cols=99  Identities=19%  Similarity=0.150  Sum_probs=87.2

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+++.|..+-..|+.++|+..|.+|++.-..             .+....++..+|.++..+|++++|+..+++++.-.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~   68 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS-------------GADRRRALIQLASTLRNLGRYDEALALLEEALEEF   68 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            45788899999999999999999999985110             34557799999999999999999999999999998


Q ss_pred             CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102         357 PN---NVKALFRRGRAQVSMNNFEQGLQDYEQALD  388 (426)
Q Consensus       357 p~---~~kal~~lg~a~~~lg~~~~Al~~l~kAl~  388 (426)
                      |+   +..+...++.++..+|++++|+..+-.++.
T Consensus        69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88   888888899999999999999999887774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.41  E-value=2.7e-06  Score=86.21  Aligned_cols=72  Identities=18%  Similarity=0.113  Sum_probs=66.5

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHH---HHHHHHHHHHccCHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA---LLNMAAVQLKFKAYKRA  345 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~---~~nlA~~~~~lg~~~~A  345 (426)
                      .......+..+.++|..|++.|+|++|+..|++||++                +|.+..+   |+|+|.||..+|++++|
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----------------~Pd~aeA~~A~yNLAcaya~LGr~dEA  131 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL----------------NPNPDEAQAAYYNKACCHAYREEGKKA  131 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            3455668999999999999999999999999999999                8998855   99999999999999999


Q ss_pred             HHHHHHHHHhC
Q psy6102         346 INLCDDILLME  356 (426)
Q Consensus       346 i~~~~~AL~ld  356 (426)
                      ++++.+||++.
T Consensus       132 la~LrrALels  142 (453)
T PLN03098        132 ADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHhc
Confidence            99999999984

>TIGR00540 hemY_coli hemY protein

Probab=98.41  E-value=3.2e-06  Score=86.76  Aligned_cols=129  Identities=10%  Similarity=-0.017  Sum_probs=107.6

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHH--HHHHHHHHHHccCHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA--LLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~--~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      +....+...+..+...|++++|+..+.++++.                .|++...  ..-+....+..++...+++.+++
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~----------------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK----------------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----------------CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence            35677888999999999999999999999998                6666542  13333444556889999999999


Q ss_pred             HHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102         352 ILLMEPNNV--KALFRRGRAQVSMNNFEQGLQDYE--QALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       352 AL~ldp~~~--kal~~lg~a~~~lg~~~~Al~~l~--kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      +++.+|+++  ..+..+|.+++.+|++++|.++|+  ++++.+|++.... .++.++..+++.+++. ..|++
T Consensus       325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~-~~~~~  395 (409)
T TIGR00540       325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAA-AMRQD  395 (409)
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHH-HHHHH
Confidence            999999999  889999999999999999999999  6888999887755 9999999999988774 35554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1156|consensus

Probab=98.41  E-value=1.6e-06  Score=89.99  Aligned_cols=121  Identities=14%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..++..+...|..++|...+...++.|.-                .|...+.+...|..+..+|+-++|...+..++..|
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d   71 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKK----------------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND   71 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHh----------------CCccchhHHhccchhhcccchHHHHHHHHHHhccC
Confidence            45667777888899999999988888886                78889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      +...-.|..+|.++....+|++|+++|+.|+.++|+|.+++.-+..+..++++++-.
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence            999999999999999999999999999999999999999999999999998887643

>KOG1310|consensus

Probab=98.38  E-value=1.5e-06  Score=88.29  Aligned_cols=115  Identities=23%  Similarity=0.223  Sum_probs=103.8

Q ss_pred             chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc---cCHHHHH
Q psy6102         270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---KAYKRAI  346 (426)
Q Consensus       270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l---g~~~~Ai  346 (426)
                      .+....++.++..|+..|-...+..||..|.+++..                -|....+|.|+|.++++.   ++--.|+
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----------------~~~~~~~l~nraa~lmkRkW~~d~~~Al  431 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----------------VPDAIYLLENRAAALMKRKWRGDSYLAL  431 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----------------ccchhHHHHhHHHHHHhhhccccHHHHH
Confidence            455567888999999999999999999999999999                899999999999999986   5778899


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         347 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       347 ~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      .+|..||.++|...+|||+++.++..++++.+|+++...+....|.+.......
T Consensus       432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v  485 (758)
T KOG1310|consen  432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFV  485 (758)
T ss_pred             HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhh
Confidence            999999999999999999999999999999999999998888888776554443

>KOG1840|consensus

Probab=98.34  E-value=1.6e-05  Score=82.81  Aligned_cols=134  Identities=18%  Similarity=0.173  Sum_probs=114.8

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +.+..+.+.+..+..++++++|+.+|++++++.....        .+.++.-+..+.++|.+|+.+|+|.+|.+.+++||
T Consensus       323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~--------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai  394 (508)
T KOG1840|consen  323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP--------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI  394 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc--------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            4677789999999999999999999999999864222        12245678899999999999999999999999999


Q ss_pred             HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-------LPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l-------~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .+.        +.....+.++|..+..++++.+|...|..++.+       .|+-.....+|+.++..+++++.+..
T Consensus       395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~  471 (508)
T KOG1840|consen  395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE  471 (508)
T ss_pred             HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence            774        344778999999999999999999999999886       34556789999999999999998874

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.34  E-value=6.5e-06  Score=82.08  Aligned_cols=144  Identities=11%  Similarity=-0.021  Sum_probs=116.2

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc----------------c-hh----hhhhhcCcchHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS----------------Q-SK----TQQKHFRSYYTAALLNMAA  334 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~----------------~-~~----~~~~~~~p~~~~~~~nlA~  334 (426)
                      .+.....+..++..|++++|+..+.++++..|.....                . ..    .......|....++..+|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            3445667888999999999999999999865432211                0 01    1122356777788889999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHhhH
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ----ILKEIAFVRKQMRHH  410 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~----a~~~l~~i~~~l~~~  410 (426)
                      ++..+|++++|+..++++++++|++..++..+|.++...|++++|+..+++++...|.+..    .+..++.++...|+.
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999999999999999999999999999999999999999885432    455789999999999


Q ss_pred             HHHHHHHHHh
Q psy6102         411 LNLEKMTYAR  420 (426)
Q Consensus       411 ~~a~k~~~~k  420 (426)
                      +++.+ .|.+
T Consensus       203 ~~A~~-~~~~  211 (355)
T cd05804         203 EAALA-IYDT  211 (355)
T ss_pred             HHHHH-HHHH
Confidence            98876 4444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.2e-05  Score=77.53  Aligned_cols=164  Identities=11%  Similarity=0.178  Sum_probs=132.2

Q ss_pred             ccceechhhcccc-HHHHHhhchhhCCcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhh
Q psy6102         239 KNGIFGCVRQGFG-VAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ  317 (426)
Q Consensus       239 ~~~vFG~VieGld-vl~~I~~l~~~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~  317 (426)
                      .+...|.+.+... +-++|.--..--.+|.-.  ..+...++.++|..|...|-++.|...|...++.            
T Consensus        71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT--~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de------------  136 (389)
T COG2956          71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT--FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE------------  136 (389)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc------------
Confidence            6677888776553 333443322222333322  2346778999999999999999999999988875            


Q ss_pred             hhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102         318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       318 ~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~-----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~  392 (426)
                          ...-..++..+..+|....+|++||+...+..++.+..     +..|..+|+.+....+.+.|+..+.+|++-+|+
T Consensus       137 ----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~  212 (389)
T COG2956         137 ----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK  212 (389)
T ss_pred             ----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence                45556789999999999999999999999999999876     456778899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         393 DQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       393 n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      +..+-..++.+....|+++.+.+ .|++.
T Consensus       213 cvRAsi~lG~v~~~~g~y~~AV~-~~e~v  240 (389)
T COG2956         213 CVRASIILGRVELAKGDYQKAVE-ALERV  240 (389)
T ss_pred             ceehhhhhhHHHHhccchHHHHH-HHHHH
Confidence            99999999999999999998876 44444

>KOG3060|consensus

Probab=98.32  E-value=2.9e-05  Score=72.76  Aligned_cols=89  Identities=12%  Similarity=0.143  Sum_probs=79.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~  351 (426)
                      ..++|.+++..|+..++|++|+-+|.+.+-+                +|.++.+...+|.+++-+|   ++.-|.++|.+
T Consensus       153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~----------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~  216 (289)
T KOG3060|consen  153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLI----------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYER  216 (289)
T ss_pred             cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6789999999999999999999999999998                9999999999999999876   67789999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQG  379 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~A  379 (426)
                      +|+++|.+..++|.+-.|-..+-....+
T Consensus       217 alkl~~~~~ral~GI~lc~~~la~~sk~  244 (289)
T KOG3060|consen  217 ALKLNPKNLRALFGIYLCGSALAQISKA  244 (289)
T ss_pred             HHHhChHhHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999998876665444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.31  E-value=6.4e-06  Score=82.12  Aligned_cols=99  Identities=10%  Similarity=0.042  Sum_probs=89.5

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .+...|..+...|++++|+..+.+++++                .|.+..++..+|.++...|++++|+..+++++.+.|
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALEL----------------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            4456788999999999999999999999                999999999999999999999999999999999987


Q ss_pred             CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102         358 NNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       358 ~~~----kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~  392 (426)
                      ..+    ..|+.+|.++..+|++++|+..|++++...|.
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            443    35678999999999999999999999887774

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.29  E-value=1.1e-05  Score=77.69  Aligned_cols=97  Identities=9%  Similarity=0.125  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHH
Q psy6102         325 YTAALLNMAAVQ-LKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQIL  397 (426)
Q Consensus       325 ~~~~~~nlA~~~-~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~  397 (426)
                      ....++..|..+ ++.|+|++|+..|+..++..|++   +.++|.+|.+|+.+|++++|+..|++++...|++   +.++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            456778888876 56799999999999999999988   6899999999999999999999999999998885   6788


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         398 KEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       398 ~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      ..++.++..+++..++.+ .|+++.
T Consensus       221 ~klg~~~~~~g~~~~A~~-~~~~vi  244 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKA-VYQQVI  244 (263)
T ss_pred             HHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            888999988888777754 454443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.28  E-value=2.7e-05  Score=79.58  Aligned_cols=126  Identities=10%  Similarity=0.039  Sum_probs=95.0

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHH-HHHHHHccCHHHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM-AAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nl-A~~~~~lg~~~~Ai~~~~  350 (426)
                      ..+.+......|...+..|+|++|.+...++-+.                 ...+.+++.+ |.+..++|+++.|..++.
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~  142 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH-----------------AEQPVVNYLLAAEAAQQRGDEARANQHLE  142 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------------ccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3346677788888888889999888666655443                 2224444444 445588888888888888


Q ss_pred             HHHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         351 DILLMEPNNVKA-LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       351 ~AL~ldp~~~ka-l~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      ++.+.+|++..+ ....+..+...|++++|++.++++++.+|+++.+...+..++...++.+++.
T Consensus       143 ~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        143 RAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            888888887543 3455888888888888888888888888888888888888888888777665

>PRK15331 chaperone protein SicA; Provisional

Probab=98.25  E-value=1.5e-05  Score=70.43  Aligned_cols=100  Identities=13%  Similarity=0.033  Sum_probs=93.3

Q ss_pred             hhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         316 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       316 ~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      .+...+.+......+..|.-++..|++++|...+.-...+||.+++.|+.+|.|+..+++|++|+..|-.|..++++|+.
T Consensus        27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            34445577888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHHHH
Q psy6102         396 ILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       396 a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .....+.|+..+++...|..
T Consensus       107 p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331        107 PVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             ccchHHHHHHHhCCHHHHHH
Confidence            99999999999999988876

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.22  E-value=2.1e-05  Score=79.74  Aligned_cols=109  Identities=19%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102         289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  368 (426)
Q Consensus       289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~  368 (426)
                      .++|+.|+..+++..+.                +|.   +...+|.+++.+++..+|++.++++|+.+|.++..+...+.
T Consensus       182 t~~~~~ai~lle~L~~~----------------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~  242 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRER----------------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE  242 (395)
T ss_pred             cccHHHHHHHHHHHHhc----------------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45688888888887665                554   55668999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         369 AQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       369 a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .+...++++.|+...++|..+.|++...|..|..++..+++++.|--.
T Consensus       243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999998643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1174|consensus

Probab=98.21  E-value=2.1e-05  Score=78.16  Aligned_cols=140  Identities=15%  Similarity=0.159  Sum_probs=114.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch-----------hhh-------hhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-----------KTQ-------QKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~-----------~~~-------~~~~~p~~~~~~~nlA~~~  336 (426)
                      ....+-..|..+|..|++.+|+..|+++..+.++.-.+.+           .+.       ..........-|+--+...
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l  310 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL  310 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence            5667788999999999999999999999887544433322           000       0011112233344455666


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      +..++++.|+.+..++|+++|.+..+|...|.++..+++.++|+-.|+.|..+.|..-.....|-.++...++.+++.
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            788999999999999999999999999999999999999999999999999999999999999999999999998886

>KOG0543|consensus

Probab=98.21  E-value=7.3e-06  Score=81.45  Aligned_cols=100  Identities=19%  Similarity=0.223  Sum_probs=90.0

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...+.+++..+.+.++|.+|+...+++|.+                +|.++.+++.+|.+++.+++|+.|+.++++|+++
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLEL----------------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----------------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            345789999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCC
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQG-LQDYEQALDLLP  391 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~A-l~~l~kAl~l~P  391 (426)
                      +|+|-.+...+..|-....++.+. .+.|.+.+..-+
T Consensus       321 ~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  321 EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999998888777666554 778888887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.20  E-value=8.1e-05  Score=68.92  Aligned_cols=128  Identities=12%  Similarity=0.162  Sum_probs=101.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-----------HH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-----------YK  343 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~-----------~~  343 (426)
                      ...+.+.+|..+|+.++|.+|+..|++.++..|.             .|....+++.+|.+++.+..           ..
T Consensus        41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~  107 (203)
T PF13525_consen   41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-------------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTR  107 (203)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------CcchhhHHHHHHHHHHHhCccchhcccChHHHH
Confidence            5567889999999999999999999999998554             56677899999999877643           45


Q ss_pred             HHHHHHHHHHHhCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHH
Q psy6102         344 RAINLCDDILLMEPNN-----------------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFV  403 (426)
Q Consensus       344 ~Ai~~~~~AL~ldp~~-----------------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~---~a~~~l~~i  403 (426)
                      +|+..++..+..-|++                 .+--+..|.-|+..|.|..|+.-++.+++-.|+.+   +++..+...
T Consensus       108 ~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~  187 (203)
T PF13525_consen  108 KAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA  187 (203)
T ss_dssp             HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence            8999999999999987                 22356788999999999999999999999999885   567777777


Q ss_pred             HHHHhhHHHHHH
Q psy6102         404 RKQMRHHLNLEK  415 (426)
Q Consensus       404 ~~~l~~~~~a~k  415 (426)
                      +..++....++.
T Consensus       188 y~~l~~~~~a~~  199 (203)
T PF13525_consen  188 YYKLGLKQAADT  199 (203)
T ss_dssp             HHHTT-HHHHHH
T ss_pred             HHHhCChHHHHH
Confidence            778887775543

>KOG2003|consensus

Probab=98.19  E-value=3.7e-05  Score=77.06  Aligned_cols=148  Identities=14%  Similarity=0.050  Sum_probs=87.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------ch-------hhhhhhcCcchHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAV  335 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~-------~~~~~~~~p~~~~~~~nlA~~  335 (426)
                      .+.+++++.|..+-.+|+.++|+++|-+.-.++....+.           ++       ......+-|.++.++..+|..
T Consensus       522 sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl  601 (840)
T KOG2003|consen  522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL  601 (840)
T ss_pred             HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            478899999999999999999999998877663211100           00       011112234444444444444


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH-
Q psy6102         336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE-  414 (426)
Q Consensus       336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~-  414 (426)
                      |-+-|+-.+|.+++-...+.-|+|.+..-.+|.-|....-.++|+.+|++|--+.|.-..-+..++.|.++.+.++++- 
T Consensus       602 ydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d  681 (840)
T KOG2003|consen  602 YDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD  681 (840)
T ss_pred             hhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence            4444444444444444444445555555555555555555566677777776667766666666777777777777664 


Q ss_pred             --HHHHHhh
Q psy6102         415 --KMTYARM  421 (426)
Q Consensus       415 --k~~~~k~  421 (426)
                        +..++|+
T Consensus       682 ~yk~~hrkf  690 (840)
T KOG2003|consen  682 LYKDIHRKF  690 (840)
T ss_pred             HHHHHHHhC
Confidence              4444444

>KOG1129|consensus

Probab=98.18  E-value=5e-06  Score=80.26  Aligned_cols=118  Identities=17%  Similarity=0.171  Sum_probs=84.8

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      +.+.-++.+|.+..+...|+..|.+.++.                -|.++..++.+|.++..|+++++|++.|+.+++++
T Consensus       257 dTfllLskvY~ridQP~~AL~~~~~gld~----------------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~  320 (478)
T KOG1129|consen  257 DTFLLLSKVYQRIDQPERALLVIGEGLDS----------------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH  320 (478)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHhhhhhc----------------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence            34444455555555555555555555554                79999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      |.|.+++--+|.-|+.-++.+-|+.+|++.|++--.+++...+++.|-...++.
T Consensus       321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI  374 (478)
T ss_pred             CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence            998777666666666666666666666666666666666666666665544443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.17  E-value=9.7e-06  Score=82.20  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=86.2

Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      .-++..+...++-.+|+....++|..                .|.+..++...|..+++.++++.|++.+++|..+.|++
T Consensus       204 ~~LA~v~l~~~~E~~AI~ll~~aL~~----------------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~  267 (395)
T PF09295_consen  204 VLLARVYLLMNEEVEAIRLLNEALKE----------------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE  267 (395)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            34566666777889999999999987                89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      .+.|+.++.+|..+|+++.|+..++.+--+-+.+
T Consensus       268 f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  268 FETWYQLAECYIQLGDFENALLALNSCPMLTYKD  301 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence            9999999999999999999998887554433333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.16  E-value=2.9e-05  Score=79.39  Aligned_cols=126  Identities=7%  Similarity=0.035  Sum_probs=104.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +.+......+..+...|+.++|.....++++.                .+ +..+..-.+.+  ..++++++++.++..+
T Consensus       261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----------------~~-~~~l~~l~~~l--~~~~~~~al~~~e~~l  321 (398)
T PRK10747        261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR----------------QY-DERLVLLIPRL--KTNNPEQLEKVLRQQI  321 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------------CC-CHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence            35667778899999999999999999999885                33 34444333333  4599999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      +..|+++..++.+|.++...+++++|.+.|++++++.|++.. ...+..++..+++.+++.. .|++
T Consensus       322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~-~~~~  386 (398)
T PRK10747        322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAA-MRRD  386 (398)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHH-HHHH
Confidence            999999999999999999999999999999999999999766 4478999999999888843 4443

>PRK11906 transcriptional regulator; Provisional

Probab=98.12  E-value=4.2e-05  Score=77.75  Aligned_cols=94  Identities=11%  Similarity=0.028  Sum_probs=86.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  367 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg  367 (426)
                      ...+-.+|+++-.+|+++                +|.++.++..+|.++...++++.|+..+++|+.++|+.+.+|+..|
T Consensus       316 ~~~~~~~a~~~A~rAvel----------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~  379 (458)
T PRK11906        316 LELAAQKALELLDYVSDI----------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRA  379 (458)
T ss_pred             chHHHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHH
Confidence            456677888888888888                9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         368 RAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      .++...|+.++|++.+++|++++|.-..+-
T Consensus       380 ~~~~~~G~~~~a~~~i~~alrLsP~~~~~~  409 (458)
T PRK11906        380 LVHFHNEKIEEARICIDKSLQLEPRRRKAV  409 (458)
T ss_pred             HHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence            999999999999999999999999765443

>KOG1127|consensus

Probab=98.11  E-value=9.3e-06  Score=87.80  Aligned_cols=140  Identities=12%  Similarity=0.058  Sum_probs=115.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------chhhhhh-------h--cCcchHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQK-------H--FRSYYTAALLNMAA  334 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~~~~~~-------~--~~p~~~~~~~nlA~  334 (426)
                      .+..+..+|..|...-+...|-.+|.+|.++-+.....           ...+.+.       +  ........|..+|.
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            56778889999988889999999999999864322221           1111111       1  11223346777999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .|++-++...|+.+++.||+.+|.+..+|..+|.+|..-|+|..|++.|.+|..++|.+.-+....+-++..+++++++.
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998774

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.11  E-value=1.8e-05  Score=77.04  Aligned_cols=137  Identities=15%  Similarity=0.138  Sum_probs=95.5

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ...+..+...|+.|-..++|++|..+|.+|.++......          ...-...|.+.+.++.+. ++++|+.++++|
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A  100 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD----------KFEAAKAYEEAANCYKKG-DPDEAIECYEKA  100 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence            346777888888888888999999999999887543221          223355677777776555 899999999998


Q ss_pred             HHhCC--C----CHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         353 LLMEP--N----NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPN--D----QQILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       353 L~ldp--~----~~kal~~lg~a~~~l-g~~~~Al~~l~kAl~l~P~--n----~~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      +.+--  .    -.+++..+|.+|... +++++|++.|++|+++...  .    ..+...++.+...++++.++.. .|.
T Consensus       101 ~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~-~~e  179 (282)
T PF14938_consen  101 IEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE-IYE  179 (282)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH-HHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH-HHH
Confidence            87631  1    266888889988888 8999999999999887321  1    3466677788888888887754 444


Q ss_pred             hh
Q psy6102         420 RM  421 (426)
Q Consensus       420 k~  421 (426)
                      +.
T Consensus       180 ~~  181 (282)
T PF14938_consen  180 EV  181 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.11  E-value=2.7e-05  Score=82.06  Aligned_cols=55  Identities=11%  Similarity=0.064  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102         291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  362 (426)
Q Consensus       291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka  362 (426)
                      ++++|...|++|+++                +| +..+|..+|.++...|++++|++.|.+|+.++|.++..
T Consensus       435 ~~~~A~~~l~rAl~L----------------~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        435 KTDEAYQAINKAIDL----------------EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             CHHHHHHHHHHHHHc----------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            455555555555555                88 57899999999999999999999999999999998863

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.08  E-value=6.9e-06  Score=53.02  Aligned_cols=33  Identities=30%  Similarity=0.667  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      ++|+++|.++..+|++++|+.+|++|++++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            566666666666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.07  E-value=0.00014  Score=69.40  Aligned_cols=128  Identities=13%  Similarity=0.093  Sum_probs=106.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-------------
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-------------  341 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~-------------  341 (426)
                      .....+.+|..+++.++|.+|+..|++.++..|.             +|....+++.+|.++..++.             
T Consensus        68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~  134 (243)
T PRK10866         68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSD  134 (243)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC-------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccc
Confidence            4456789999999999999999999999999554             56778899999999866641             


Q ss_pred             -----HHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHH
Q psy6102         342 -----YKRAINLCDDILLMEPNNV-----------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQI  396 (426)
Q Consensus       342 -----~~~Ai~~~~~AL~ldp~~~-----------------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a  396 (426)
                           ..+|+..+++.++.-|+..                 +--+..|.-|...|.|..|+.-++.+++-.|+.   +++
T Consensus       135 rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea  214 (243)
T PRK10866        135 RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA  214 (243)
T ss_pred             cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence                 3578899999999999872                 224567788999999999999999999999876   567


Q ss_pred             HHHHHHHHHHHhhHHHHHH
Q psy6102         397 LKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       397 ~~~l~~i~~~l~~~~~a~k  415 (426)
                      +..+...+..++..+++..
T Consensus       215 l~~l~~ay~~lg~~~~a~~  233 (243)
T PRK10866        215 LPLMENAYRQLQLNAQADK  233 (243)
T ss_pred             HHHHHHHHHHcCChHHHHH
Confidence            7788888888888877754

>KOG1156|consensus

Probab=98.06  E-value=4.3e-05  Score=79.64  Aligned_cols=120  Identities=18%  Similarity=0.179  Sum_probs=75.8

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .+-..|..+...|+-++|..+-..+++.                ++....+|.-+|.++..-++|++||.+|..||.++|
T Consensus        43 slAmkGL~L~~lg~~~ea~~~vr~glr~----------------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~  106 (700)
T KOG1156|consen   43 SLAMKGLTLNCLGKKEEAYELVRLGLRN----------------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK  106 (700)
T ss_pred             hHHhccchhhcccchHHHHHHHHHHhcc----------------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            3445566666666666666666666665                566666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      +|...|+-++.....+++++.....-.+.+++.|.....|...+...-.++.+..+
T Consensus       107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen  107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666555555555555444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.06  E-value=4e-05  Score=74.63  Aligned_cols=110  Identities=14%  Similarity=0.184  Sum_probs=87.2

Q ss_pred             hHHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~-g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ..+..+..+|..|... +++++|+.+|++|+++......          ......++.+.|.++.++++|++|++.|+++
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS----------PHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4678899999999999 9999999999999998543321          2234668889999999999999999999999


Q ss_pred             HHhCCC------CH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         353 LLMEPN------NV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       353 L~ldp~------~~-kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      ....-+      ++ +.++..+.|++..||+..|...+++....+|.-
T Consensus       182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            875321      13 356788889999999999999999999999854

>KOG4648|consensus

Probab=98.05  E-value=8.3e-06  Score=79.18  Aligned_cols=87  Identities=18%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +-.+|..|++.|.|++||.+|.+++.++|.|+-.+.+||.+|+.+.+|..|..+++.|+.|+-....++...+.+...++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999999999999999999999999999999888888888888888888


Q ss_pred             hHHHHHH
Q psy6102         409 HHLNLEK  415 (426)
Q Consensus       409 ~~~~a~k  415 (426)
                      +..++-+
T Consensus       180 ~~~EAKk  186 (536)
T KOG4648|consen  180 NNMEAKK  186 (536)
T ss_pred             hHHHHHH
Confidence            8777654

>KOG0495|consensus

Probab=98.04  E-value=6.6e-05  Score=78.32  Aligned_cols=123  Identities=11%  Similarity=0.047  Sum_probs=99.6

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      |+..++...-+++.++|++++.+||+.                -|....+|..+|.++.++++.+.|.+.|...++..|.
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~----------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~  717 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKS----------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN  717 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHh----------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence            444444444455555555555555555                7888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102         359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       359 ~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      .+-.|..++.+-...|....|...++++.--+|+|...+...-++..+.|..+++...+
T Consensus       718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999888888888888887776433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.99  E-value=0.00014  Score=76.56  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      ..+++.+|..|..+|++++|+++.++||...|..++.|+.+|.+|.+.|++.+|.+.++.|..+|+.|.-+......-..
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             HHhhHHHHHH
Q psy6102         406 QMRHHLNLEK  415 (426)
Q Consensus       406 ~l~~~~~a~k  415 (426)
                      +.++.++|.+
T Consensus       274 Ra~~~e~A~~  283 (517)
T PF12569_consen  274 RAGRIEEAEK  283 (517)
T ss_pred             HCCCHHHHHH
Confidence            9888888865

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4555|consensus

Probab=97.99  E-value=0.00018  Score=61.03  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=72.2

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ----QILKEIAFVRK  405 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~----~a~~~l~~i~~  405 (426)
                      -..|.++..-|+.+.|++-+.++|.+-|..+.+|.++++++..+|+.++|++++++|+++...-.    ++....+.+++
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            34567778899999999999999999999999999999999999999999999999999965432    45566677777


Q ss_pred             HHhhHHHHHH
Q psy6102         406 QMRHHLNLEK  415 (426)
Q Consensus       406 ~l~~~~~a~k  415 (426)
                      .+++-+.+.+
T Consensus       127 l~g~dd~AR~  136 (175)
T KOG4555|consen  127 LLGNDDAARA  136 (175)
T ss_pred             HhCchHHHHH
Confidence            7776665543

>KOG1174|consensus

Probab=97.98  E-value=5.3e-05  Score=75.32  Aligned_cols=133  Identities=14%  Similarity=0.123  Sum_probs=88.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH----
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD----  350 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~----  350 (426)
                      ....+...|+.+.+.++.++|+-.|..|+.+                .|...++|..+-.||+..+.+.+|....+    
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~  396 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQML----------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIR  396 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhc----------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            4566777788888888888888888888877                78888888888888888887777765444    


Q ss_pred             --------------------------------HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         351 --------------------------------DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       351 --------------------------------~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                                                      ++|+++|.+..|...+|..+...|+++.++..++++|...|++. ...
T Consensus       397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~  475 (564)
T KOG1174|consen  397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHN  475 (564)
T ss_pred             HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHH
Confidence                                            44444555666666666666666666666666666666555433 344


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         399 EIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       399 ~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      .|+.+.......+++.-+-+..+.-|
T Consensus       476 ~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  476 HLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            55556666666666555544444433

>KOG4234|consensus

Probab=97.97  E-value=6.4e-05  Score=68.23  Aligned_cols=91  Identities=18%  Similarity=0.237  Sum_probs=79.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~-----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      -.-|.-+++.|+|.+|..-|..||.+.|..     .-.|.++|.|++.++.++.|+.++.+|++|+|.+..++...+.++
T Consensus        99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay  178 (271)
T KOG4234|consen   99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY  178 (271)
T ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence            345778889999999999999999999976     347889999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHhh
Q psy6102         405 KQMRHHLNLEKMTYARM  421 (426)
Q Consensus       405 ~~l~~~~~a~k~~~~k~  421 (426)
                      ..+.+++++.. .|+++
T Consensus       179 ek~ek~eeale-DyKki  194 (271)
T KOG4234|consen  179 EKMEKYEEALE-DYKKI  194 (271)
T ss_pred             HhhhhHHHHHH-HHHHH
Confidence            99988877653 44444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.97  E-value=0.00037  Score=65.80  Aligned_cols=125  Identities=14%  Similarity=0.197  Sum_probs=101.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..|++.|....+.|+|.+|+..|.......+.             .|....+...++.++++.++|++|+...++-+
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi   98 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI   98 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            36788999999999999999999999988876433             56667899999999999999999999999999


Q ss_pred             HhCCCCH---HHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhHH
Q psy6102         354 LMEPNNV---KALFRRGRAQVSMNN--------FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL  411 (426)
Q Consensus       354 ~ldp~~~---kal~~lg~a~~~lg~--------~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~~  411 (426)
                      .+.|.++   -++|.+|.+++..=+        ..+|+..|+..+.-.|+.+   .+...+..+...+..++
T Consensus        99 ~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E  170 (254)
T COG4105          99 RLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE  170 (254)
T ss_pred             HhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            9999774   478889999766522        3568889999999999985   45555555555554444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.97  E-value=0.00021  Score=75.07  Aligned_cols=124  Identities=12%  Similarity=0.165  Sum_probs=96.7

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-----CHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----AYKRAINLCDD  351 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-----~~~~Ai~~~~~  351 (426)
                      ..+-.+|..+.+.|++++|...|...|+.                +|.+...|..+..|..-..     +.+...+.|++
T Consensus        39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----------------NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~  102 (517)
T PF12569_consen   39 AVLEKRAELLLKLGRKEEAEKIYRELIDR----------------NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDE  102 (517)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHH
Confidence            44667899999999999999999999999                9999999999988872211     22222222222


Q ss_pred             HHHhCC--------------------------------------------------------------------------
Q psy6102         352 ILLMEP--------------------------------------------------------------------------  357 (426)
Q Consensus       352 AL~ldp--------------------------------------------------------------------------  357 (426)
                      .-...|                                                                          
T Consensus       103 l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~  182 (517)
T PF12569_consen  103 LAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNG  182 (517)
T ss_pred             HHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCc
Confidence            211111                                                                          


Q ss_pred             -------CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         358 -------NN--VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       358 -------~~--~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                             ..  ..++|.+|+.|-.+|++++|+++.++||+..|...+.....+++++..|+..+|...
T Consensus       183 ~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~  250 (517)
T PF12569_consen  183 DDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA  250 (517)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence                   01  246799999999999999999999999999999999999999999999999988653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.97  E-value=1.7e-05  Score=54.59  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  368 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~  368 (426)
                      ++..+|.+|.++|++++|++.|+++++++|+++.+|+.+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            34455555555555555555555555555555555555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.97  E-value=1.7e-05  Score=54.62  Aligned_cols=43  Identities=21%  Similarity=0.234  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      +.+++.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3689999999999999999999999999999999999998875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.96  E-value=7.6e-06  Score=53.20  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy6102         348 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ  381 (426)
Q Consensus       348 ~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~  381 (426)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999863

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.96  E-value=0.00019  Score=64.50  Aligned_cols=122  Identities=18%  Similarity=0.231  Sum_probs=103.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .....+.+|+.+...|+|.+|..+|++++.=+               -..+..++..+|.+.+..+++..|...+++..+
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~---------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e  152 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGI---------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME  152 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence            45667889999999999999999999999742               567788999999999999999999999999999


Q ss_pred             hCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHH
Q psy6102         355 MEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  412 (426)
Q Consensus       355 ldp~--~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~  412 (426)
                      .+|.  .++...-+|.+|..+|++..|...|+.++...|+- ++.......+..+++..+
T Consensus       153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhH
Confidence            9984  58888899999999999999999999999999864 455555666666664443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.95  E-value=2e-05  Score=50.59  Aligned_cols=34  Identities=32%  Similarity=0.633  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      +++|+.+|.+++.+|++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.94  E-value=5.2e-05  Score=74.16  Aligned_cols=111  Identities=19%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHH
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK--AYKRAINLCDDILLMEPNNVKA  362 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg--~~~~Ai~~~~~AL~ldp~~~ka  362 (426)
                      .+.+.++++.|.+.++..-+.                +++..-.....|++.+..|  .+.+|...|++.....+.++..
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~----------------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~  203 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQI----------------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKL  203 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCC----------------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhc----------------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHH
Confidence            444555556655555444332                4444444444444555555  4777777777766666677777


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         363 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       363 l~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      +..+|.|++.+|+|++|.+.+++|+..+|.++.++.++.-+...+++..
T Consensus       204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~  252 (290)
T PF04733_consen  204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT  252 (290)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence            7777777777777777777777777777777777777777766666663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=1.8e-05  Score=51.01  Aligned_cols=34  Identities=21%  Similarity=0.466  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      +.+|+++|.+++.++++++|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=0.00015  Score=69.01  Aligned_cols=93  Identities=15%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q psy6102         329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAF  402 (426)
Q Consensus       329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~l~~  402 (426)
                      .++.|.-+++.|+|..|...+..-++.-|+.   +.|+|++|.+++.+|+|++|...|..+++-.|++   ++++..++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7788888899999999999999999999876   7899999999999999999999999999988876   588999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhh
Q psy6102         403 VRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       403 i~~~l~~~~~a~k~~~~k~f  422 (426)
                      +...+++.++|-+ +|+.+.
T Consensus       224 ~~~~l~~~d~A~a-tl~qv~  242 (262)
T COG1729         224 SLGRLGNTDEACA-TLQQVI  242 (262)
T ss_pred             HHHHhcCHHHHHH-HHHHHH
Confidence            9999999887754 555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.89  E-value=4.5e-05  Score=84.02  Aligned_cols=112  Identities=11%  Similarity=0.068  Sum_probs=86.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc---chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS---QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~---~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ....++.+|..+++.+++..|...  .++...+....-   +..-......+.+..+++.+|.||-++|++++|...|++
T Consensus        64 ~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer  141 (906)
T PRK14720         64 SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER  141 (906)
T ss_pred             ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            445677777788888887777766  555553221100   001111112466667999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      +|+++|+|+.++.++|..|... ++++|++.+.+|+..
T Consensus       142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            9999999999999999999999 999999999999875

>KOG1130|consensus

Probab=97.88  E-value=5.2e-05  Score=75.33  Aligned_cols=133  Identities=13%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ....+-++||.||-.|+|+.||..-+.-|++...+..          ....-.++.|+|.|+.-+|+++.|++.|+.++.
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh----------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            5567889999999999999999999999988665542          223356899999999999999999999998765


Q ss_pred             h----CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102         355 M----EPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       355 l----dp~--~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~------n~~a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      +    -..  .+...|.+|.+|..+.++..|+.++++-|.+..+      ...+.+.|+.....++..+++..-+
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa  338 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA  338 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            4    333  3566899999999999999999999988776432      3456777888888888888876533

>KOG0495|consensus

Probab=97.85  E-value=0.00019  Score=75.01  Aligned_cols=150  Identities=14%  Similarity=0.071  Sum_probs=117.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch-----------h-------hhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-----------K-------TQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~-----------~-------~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      ....|...+..++..|+...|.....+|++..+.....+.           .       ..+- ...-...+|+.-+...
T Consensus       583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar-~~sgTeRv~mKs~~~e  661 (913)
T KOG0495|consen  583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR-SISGTERVWMKSANLE  661 (913)
T ss_pred             chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh-ccCCcchhhHHHhHHH
Confidence            4567888889999999999999999999987543222111           0       1111 1233345777777778


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ..++..++|+..|+++|+.-|+..+.|..+|+++..+++.+.|.+.|...++..|...-.|..+..+....+..-++.--
T Consensus       662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i  741 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI  741 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999888766555433


Q ss_pred             HHHhhhcCC
Q psy6102         417 TYARMFQNG  425 (426)
Q Consensus       417 ~~~k~f~~~  425 (426)
                      +=+....|+
T Consensus       742 ldrarlkNP  750 (913)
T KOG0495|consen  742 LDRARLKNP  750 (913)
T ss_pred             HHHHHhcCC
Confidence            333344444

>KOG1127|consensus

Probab=97.81  E-value=9.2e-05  Score=80.35  Aligned_cols=116  Identities=12%  Similarity=0.167  Sum_probs=104.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      +...|..+|-.|.+.+++..|+..|+.|++.                +|.+..+|..+|.+|.+.|+|..|++.+++|..
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence            4566888999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      ++|.+.-+-|-.+.....+|.|.+|+..++..+.-...-..++..++.++.+
T Consensus       625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            9999999999999999999999999999999988765555566666655554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.80  E-value=0.00033  Score=58.32  Aligned_cols=108  Identities=12%  Similarity=0.202  Sum_probs=82.2

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH---
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL---  354 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~---  354 (426)
                      .....|....+.+-|++|...|.+|++.....+    .++.-..+..+.-++..++.++..+|+|++++....++|.   
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP----~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIP----AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC----hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            334566677788899999999999999854443    3333344556777899999999999999999999999985   


Q ss_pred             ----hCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         355 ----MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       355 ----ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                          |+.+.    ..+.|++|.++..+|+.++|+..|+++-+.
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                45554    556789999999999999999999999764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.76  E-value=0.00036  Score=60.66  Aligned_cols=112  Identities=17%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      .+...|......++...++..+.+++.+.......      +-...-..+......++..++..+...|++++|+..+.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34455666667788899999999999875321111      112233344566778889999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      ++.++|.+-.+|..+-.+|..+|++.+|++.|+++...
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.75  E-value=0.00013  Score=71.32  Aligned_cols=94  Identities=17%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102         290 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  369 (426)
Q Consensus       290 g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a  369 (426)
                      ..+.+|...|++..+.                .+..+.++..+|.|++.+|+|++|.+.+.+|+..+|.+++++.++..+
T Consensus       181 e~~~~A~y~f~El~~~----------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDK----------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC  244 (290)
T ss_dssp             TCCCHHHHHHHHHHCC----------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            4688899999885543                466788999999999999999999999999999999999999999999


Q ss_pred             HHHcCCh-HHHHHHHHHHHHhCCCcHHHHHH
Q psy6102         370 QVSMNNF-EQGLQDYEQALDLLPNDQQILKE  399 (426)
Q Consensus       370 ~~~lg~~-~~Al~~l~kAl~l~P~n~~a~~~  399 (426)
                      ...+|+. +.+.+++.+....+|+++-+...
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999 66777899988899998865543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785|consensus

Probab=97.73  E-value=0.00027  Score=69.19  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ..+|.+++..-.|.+||+.|+++|.-+|.....-.++|.||+.+.-|+-+.+.+...|+..|+..-+...+.-..-++
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl  232 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL  232 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence            344555555667888888888888888888888888888888888888888888888888888877766665554443

>KOG4642|consensus

Probab=97.73  E-value=6.8e-05  Score=69.72  Aligned_cols=91  Identities=16%  Similarity=0.102  Sum_probs=82.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      -.-|.+++.-+.|..|+.+|.+||.++|..+..|-+++.|++.+.+++.+.++..+|++++|+..-+...++.+......
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34466777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy6102         410 HLNLEKMTYAR  420 (426)
Q Consensus       410 ~~~a~k~~~~k  420 (426)
                      +.++.+.+-+.
T Consensus        94 ~~eaI~~Lqra  104 (284)
T KOG4642|consen   94 YDEAIKVLQRA  104 (284)
T ss_pred             ccHHHHHHHHH
Confidence            98887654443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.71  E-value=8.6e-05  Score=47.55  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      +.+|+.+|.+++++|++++|+++++++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.71  E-value=0.00021  Score=51.32  Aligned_cols=49  Identities=10%  Similarity=0.306  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      +.+|.+|.+++.+|+|++|+.+.+.+|+++|+|.++......+...+.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4688999999999999999999999999999999999988888776543

>KOG1130|consensus

Probab=97.62  E-value=0.00048  Score=68.64  Aligned_cols=124  Identities=15%  Similarity=0.144  Sum_probs=98.9

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      .++.++||.+.-.|+++.|+++|++++.+.-....          ....+..++.+|.+|.-++++.+||.+..+-|++-
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~----------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN----------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc----------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999987433322          34456688999999999999999999999877664


Q ss_pred             C------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCC-cHHHHHHHHHHHHHHhhH
Q psy6102         357 P------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPN-DQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       357 p------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l-----~P~-n~~a~~~l~~i~~~l~~~  410 (426)
                      .      ....+++.+|.++..+|..++|+.+.++.+++     +|. -..+..++..+...++..
T Consensus       306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE  371 (639)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence            2      45789999999999999999999999888875     233 234566666666665543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.59  E-value=0.0029  Score=55.60  Aligned_cols=68  Identities=29%  Similarity=0.552  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~-~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~  392 (426)
                      ....+..++..+...+++..|+..+.+++...+. ...++..++.++...+++..|+..+.+++...|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         166 LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            3334444444444444555555555555544444 3444555555555555555555555555554444

>KOG3785|consensus

Probab=97.57  E-value=0.00038  Score=68.17  Aligned_cols=103  Identities=10%  Similarity=0.112  Sum_probs=78.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  364 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~  364 (426)
                      .+..+.||..|+...+-.+..-               +.....+-..+|.|++++|+|++|+..|+.+..-+..+.+.+.
T Consensus        31 dfls~rDytGAislLefk~~~~---------------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v   95 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLD---------------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV   95 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccc---------------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence            3455688999999888777551               1111345567899999999999999999999998888999999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      ++|.|++.+|.|.+|...-.+|    |+++.....+-.+.-+
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHK  133 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHH
Confidence            9999999999999998776655    5555444444333333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.53  E-value=0.00022  Score=65.60  Aligned_cols=96  Identities=11%  Similarity=0.032  Sum_probs=84.8

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      +...+.+++.||..|-.+|-+.-|..++.++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999988887777


Q ss_pred             HHHHHHhhHHHHHHHH
Q psy6102         402 FVRKQMRHHLNLEKMT  417 (426)
Q Consensus       402 ~i~~~l~~~~~a~k~~  417 (426)
                      ...---+++.-++...
T Consensus       141 i~~YY~gR~~LAq~d~  156 (297)
T COG4785         141 IALYYGGRYKLAQDDL  156 (297)
T ss_pred             eeeeecCchHhhHHHH
Confidence            6666666666665543

>PRK10941 hypothetical protein; Provisional

Probab=97.52  E-value=0.0012  Score=63.84  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      .+.+.|+=.+|++.++++.|+.+.+..|.++|+++.-+.-+|.+|..+|.+..|+.+++..++..|+++.+.....++..
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            45778888999999999999999999999999999999999999999999999999999999999999987766665544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.51  E-value=0.0043  Score=54.49  Aligned_cols=124  Identities=20%  Similarity=0.270  Sum_probs=83.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHH-HHHHccCHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA-VQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~-~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ....+...|..+...+++..|+..+.+++..                .+.........+. ++...++++.|+..+.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457          94 LAEALLNLGLLLEALGKYEEALELLEKALAL----------------DPDPDLAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC----------------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556667777777777777777777777765                3333333444444 6777777777777777777


Q ss_pred             HhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHH
Q psy6102         354 LMEP---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       354 ~ldp---~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .++|   .....++.++..+...++++.|+..+.+++...|. ...+...+..++...+...++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  222 (291)
T COG0457         158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL  222 (291)
T ss_pred             hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHH
Confidence            7666   45666666666677777777777777777777777 5666666666666665444443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.49  E-value=0.00011  Score=47.71  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH
Q psy6102         298 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN  347 (426)
Q Consensus       298 ~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~  347 (426)
                      +|++||++                +|.++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~----------------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL----------------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH----------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            37889998                99999999999999999999999973

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.46  E-value=0.0002  Score=45.87  Aligned_cols=32  Identities=28%  Similarity=0.638  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~  392 (426)
                      ++|+.+|.+|..+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777777777777777777777777777764

...

>KOG2376|consensus

Probab=97.43  E-value=0.0018  Score=67.24  Aligned_cols=118  Identities=11%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-----------chhhhhh---hcCc---chHHHHHHHHHHHHHc
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQK---HFRS---YYTAALLNMAAVQLKF  339 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-----------~~~~~~~---~~~p---~~~~~~~nlA~~~~~l  339 (426)
                      ..++..-+.+-..++|++|+....+.+...+.....           ...+++.   +..+   .+....+..|.|.+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            445556666677778888877777777652111110           0011111   1111   1122225677777777


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       340 g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      +..++|+.+++   .+++...+.+.-+|++++.+++|++|+..|+..++-+-++.+..
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~  147 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE  147 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence            77777777776   55666667777777777777777777777777766655554433

>KOG0551|consensus

Probab=97.41  E-value=0.0011  Score=64.42  Aligned_cols=89  Identities=19%  Similarity=0.170  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      .+.-|-.-|.-|++-++|..|+..|.++|+....+    +-.|.+||.|.+.+|+|..|+.++.+|+.++|.+..+...-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            45566677889999999999999999999886543    66799999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHH
Q psy6102         401 AFVRKQMRHHLNL  413 (426)
Q Consensus       401 ~~i~~~l~~~~~a  413 (426)
                      +.|...+.+..++
T Consensus       160 Akc~~eLe~~~~a  172 (390)
T KOG0551|consen  160 AKCLLELERFAEA  172 (390)
T ss_pred             hHHHHHHHHHHHH
Confidence            9998888884443

>KOG1941|consensus

Probab=97.41  E-value=0.0013  Score=64.63  Aligned_cols=127  Identities=15%  Similarity=0.181  Sum_probs=96.5

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      .....+|+.+...+.++++++.|++|+.+......          ......++..++..+-+++++++|+-+..+|+++-
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D----------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv  192 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD----------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV  192 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC----------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence            55667999999999999999999999998544331          12345688999999999999999999999988875


Q ss_pred             CCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCc----HHHHHHHHHHHHHHhhHHHH
Q psy6102         357 PNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PND----QQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       357 p~~----------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~--P~n----~~a~~~l~~i~~~l~~~~~a  413 (426)
                      .+.          ..++|+++.++..+|+...|.++.+.|.++.  -.|    .....-++.+++..++.+.+
T Consensus       193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a  265 (518)
T KOG1941|consen  193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA  265 (518)
T ss_pred             HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence            432          4578999999999999999999999987753  333    23444556666666555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0066  Score=58.52  Aligned_cols=117  Identities=15%  Similarity=0.102  Sum_probs=96.9

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH------
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD------  350 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~------  350 (426)
                      +.-...+......+++.+|...+..++..                .|.+..+...+|.|++..|+.+.|...+.      
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHh----------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            44567788889999999999999999999                88889999999999999999977755333      


Q ss_pred             ----------------------------HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHHHH
Q psy6102         351 ----------------------------DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQILKEI  400 (426)
Q Consensus       351 ----------------------------~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P--~n~~a~~~l  400 (426)
                                                  +.+.-||++..+-+.+|..+...|++++|++.+-..++.+-  .+..+++.+
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence                                        23334799999999999999999999999999888888754  456777877


Q ss_pred             HHHHHHHhh
Q psy6102         401 AFVRKQMRH  409 (426)
Q Consensus       401 ~~i~~~l~~  409 (426)
                      -.+...++.
T Consensus       279 le~f~~~g~  287 (304)
T COG3118         279 LELFEAFGP  287 (304)
T ss_pred             HHHHHhcCC
Confidence            777777773

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.39  E-value=0.0061  Score=60.68  Aligned_cols=128  Identities=13%  Similarity=0.115  Sum_probs=112.2

Q ss_pred             hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      .....+......|..-+..|+|.+|.+...++-+.                .+.-...|..=|.+..++|+++.|-.++.
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~----------------~e~p~l~~l~aA~AA~qrgd~~~an~yL~  142 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----------------GEQPVLAYLLAAEAAQQRGDEDRANRYLA  142 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----------------CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            34456777888999999999999999999987776                66667788888889999999999999999


Q ss_pred             HHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         351 DILLMEP-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       351 ~AL~ldp-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      ++-++.+ +..-++..++..+...+++..|..-..++++..|.+++++....+++..++...+.-
T Consensus       143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll  207 (400)
T COG3071         143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL  207 (400)
T ss_pred             HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence            9999944 567788999999999999999999999999999999999999999999998887654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.37  E-value=0.0013  Score=57.07  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=71.2

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---HH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ---IL  397 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~---a~  397 (426)
                      .....+++.|...++.|+|.+|++.++.+...-|-.   ..+.+.+|.+|+..+++++|+..+++-++|+|.++.   ++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            446688999999999999999999999999887744   789999999999999999999999999999999864   44


Q ss_pred             HHHHHHHHHH
Q psy6102         398 KEIAFVRKQM  407 (426)
Q Consensus       398 ~~l~~i~~~l  407 (426)
                      ...+.+.-..
T Consensus        88 Y~~gL~~~~~   97 (142)
T PF13512_consen   88 YMRGLSYYEQ   97 (142)
T ss_pred             HHHHHHHHHH
Confidence            5555444443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.35  E-value=0.00081  Score=67.17  Aligned_cols=121  Identities=10%  Similarity=0.158  Sum_probs=94.9

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch--hhhhhhcCcchHHHHHHHHHHHHHccCHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI  346 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~--~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai  346 (426)
                      ...+.+..+.....|..+|++++|..|+-.|..||+++.+-.....  .....++.....-+...+..||+++++.+-|+
T Consensus       169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL  248 (569)
T PF15015_consen  169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL  248 (569)
T ss_pred             ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence            3455567777788899999999999999999999998754322111  00111111223446778999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         347 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       347 ~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      ....+.|-++|.+..-+++.|.|+..+.+|.+|...+-.|.-+
T Consensus       249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887776543

>KOG2376|consensus

Probab=97.31  E-value=0.0029  Score=65.78  Aligned_cols=117  Identities=15%  Similarity=0.268  Sum_probs=92.1

Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME---  356 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld---  356 (426)
                      ++.+.++|+.+..++|+..++   -+                ++....++..+|.+++++++|++|+..|+..++-+   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GL----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cc----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            577888888888888888887   22                56667788899999999999999999998875443   


Q ss_pred             ---------------------------C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCc-H------
Q psy6102         357 ---------------------------P-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-------PND-Q------  394 (426)
Q Consensus       357 ---------------------------p-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~-------P~n-~------  394 (426)
                                                 | +..+.+|+.|.++...|+|.+|++.+++|+++.       -.+ .      
T Consensus       144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el  223 (652)
T KOG2376|consen  144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL  223 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence                                       2 246789999999999999999999999995431       112 2      


Q ss_pred             -HHHHHHHHHHHHHhhHHHHHH
Q psy6102         395 -QILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       395 -~a~~~l~~i~~~l~~~~~a~k  415 (426)
                       .+...+..++..+|+.+++..
T Consensus       224 ~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  224 NPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             HHHHHHHHHHHHHhcchHHHHH
Confidence             356677778888888887754

>KOG2796|consensus

Probab=97.28  E-value=0.006  Score=57.87  Aligned_cols=125  Identities=13%  Similarity=0.178  Sum_probs=78.3

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH--
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL--  353 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL--  353 (426)
                      ....+.+.+.+...+.|.-.+..|.+.++..               .|..+.+...++.+.++.|+.+.|..+++.+-  
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~  241 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV  241 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3445667778888889999999999888862               25555666666666666666666666666332  


Q ss_pred             --HhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 --LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 --~ldp--~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                        +++.  .+..++.+.+.++...++|.+|...|.+++..||.++.+..+.+.|+.-+++..+|.|
T Consensus       242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence              2332  2333444555555555666666666666666666666666666666666666655554

>KOG4151|consensus

Probab=97.26  E-value=0.00068  Score=72.50  Aligned_cols=127  Identities=18%  Similarity=0.264  Sum_probs=109.4

Q ss_pred             ccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH--ccCHHHH
Q psy6102         268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRA  345 (426)
Q Consensus       268 ~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~--lg~~~~A  345 (426)
                      .....+..+...+..||.+|++++|..|...|..++.+++..            +.....+..+++.|++.  +++|..+
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~------------~~~~a~~~~~~~s~~m~~~l~~~~~~  112 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD------------HHVVATLRSNQASCYMQLGLGEYPKA  112 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc------------chhhhhHHHHHHHHHhhcCccchhhh
Confidence            455566778899999999999999999999999999986522            46778889999999986  4699999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       346 i~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      +..|+-|+...|...++++.++.+|..+++++-|++++.-....+|.+..+.....+++..
T Consensus       113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997666644444443

>KOG2053|consensus

Probab=97.20  E-value=0.007  Score=65.64  Aligned_cols=113  Identities=12%  Similarity=0.135  Sum_probs=96.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  365 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~  365 (426)
                      ....+++.+|+....+.++.                .|...-+..--|..+.++|++++|..+++..-.+-+++...+-.
T Consensus        19 ~ld~~qfkkal~~~~kllkk----------------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK----------------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence            44567888999888888887                88888888899999999999999997666655666788888888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       366 lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +-.||..++++++|..+|++++..+|+ .+....+=.++.+.+.+.+.++
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 8877777778887777665554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.19  E-value=0.0067  Score=59.07  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=94.4

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILLME  356 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~-lg~~~~Ai~~~~~AL~ld  356 (426)
                      .|....+..-+.+..+.|...|.+|++.                .+....+|...|.+-++ .++.+.|...|+.+++.-
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~----------------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f   66 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD----------------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF   66 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence            4555666777777899999999999854                56678899999999777 577777999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHHhhHH
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL  411 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~---~a~~~l~~i~~~l~~~~  411 (426)
                      |.+...|.....-+..+++.+.|...|++++..-|...   .++...-..+...|+.+
T Consensus        67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~  124 (280)
T PF05843_consen   67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE  124 (280)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred             CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999988776   56666666666666444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.16  E-value=0.00071  Score=43.28  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      .+|+.+|.++.++|++++|+++++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999964

...

>KOG2796|consensus

Probab=97.15  E-value=0.0067  Score=57.53  Aligned_cols=120  Identities=14%  Similarity=0.238  Sum_probs=98.0

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +.....+|....+.||-+.|..+|++.-+.....+.          -.....+..|.+.+|+-.++|..|...+++.+..
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~----------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~  281 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG----------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM  281 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc----------cchhHHHHhhhhhheecccchHHHHHHHhhcccc
Confidence            445678899999999999999999876654322221          2455667888899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRK  405 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~l~~i~~  405 (426)
                      ||.++.+..+.|.|++.+|+...|++..+.++...|..   ..+..++..++.
T Consensus       282 D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  282 DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE  334 (366)
T ss_pred             CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999975   344445554444

>KOG0376|consensus

Probab=97.14  E-value=0.00049  Score=69.92  Aligned_cols=88  Identities=20%  Similarity=0.219  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      .+-+-|.-.++-++|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|....+....+.....+
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            34456777888999999999999999999999999999999999999999999999999999999988888777777777


Q ss_pred             hhHHHHHH
Q psy6102         408 RHHLNLEK  415 (426)
Q Consensus       408 ~~~~~a~k  415 (426)
                      ++..++-+
T Consensus        86 ~~~~~A~~   93 (476)
T KOG0376|consen   86 GEFKKALL   93 (476)
T ss_pred             HHHHHHHH
Confidence            77777654

>KOG4340|consensus

Probab=97.09  E-value=0.004  Score=59.96  Aligned_cols=125  Identities=17%  Similarity=0.180  Sum_probs=102.6

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH---
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL---  353 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL---  353 (426)
                      -.+..+|..|+...+|..|..+|.+.-.+                .|......+..|..+++.+.+..|+.......   
T Consensus        45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql----------------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~  108 (459)
T KOG4340|consen   45 AGLSLLGYCYYRLQEFALAAECYEQLGQL----------------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNP  108 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCH
Confidence            34677899999999999999999998888                67777777777788888888877776443322   


Q ss_pred             -------Hh--------------------CC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         354 -------LM--------------------EP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       354 -------~l--------------------dp--~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                             ++                    -|  +.+....+.|.+++..|+|++|++-|+.|++...-++....+++.++
T Consensus       109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH  188 (459)
T KOG4340|consen  109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH  188 (459)
T ss_pred             HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence                   11                    13  45778999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHH
Q psy6102         405 KQMRHHLNLEKMT  417 (426)
Q Consensus       405 ~~l~~~~~a~k~~  417 (426)
                      -..+++..+-+..
T Consensus       189 y~~~qyasALk~i  201 (459)
T KOG4340|consen  189 YSSRQYASALKHI  201 (459)
T ss_pred             HhhhhHHHHHHHH
Confidence            9988888876644

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.07  E-value=0.0036  Score=56.18  Aligned_cols=85  Identities=14%  Similarity=0.131  Sum_probs=57.5

Q ss_pred             ccccchhhhHHHHHHhccchhh---hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-
Q psy6102         266 PLVLNQMEDVIRTIKNSGNEYF---KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-  341 (426)
Q Consensus       266 P~~~i~ilk~a~~~~~~G~~~f---~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~-  341 (426)
                      |.......+...++.+++...-   ...-+++|+..|++||.+                +|....+++++|.+|..++. 
T Consensus        22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I----------------~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen   22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI----------------NPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc----------------CCchHHHHHHHHHHHHHHHhh
Confidence            3434444445555555555322   234677788888888888                99999999999999988764 


Q ss_pred             ----------HHHHHHHHHHHHHhCCCCHHHHHHH
Q psy6102         342 ----------YKRAINLCDDILLMEPNNVKALFRR  366 (426)
Q Consensus       342 ----------~~~Ai~~~~~AL~ldp~~~kal~~l  366 (426)
                                |++|..++++|..++|+|......+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence                      8899999999999999987644333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3824|consensus

Probab=97.01  E-value=0.0028  Score=61.13  Aligned_cols=75  Identities=23%  Similarity=0.270  Sum_probs=66.4

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         331 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       331 nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      +.|.-..+.|+.++|...+..||+++|++++++..+|+....-.+.-+|-.+|-+||.++|.|.+++.+.++..-
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP  195 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence            344444578999999999999999999999999999999999999999999999999999999998877665443

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.01  E-value=0.02  Score=65.48  Aligned_cols=145  Identities=8%  Similarity=-0.013  Sum_probs=79.8

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHH------------Hhhcccch-------hhhh----hhcCcchHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI------------KWYNQSQS-------KTQQ----KHFRSYYTAALLNM  332 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~------------~~~~~~~~-------~~~~----~~~~p~~~~~~~nl  332 (426)
                      ...|..+...|.+.|++++|+..|.+..+.-            ..+.....       .+.-    ..+.|+ ...|..+
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaL  585 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGAL  585 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence            3456666777777788888887776665420            00000000       0000    111232 3455556


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhh
Q psy6102         333 AAVQLKFKAYKRAINLCDDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       333 A~~~~~lg~~~~Ai~~~~~AL~ld-p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~  409 (426)
                      -.+|.+.|++++|++.+++..+.+ +.+...|..+..+|...|++++|++.|+...+.  .|+ ...+..+-..+...++
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~  664 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD  664 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Confidence            666666666776766666666655 345566666666666677777777766666654  343 4455555555555566


Q ss_pred             HHHHHHHHHHhhhc
Q psy6102         410 HLNLEKMTYARMFQ  423 (426)
Q Consensus       410 ~~~a~k~~~~k~f~  423 (426)
                      .+++.. .+..|..
T Consensus       665 ~eeA~~-l~~eM~k  677 (1060)
T PLN03218        665 LDKAFE-ILQDARK  677 (1060)
T ss_pred             HHHHHH-HHHHHHH
Confidence            555543 4555543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.90  E-value=0.016  Score=65.36  Aligned_cols=127  Identities=13%  Similarity=0.057  Sum_probs=87.1

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      +..+|..+...|++++|...+.+++........          ......++.++|.+++..|++++|...+.+++.+-..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDV----------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            344555666666777777777766665332110          1122457788899999999999999999999886321


Q ss_pred             --------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         359 --------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-----DQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       359 --------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-----n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                              ....+..+|.++...|++++|...+++++.+...     ...+...++.+....++..++.+
T Consensus       564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  633 (903)
T PRK04841        564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR  633 (903)
T ss_pred             hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                    2334667889999999999999999999886432     23445556677777777766643

>KOG1941|consensus

Probab=96.89  E-value=0.013  Score=57.96  Aligned_cols=108  Identities=18%  Similarity=0.241  Sum_probs=89.0

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      +.+..+|..+-+.+||++|+.+-.+|+++...+....-    .  --....+++.+|.++..+|+...|.++|++|.++.
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~----~--~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW----S--LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch----h--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            45788999999999999999999999999765542100    0  12234578889999999999999999999998774


Q ss_pred             ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         357 ------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       357 ------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                            +.++..+.-+|.+|...|+.+.|..-|+.|...-
T Consensus       237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence                  5567888999999999999999999999998763

>KOG4507|consensus

Probab=96.88  E-value=0.0034  Score=65.14  Aligned_cols=108  Identities=17%  Similarity=0.233  Sum_probs=93.9

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY-YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  360 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~-~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~  360 (426)
                      .|.-.-..|+-..|+.++..|+..                .|. ......++|.+.++.+-...|-..+.++|.+....+
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~----------------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep  676 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNL----------------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP  676 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhcc----------------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence            344444578899999999999987                332 233567999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      -.+|.+|.++..+.+.+.|++.|+.|+.++|+++++...|..+..
T Consensus       677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999999999999999999999999988887766

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.88  E-value=0.0017  Score=40.99  Aligned_cols=33  Identities=15%  Similarity=0.537  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      +|+|++|.++..+|++++|++.|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            366777777777777777777777777777753

>KOG3364|consensus

Probab=96.86  E-value=0.021  Score=48.85  Aligned_cols=88  Identities=15%  Similarity=0.290  Sum_probs=73.2

Q ss_pred             cchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFK---AYKRAINLCDDILL-MEP-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~AL~-ldp-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      .-.....+++|+++.+..   +..+.+..++..++ -.| ..-+.+|.+|..++.+++|+.|+.+++..++.+|+|.++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            344567889999998765   45667888888886 334 4477899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhH
Q psy6102         398 KEIAFVRKQMRHH  410 (426)
Q Consensus       398 ~~l~~i~~~l~~~  410 (426)
                      .....++..+.+.
T Consensus       109 ~Lk~~ied~itke  121 (149)
T KOG3364|consen  109 ELKETIEDKITKE  121 (149)
T ss_pred             HHHHHHHHHHhhc
Confidence            9988888876543

>KOG3081|consensus

Probab=96.82  E-value=0.027  Score=53.62  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKF----KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       327 ~~~~nlA~~~~~l----g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      ..+..+|.+|.++    +.+.+|.-.|++.-+.-|..+..+...+.|++.+++|++|...++.||.-++++++++.++--
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            3445566666553    356777777777776666677777777777777777777777777777777777777777777


Q ss_pred             HHHHHhhHHHHH
Q psy6102         403 VRKQMRHHLNLE  414 (426)
Q Consensus       403 i~~~l~~~~~a~  414 (426)
                      +-..+|+-.+..
T Consensus       250 ~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  250 LALHLGKDAEVT  261 (299)
T ss_pred             HHHHhCCChHHH
Confidence            776666664444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.82  E-value=0.0053  Score=44.04  Aligned_cols=43  Identities=28%  Similarity=0.427  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  369 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a  369 (426)
                      ++++.+|..++++|+|.+|..+++.+|+++|+|..|.--...+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4678899999999999999999999999999998876554443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.82  E-value=0.012  Score=64.62  Aligned_cols=95  Identities=12%  Similarity=0.018  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      ...|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.++++|++...+..+..++.
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            456778888899999999999887653 2334 46678888899999999999999999999999999989999999999


Q ss_pred             HHhhHHHHHHHHHHhhhc
Q psy6102         406 QMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       406 ~l~~~~~a~k~~~~k~f~  423 (426)
                      ..++.+++.+ +++.|-.
T Consensus       540 ~~G~~~~A~~-v~~~m~~  556 (697)
T PLN03081        540 SSGRQAEAAK-VVETLKR  556 (697)
T ss_pred             hCCCHHHHHH-HHHHHHH
Confidence            9999988875 5555543

>KOG1586|consensus

Probab=96.81  E-value=0.026  Score=52.73  Aligned_cols=125  Identities=16%  Similarity=0.189  Sum_probs=90.4

Q ss_pred             HHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~-g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .+.....+|..|-.. .++++||.+|++|-+....          .+....--.++..-|...-.+++|.+|+..|+++.
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~----------ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG----------EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566777777666 8999999999999987421          11133344567777777888999999999999988


Q ss_pred             HhCCCC------HH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHhh
Q psy6102         354 LMEPNN------VK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--ILKEIAFVRKQMRH  409 (426)
Q Consensus       354 ~ldp~~------~k-al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~--a~~~l~~i~~~l~~  409 (426)
                      .-.-+|      ++ .++.-|.|++-..+.-.|...+++..+++|.-..  -...+..+...+.+
T Consensus       182 ~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE  246 (288)
T KOG1586|consen  182 RSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEE  246 (288)
T ss_pred             HHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhh
Confidence            766554      23 4566788999999999999999999999997543  23344444444433

>KOG1586|consensus

Probab=96.79  E-value=0.047  Score=51.07  Aligned_cols=132  Identities=16%  Similarity=0.145  Sum_probs=93.5

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      .+.++.+..-||.|--.++|..|=..|.+|-++.-+...          ..+-...|..-+.||-+ .++.+|+.+++++
T Consensus        31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~s----------khDaat~YveA~~cykk-~~~~eAv~cL~~a   99 (288)
T KOG1586|consen   31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGS----------KHDAATTYVEAANCYKK-VDPEEAVNCLEKA   99 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC----------chhHHHHHHHHHHHhhc-cChHHHHHHHHHH
Confidence            346677778888888899999999999999887433321          33456677777778755 4999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHHhhHHHHHH
Q psy6102         353 LLMEPNN------VKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPNDQQ------ILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       353 L~ldp~~------~kal~~lg~a~~~l-g~~~~Al~~l~kAl~l~P~n~~------a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++--+-      ++-+..+|..|..- .++++|+.+|++|-+.......      .....+.....++++.++.+
T Consensus       100 ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~  175 (288)
T KOG1586|consen  100 IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAID  175 (288)
T ss_pred             HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9886432      55677888888665 9999999999999887654321      22222333344556665543

>KOG4814|consensus

Probab=96.77  E-value=0.0097  Score=62.43  Aligned_cols=103  Identities=13%  Similarity=0.155  Sum_probs=90.2

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .+.+.+..+|+.++|..|++.|...+..++...          .+...+....+++.||+.+.+.+.|.+++.+|=+.+|
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~----------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~  425 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN----------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR  425 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh----------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            467888999999999999999999998753321          1455688999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                      .++-.-+.+-++....+.-++|+.+..+.....
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            999999999999999999999999998877654

>PLN03077 Protein ECB2; Provisional

Probab=96.77  E-value=0.027  Score=63.32  Aligned_cols=120  Identities=8%  Similarity=0.011  Sum_probs=89.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  364 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~  364 (426)
                      .+.+.|++++|..+|.+..+.             ..+.| +...|..+..++.+.|++++|.+.+++. .+.|+ +..|-
T Consensus       598 a~~~~g~v~ea~~~f~~M~~~-------------~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~  661 (857)
T PLN03077        598 ACSRSGMVTQGLEYFHSMEEK-------------YSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWG  661 (857)
T ss_pred             HHhhcChHHHHHHHHHHHHHH-------------hCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHH
Confidence            344455555555555554422             11133 3578888999999999999999988764 45564 66677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      .+-.++..-++.+.|....+++++++|++......+..++...++.+++.+ +.+.|
T Consensus       662 aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~-vr~~M  717 (857)
T PLN03077        662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR-VRKTM  717 (857)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH-HHHHH
Confidence            777777888999999999999999999999999999999999999888765 34444

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.74  E-value=0.038  Score=63.24  Aligned_cols=94  Identities=11%  Similarity=0.047  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFV  403 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld-p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i  403 (426)
                      ..|..+..++.+.|++++|.+.+.+.++.. +-+...|..+..+|...|++++|++.|++..+.  .| +...+..+-..
T Consensus       650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~g  728 (1060)
T PLN03218        650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITA  728 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence            344445555555555555555555555433 234455555555666666666666666555432  23 34445555555


Q ss_pred             HHHHhhHHHHHHHHHHhhh
Q psy6102         404 RKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       404 ~~~l~~~~~a~k~~~~k~f  422 (426)
                      +...++.+++.+ +|..|.
T Consensus       729 y~k~G~~eeAle-lf~eM~  746 (1060)
T PLN03218        729 LCEGNQLPKALE-VLSEMK  746 (1060)
T ss_pred             HHHCCCHHHHHH-HHHHHH
Confidence            555555555543 444443

>KOG1915|consensus

Probab=96.74  E-value=0.041  Score=56.23  Aligned_cols=130  Identities=13%  Similarity=0.152  Sum_probs=108.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ....|...|..--.++++..|...|.+||+.                +..+..+|...|.+-++.+....|....++|+.
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv----------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt  135 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDV----------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT  135 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc----------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence            4566778888888899999999999999998                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      +-|.--+.||..-..-..+|+...|.+.|++=+++.|+-. ++...-....+. +.-+..|..|+++.
T Consensus       136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRy-keieraR~IYerfV  201 (677)
T KOG1915|consen  136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRY-KEIERARSIYERFV  201 (677)
T ss_pred             hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999754 333333333322 22345567777763

>KOG1308|consensus

Probab=96.74  E-value=0.0005  Score=67.12  Aligned_cols=80  Identities=13%  Similarity=0.209  Sum_probs=72.6

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      +..|.+++|++.|..+|.++|.....|-.+|.+++.++....|+.+|..|++++|+...-....+...+.++...++.+.
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            45677999999999999999999999999999999999999999999999999999988888888888888887776654

>KOG0545|consensus

Probab=96.72  E-value=0.012  Score=55.33  Aligned_cols=92  Identities=12%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLM--------EPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQA  386 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l--------dp~~----------~kal~~lg~a~~~lg~~~~Al~~l~kA  386 (426)
                      .+.++...|+-+++.|+|.+|...|..|+..        .|..          .-.+.+.++|++..|+|-++++.....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3567889999999999999999999998743        2333          447899999999999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         387 LDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       387 l~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      |..+|.|..++...+.+....=+..+|++.
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D  286 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKAD  286 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence            999999999999998888877676666653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.70  E-value=0.05  Score=47.05  Aligned_cols=87  Identities=20%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102         329 LLNMAAVQLKFKAYKRAINLCDDILLMEPN----------------------NVKALFRRGRAQVSMNNFEQGLQDYEQA  386 (426)
Q Consensus       329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~----------------------~~kal~~lg~a~~~lg~~~~Al~~l~kA  386 (426)
                      +...|......++...++..+.+++.+-..                      ...++..++.++...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            344455666778899999999999987421                      1557788888899999999999999999


Q ss_pred             HHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         387 LDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       387 l~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.++|-+..++..+-.++...|+..++.+
T Consensus        89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~  117 (146)
T PF03704_consen   89 LALDPYDEEAYRLLMRALAAQGRRAEALR  117 (146)
T ss_dssp             HHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999999999987764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1585|consensus

Probab=96.69  E-value=0.026  Score=53.07  Aligned_cols=173  Identities=13%  Similarity=0.111  Sum_probs=114.1

Q ss_pred             hchhhhhHhhhcc-hHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchhhCCcccccchhhhH
Q psy6102         197 YYNQGALEKKRGI-TEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDV  275 (426)
Q Consensus       197 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~~~~~P~~~i~ilk~  275 (426)
                      |-+-+.+++..+. .++++-++.+..-++..+.|++--..-..    .....+..+..++-..+..+++.|..       
T Consensus        41 fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake----~~klsEvvdl~eKAs~lY~E~Gspdt-------  109 (308)
T KOG1585|consen   41 FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE----LSKLSEVVDLYEKASELYVECGSPDT-------  109 (308)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHhCCcch-------
Confidence            3355555444443 45666678777777888877764442211    11122224455555666667888773       


Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH----
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD----  351 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~----  351 (426)
                      +-.-.+.+-...+.-+.++|+..|++++.++.....          ...-.+++...+.++.++..|.+|-..+.+    
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~  179 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA  179 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence            333445555667788899999999999998643222          334467888889999999999998776654    


Q ss_pred             HHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         352 ILLME--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       352 AL~ld--p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                      +++.+  ++-.+++...-.+|+...+|..|..+|+...++.
T Consensus       180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            33343  4445666666666777789999999999987763

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.69  E-value=0.018  Score=59.25  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=26.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQA  386 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~--~~kal~~lg~a~~~lg~~~~Al~~l~kA  386 (426)
                      ..+|.|..++|+.++|++.+...++..|.  +...++++-.++..+++|.++...+.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            34444444444444444444444444432  2334444444444444444444444443

The molecular function of this protein is uncertain.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.65  E-value=0.012  Score=64.59  Aligned_cols=142  Identities=10%  Similarity=-0.027  Sum_probs=72.9

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHH------------Hhhcccchhhhhh-------h-cCcchHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI------------KWYNQSQSKTQQK-------H-FRSYYTAALLNMAAV  335 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~------------~~~~~~~~~~~~~-------~-~~p~~~~~~~nlA~~  335 (426)
                      ...|..+...|.+.|++++|+..|.+..+.-            ..+......+.+.       + --+.+..++..+..+
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~  369 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL  369 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence            4456777777888888888888887765420            0000000000000       0 013334455556666


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      |.+.|++++|.+.+++..+   .+...|..+..+|...|+.++|++.|++.++.  .|+.. ....+-......+..+++
T Consensus       370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~~~~a  445 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-TFLAVLSACRYSGLSEQG  445 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhcCCcHHHH
Confidence            6666666666666655432   24456666666666666666666666665553  34333 233333333444555544


Q ss_pred             HHHHHHhhh
Q psy6102         414 EKMTYARMF  422 (426)
Q Consensus       414 ~k~~~~k~f  422 (426)
                      .+ .|..|.
T Consensus       446 ~~-~f~~m~  453 (697)
T PLN03081        446 WE-IFQSMS  453 (697)
T ss_pred             HH-HHHHHH
Confidence            33 444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.59  E-value=0.0099  Score=62.17  Aligned_cols=104  Identities=7%  Similarity=0.042  Sum_probs=81.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+...|..+...|+.++|++.|++|+..-.            +......-+++.+|.|++-+.+|++|.+++.+.++
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~------------~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQS------------EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK  333 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh------------hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            556678899999999999999999999986411            11334567899999999999999999999999888


Q ss_pred             hCCC-CHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHhC
Q psy6102         355 MEPN-NVKALFRRGRAQVSMNNF-------EQGLQDYEQALDLL  390 (426)
Q Consensus       355 ldp~-~~kal~~lg~a~~~lg~~-------~~Al~~l~kAl~l~  390 (426)
                      .+.- ..-..|..|.|+..+++.       ++|.+.+.++-.+-
T Consensus       334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            6653 233345668889999999       78888888776553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.028  Score=51.18  Aligned_cols=105  Identities=21%  Similarity=0.200  Sum_probs=80.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+.....++..++..+++++|+..++.++..-..             ......+-.++|.+.+++|.+++|+..++..- 
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-  153 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTKD-------------ENLKALAALRLARVQLQQKKADAALKTLDTIK-  153 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-
Confidence            4556788999999999999999999999975110             11234466789999999999999998764432 


Q ss_pred             hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         355 MEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       355 ldp~-~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                       ++. .+..--.+|.++..+|+-++|+..|++|+..+++..
T Consensus       154 -~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         154 -EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             -cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence             111 233456789999999999999999999999985543

>KOG2471|consensus

Probab=96.52  E-value=0.0046  Score=63.02  Aligned_cols=124  Identities=9%  Similarity=0.048  Sum_probs=93.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      .+..+.-..+.+|-.|+|.+|.+.....=       ..  .+..--..|.  ..-+|.|+|-++++++.|.-++.++.+|
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-------i~--~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kA  309 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSN-------IH--KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKA  309 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcc-------cc--cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence            45566677777888888777776653221       10  0111111232  2336789999999999999999999999


Q ss_pred             HH-h--------C---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         353 LL-M--------E---------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       353 L~-l--------d---------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      |+ .        .         ....+.+|+.|..|...|+.-.|.+||.+|....-.|+..|.+++.|-...
T Consensus       310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            96 1        1         234789999999999999999999999999999999999999999986643

>KOG4340|consensus

Probab=96.52  E-value=0.032  Score=53.93  Aligned_cols=84  Identities=10%  Similarity=0.063  Sum_probs=72.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy6102         287 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR  366 (426)
Q Consensus       287 f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~l  366 (426)
                      .+..+|..||++...-.+.                .|.+...+..+|.||+...+|..|..+|++...+-|...+.-+..
T Consensus        21 I~d~ry~DaI~~l~s~~Er----------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~   84 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELER----------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ   84 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            4455667777666655555                788888999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHH
Q psy6102         367 GRAQVSMNNFEQGLQDYEQA  386 (426)
Q Consensus       367 g~a~~~lg~~~~Al~~l~kA  386 (426)
                      ++.++..+.+..|+......
T Consensus        85 AQSLY~A~i~ADALrV~~~~  104 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLL  104 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHh
Confidence            99999999999999776544

>smart00028 TPR Tetratricopeptide repeats

Probab=96.51  E-value=0.0036  Score=37.85  Aligned_cols=31  Identities=39%  Similarity=0.761  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102         362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       362 al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~  392 (426)
                      +++++|.++..+++++.|+.+|+++++++|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.46  E-value=0.038  Score=62.32  Aligned_cols=127  Identities=12%  Similarity=0.039  Sum_probs=94.5

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      ....+|..++..|++++|...+.++++..+...           ......++..+|.++...|++++|...+.+++.+..
T Consensus       454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~  522 (903)
T PRK04841        454 FNALRAQVAINDGDPEEAERLAELALAELPLTW-----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR  522 (903)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            334577888999999999999999998521100           111245678899999999999999999999997643


Q ss_pred             CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         358 NN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--------DQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       358 ~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--------n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ..      ..++..+|.++...|++++|...+++++.+...        ...+...++.+....++.+++..
T Consensus       523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  594 (903)
T PRK04841        523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ  594 (903)
T ss_pred             hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            21      346788899999999999999999999986321        12334456667777777777653

>smart00028 TPR Tetratricopeptide repeats

Probab=96.35  E-value=0.0059  Score=36.81  Aligned_cols=33  Identities=33%  Similarity=0.586  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      .++.++|.++..++++++|+.+++++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            478899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.34  E-value=0.057  Score=53.96  Aligned_cols=119  Identities=17%  Similarity=0.151  Sum_probs=84.3

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +......+..+.+.|++++|.+...++++..                 -+.+++...  -.++.+++..=++..++.++.
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-----------------~D~~L~~~~--~~l~~~d~~~l~k~~e~~l~~  323 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQ-----------------WDPRLCRLI--PRLRPGDPEPLIKAAEKWLKQ  323 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----------------cChhHHHHH--hhcCCCCchHHHHHHHHHHHh
Confidence            4445556667778899999999999999861                 112222222  234677788888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .|+++..++.+|+.++..+.+.+|..+|+.|+..-|+. ..+..++.+...+++..+++
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHH
Confidence            88888888888888888888888888888888877654 34556677777776665554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.33  E-value=0.14  Score=52.90  Aligned_cols=57  Identities=12%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .-+-+++|+|...+|+.++|++.++..++..|.  +..+..+|-.++..++.+.+.++-
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence            445678999999999999999999999998875  567999999999999999988863

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.33  E-value=0.007  Score=39.54  Aligned_cols=27  Identities=37%  Similarity=0.527  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102         362 ALFRRGRAQVSMNNFEQGLQDYEQALD  388 (426)
Q Consensus       362 al~~lg~a~~~lg~~~~Al~~l~kAl~  388 (426)
                      +|.++|.+|..+|++++|+++|+++|.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            355566666666666666666666443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.32  E-value=0.081  Score=49.41  Aligned_cols=98  Identities=12%  Similarity=0.183  Sum_probs=73.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK-------RAINLCDDILLMEP  357 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~-------~Ai~~~~~AL~ldp  357 (426)
                      .+-....+++|+..|.-||-...-...         -....+.++..+|++|..+++.+       .|++.|.+|+....
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~---------~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~  156 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKE---------KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED  156 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence            666678899999999999876332211         12245789999999999999844       55555555554432


Q ss_pred             ------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         358 ------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       358 ------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                            +....+|.+|.+.+.+|++++|+..|.+++..--
T Consensus       157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence                  2367899999999999999999999999997643

>KOG3824|consensus

Probab=96.30  E-value=0.017  Score=55.90  Aligned_cols=110  Identities=12%  Similarity=0.140  Sum_probs=83.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+......+....+.|+.++|...|..|+.+                .|.++.++...|.....-++.-+|-++|-+||.
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt  178 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALAL----------------APTNPQILIEMGQFREMHNEIVEADQCYVKALT  178 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence            4445556666778899999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC-CcHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLP-NDQQILKEI  400 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P-~n~~a~~~l  400 (426)
                      ++|.|.+|+.+++...-.    -.++-+.+....+.+..-| +|......+
T Consensus       179 isP~nseALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m  229 (472)
T KOG3824|consen  179 ISPGNSEALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMM  229 (472)
T ss_pred             eCCCchHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            999999999999875322    2334444555444444333 334333333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.30  E-value=0.0079  Score=37.80  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      .+++++|.|+.++|++++|+..++++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            368899999999999999999999999999974

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.28  E-value=0.008  Score=39.25  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      +|.++|.+|.++|+|++|+++|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999976553

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.28  E-value=0.0055  Score=56.94  Aligned_cols=62  Identities=23%  Similarity=0.342  Sum_probs=57.7

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       334 ~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      ....+.++.+.|.+.|++||.+-|.+...||++|......|+++.|.+.|++.++++|.+..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            45567899999999999999999999999999999999999999999999999999998753

>KOG1915|consensus

Probab=96.27  E-value=0.053  Score=55.41  Aligned_cols=90  Identities=17%  Similarity=0.304  Sum_probs=54.9

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-hHHH
Q psy6102         334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR-HHLN  412 (426)
Q Consensus       334 ~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~-~~~~  412 (426)
                      ..-+++++++.+...|.+-|+.+|.+..+|...|..-..+|+.+.|...|+-|+...--+...+.....+--.+. ..-+
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e  524 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE  524 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence            344567777777777777777777777777777777777777777777777777653333222222222222221 2224


Q ss_pred             HHHHHHHhhhc
Q psy6102         413 LEKMTYARMFQ  423 (426)
Q Consensus       413 a~k~~~~k~f~  423 (426)
                      ..|.+|++++.
T Consensus       525 kaR~LYerlL~  535 (677)
T KOG1915|consen  525 KARALYERLLD  535 (677)
T ss_pred             HHHHHHHHHHH
Confidence            45667776654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.27  E-value=0.031  Score=52.99  Aligned_cols=75  Identities=16%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  396 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a  396 (426)
                      ...-+.-|++-|...++.|+|++|+..++.+....|-.   .++.+.++.+++..++|++|+...++-+.+.|.++.+
T Consensus        30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            34457789999999999999999999999999887644   7899999999999999999999999999999988653

>KOG2471|consensus

Probab=96.24  E-value=0.013  Score=59.95  Aligned_cols=99  Identities=12%  Similarity=0.027  Sum_probs=77.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHH-HHHhhccc-chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWYNQS-QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~-~~~~~~~~-~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ....|.++|-++|+.+.|..++.+|.+|++ .+...... .+.............+++|.|..|+..|++-.|.+++.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            344678999999999999999999999996 22222211 1111111223456679999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHc
Q psy6102         353 LLMEPNNVKALFRRGRAQVSM  373 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~l  373 (426)
                      ...--.++..|.++|.|.++.
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999987653

>KOG2396|consensus

Probab=96.20  E-value=0.12  Score=53.28  Aligned_cols=96  Identities=18%  Similarity=0.165  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy6102         295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN  374 (426)
Q Consensus       295 Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg  374 (426)
                      -...|+.|...                -+.++.+|.+...-..+.+.+.+--..|.++|...|++++.|..-|.=.+..+
T Consensus        90 Iv~lyr~at~r----------------f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n  153 (568)
T KOG2396|consen   90 IVFLYRRATNR----------------FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN  153 (568)
T ss_pred             HHHHHHHHHHh----------------cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence            34567888776                67789999999877777788999999999999999999999999998877777


Q ss_pred             C-hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         375 N-FEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       375 ~-~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      . .+.|.+.+.++|+.+|+++..+...=++...
T Consensus       154 ~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~  186 (568)
T KOG2396|consen  154 LNIESARALFLRGLRFNPDSPKLWKEYFRMELM  186 (568)
T ss_pred             cchHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence            6 8999999999999999999888766555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.17  E-value=0.044  Score=43.90  Aligned_cols=67  Identities=12%  Similarity=0.148  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHhhHH
Q psy6102         345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       345 Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n--~~a~~~l~~i~~~l~~~~  411 (426)
                      .+..++++++.+|++..+.|.+|.++...|++++|++.+-.+++.+|+.  ..+...+-.+-..++...
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4567888999999999999999999999999999999999999998765  788888888888888754

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.052  Score=51.99  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      ...+..++=..+++.++++.|..+.++.|.++|.++..+.-+|.+|..+|.+.-|+++++..++..|+++.+.....++.
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            35567777788999999999999999999999999999999999999999999999999999999999988776655554


Q ss_pred             HH
Q psy6102         405 KQ  406 (426)
Q Consensus       405 ~~  406 (426)
                      ..
T Consensus       260 ~l  261 (269)
T COG2912         260 EL  261 (269)
T ss_pred             HH
Confidence            43

>KOG3081|consensus

Probab=96.06  E-value=0.085  Score=50.30  Aligned_cols=104  Identities=12%  Similarity=0.074  Sum_probs=82.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .|.+|...+.   ..+.+..|.-.|++--+-                .+..+.++...|.|++.+++|++|...++.||.
T Consensus       175 LA~awv~la~---ggek~qdAfyifeE~s~k----------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  175 LAQAWVKLAT---GGEKIQDAFYIFEELSEK----------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             HHHHHHHHhc---cchhhhhHHHHHHHHhcc----------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4555554433   234466777777665553                567788999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCcHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQ-DYEQALDLLPNDQQIL  397 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~-~l~kAl~l~P~n~~a~  397 (426)
                      -++++++.+.++-.+-..+|.-.++.+ .+.+....+|.++-+.
T Consensus       236 kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  236 KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence            999999999999999999999877766 5667777788887543

>KOG1070|consensus

Probab=95.98  E-value=0.17  Score=57.67  Aligned_cols=126  Identities=13%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      +..+...|-+.+.+++|.++|+.-++-                -.....+|...|..+++..+-++|...+.+||+--|.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK----------------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK----------------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHH----------------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            344556666666777777777666665                2356789999999999999999999999999999987


Q ss_pred             --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         359 --NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       359 --~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                        +.+..-..|++-+..|+.+.+...|+-.+.-+|.-...|..+.......+..+ -.|.+|+|.
T Consensus      1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~-~vR~lfeRv 1660 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK-YVRDLFERV 1660 (1710)
T ss_pred             hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH-HHHHHHHHH
Confidence              89999999999999999999999999999999999888887777666544332 223444444

>KOG1585|consensus

Probab=95.95  E-value=0.29  Score=46.21  Aligned_cols=133  Identities=11%  Similarity=0.120  Sum_probs=87.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..|..-++.+-..++|++|..++.+|++.......          --.-+..|-..|.....+..+.++...+++|..
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs----------lfhAAKayEqaamLake~~klsEvvdl~eKAs~   99 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS----------LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE   99 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4555666666677778899999999888875221110          112345667777777888889999999999887


Q ss_pred             hC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HH---HHHHHHHHHHHHhhHHHHHHHH
Q psy6102         355 ME-----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQ---ILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       355 ld-----p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~---a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      +-     |+-+-.-..++-=....-+.++|+..|++++.+--.+   ..   ......+++.+++++.++...+
T Consensus       100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~  173 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF  173 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence            73     5555445555555666778899999999988764433   22   3334445555666777666543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.94  E-value=0.038  Score=45.74  Aligned_cols=95  Identities=9%  Similarity=0.119  Sum_probs=68.6

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----------AYKRAINLCD  350 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-----------~~~~Ai~~~~  350 (426)
                      .+..+|++||+-+|++..+..+.....             +.....+....|.++.++.           -.-.|++++.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~-------------~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s   68 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE-------------DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFS   68 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC-------------CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHH
Confidence            467789999999999999999987321             1111244555555554433           2456788888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      ++..+.|..+..+|.+|.=+-....|++++.-.+++|.+
T Consensus        69 ~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   69 RAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            888888888888888888877777788888887777765

>KOG2610|consensus

Probab=95.88  E-value=0.12  Score=50.90  Aligned_cols=107  Identities=10%  Similarity=-0.025  Sum_probs=55.3

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch------------------hhh----hhhcCcchHHHHHHHHHHH
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS------------------KTQ----QKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~------------------~~~----~~~~~p~~~~~~~nlA~~~  336 (426)
                      ....+...+.+|++.+|...+.+.|+-.|....+..                  .+.    ...-.|.+.-+.-.+|.++
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            334455566677777777777777765221111100                  000    0000133333444455555


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ  385 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~k  385 (426)
                      ...|-|++|.+..+++|+++|.+.-+...++.++...+++.+++++.++
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            5666666666666666666666666666666666666666666655543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.86  E-value=0.13  Score=53.96  Aligned_cols=106  Identities=8%  Similarity=0.024  Sum_probs=83.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHH
Q psy6102         289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN----NVKALF  364 (426)
Q Consensus       289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~----~~kal~  364 (426)
                      ..+...|........+.                .|...-.++..|.++...|+.++|++.+++++.....    ..-.+|
T Consensus       246 ~~~~~~a~~lL~~~~~~----------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~  309 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR----------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF  309 (468)
T ss_pred             CCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence            44566666666666666                8999999999999999999999999999999854432    345789


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHHhhH
Q psy6102         365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL-KEIAFVRKQMRHH  410 (426)
Q Consensus       365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~-~~l~~i~~~l~~~  410 (426)
                      .+|.++..+.+|++|..+|.+.++.+...+... ...+-|+..+++.
T Consensus       310 El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  310 ELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999877655443 4444555555555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10941 hypothetical protein; Provisional

Probab=95.78  E-value=0.069  Score=51.64  Aligned_cols=80  Identities=8%  Similarity=0.051  Sum_probs=72.3

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      .+.+.++-..|.+.++|+.|+.+-...+.+                .|.++.-+..||.+|.+++.+..|+.+++.-++.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----------------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQF----------------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            455667778899999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQV  371 (426)
Q Consensus       356 dp~~~kal~~lg~a~~  371 (426)
                      .|+.+.+-.-+.++..
T Consensus       245 ~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        245 CPEDPISEMIRAQIHS  260 (269)
T ss_pred             CCCchhHHHHHHHHHH
Confidence            9999998877776643

>KOG1070|consensus

Probab=95.75  E-value=0.14  Score=58.43  Aligned_cols=173  Identities=12%  Similarity=0.054  Sum_probs=115.2

Q ss_pred             CCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchh------hCCcccccchhhhHHHHHHhccchhhhhhhHH
Q psy6102         220 RGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEA------ENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMH  293 (426)
Q Consensus       220 ~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~------~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~  293 (426)
                      +..|-+.+.+.-+++.+|+.-.+|=+.+.-+=-+..|+....      ..-.+.+..+.+..-.++.++=+   .-|.-+
T Consensus      1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~ee 1514 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEE 1514 (1710)
T ss_pred             ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHH
Confidence            345556777777777777766555444321111111221111      11112222222222223333333   334455


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy6102         294 DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM  373 (426)
Q Consensus       294 ~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l  373 (426)
                      .-.+.|.+|.++++                 -..+|..|.-+|.+.+.+++|.+.++.-++---...+.|...|..++..
T Consensus      1515 sl~kVFeRAcqycd-----------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1515 SLKKVFERACQYCD-----------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred             HHHHHHHHHHHhcc-----------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence            55667777777642                 2468889999999999999999999999998888999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhHHH
Q psy6102         374 NNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLN  412 (426)
Q Consensus       374 g~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~~l~~~~~  412 (426)
                      .+-++|...+++||+.-|.  +.+.....+++.-..++.++
T Consensus      1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred             cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence            9999999999999999998  66666777777666666554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.72  E-value=0.18  Score=45.74  Aligned_cols=89  Identities=15%  Similarity=0.145  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDIL-LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFV  403 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL-~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i  403 (426)
                      .-.+.+|..+.++|++.+|...|++++ .+--+++..+..++++.+..+++..|...+++..+.+|.  .+.-...+++.
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~  169 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART  169 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence            345678999999999999999999998 467789999999999999999999999999999999885  45667788888


Q ss_pred             HHHHhhHHHHHH
Q psy6102         404 RKQMRHHLNLEK  415 (426)
Q Consensus       404 ~~~l~~~~~a~k  415 (426)
                      +...+++.+++.
T Consensus       170 laa~g~~a~Aes  181 (251)
T COG4700         170 LAAQGKYADAES  181 (251)
T ss_pred             HHhcCCchhHHH
Confidence            889998887764

>KOG4814|consensus

Probab=95.53  E-value=0.074  Score=56.11  Aligned_cols=88  Identities=11%  Similarity=0.020  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      .+++|.|.-++++.+|..++++|...++.-|.+      ++....++.||..+.+.+.|+++++.|=+.+|.++-.+...
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            477888999999999999999999999876644      78889999999999999999999999999999998877777


Q ss_pred             HHHHHHHhhHHHHH
Q psy6102         401 AFVRKQMRHHLNLE  414 (426)
Q Consensus       401 ~~i~~~l~~~~~a~  414 (426)
                      -.+-...+...+|-
T Consensus       435 ~~~~~~E~~Se~AL  448 (872)
T KOG4814|consen  435 LQSFLAEDKSEEAL  448 (872)
T ss_pred             HHHHHHhcchHHHH
Confidence            66666655555553

>PLN03077 Protein ECB2; Provisional

Probab=95.33  E-value=0.23  Score=55.92  Aligned_cols=97  Identities=8%  Similarity=0.003  Sum_probs=54.3

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CcHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLM--EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQILK  398 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l--dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P--~n~~a~~  398 (426)
                      +.+...|..+...|.+.|+.++|++.+++.++.  .|+. ..+..+-.++.+.|+.++|.+.|+...+..+  -+.....
T Consensus       551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~  629 (857)
T PLN03077        551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA  629 (857)
T ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            334555666666666666777777666665542  3433 2233344456666667777776666653321  1234555


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         399 EIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       399 ~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      .+-.++.+.|+.++|.+ .+++|
T Consensus       630 ~lv~~l~r~G~~~eA~~-~~~~m  651 (857)
T PLN03077        630 CVVDLLGRAGKLTEAYN-FINKM  651 (857)
T ss_pred             HHHHHHHhCCCHHHHHH-HHHHC
Confidence            56666666666666654 34443

>KOG0530|consensus

Probab=95.32  E-value=0.4  Score=45.78  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=95.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNVKALFRR  366 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~ldp~~~kal~~l  366 (426)
                      +...-..|+.+-..+|.+                +|.+-.+|..|=.|+..++ +..+-+++++++++-+|+|...|..|
T Consensus        55 ~~E~S~RAl~LT~d~i~l----------------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR  118 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRL----------------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR  118 (318)
T ss_pred             ccccCHHHHHHHHHHHHh----------------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence            344556677777777777                9999999999988887654 67888999999999999999999999


Q ss_pred             HHHHHHcCChH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         367 GRAQVSMNNFE-QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       367 g~a~~~lg~~~-~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      -.+...+|++. .-+++.+.++..+-+|-.++.....+.+..+.++..
T Consensus       119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E  166 (318)
T KOG0530|consen  119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE  166 (318)
T ss_pred             HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence            99999999999 899999999999999999999999999988876654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.20  E-value=0.49  Score=45.91  Aligned_cols=123  Identities=11%  Similarity=0.045  Sum_probs=87.0

Q ss_pred             cccchhhhHHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHH
Q psy6102         267 LVLNQMEDVIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA  345 (426)
Q Consensus       267 ~~~i~ilk~a~~~~~~G~~~f~~g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~A  345 (426)
                      ..+......+..+++.|...++++ +|+.|+..+++|+++++.....  .............++..++.+|+..+.++..
T Consensus        26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~--~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM--DKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc--cccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            344455668999999999999999 9999999999999997542110  0111111235677899999999998887654


Q ss_pred             HH---HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         346 IN---LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       346 i~---~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                      .+   ..+.+-.--|+.+..++-.=.++...++.+++.+.+.+.+.--+
T Consensus       104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            44   33333344577777775555555558899999999988887654

It is also involved in sporulation [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.16  E-value=0.21  Score=48.54  Aligned_cols=96  Identities=8%  Similarity=0.066  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS-MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~-lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      +|..+.....+.+..+.|...+.+|++-.+.....|...|..-+. .++.+.|...|+.+++..|.+...+...-..+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            566677777788889999999999997777889999999999666 6777779999999999999999999988888888


Q ss_pred             HhhHHHHHHHHHHhhhcC
Q psy6102         407 MRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       407 l~~~~~a~k~~~~k~f~~  424 (426)
                      +++. +..|.+|++.+..
T Consensus        83 ~~d~-~~aR~lfer~i~~   99 (280)
T PF05843_consen   83 LNDI-NNARALFERAISS   99 (280)
T ss_dssp             TT-H-HHHHHHHHHHCCT
T ss_pred             hCcH-HHHHHHHHHHHHh
Confidence            7765 4557788887654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.07  E-value=0.17  Score=45.78  Aligned_cols=103  Identities=14%  Similarity=0.253  Sum_probs=80.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .-..+..+|..|++.|+++.|++.|.++.+....             .....++++++-.+.+..+++..+..+..+|-.
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4567889999999999999999999998886321             235577889999999999999999999999876


Q ss_pred             hCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         355 MEPN--N----VKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       355 ldp~--~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                      +-..  +    .+.-...|..++..++|..|.+.|-.+..-.
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            6432  2    2234445667788899999999887775544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.79  E-value=0.048  Score=50.86  Aligned_cols=61  Identities=13%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       283 G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      +....+.++.+.|.+.|.+|+++                -|....-|+.+|....+.|+++.|.+.|.++|+++|.+
T Consensus         2 a~~~~~~~D~~aaaely~qal~l----------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           2 AYMLAESGDAEAAAELYNQALEL----------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cchhcccCChHHHHHHHHHHhhc----------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34567889999999999999999                89999999999999999999999999999999999965

>KOG4507|consensus

Probab=94.58  E-value=0.13  Score=53.79  Aligned_cols=131  Identities=15%  Similarity=0.182  Sum_probs=99.0

Q ss_pred             HHHhccchhhh-hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         278 TIKNSGNEYFK-LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       278 ~~~~~G~~~f~-~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      .+..++..|++ +|+..+|..+|..|+-..+..              ..-.++..+|-++.++|...+|--.+..|+.--
T Consensus       214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h--------------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRH--------------NKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc--------------cccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            34444444444 567889999999999884321              112467889999999999999999999999888


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH---HHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK---EIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~---~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      |....-+|.+|.++.+++++...+.+|..|.+.+|....+..   ..-.|+..+.+.-++++.-++++.
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~  348 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTL  348 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999997654333   333445555555555555555544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.55  E-value=1.6  Score=39.89  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=105.7

Q ss_pred             cHHHHHhhchhhCCcccccchhhhHHHHHHhccchhhhhhhHH---HHHHHHHHHHHHHHhhcccchhhhhhhcCcch--
Q psy6102         251 GVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMH---DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY--  325 (426)
Q Consensus       251 dvl~~I~~l~~~~~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~---~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~--  325 (426)
                      +-++.|...-.+++.+.....++-   ..--.|..|++..+-+   +|-..|.+++..+..-.. ........+...+  
T Consensus         9 qql~~ik~wwkeNGk~li~gviLg---~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~   84 (207)
T COG2976           9 QQLEAIKDWWKENGKALIVGVILG---LGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGK   84 (207)
T ss_pred             HHHHHHHHHHHHCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccc
Confidence            345556666667776664443332   2334566677666555   788889999988642222 1111111122222  


Q ss_pred             ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         326 ----TAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-N--VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       326 ----~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~-~--~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                          ...-..+|..+...+++++|+..++.+|....+ +  .-+-.|+|.+...++.+++|+..+.....- .-......
T Consensus        85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~e  163 (207)
T COG2976          85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAE  163 (207)
T ss_pred             cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHH
Confidence                234556778888999999999999999966543 3  345688999999999999999888754321 11234567


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         399 EIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       399 ~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      ..+.++...++.+++.. .|.+-.
T Consensus       164 lrGDill~kg~k~~Ar~-ay~kAl  186 (207)
T COG2976         164 LRGDILLAKGDKQEARA-AYEKAL  186 (207)
T ss_pred             HhhhHHHHcCchHHHHH-HHHHHH
Confidence            77888888888776643 555543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.54  E-value=0.15  Score=39.57  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+....+.|..+|...+.++|+..++++++....             .+....++-.+..+|...|+|.+++++...-+.
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778899999999999999999999997432             345667777888899999999999998776665


Q ss_pred             h
Q psy6102         355 M  355 (426)
Q Consensus       355 l  355 (426)
                      +
T Consensus        72 ~   72 (80)
T PF10579_consen   72 I   72 (80)
T ss_pred             H
Confidence            4

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.52  E-value=0.3  Score=45.65  Aligned_cols=92  Identities=12%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      ....++.|+.+..+++......=+..|+..|.+|++.-+.          ....-....+++.+|.++.++|++++|+.+
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~----------~~~~~~~~~l~YLigeL~rrlg~~~eA~~~  187 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF----------PIEGMDEATLLYLIGELNRRLGNYDEAKRW  187 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC----------CCCCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4445566777777777777777777788888888775211          011224467899999999999999999999


Q ss_pred             HHHHHHhCCCCH-HHHHHHHHHH
Q psy6102         349 CDDILLMEPNNV-KALFRRGRAQ  370 (426)
Q Consensus       349 ~~~AL~ldp~~~-kal~~lg~a~  370 (426)
                      +.+++.....+. ..+..+|.=+
T Consensus       188 fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  188 FSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             HHHHHcCCCCCCcHHHHHHHHHH
Confidence            999997654333 4555555533

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.31  E-value=0.2  Score=40.18  Aligned_cols=64  Identities=23%  Similarity=0.335  Sum_probs=45.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+.++|..|++.+.+..+..........       ......++.++|.++...|++++|+..+++|+++-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS-------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45789999999999999987433221000       11235567788888888888888888888888664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.28  E-value=0.1  Score=34.35  Aligned_cols=29  Identities=28%  Similarity=0.358  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      .++.++|.+|..+|++++|+.++.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45666777777777777777777766654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.13  E-value=1.2  Score=45.02  Aligned_cols=108  Identities=19%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM------------  355 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l------------  355 (426)
                      ....|.++...|..|+...+...    ........|..++.+..++.++.++|+++.|.+.+++||=.            
T Consensus         6 hs~~Y~~~q~~F~~~v~~~Dp~~----l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~   81 (360)
T PF04910_consen    6 HSKAYQEAQEQFYAAVQSHDPNA----LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF   81 (360)
T ss_pred             CCHHHHHHHHHHHHHHHccCHHH----HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            35678888888888887642211    22333458999999999999999999999999999998722            


Q ss_pred             --CCC------------C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHH
Q psy6102         356 --EPN------------N---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKE  399 (426)
Q Consensus       356 --dp~------------~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-n~~a~~~  399 (426)
                        ++.            |   ..++++....+...|.+.-|++..+-.+.+||. |+-....
T Consensus        82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll  143 (360)
T PF04910_consen   82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL  143 (360)
T ss_pred             hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence              111            1   558999999999999999999999999999998 7754333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.96  E-value=0.72  Score=36.84  Aligned_cols=38  Identities=13%  Similarity=0.111  Sum_probs=33.8

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      +|.+..+.+.+|.+++..|++++|++.+-.+++.++++
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999877

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.92  E-value=1.5  Score=44.88  Aligned_cols=72  Identities=15%  Similarity=0.246  Sum_probs=57.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHh
Q psy6102         333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----DQQILKEIAFVRKQMR  408 (426)
Q Consensus       333 A~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~----n~~a~~~l~~i~~~l~  408 (426)
                      |..++..|+|.+|.-++.=..++.| .+.++.-+|.|++...+|++|..++...   -|+    |..+++.+..|.+.+-
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~~  544 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHLP  544 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhhh
Confidence            4556789999999999999999999 9999999999999999999999998743   332    2345566666655443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.91  E-value=0.97  Score=44.64  Aligned_cols=127  Identities=13%  Similarity=0.076  Sum_probs=101.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+...+..+.+.|.++.|.....++....+..            ....+.+....|..+...|+..+|+..++..+
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~------------~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~  211 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS------------ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL  211 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc------------cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            356778999999999999999999999888752110            12257788889999999999999999998888


Q ss_pred             Hh--CC--------------------------------CCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCc
Q psy6102         354 LM--EP--------------------------------NNVKALFRRGRAQVSM------NNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       354 ~l--dp--------------------------------~~~kal~~lg~a~~~l------g~~~~Al~~l~kAl~l~P~n  393 (426)
                      ..  ..                                ..+++++.+|.-...+      +..++++..|+.|.+++|..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  291 (352)
T PF02259_consen  212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW  291 (352)
T ss_pred             HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence            71  11                                1156778888877777      89999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhHHH
Q psy6102         394 QQILKEIAFVRKQMRHHLN  412 (426)
Q Consensus       394 ~~a~~~l~~i~~~l~~~~~  412 (426)
                      ..++..++.....+-....
T Consensus       292 ~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  292 EKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999988888877654443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.85  E-value=3.2  Score=36.86  Aligned_cols=113  Identities=10%  Similarity=-0.010  Sum_probs=81.6

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...+.+......+.++.+.+...+.-.--+                .|..+.+-..-|..++..|+|.+|+..++.+..-
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL----------------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVL----------------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            344555566666666777777666533333                8999999999999999999999999999999888


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      .|..+-+---++.|+..+++.+-=. +-+.+++.. .++.+....+.+..+
T Consensus        74 ~~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~-~d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   74 APGFPYAKALLALCLYALGDPSWRR-YADEVLESG-ADPDARALVRALLAR  122 (160)
T ss_pred             CCCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcC-CChHHHHHHHHHHHh
Confidence            8988888888899999999865422 123344443 366666666655554

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.80  E-value=0.15  Score=49.67  Aligned_cols=82  Identities=18%  Similarity=0.110  Sum_probs=72.9

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR-RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~-lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      -+.++.+|...+..-.+.|.|.+.-..|.++|+..|.|++.|.. -+.-+...++++.|...|+++|+++|+++.+|...
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey  182 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY  182 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence            58889999999999999999999999999999999999999987 44457788999999999999999999999887655


Q ss_pred             HHH
Q psy6102         401 AFV  403 (426)
Q Consensus       401 ~~i  403 (426)
                      =++
T Consensus       183 fr~  185 (435)
T COG5191         183 FRM  185 (435)
T ss_pred             HHH
Confidence            444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.66  E-value=1.1  Score=39.84  Aligned_cols=86  Identities=13%  Similarity=0.161  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      -...+..+..+-++.++.+++...+...--+.|..++.-.--|..+...|++.+|+..|+.+..-.|..+.+...+..|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            35667778888889999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhH
Q psy6102         405 KQMRHH  410 (426)
Q Consensus       405 ~~l~~~  410 (426)
                      ..+++.
T Consensus        89 ~~~~D~   94 (160)
T PF09613_consen   89 YALGDP   94 (160)
T ss_pred             HHcCCh
Confidence            887754

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.44  E-value=2.4  Score=41.13  Aligned_cols=119  Identities=12%  Similarity=0.043  Sum_probs=80.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLM----EP---  357 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~l----dp---  357 (426)
                      ..++|+++.|..+|.|+=..... .   +....    ..-...+++.|...+..+ +++.|+.++++|+++    .+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~-~---~~~~~----~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~   74 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNS-L---DPDMA----EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK   74 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhc-C---CcHHH----HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence            46789999999999999887421 1   11111    233679999999999999 999999999999988    22   


Q ss_pred             C-------CHHHHHHHHHHHHHcCChHHHH---HHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHH
Q psy6102         358 N-------NVKALFRRGRAQVSMNNFEQGL---QDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  412 (426)
Q Consensus       358 ~-------~~kal~~lg~a~~~lg~~~~Al---~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~  412 (426)
                      .       ....+..++.+|...+.++...   ..++.+-.-.|+.+......-.+.......++
T Consensus        75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~  139 (278)
T PF08631_consen   75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEE  139 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhH
Confidence            1       1557888899999888776544   44444444567777666333333333333333

It is also involved in sporulation [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.39  E-value=0.19  Score=33.00  Aligned_cols=30  Identities=27%  Similarity=0.354  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999886

>KOG1310|consensus

Probab=93.39  E-value=0.25  Score=51.24  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l---g~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      ++-+..-|.=.+.......|+..|.+++..-|.....|-+++.+++..   |+.-.|+.+...|++++|....++..|.+
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            333334444444556788999999999999999999999999998775   78888999999999999999999999999


Q ss_pred             HHHHHhhHHHHH
Q psy6102         403 VRKQMRHHLNLE  414 (426)
Q Consensus       403 i~~~l~~~~~a~  414 (426)
                      ++..+++..++.
T Consensus       454 aL~el~r~~eal  465 (758)
T KOG1310|consen  454 ALNELTRYLEAL  465 (758)
T ss_pred             HHHHHhhHHHhh
Confidence            999999998875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.38  E-value=0.92  Score=36.32  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPN---------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~---------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                      -.++.++|.+|++.+.+.++....         ..-+++++|.++...|++++|+..++.|+++-.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            456899999999998888866421         246889999999999999999999999999854

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.36  E-value=0.61  Score=46.08  Aligned_cols=118  Identities=15%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHH-HHHhhcccch-----------------hhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWYNQSQS-----------------KTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~-~~~~~~~~~~-----------------~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      .+....+.+..++..|+..+|+......+. .+........                 .............++..+|.-.
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            345567778888888999999999998888 3322210000                 0001112344567888888877


Q ss_pred             HHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-----------------HHHHHHHHHHHHhCCC
Q psy6102         337 LKF------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF-----------------EQGLQDYEQALDLLPN  392 (426)
Q Consensus       337 ~~l------g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~-----------------~~Al~~l~kAl~l~P~  392 (426)
                      ..+      +..++++..|.+|+.++|...++|+..|..+..+=+.                 ..|+.+|-+|+.+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            778      8999999999999999999999999999987655221                 3488888889888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2610|consensus

Probab=93.10  E-value=0.46  Score=46.85  Aligned_cols=97  Identities=12%  Similarity=0.068  Sum_probs=71.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---H
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM-EPNN---V  360 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l-dp~~---~  360 (426)
                      -+...|-|++|.+.-.+|+++                ++.+.-+....|.++.-.+++.++.+...+.-.. +...   .
T Consensus       184 gL~E~g~y~dAEk~A~ralqi----------------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas  247 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQI----------------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS  247 (491)
T ss_pred             hHHHhccchhHHHHHHhhccC----------------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh
Confidence            344566777777777777777                9999999999999999999999999876544321 1122   3


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH--HhCCCcHHHH
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQAL--DLLPNDQQIL  397 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl--~l~P~n~~a~  397 (426)
                      --|..-|.++..-+.|+.|++.|.+-+  ++..+|..++
T Consensus       248 HNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da~a~  286 (491)
T KOG2610|consen  248 HNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDAVAR  286 (491)
T ss_pred             hhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccchhhh
Confidence            346677888888999999999987654  4555666443

>KOG2300|consensus

Probab=92.99  E-value=2.3  Score=44.03  Aligned_cols=132  Identities=15%  Similarity=0.127  Sum_probs=93.8

Q ss_pred             CcccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH
Q psy6102         264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK  343 (426)
Q Consensus       264 ~~P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~  343 (426)
                      ..|.........+...+-+|.-...-+.|+.|...|..|.+....             ....+.+-.|+|..|++.++-+
T Consensus       355 r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-------------~dl~a~~nlnlAi~YL~~~~~e  421 (629)
T KOG2300|consen  355 RFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-------------IDLQAFCNLNLAISYLRIGDAE  421 (629)
T ss_pred             hCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-------------HHHHHHHHHhHHHHHHHhccHH
Confidence            334333444456777888888888899999999999999987432             2335667889999999977754


Q ss_pred             HHHHHHHHHH-HhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--------HHHHHHHHH
Q psy6102         344 RAINLCDDIL-LMEPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--------ILKEIAFVR  404 (426)
Q Consensus       344 ~Ai~~~~~AL-~ldp~~----------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~--------a~~~l~~i~  404 (426)
                      .    +.+++ .+.|.|          ..++|..|.-.+.++++.+|...+.+.|+..  |.+        .+..++.+-
T Consensus       422 d----~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~  495 (629)
T KOG2300|consen  422 D----LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVF  495 (629)
T ss_pred             H----HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHH
Confidence            3    33334 344543          5578999999999999999999999999885  322        334455555


Q ss_pred             HHHhhHHHHH
Q psy6102         405 KQMRHHLNLE  414 (426)
Q Consensus       405 ~~l~~~~~a~  414 (426)
                      ..+++..++.
T Consensus       496 lslgn~~es~  505 (629)
T KOG2300|consen  496 LSLGNTVESR  505 (629)
T ss_pred             HHhcchHHHH
Confidence            5566666554

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.55  E-value=1.6  Score=45.97  Aligned_cols=106  Identities=18%  Similarity=0.061  Sum_probs=86.1

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCH
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC-DDILLMEPNNV  360 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~-~~AL~ldp~~~  360 (426)
                      +...+...++...|......++..                +|.+..++.++|.+....|....++... ..+....|++.
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~  136 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSV----------------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA  136 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhc----------------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence            455555666666777777777777                9999999999999998887766665554 55999999999


Q ss_pred             HHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         361 KALFRR------GRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       361 kal~~l------g~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      ..+..+      |..+..+++..++...++++..+.|+++.+...+-..
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         137 EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            988777      8889999999999999999999999997766655544

>KOG3617|consensus

Probab=92.49  E-value=2  Score=47.03  Aligned_cols=90  Identities=16%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDI----------LLMEPN----------NVKALFRRGRAQVSMNNFEQGLQDYEQ  385 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~A----------L~ldp~----------~~kal~~lg~a~~~lg~~~~Al~~l~k  385 (426)
                      -..|++.|.-+...++.+.|+++|+++          |.-+|.          +...|..-|+-+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            457899999999999999999999875          333443          345667778888999999999999998


Q ss_pred             HHHh---------------------CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         386 ALDL---------------------LPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       386 Al~l---------------------~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      |-..                     ...|..+-..+++.+...++..++.+
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~  988 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK  988 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence            8552                     35677788888888888888877754

>KOG0882|consensus

Probab=92.36  E-value=0.069  Score=54.02  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             eEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCc
Q psy6102          26 RMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGE   90 (426)
Q Consensus        26 ~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (426)
                      -|.|+++.+-.|.-++-|..+|.          .+|+++.+|.||++-+.+|.||.......+|.
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm  167 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQ----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM  167 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCc----------cceecccccCceEEEEeeccccceeeccccce
Confidence            89999999999999999999994          68899999999999999999998755555543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.30  E-value=0.85  Score=44.26  Aligned_cols=68  Identities=15%  Similarity=0.211  Sum_probs=63.8

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      ......++..++..+...++++.+++.+++.+.++|-+-.+|.++=.+|+..|+...|+..|++.-++
T Consensus       149 ~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         149 EELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999998774

>KOG2053|consensus

Probab=92.30  E-value=1.1  Score=49.15  Aligned_cols=110  Identities=13%  Similarity=0.089  Sum_probs=83.8

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      ..-.|..+++.|.+++|..+.+ ++..               ..+.+...+--+-.||..++++++|...|++++..+|+
T Consensus        46 ~vLkaLsl~r~gk~~ea~~~Le-~~~~---------------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   46 KVLKALSLFRLGKGDEALKLLE-ALYG---------------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHHHhcCchhHHHHHh-hhcc---------------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            3445677889999999984443 3332               15667788888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       359 ~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                       .+.++.+=+||.+.+.|.+=.+.--+..+..|+++-.....-.+..
T Consensus       110 -eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen  110 -EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence             9999999999999988877555444455577888765554444443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.18  E-value=3.2  Score=40.07  Aligned_cols=107  Identities=17%  Similarity=0.164  Sum_probs=80.4

Q ss_pred             HHHHhccchhhh----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch-HHHHHHHHHHHHHcc-------CHHH
Q psy6102         277 RTIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFK-------AYKR  344 (426)
Q Consensus       277 ~~~~~~G~~~f~----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-~~~~~nlA~~~~~lg-------~~~~  344 (426)
                      ...+.+|..+..    ..|+.+|...|.+|.+.                .... ..+.+.++.+|..-.       +...
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~  173 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKK  173 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----------------CChhHHHHHHHHHHHHHcChhhhcccHHHHh
Confidence            345556666665    55999999999999986                2222 345788888887641       3347


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         345 AINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       345 Ai~~~~~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      |+..|.++....  ++.+.+++|.+|..    ..++.+|+..|.+|.+...  ..+...+..+
T Consensus       174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~  232 (292)
T COG0790         174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM  232 (292)
T ss_pred             HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence            899998888777  89999999988855    3588999999999999876  7777777733

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.17  E-value=1.9  Score=35.73  Aligned_cols=88  Identities=13%  Similarity=0.100  Sum_probs=69.0

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCcHHHH
Q psy6102         332 MAAVQLKFKAYKRAINLCDDILLMEPNNV---KALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       332 lA~~~~~lg~~~~Ai~~~~~AL~ldp~~~---kal~~lg~a~~~lg~-----------~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      +|.-+++.|++-+|++..+..+...+++.   -.+..-|.++..+..           +-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57788999999999999999998887765   456666887766533           3459999999999999998888


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHH
Q psy6102         398 KEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       398 ~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      ..++.-.....-+++..++.-+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~  103 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKR  103 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH
Confidence            8888776666677766655433

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.13  E-value=0.48  Score=31.02  Aligned_cols=33  Identities=9%  Similarity=0.118  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHH--HHHHHHhCCCc
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQD--YEQALDLLPND  393 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~--l~kAl~l~P~n  393 (426)
                      +.++.+|..+..+|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566666777777777777777  33666666554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG3617|consensus

Probab=91.94  E-value=1.9  Score=47.33  Aligned_cols=114  Identities=11%  Similarity=0.021  Sum_probs=80.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHH----HhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI----KWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~----~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      -..|++.+..+-..+|.+.|+++|.++=...    .-..+.....+..-....+..+|..-|..+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3457777877888888888888888763211    000000001111111344557888889989999999999999988


Q ss_pred             HHHh---------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         352 ILLM---------------------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       352 AL~l---------------------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      |-..                     ...+-.|-|.+|..|...|++.+|+.+|.+|..+
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            7543                     2456778999999999999999999999988554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.93  E-value=1.3  Score=50.11  Aligned_cols=122  Identities=9%  Similarity=0.060  Sum_probs=87.8

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-------CHHHHHHHHHH
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-------AYKRAINLCDD  351 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-------~~~~Ai~~~~~  351 (426)
                      +....+++...+.|+.|+..|.+.-.-.|.             ...--++.+..|.+.+..-       .+.+|+..+++
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPG-------------RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY  544 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCC-------------cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            455667777888899999999887766332             1233456777777776532       35555555543


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                       |.-.|.-+--|...|.+|..+|+|++-+++|..|++..|+++++-.....+--++.+.-...
T Consensus       545 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (932)
T PRK13184        545 -LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH  606 (932)
T ss_pred             -hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence             23346667788888999999999999999999999999999988877777766665554333

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.88  E-value=6.5  Score=38.98  Aligned_cols=84  Identities=15%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             CcchHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         322 RSYYTAALLNMAAVQLKFKA------------YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~------------~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      +|.++.+|..+....-.+-.            .+..+..|++||+.+|++.+.+..+=.+....-+-++..+-+++++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~   94 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK   94 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            89999999999877666543            456788999999999999999998888888899999999999999999


Q ss_pred             CCCcHHHHHHHHHHHH
Q psy6102         390 LPNDQQILKEIAFVRK  405 (426)
Q Consensus       390 ~P~n~~a~~~l~~i~~  405 (426)
                      +|++...|...-....
T Consensus        95 ~~~~~~LW~~yL~~~q  110 (321)
T PF08424_consen   95 NPGSPELWREYLDFRQ  110 (321)
T ss_pred             CCCChHHHHHHHHHHH
Confidence            9999888766544433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.79  E-value=0.26  Score=32.68  Aligned_cols=29  Identities=34%  Similarity=0.580  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      ++|..+|.+-+..++|++|+.+|++||++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777788888888888888888888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.72  E-value=2.9  Score=40.69  Aligned_cols=91  Identities=15%  Similarity=0.096  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----------------------
Q psy6102         329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-----------------------  385 (426)
Q Consensus       329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~k-----------------------  385 (426)
                      -+.-+.-.+..+++.+|...+..++..+|.+.++...++.||...|+.+.|...+..                       
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            344556677899999999999999999999999999999999999999776655543                       


Q ss_pred             -----------HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         386 -----------ALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       386 -----------Al~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                                 .+..+|+|.++...++..+...++.+++--+++.
T Consensus       217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~  261 (304)
T COG3118         217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA  261 (304)
T ss_pred             hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                       2224688888888888888888888877655544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.63  E-value=4  Score=41.33  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=73.1

Q ss_pred             HHhccchhhh---hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH---------ccCHHHHH
Q psy6102         279 IKNSGNEYFK---LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK---------FKAYKRAI  346 (426)
Q Consensus       279 ~~~~G~~~f~---~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~---------lg~~~~Ai  346 (426)
                      ....|..+-+   .|+.++|+..+..++...               .+.+++.+.-.|.+|-.         ....++|+
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~---------------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi  246 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESD---------------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAI  246 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---------------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence            3344444555   889999999998876541               56677788888877743         23578899


Q ss_pred             HHHHHHHHhCCCC---------------------------------------------HHHHHHHHHHHHHcCChHHHHH
Q psy6102         347 NLCDDILLMEPNN---------------------------------------------VKALFRRGRAQVSMNNFEQGLQ  381 (426)
Q Consensus       347 ~~~~~AL~ldp~~---------------------------------------------~kal~~lg~a~~~lg~~~~Al~  381 (426)
                      .+|.++.+++|+.                                             ...+-.++.+....|++++|++
T Consensus       247 ~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~  326 (374)
T PF13281_consen  247 EWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQ  326 (374)
T ss_pred             HHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999988653                                             1123344556666777788888


Q ss_pred             HHHHHHHhCCCcHHHHHHHHH
Q psy6102         382 DYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       382 ~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      .+++++++.|..-.....++.
T Consensus       327 a~e~~~~l~~~~W~l~St~~n  347 (374)
T PF13281_consen  327 AAEKAFKLKPPAWELESTLEN  347 (374)
T ss_pred             HHHHHhhcCCcchhHHHHHHH
Confidence            888877777665444333333

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.57  E-value=0.72  Score=44.32  Aligned_cols=79  Identities=11%  Similarity=0.073  Sum_probs=69.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      .......=..+.+.++|+.|..+-.+.+.+                +|.++.-+.-+|.+|.++|.+.-|+++++..++.
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l----------------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~  244 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDL----------------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH  244 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhh----------------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence            334445556778889999999999999998                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQ  370 (426)
Q Consensus       356 dp~~~kal~~lg~a~  370 (426)
                      .|+.+.+-.-+++..
T Consensus       245 ~P~~~~a~~ir~~l~  259 (269)
T COG2912         245 CPDDPIAEMIRAQLL  259 (269)
T ss_pred             CCCchHHHHHHHHHH
Confidence            999998887776654

>KOG0529|consensus

Probab=91.13  E-value=2.8  Score=42.48  Aligned_cols=101  Identities=12%  Similarity=0.105  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102         291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YKRAINLCDDILLMEPNNVKALFRRGR  368 (426)
Q Consensus       291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~--~~~Ai~~~~~AL~ldp~~~kal~~lg~  368 (426)
                      -+++-+.+-..||+.                +|..-.+|+.|..++.+...  +..=++.|+++|++||.|..+|-.|=.
T Consensus        90 ~ld~eL~~~~~~L~~----------------npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf  153 (421)
T KOG0529|consen   90 LLDEELKYVESALKV----------------NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF  153 (421)
T ss_pred             hhHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH
Confidence            566677777888888                99999999999999998764  688899999999999999999877766


Q ss_pred             HHHHcCC----hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         369 AQVSMNN----FEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       369 a~~~lg~----~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      +......    ..+-+++..+++.-++.|-.++.....+...+
T Consensus       154 V~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  154 VVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            6544433    57788899999999999999999888877743

>KOG1550|consensus

Probab=90.91  E-value=2.2  Score=45.61  Aligned_cols=105  Identities=15%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             HHhccchhhhh----h-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHH
Q psy6102         279 IKNSGNEYFKL----N-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCD  350 (426)
Q Consensus       279 ~~~~G~~~f~~----g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~  350 (426)
                      .+.+|..|.+.    . ++..|+.+|.+|.+.                  .++.+.+.+|.|+..-.   ++..|.++|.
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~  352 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYS  352 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------------------CCchHHHHHHHHHHcCCccccHHHHHHHHH
Confidence            45566666663    2 889999999999876                  55778889999998655   6789999998


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         351 DILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       351 ~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      .|.+.  .+..|.+++|.||..    .-+...|..+|.+|.+..  ++.+...+..+..
T Consensus       353 ~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~  407 (552)
T KOG1550|consen  353 LAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE  407 (552)
T ss_pred             HHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence            88754  589999999999865    367889999999999987  4555555554444

>KOG3364|consensus

Probab=90.74  E-value=0.68  Score=39.81  Aligned_cols=46  Identities=26%  Similarity=0.389  Sum_probs=39.3

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  368 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~  368 (426)
                      ...-.+.+.+|..++++++|+.|+.+++..|+.+|+|..|.--.-.
T Consensus        68 ~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   68 ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            4556788899999999999999999999999999999887654433

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=90.70  E-value=1.2  Score=37.69  Aligned_cols=80  Identities=11%  Similarity=0.052  Sum_probs=60.2

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH----HH
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI----LL  354 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A----L~  354 (426)
                      +..+|+.+++.+++-.||-+|++|+.+......... .+..++-...+-.+.|+|.-+..+|+.+-.+++++-|    +.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~-~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNE-IELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            456889999999999999999999999766532211 2222223455668899999999999999999998655    56


Q ss_pred             hCCCC
Q psy6102         355 MEPNN  359 (426)
Q Consensus       355 ldp~~  359 (426)
                      |-|..
T Consensus        83 LiPQC   87 (140)
T PF10952_consen   83 LIPQC   87 (140)
T ss_pred             hccCC
Confidence            66654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.58  E-value=0.63  Score=35.83  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhc
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  310 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~  310 (426)
                      ..+..+...+..+=+.|++.+|+.+|++||+++-...
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~   40 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV   40 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            4677788889999999999999999999999865443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2047|consensus

Probab=90.49  E-value=5.6  Score=42.63  Aligned_cols=30  Identities=17%  Similarity=0.114  Sum_probs=23.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRY  305 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~  305 (426)
                      -..|...|..|...|+.+.|...|.+|+..
T Consensus       387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  387 GTLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             hhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence            355777888888888888888888888764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.24  E-value=6.7  Score=35.36  Aligned_cols=98  Identities=11%  Similarity=0.063  Sum_probs=71.7

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN---NVKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PNDQQIL  397 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~---~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~--P~n~~a~  397 (426)
                      ..--.++..+|.-|.+.|++++|++.|.++.+....   -.+.++++-.+....+++.....++.+|-.+-  +.+.+..
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            344568899999999999999999999998876532   36788899999999999999999999997763  2333333


Q ss_pred             HH----HHHHHHHHhhHHHHHHHHHHh
Q psy6102         398 KE----IAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       398 ~~----l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      ..    .+......+++.++.+....-
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence            22    223333456667766655443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.93  E-value=2.7  Score=44.45  Aligned_cols=97  Identities=16%  Similarity=0.045  Sum_probs=76.6

Q ss_pred             CcchHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCcHHHHH
Q psy6102         322 RSYYTAALLN--MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQILK  398 (426)
Q Consensus       322 ~p~~~~~~~n--lA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~k-Al~l~P~n~~a~~  398 (426)
                      ++.+..++..  ++..+..++....+.-....++..+|.+..++.++|.++...|....++..+.. |....|+|.++..
T Consensus        61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            5555555333  588888899999999999999999999999999999999888877777776555 9999999998887


Q ss_pred             HH------HHHHHHHhhHHHHHHHHH
Q psy6102         399 EI------AFVRKQMRHHLNLEKMTY  418 (426)
Q Consensus       399 ~l------~~i~~~l~~~~~a~k~~~  418 (426)
                      .+      ++....+++..++.....
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~l~  166 (620)
T COG3914         141 HLIRFYQLGRYLKLLGRTAEAELALE  166 (620)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            77      666666666666654443

>KOG1550|consensus

Probab=89.83  E-value=2.9  Score=44.82  Aligned_cols=116  Identities=15%  Similarity=0.130  Sum_probs=85.6

Q ss_pred             HHHHHhccchhhh-----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-----CHHHH
Q psy6102         276 IRTIKNSGNEYFK-----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----AYKRA  345 (426)
Q Consensus       276 a~~~~~~G~~~f~-----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-----~~~~A  345 (426)
                      +.....+|.+++.     .+|.+.|+.+|..|...+...        +   .-.++.+.+.+|.+|++-.     ++..|
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~--------a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A  312 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA--------A---TKGLPPAQYGLGRLYLQGLGVEKIDYEKA  312 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH--------H---hhcCCccccHHHHHHhcCCCCccccHHHH
Confidence            4445555555554     479999999999998731100        0   1124558889999999843     78889


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         346 INLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       346 i~~~~~AL~ldp~~~kal~~lg~a~~~lg---~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      +.++.++-.+.  ++.+.+.+|.++..-.   ++..|.++|..|...  .+..+...++.|+..
T Consensus       313 ~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  313 LKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             HHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            99998888765  7788999999987765   678999999999765  677788888887764

>KOG2047|consensus

Probab=89.72  E-value=6  Score=42.44  Aligned_cols=151  Identities=10%  Similarity=0.113  Sum_probs=106.2

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch---hhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS---KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~---~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      +.+.+..|.+-|..-.+.++++.|+.+..+|... |.......   .+...-.--....+|...+...-..|-++.....
T Consensus       421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v  499 (835)
T KOG2047|consen  421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV  499 (835)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence            3456788899999999999999999999998864 21111000   0000000123466888888888889999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHH--HHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILK--EIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~--~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      |++.|+|--..+....+.|..+..-..+++|.+.|++.+.|.|-  -.++|.  .-..+.+--+..-+..|.+|.+-++
T Consensus       500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~  578 (835)
T KOG2047|consen  500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD  578 (835)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999888653  333332  2233333334445666777766544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.71  E-value=0.56  Score=31.13  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      .+|..+|.+.+..++|++|+.+|.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.58  E-value=1.2  Score=43.31  Aligned_cols=66  Identities=17%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL  387 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl  387 (426)
                      ...+..++.--|..|+..|.+.+|++.+++++.++|-+...+.-+-.+|..+||--.|+..|++.-
T Consensus       275 e~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         275 EQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            344566777778899999999999999999999999999999999999999999888888887653

>KOG0529|consensus

Probab=89.54  E-value=6.5  Score=39.94  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             CcchHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKF------------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN--FEQGLQDYEQAL  387 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~l------------g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~--~~~Al~~l~kAl  387 (426)
                      +|....+|.-+=.++...            .-.++-+.....+|+.+|+..-+|+.|..++.....  +..-++.+++++
T Consensus        59 npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L  138 (421)
T KOG0529|consen   59 NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKAL  138 (421)
T ss_pred             CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            566666666555544332            246677788889999999999999999999998765  578889999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         388 DLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       388 ~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      ++||.|-.++.....+.......
T Consensus       139 ~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  139 KQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             hcCcccccchHHHHHHHHHHhcc
Confidence            99999999999988888776655

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.48  E-value=2.4  Score=43.07  Aligned_cols=55  Identities=11%  Similarity=0.077  Sum_probs=50.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102         364 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY  418 (426)
Q Consensus       364 ~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~  418 (426)
                      -.+..||+.+++.+.|+..-.+.+-++|.+..-....+.|-+.+.++.+|.|.+.
T Consensus       232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999987654

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.45  E-value=1.2  Score=42.54  Aligned_cols=62  Identities=8%  Similarity=-0.021  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       345 Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      |+.+|.+|+.+.|++...|..+|.+....++.-.|+=+|-+++...--.+.+..++..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997655558888888888776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.41  E-value=5.3  Score=35.03  Aligned_cols=74  Identities=12%  Similarity=0.070  Sum_probs=33.6

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +-+...+.+++...+...--+-|+.++.-.--|..+...|++++|+..|+...+-.|..+.+...+..|+..++
T Consensus        19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.15  E-value=1.7  Score=28.46  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHH--HHHHHHhCCCC
Q psy6102         327 AALLNMAAVQLKFKAYKRAINL--CDDILLMEPNN  359 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~--~~~AL~ldp~~  359 (426)
                      +.++.+|..+...|++++|+..  |.-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4678889999999999999999  54888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.85  E-value=5.6  Score=41.26  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=74.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  365 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~  365 (426)
                      ....|+...|-.....+++.                .|..+.....++.+...+|+|+.|.+++.-+=+.-..-.++.--
T Consensus       299 ~~~~gd~~aas~~~~~~lr~----------------~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~  362 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRN----------------QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRC  362 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHh----------------CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHH
Confidence            44567777888777778877                77888888888999999999999998887776665666666666


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH
Q psy6102         366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  399 (426)
Q Consensus       366 lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~  399 (426)
                      +-..+..++++++|+..-+-.|.-+-+++++..-
T Consensus       363 ~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~i  396 (831)
T PRK15180        363 RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTV  396 (831)
T ss_pred             HHHhhhchhhHHHHHHHHHHHhccccCChhheee
Confidence            6677788888888888777777666666655443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.63  E-value=15  Score=37.07  Aligned_cols=136  Identities=12%  Similarity=0.091  Sum_probs=85.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc-c-----h-------hhhhhhcCcchHHHHHHHHHHHHHccC
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-Q-----S-------KTQQKHFRSYYTAALLNMAAVQLKFKA  341 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~-~-----~-------~~~~~~~~p~~~~~~~nlA~~~~~lg~  341 (426)
                      .+..+.+++.++..+|++..|-+..++||-.++..-.. .     .       ..-....+-....+++.....+.+.|.
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~  118 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC  118 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence            45677888888888888888888888888654311110 0     0       011111123334566677788889999


Q ss_pred             HHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhH
Q psy6102         342 YKRAINLCDDILLMEPN-NVK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-----DQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       342 ~~~Ai~~~~~AL~ldp~-~~k-al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-----n~~a~~~l~~i~~~l~~~  410 (426)
                      +..|+++|+-.+.+||. ++- +++.+=....+.++|+--++.++........     -+........++..+++.
T Consensus       119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~  194 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE  194 (360)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence            99999999999999998 654 4445555556668888777777765542111     123344444555555554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.58  E-value=8.9  Score=36.94  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=76.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HH
Q psy6102         287 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNN-VK  361 (426)
Q Consensus       287 f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----lg~~~~Ai~~~~~AL~ldp~~-~k  361 (426)
                      ....++.+|+..|..+.                  ....+.+.+++|.+|..    ..++.+|..+|.+|.+..-.. ..
T Consensus        88 gv~~~~~~A~~~~~~~a------------------~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~  149 (292)
T COG0790          88 GVSRDKTKAADWYRCAA------------------ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAAL  149 (292)
T ss_pred             CccccHHHHHHHHHHHh------------------hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHH
Confidence            33456888888888555                  45667889999999987    559999999999999886544 46


Q ss_pred             HHHHHHHHHHHcC-------ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         362 ALFRRGRAQVSMN-------NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       362 al~~lg~a~~~lg-------~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      +.+++|.+|..-.       +...|+..|.+|....  +..+...++.++..
T Consensus       150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~  199 (292)
T COG0790         150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK  199 (292)
T ss_pred             HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence            6888998887642       3347999999998875  77778888877643

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.51  E-value=9.9  Score=38.53  Aligned_cols=86  Identities=15%  Similarity=0.093  Sum_probs=72.0

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHHhCCCcHH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLM----EPNNVKALFRRGRAQVS---MNNFEQGLQDYEQ-ALDLLPNDQQ  395 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l----dp~~~kal~~lg~a~~~---lg~~~~Al~~l~k-Al~l~P~n~~  395 (426)
                      ..+.+..++=.+|....+|+.-++..+..-.+    -++....-+..|.|+-.   .|+.++|+..+.. .....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            45567778888999999999999988777666    45677888899999988   9999999999999 4556678899


Q ss_pred             HHHHHHHHHHHHhh
Q psy6102         396 ILKEIAFVRKQMRH  409 (426)
Q Consensus       396 a~~~l~~i~~~l~~  409 (426)
                      +...++++++.+-.
T Consensus       219 ~~gL~GRIyKD~~~  232 (374)
T PF13281_consen  219 TLGLLGRIYKDLFL  232 (374)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998644

>KOG1839|consensus

Probab=87.39  E-value=2.9  Score=47.92  Aligned_cols=131  Identities=11%  Similarity=0.123  Sum_probs=102.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+....+.|......+.|.+|.+ ..+++.++...+        ..+.|.....|..+|..+.+++++++|+..+.+|.-
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~--------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM--------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh--------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence            56777888888888999999988 777777653222        234788999999999999999999999999988875


Q ss_pred             hC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         355 ME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--------LPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       355 ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--------~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      +.        |+....|-+++...+..+....|+..+.+++.+        .|.-..+..+++.++..+++.+.+.
T Consensus      1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred             eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence            53        566788999999889999999999999999885        3555556666777766666655544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.27  E-value=0.89  Score=46.42  Aligned_cols=59  Identities=14%  Similarity=0.340  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102         329 LLNMAAVQLKFKAYKRAINLCDDILLM---------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  388 (426)
Q Consensus       329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~l---------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~  388 (426)
                      +..+..++.-+|+|..|++.++- +++         -+.+...+|..|.||+++++|.+|++.|...|-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677789999999997643 222         256788899999999999999999999988865

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.08  E-value=2.3  Score=40.55  Aligned_cols=62  Identities=16%  Similarity=0.004  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy6102         295 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS  372 (426)
Q Consensus       295 Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~  372 (426)
                      |+.+|.+|+.+                .|.+...|+.+|.++...++.-.|+-+|-+++....-.+.|.-++...+..
T Consensus         1 A~~~Y~~A~~l----------------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRL----------------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-----------------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHh----------------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999                899999999999999999999999999999997776678888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.02  E-value=2.6  Score=36.65  Aligned_cols=50  Identities=10%  Similarity=0.158  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      +....++...+..|++.-|.+....++..+|+|.+++..+..++..++..
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            34444444445555555555555555555555555555555555554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.79  E-value=0.97  Score=27.00  Aligned_cols=23  Identities=13%  Similarity=0.091  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHH
Q psy6102         362 ALFRRGRAQVSMNNFEQGLQDYE  384 (426)
Q Consensus       362 al~~lg~a~~~lg~~~~Al~~l~  384 (426)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2422|consensus

Probab=85.63  E-value=13  Score=39.37  Aligned_cols=123  Identities=23%  Similarity=0.182  Sum_probs=91.7

Q ss_pred             Hhccchhhh---hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH--
Q psy6102         280 KNSGNEYFK---LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL--  354 (426)
Q Consensus       280 ~~~G~~~f~---~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~--  354 (426)
                      .+.|..+|+   ...|++|...|.-|+..++.....    ....-.|..+..+..+|.+....|+.+-|.....++|=  
T Consensus       239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~----~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~  314 (665)
T KOG2422|consen  239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVL----ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVF  314 (665)
T ss_pred             ccCceeEEEeecchHHHHHHHHHHHHHhhcCCccee----eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            456666665   567999999999888875432221    11222599999999999999999999988887777762  


Q ss_pred             ---hC----------------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Q psy6102         355 ---ME----------------PNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEIAFVRKQ  406 (426)
Q Consensus       355 ---ld----------------p~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-n~~a~~~l~~i~~~  406 (426)
                         +.                |.|   ..++|+.=+.+...|.+.-|.+.++..++++|. |+.+...+-.++..
T Consensus       315 d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL  389 (665)
T KOG2422|consen  315 DRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL  389 (665)
T ss_pred             HHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence               11                222   567888888889999999999999999999998 88766655555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=85.62  E-value=13  Score=37.74  Aligned_cols=109  Identities=14%  Similarity=0.006  Sum_probs=75.4

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+...-...+..|+|+.|+++.+......--        +.-..+-....++.-.|...+ .-+...|..+..++++|.
T Consensus       189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi--------e~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~  259 (531)
T COG3898         189 WAARATLEARCAAGDWDGALKLVDAQRAAKVI--------EKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA  259 (531)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh--------chhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC
Confidence            34444445567788999999988776654100        000001122334444444333 346888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      |+..-+-..-+.+|+..|+..++-..++.+-+.+|+-.
T Consensus       260 pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~  297 (531)
T COG3898         260 PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD  297 (531)
T ss_pred             CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence            99999999999999999999999999999999888644

>KOG0686|consensus

Probab=85.02  E-value=3.4  Score=41.89  Aligned_cols=111  Identities=16%  Similarity=0.246  Sum_probs=84.1

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+..+|..|...|+++.|++.|.++=+++..             ....+..|.|.-.+-..+++|..-..+-.+|...-
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~  217 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP  217 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence            46778999999999999999999997777533             23457789999999999999999998888887651


Q ss_pred             --------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------hCCCcHHHHHHH
Q psy6102         357 --------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD--------LLPNDQQILKEI  400 (426)
Q Consensus       357 --------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~--------l~P~n~~a~~~l  400 (426)
                              .-.+++.-.-|.+.+.+++|..|..+|-.+-.        +.|.|..+.-.+
T Consensus       218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL  277 (466)
T KOG0686|consen  218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL  277 (466)
T ss_pred             hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh
Confidence                    12345666778888888999999998876633        235555554444

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.92  E-value=3.5  Score=28.29  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=18.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102         364 FRRGRAQVSMNNFEQGLQDYEQALD  388 (426)
Q Consensus       364 ~~lg~a~~~lg~~~~Al~~l~kAl~  388 (426)
                      +.+|.+|..+|+++.|.+.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5667777777777777777777773

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=84.77  E-value=5.1  Score=33.89  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=54.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+--++..+...|+|++++..-.+||.+...-.+-.+     +-....+.+.+++|.++..+|+.++|+..++.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q-----deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ-----DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS-----THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc-----ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344556777888899999999999999998654332111     002345678899999999999999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=84.64  E-value=3.9  Score=41.86  Aligned_cols=137  Identities=14%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      +..+...+.-.|||..|++...       ....... .-.....+-.+..++..|.||+-+++|.+|++.+..+|-.-..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~-------~idl~~~-~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLE-------NIDLNKK-GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhh-------ccCcccc-hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677788777765542       2221111 1122335677889999999999999999999999988743221


Q ss_pred             CHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHH-HHhhHHHHHHHHHHhhhc
Q psy6102         359 NVKALFRRGRAQ-VSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRK-QMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       359 ~~kal~~lg~a~-~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~-~l~~~~~a~k~~~~k~f~  423 (426)
                      .-..+..+..-+ ......++....+--++.+.|.  +..+...+..-+. .+.+-++..-.+|..+|.
T Consensus       197 ~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~  265 (404)
T PF10255_consen  197 TKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFS  265 (404)
T ss_pred             hhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            111111121111 1235556677777778888885  5555555444433 222222223445555553

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=84.28  E-value=2.4  Score=31.71  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhh
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY  309 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~  309 (426)
                      ..+..+...|..+=+.|+|++|+.+|.+|++.+-..
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~   38 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA   38 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            355667778888888999999999999999986443

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=84.26  E-value=12  Score=35.66  Aligned_cols=84  Identities=18%  Similarity=0.129  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHH
Q psy6102         291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP------NNVKALF  364 (426)
Q Consensus       291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp------~~~kal~  364 (426)
                      .-...|.++++|++.......          .-....+...+|.-|++.|+|++|+..++.++..--      -....+.
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~----------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~  222 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQ----------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLW  222 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            344566777777776544332          334455777899999999999999999999965532      2266778


Q ss_pred             HHHHHHHHcCChHHHHHHHH
Q psy6102         365 RRGRAQVSMNNFEQGLQDYE  384 (426)
Q Consensus       365 ~lg~a~~~lg~~~~Al~~l~  384 (426)
                      .+..|+..+|+.+..+...-
T Consensus       223 ~l~~Ca~~~~~~~~~l~~~l  242 (247)
T PF11817_consen  223 RLLECAKRLGDVEDYLTTSL  242 (247)
T ss_pred             HHHHHHHHhCCHHHHHHHHH
Confidence            88889999999888776543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.02  E-value=2.6  Score=32.61  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=28.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW  308 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~  308 (426)
                      .+..+...|..+=+.|+|++|+.+|.+||+.+..
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4566777888888999999999999999998544

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.96  E-value=17  Score=39.36  Aligned_cols=120  Identities=15%  Similarity=0.070  Sum_probs=86.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhc-ccch---------hhhhhhcCcchHHHHHHHHHHHHHccCHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN-QSQS---------KTQQKHFRSYYTAALLNMAAVQLKFKAYKR  344 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~-~~~~---------~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~  344 (426)
                      .+..|.--|......+..+.|.+++.+|++.+.... ....         .+...-+.-....+...++.+.+-++++..
T Consensus       300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~  379 (608)
T PF10345_consen  300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK  379 (608)
T ss_pred             HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            455566677888888888899999999999987765 1100         011111122344567778889999999999


Q ss_pred             HHHHHHHHHHhC---C------CCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHhCCCcH
Q psy6102         345 AINLCDDILLME---P------NNVKALFRRGRAQVSMNNFEQGLQDYE--------QALDLLPNDQ  394 (426)
Q Consensus       345 Ai~~~~~AL~ld---p------~~~kal~~lg~a~~~lg~~~~Al~~l~--------kAl~l~P~n~  394 (426)
                      |......+....   |      -.+..+|-.|..+...|+.+.|+..|.        .+....+.+.
T Consensus       380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            999988877653   2      247789999999999999999999998        5555555544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.77  E-value=30  Score=31.92  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHH
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----DQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~----n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      +.++..+.+|.-|. ..+.++|+..|.++|++.+.    |+++...|..+...+++++.+
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            56788888877555 78889999999999998654    478888899888888877765

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=83.40  E-value=6.4  Score=40.55  Aligned_cols=58  Identities=10%  Similarity=0.071  Sum_probs=50.6

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      .......|.-+|.+|+|.+++.+-.-..++                .| .+.+|.-+|.|++..++|.+|..++.
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~i----------------aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKI----------------AP-SPQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHh----------------CC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            555677888899999999998887777777                78 89999999999999999999999874

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0530|consensus

Probab=83.22  E-value=9.2  Score=36.79  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=43.8

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC-----hHHHHHHHHHHHHhCCCcHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS-MNN-----FEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~-lg~-----~~~Al~~l~kAl~l~P~n~~  395 (426)
                      +..+-.+|..|-.|....+.|+.-+.++.+.|+.|--|-.||..|=.+... .|-     .+.-+.+..+.+.+.|+|..
T Consensus       143 DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS  222 (318)
T KOG0530|consen  143 DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES  222 (318)
T ss_pred             cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence            344444555555555555555555555555555555554454444333222 111     22334455555566677777


Q ss_pred             HHHHHHHHHHH
Q psy6102         396 ILKEIAFVRKQ  406 (426)
Q Consensus       396 a~~~l~~i~~~  406 (426)
                      ++..|.-++..
T Consensus       223 aWnYL~G~l~~  233 (318)
T KOG0530|consen  223 AWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHHHh
Confidence            77777766654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.98  E-value=12  Score=35.05  Aligned_cols=65  Identities=18%  Similarity=0.169  Sum_probs=57.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       333 A~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      ...+++-+...+||.....-++-+|.+.....-+=+.|.-.|++++|+.-++.+-++.|++..-.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a   72 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGA   72 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHH
Confidence            34567888999999999999999999999888888999999999999999999999999875433

>KOG1497|consensus

Probab=82.82  E-value=21  Score=35.24  Aligned_cols=96  Identities=10%  Similarity=0.018  Sum_probs=72.0

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCc
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN--------NVKALFRRGRAQVSMNNFEQGLQDYEQALD--LLPND  393 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~--------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~--l~P~n  393 (426)
                      .-..+...+|..|-+-++|..|...+ .++.++..        ....+.++|.+|...++..+|..+..++--  -+-.|
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N  179 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN  179 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence            34668899999999999999998876 33444321        134578899999999999999999988843  35588


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102         394 QQILKEIAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       394 ~~a~~~l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      ++.+..++.|+.+.-+++.+--++-++
T Consensus       180 e~Lqie~kvc~ARvlD~krkFlEAAqr  206 (399)
T KOG1497|consen  180 EQLQIEYKVCYARVLDYKRKFLEAAQR  206 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988877666554333333

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.44  E-value=7.7  Score=39.92  Aligned_cols=121  Identities=11%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch--hhhhhhcCcchHHHHHHHHH-HHH---Hcc----CHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAA-VQL---KFK----AYK  343 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~--~~~~~~~~p~~~~~~~nlA~-~~~---~lg----~~~  343 (426)
                      .......+.|..++..|++.+|+..|...|..++-......  ..+..++    ..+...... +.+   +..    ..+
T Consensus       202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~el----i~icrEYilgl~iEl~Rr~l~~~~~~  277 (422)
T PF06957_consen  202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKEL----IEICREYILGLSIELERRELPKDPVE  277 (422)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHH----HHHHHHHHHHHHHHHHHCTS-TTTHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccccchh
Confidence            34445677899999999999999999999987653322111  1122222    222221111 111   111    122


Q ss_pred             HHHHHHHHH-----HHhCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         344 RAINLCDDI-----LLMEPNNVKALFRRGRAQ-VSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       344 ~Ai~~~~~A-----L~ldp~~~kal~~lg~a~-~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      +..+.++.|     ++|.|.|.-.-++.|+.. ++.++|.-|..+-++.|++.|..+.+..
T Consensus       278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q  338 (422)
T PF06957_consen  278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ  338 (422)
T ss_dssp             HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence            222222222     356677777777777764 7789999999999999999998875544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.49  E-value=33  Score=38.31  Aligned_cols=108  Identities=19%  Similarity=0.102  Sum_probs=83.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+......+.......+|.+|-.+..++...++..+....       ....+..---+|.+....+++++|+..++.++.
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~-------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ-------GDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch-------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3444555666777778888988888888776544322111       233455667788999999999999999999998


Q ss_pred             hCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         355 MEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       355 ldp~~-----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      .=|.+     .-++...|.+..-.|++++|+...+.+.++
T Consensus       487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence            87755     567889999999999999999999999887

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=81.02  E-value=28  Score=35.44  Aligned_cols=94  Identities=12%  Similarity=0.015  Sum_probs=73.0

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHH--HHHHccCHHHHHHHHHHHHHh
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA--VQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~--~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...-.+....-.|+|+.|.+.|+--+.-                 |. ...+-.+|.  ...++|..+.|+.+..++-..
T Consensus       122 IhlLeAQaal~eG~~~~Ar~kfeAMl~d-----------------PE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~  183 (531)
T COG3898         122 IHLLEAQAALLEGDYEDARKKFEAMLDD-----------------PE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEK  183 (531)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHhcC-----------------hH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence            3445556666778999999999877652                 32 233333443  335799999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                      -|.-..++...=......|+++.|++.++....-
T Consensus       184 Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         184 APQLPWAARATLEARCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            9999999988888899999999999998876653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.37  E-value=2.2  Score=25.38  Aligned_cols=24  Identities=25%  Similarity=0.086  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      .+.+++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=80.33  E-value=40  Score=29.62  Aligned_cols=57  Identities=9%  Similarity=-0.063  Sum_probs=51.5

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ  378 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~  378 (426)
                      .|....+-.--|..++..|+|.+|+..++....-.+..+-+---++.|+..+||.+-
T Consensus        40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W   96 (153)
T TIGR02561        40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW   96 (153)
T ss_pred             CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence            899999999999999999999999999999998888888777788999999999754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK00969 hypothetical protein; Provisional

Probab=80.21  E-value=3.5  Score=42.84  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=21.1

Q ss_pred             eeEEEEecCCCChHHHHHHHHhh
Q psy6102          25 GRMVIELFKHIVPKTAENFRALC   47 (426)
Q Consensus        25 G~i~~~l~~~~~P~~~~nf~~l~   47 (426)
                      --|.|+||++.||+||.=|+++.
T Consensus       378 ~vi~IeLydd~AP~s~~yFR~~t  400 (508)
T PRK00969        378 KLIEIELYDDKAPRTVWYFRKVT  400 (508)
T ss_pred             HEEEEEEcCcCCchHHHHHHHhc
Confidence            36899999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		8e-33
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-18
1dyw_A	173	Biochemical And Structural Characterization Of A Di		4e-32
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		2e-31
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		7e-31
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		9e-29
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		1e-28
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-26
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		1e-26
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		2e-26
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		2e-26
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		8e-26
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		1e-25
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		3e-25
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		4e-25
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		2e-24
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		2e-24
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		2e-24
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-24
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		2e-24
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-24
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		2e-24
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		2e-24
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		2e-24
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		2e-24
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		2e-24
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		2e-24
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		3e-24
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		3e-24
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		3e-24
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		4e-24
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		5e-24
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		5e-24
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		5e-24
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		6e-24
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		7e-24
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		7e-24
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		7e-24
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		8e-24
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-23
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		2e-23
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		3e-23
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-22
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		1e-22
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		1e-22
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-22
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-22
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		2e-22
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		3e-22
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		8e-22
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		8e-22
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-21
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		4e-21
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		3e-20
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		5e-20
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-18
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		1e-17
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-17
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-17
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		6e-11
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		3e-10
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		6e-10
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		6e-10
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		6e-10
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		2e-09
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		2e-09
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		3e-09
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		3e-09
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		9e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-07
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		3e-07
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		2e-06
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		7e-06
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		9e-06
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		3e-05
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		4e-05
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		4e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		4e-04

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  FH
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFH 74
Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           RII +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct: 75  RIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 41/222 (18%)
Query: 242 IFGCVRQGFGVAREVSYVEAENDKPLVLN------------------------------- 270
           +FG V +G GVA+ +  VE + +KP  L                                
Sbjct: 148 VFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPE 207
Query: 271 ----QMEDVIR------TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 320
                ++DV +       +KN GN +FK      A +KY K +RY++    +        
Sbjct: 208 DADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267
Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
            +    + +LN+ A +LK   ++ A++ C + L ++P+N KAL+RR +    +  ++Q L
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327
Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422
            D ++A ++ P D+ I  E+  V+++++   + EK  YA+MF
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 73/97 (75%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D++IG +  GR+V+EL+  +VPKTA NFRALCTGE G GK GK LHF GS FHRIIP
Sbjct: 6   VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
            FMIQGGD T  NGTGGESIYG  F DENFK K   P
Sbjct: 66  NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGP 102

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 73/95 (76%)
Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
           +GN +V+ D+SIG+   GR+ +ELF   VP TAENFRALCTGE G G+ GK L +TGS F
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFF 76
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF 102
           HRIIPQFMIQGGD T  +GTGGESIYG  F DENF
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENF 111

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  131 bits (330), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 71/96 (73%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+SI  +  GR+V+EL+   VPKTAENFRALCTGE GKG+ GK LH+  S FHR
Sbjct: 7   NPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHR 66
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           +IP FMIQGGD T  NGTGGESIYG  F DE+F  K
Sbjct: 67  VIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGK 102

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  124 bits (312), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D+SI     GR++ ELF  I P+T ENFRALCTGE   G  GK LH+  S FHRIIP
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRIIP 64
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           QFM QGGDITN NG+GGESIYG  F DENF +K   P
Sbjct: 65  QFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQP 101

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D+SI     GR++ ELF  I P+T ENFRALCTGE   G  GK LH+  S FHRIIP
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRIIP 64
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           QFM QGGDITN NG+GGESIYG  F DENF +K   P
Sbjct: 65  QFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQP 101

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 70/102 (68%), Gaps = 7/102 (6%)
Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
            GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G       + GS F
Sbjct: 2   SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 54
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           HR+IP FM Q GD TN NGTGG+SIYG  F DENF LK + P
Sbjct: 55  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 96

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 70/102 (68%), Gaps = 7/102 (6%)
Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
            GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G       + GS F
Sbjct: 1   SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTF 53
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           HR+IP FM Q GD TN NGTGG+SIYG  F DENF LK + P
Sbjct: 54  HRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 95

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G       + GS FH
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 53
Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           R+IP FM Q GD TN NGTGG+SIYG  F DENF LK + P
Sbjct: 54  RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 94

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G       + GS FH
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 54
Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           R+IP FM Q GD TN NGTGG+SIYG  F DENF LK + P
Sbjct: 55  RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 95

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  114 bits (286), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N +VF DV    E +GR+ +ELF +IVP+TAENFRALCTGE G G       F  S FHR
Sbjct: 6   NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHR 58
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           +IP F+ QGGDIT  +GTGG+SIYG  FEDENF +K   P
Sbjct: 59  VIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGP 98

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N +VF DVSIG ++VGRM IELF  +VPKTAENFR  CTGE+ K   G  + + GS FHR
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKD--GVPIGYKGSTFHR 67
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           +I  FMIQGGD  N +GTG  SIY   F DENFKL+   P
Sbjct: 68  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAP 107

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
           VFLDV+I     GR+V+EL+  I P+T  NF  LCTG  G GK+ GK LH+ GS FHR+I
Sbjct: 9   VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
             FMIQGGD T  +GTGGESIYG  F+DE F +K
Sbjct: 69  KNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMK 102

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 65/93 (69%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF DV IG++ VGR+VI LF  +VPKT ENF AL TGE G G       + GS FHR+I 
Sbjct: 18  VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIK 70
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGDIT  +GTGG SIYG  F DENFKLK
Sbjct: 71  DFMIQGGDITTGDGTGGVSIYGETFPDENFKLK 103

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T+ NGTGG+SIYG  FEDENF LK   P
Sbjct: 55  IIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGP 94

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE       K   + GS FHR
Sbjct: 22  NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGE-------KGFGYKGSCFHR 74
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 75  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 114

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 94

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 55  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 94

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 7   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 59
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 60  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 99

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 63/91 (69%), Gaps = 7/91 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ DV    + +GR+V +L+  IVPKTAENFRALCTGE       K   + GS FHR+IP
Sbjct: 4   VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGE-------KGFGYAGSPFHRVIP 56
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFK 103
            FM+QGGD T  NGTGG+SIYG  F DENFK
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGGKFPDENFK 87

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 11  NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 63
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 64  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 103

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D++IG+E VGR+VI LF + VPKT ENF+ L +GE G G       + GS FHR+I 
Sbjct: 8   VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVIR 60
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGD TNF+GTGG+SIYG  F+DEN K+K
Sbjct: 61  NFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIK 93

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 65/93 (69%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF DV IG++ VGR+VI LF ++VPKT ENF AL TGE G G       + GS FHR+I 
Sbjct: 10  VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVIK 62
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGD T  +GTGG SIYG  F DENFKLK
Sbjct: 63  DFMIQGGDFTARDGTGGMSIYGETFPDENFKLK 95

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  V++D+ IG +  GR+ + L   +VP TAENFR LCT E G G       F GS FHR
Sbjct: 11  NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 63
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIPQFM QGGD TN NGTGG+SIYG  F+DENF LK   P
Sbjct: 64  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP 103

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D++     +G +  +LF  +VPKTA NFRALCTGE G G       + GSHFHR+IP
Sbjct: 4   VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVIP 56
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FM+QGGD T  NGTGG+SIYG  F DENF+LK
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLK 89

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  V++D+ IG +  GR+ + L   +VP TAENFR LCT E G G       F GS FHR
Sbjct: 3   NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIPQFM QGGD TN NGTGG+SIYG  F+DENF LK   P
Sbjct: 56  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP 95

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 66/100 (66%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FH+
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHK 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRII 71
            F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+    FHR++
Sbjct: 12  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 71
Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
             FM+QGGD +  NG GGESIYG  FEDE+F +K
Sbjct: 72  KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 14  FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRIIP 72
           F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+    FHR++ 
Sbjct: 13  FFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVK 72
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FM+QGGD +  NG GGESIYG  FEDE+F +K
Sbjct: 73  DFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGG+ T+ NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 63/94 (67%), Gaps = 1/94 (1%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRII 71
            F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+    FHR++
Sbjct: 29  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
             FM+QGGD +  NG GGESIYG  FEDE+F +K
Sbjct: 89  KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 122

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 55
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FM QGG+ T+ NGTGG+SIYG  FEDENF LK   P
Sbjct: 56  IIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGP 95

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 65/100 (65%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 54
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP F  QGGD T  NGTGG+SIYG  FEDENF LK   P
Sbjct: 55  IIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGP 94

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D+ IG    GR+V+EL   IVP+TAENFRALCTGE G G       +    FHR+IP
Sbjct: 13  VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIP 65
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           QFM QGGD    +GTGG+SIYG  F+DENF+L+
Sbjct: 66  QFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLR 98

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 68/102 (66%), Gaps = 7/102 (6%)
Query: 4   SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFT 63
           S+ KE +  V+ DV   EE +GR+V++L   IVPKTA+NFR LC    G+G       + 
Sbjct: 21  SMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YK 73
Query: 64  GSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           GS FHRIIP FM+QGGD T  NGTGG SIYG  F DENF+LK
Sbjct: 74  GSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELK 115

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 63/100 (63%), Gaps = 7/100 (7%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  V+ D+ IG +  GR+   L   +VP TAENFR LCT E G G       F GS FHR
Sbjct: 12  NPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFHR 64
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIPQF  QGGD TN NGTGG+SIYG  F+DENF LK   P
Sbjct: 65  IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP 104

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Query: 5   ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTG 64
           +    N +VF+D+++G   +G+   ELF++IVPKT+ENFR  CTGEY    L   + +  
Sbjct: 54  LTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNL--PVGYKN 111
Query: 65  SHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           + FHR+I +FMIQGGD  N NG+G  SIYG  F+DENF +K
Sbjct: 112 TIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIK 152

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 7/97 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D+ IG+E +GR+VI LF   VPKT +NF AL TGE G G       +  S FHR+I 
Sbjct: 15  VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIK 67
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
            FMIQGGD T  +GTGG+SIYG  F DENFKLK   P
Sbjct: 68  DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 104

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 7/97 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D+ IG+E +GR+VI LF   VPKT +NF AL TGE G G       +  S FHR+I 
Sbjct: 15  VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKFHRVIK 67
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
            FMIQGGD T  +GTGG+SIYG  F DENFKLK   P
Sbjct: 68  DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 104

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 15  LDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRIIPQ 73
            D+ I  E VGR++ +LF  I PKT +NF  LC+GE G GK  GK L + GS FHR++  
Sbjct: 24  FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 74  FMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           FMIQGGD +  NG GGESIYG  F+DENF LK
Sbjct: 84  FMIQGGDFSEGNGKGGESIYGGYFKDENFILK 115

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 7/97 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF ++SI ++  GR+V +L+   VPKTA+NFR L TG++G G       +  S FHR+IP
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           QFM+QGGD T  NGTGG+SIYG  F DENF++K   P
Sbjct: 58  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 94

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 7/97 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF ++SI ++  GR+V +L+   VPKTA+NFR L TG++G G       +  S FHR+IP
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           QFM+QGGD T  NGTGG+SIYG  F DENF++K   P
Sbjct: 59  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 95

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D+ IG+E VGR++  LF   VPKT +NF AL TGE       K   +  S FHR+I 
Sbjct: 18  VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-------KGFGYKNSKFHRVIK 70
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
            FMIQGGD T  +GTGG+SIYG  F DENFKLK   P
Sbjct: 71  DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 107

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D+ IG+E VGR++  LF   VPKT +NF AL TGE G G       +  S FHR+I 
Sbjct: 8   VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHRVIK 60
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
            FMIQGGD T  +GTGG+SIYG  F DENFKLK   P
Sbjct: 61  DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGP 97

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ DV I  E +GR+ I LF    P T ENFR LCTGE+G G       +  S FHR+I 
Sbjct: 14  VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVIQ 66
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGD TNF+GTGG+SIYG  F DEN  +K
Sbjct: 67  NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK 99

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ DV I  E +GR+ I LF    P T ENFR LCTGE+G G       +  S FHR+I 
Sbjct: 14  VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHRVIQ 66
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGD TNF+GTGG+SIYG  F DEN  +K
Sbjct: 67  NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK 99

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 58/98 (59%), Gaps = 12/98 (12%)
Query: 13  VFLDV-----SIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
           VF DV        E KVGR+V  LF   VPKTA+NFR LC    G+G       +  S F
Sbjct: 5   VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTF 57
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           HRIIP FMIQGGD T  NGTGG SIYG  F DENF  K
Sbjct: 58  HRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRK 95

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 59/93 (63%), Gaps = 7/93 (7%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D+ IG + +GR+VI LF   VPKTA NF  L     G+G       + GS FHR+I 
Sbjct: 9   VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIA 61
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGD T  +GTGG SIYG  F DENFKLK
Sbjct: 62  DFMIQGGDFTRGDGTGGRSIYGEKFADENFKLK 94

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           +K  G  YFK  +   A  +YKK V +++ Y  S S  + +  ++   A+ LN+A   LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            +A+  AI  C+  L ++ NN K LFRRG A +++N+FE    D+++ L L PN++    
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
           ++A  ++++R  L  EK  YA MF+
Sbjct: 269 QLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           +K  G  YFK  +   A  +YKK V +++ Y  S S  + +  ++   A+ LN+A   LK
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            +A+  AI  C+  L ++ NN K L RRG A +++N+FE    D+++ L L PN++    
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
           ++A  ++++R  L  EK  YA MF+
Sbjct: 269 QLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           +K  G  YFK  +   A  +Y K V +++      S+ + K   S+  AA LN+A   LK
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            + Y +A+  CD  L ++  N K L+RRG AQ+ MN FE    D+E+ L++ P ++    
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
           +I   +K+ + H   ++ TYA MF+
Sbjct: 390 QIFMCQKKAKEHNERDRRTYANMFK 414

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           +K  G  YFK  +   A  +Y K V +++      S+ + K   S+  AA LN+A   LK
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            + Y +A+  CD  L ++  N K L+RRG AQ+ MN FE    D+E+ L++ P ++    
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQ 423
           +I+  +K+ + H   ++  YA MF+
Sbjct: 390 QISMCQKKAKEHNERDRRIYANMFK 414

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYI--KWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 337
           K  GN  FK  ++ +A ++Y+ A+ Y+   +  Q   K Q     +      LN+AA  +
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMAL-AVKNPCHLNIAACLI 241
Query: 338 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
           K K Y  AI  C+ +L  E  N KALFRRG+A+  +   +    D+ +A    P+D+ I 
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301
Query: 398 KEIAFVRKQMRHHLNLEKMTYARMFQ 423
           +E+  + +Q +     +K  Y  +F+
Sbjct: 302 RELRALAEQEKALYQKQKEMYKGIFK 327

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%)
Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           IK  GNE+FK N +++A  KYK+A+ +     +   +      ++   +  LN+A    K
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            K Y +AI+    +L ++ NNVKAL++ G A +     E+  ++  +A  L PN+  I  
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160
Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQNG 425
                  +++     +K+T+  MF  G
Sbjct: 161 SYELCVNKLKEARKKDKLTFGGMFDKG 187

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
           E  +G +V+EL+    PKT +NF           +L +  ++ G+ FHRII  FMIQGGD
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81  ITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPG 115
            T   G GG SIYG  FEDE      ++P  K+ G
Sbjct: 67  PTG-TGRGGASIYGKQFEDE------LHPDLKFTG 94

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
           E  +G +V+EL+    PKT +NF           +L +  ++ G+ FHRII  FMIQGGD
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81  ITNFNGTGGESIYGPCFEDE 100
            T   G GG SIYG  FEDE
Sbjct: 67  PTG-TGRGGASIYGKQFEDE 85

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
           E  +G +V+EL+    PKT +NF           +L +  ++ G+ FHRII  FMIQGGD
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81  ITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPG 115
            T   G GG SIYG  FEDE      ++P  K+ G
Sbjct: 67  PTG-TGRGGASIYGKQFEDE------LHPDLKFTG 94

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 15  VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 64
Query: 84  FNGTGGESIYGPCFEDE 100
             G GG SI+G  FEDE
Sbjct: 65  -TGRGGNSIWGKKFEDE 80

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58
Query: 84  FNGTGGESIYGPCFEDE 100
             G GG SI+G  FEDE
Sbjct: 59  -TGRGGNSIWGKKFEDE 74

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G   +EL+ +  PKT  NF  LC  E G         +  + FHR+IP F+IQGGD T 
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPTG 96
Query: 84  FNGTGGESIYGPCFEDE 100
             G GG+SIYG  FEDE
Sbjct: 97  -TGKGGKSIYGEYFEDE 112

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
            G + IEL+    PK   NF  LC   Y          +  + FHR++P F++QGGD T 
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCLEAY----------YDNTIFHRVVPGFIVQGGDPTG 82
Query: 84  FNGTGGESIYGPCFEDE 100
             G+GGESIYG  F+DE
Sbjct: 83  -TGSGGESIYGAPFKDE 98

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
           G +  ELF    PK  +NF AL    Y K  +          FH+ I  F+IQGGD T  
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSASGYYKNTI----------FHKNIKGFIIQGGDPTG- 74
Query: 85  NGTGGESIYGPCFEDENFKLKGIYPKNKY 113
            G GGESIYG  F+DE      IYP+ KY
Sbjct: 75  TGKGGESIYGRYFDDE------IYPELKY 97

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 333
           +     KN GN Y+K       Q  Y+KA+ Y +         +         +A  N+ 
Sbjct: 7   NSAEAWKNLGNAYYK-------QGDYQKAIEYYQ---------KALELDPNNASAWYNLG 50
Query: 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
               K   Y++AI      L ++PNN KA +RRG A     ++++ ++DY++AL+L PN+
Sbjct: 51  NAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Query: 394 QQILKEIAFVRKQM 407
            +  + +   +++ 
Sbjct: 111 AKAKQNLGNAKQKQ 124

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 16  DVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFM 75
           D +I    +G +  +LF    PKT ENF       Y          + G  FHRII  FM
Sbjct: 22  DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY----------YNGHTFHRIIKGFM 71
Query: 76  IQGGDITNFNGTGGESIYGPCFEDE 100
           IQ GD T   G GGESI+G  FEDE
Sbjct: 72  IQTGDPTG-TGMGGESIWGGEFEDE 95

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEY------GKGKLGKALH----F 62
           V++D+ +  E +GR+ I+LF+   P   ENF  L  G+       G GK     H    +
Sbjct: 17  VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 63  TGSHFHRIIPQFMIQGGDITNFNGTGGESIY-----GPCFED 99
            G  FH ++    I  GDI N NG+   ++Y      P F D
Sbjct: 77  EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD 118

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
           AI +C ++L MEP+NV AL  R  A +    +++ +QDYE A +   NDQQI
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G + I LF     KT +NF       Y          +    FHR+I  FM+Q GD + 
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHSINGY----------YNNCIFHRVIKHFMVQTGDPSG 63
Query: 84  FNGTGGESIYGPCFEDENF 102
            +GTGGESI+G  FEDE F
Sbjct: 64  -DGTGGESIWGNEFEDEFF 81

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
           AI +C ++L  EP+NV AL  R  A +    +++ +QDYE A +   NDQQI
Sbjct: 291 AIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQI 342

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
           AI +C ++L  EP+NV AL  R  A +    +++ +QDYE A +   NDQQI
Sbjct: 314 AIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQI 365

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL-NMAAVQLK 338
           KN GNEYFK      A R Y +AV+                 R    A L  N AA   K
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVK-----------------RDPENAILYSNRAACLTK 59
Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395
              ++RA++ CD  + ++   +K   R+    V+M  + +  + YE AL + P++++
Sbjct: 60  LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKHFRSYYTAALLNM 332
            +  I   GN  ++   + +A  KY  A+  +K     +     +        T  LLN 
Sbjct: 13  AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 72
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
              +L  + Y   ++ C  IL    +NVKA F+RG+A  ++ N ++   D+ + L+L P
Sbjct: 73  CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 131

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKHFRSYYTAALLNM 332
            +  I   GN  ++   + +A  KY  A+  +K     +     +        T  LLN 
Sbjct: 7   AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 66
Query: 333 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
              +L  + Y   ++ C  IL    +NVKA F+RG+A  ++ N ++   D+ + L+L P
Sbjct: 67  CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 333
           D+   +KN GNE F+      A + Y +A+           K   K  + Y      N A
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAI-----------KRNPKDAKLYS-----NRA 57
Query: 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
           A   K   ++ A+  C++ + +EP  +K   R+  A  +M ++ + +  Y++ALDL
Sbjct: 58  ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	9e-61
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-60
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-60
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	6e-60
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	3e-59
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	7e-59
1z81_A	229	Cyclophilin; structural genomics, structural genom	2e-57
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	5e-55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-48
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	3e-53
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	6e-53
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	6e-53
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	7e-53
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-52
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-52
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	2e-52
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	4e-52
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-51
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	5e-41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-39
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-38
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-36
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	9e-29
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-28
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-27
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-26
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-26
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	3e-25
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	2e-24
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-24
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	9e-24
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	2e-22
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	6e-22
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	5e-20
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	9e-20
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	9e-20
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-19
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	8e-19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-18
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-17
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-05
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	2e-15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-15
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	7e-15
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	8e-15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-06
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	4e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-04

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  194 bits (496), Expect = 9e-61
 Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGS 65
             G+     D+ I  E VGR++ +LF  I PKT +NF  LC+GE G GK  GK L + GS
Sbjct: 16  PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FHR++  FMIQGGD +  NG GGESIYG  F+DENF LK
Sbjct: 76  TFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILK 115

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  193 bits (494), Expect = 1e-60
 Identities = 56/100 (56%), Positives = 68/100 (68%), Gaps = 1/100 (1%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
           K+    VFLDV+I     GR+V+EL+  I P+T  NF  LCTG  G GK+ GK LH+ GS
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FHR+I  FMIQGGD T  +GTGGESIYG  F+DE F +K
Sbjct: 63  TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMK 102

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  193 bits (494), Expect = 1e-60
 Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
           K      F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+   
Sbjct: 6   KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSC 65

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FHR++  FM+QGGD +  NG GGESIYG  FEDE+F +K
Sbjct: 66  LFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  192 bits (490), Expect = 6e-60
 Identities = 63/103 (61%), Positives = 76/103 (73%)

Query: 3   KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHF 62
           +++  +GN +V+ D+SIG+   GR+ +ELF   VP TAENFRALCTGE G G+ GK L +
Sbjct: 12  ENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCY 71

Query: 63  TGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           TGS FHRIIPQFMIQGGD T  +GTGGESIYG  F DENF   
Sbjct: 72  TGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYT 114

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  190 bits (485), Expect = 3e-59
 Identities = 59/105 (56%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
           M  +     N +VF DVSIG ++VGRM IELF  +VPKTAENFR  CTGE    K G  +
Sbjct: 1   MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPI 58

Query: 61  HFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            + GS FHR+I  FMIQGGD  N +GTG  SIY   F DENFKL+
Sbjct: 59  GYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLR 103

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  189 bits (482), Expect = 7e-59
 Identities = 65/96 (67%), Positives = 72/96 (75%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
              VF D++IG +  GR+V+EL+  +VPKTA NFRALCTGE G GK GK LHF GS FHR
Sbjct: 3   RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           IIP FMIQGGD T  NGTGGESIYG  F DENFK K
Sbjct: 63  IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEK 98

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  187 bits (477), Expect = 2e-57
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
           +   +    N +VF+D+++G   +G+   ELF++IVPKT+ENFR  CTGE         +
Sbjct: 50  LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGE--YKVNNLPV 107

Query: 61  HFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            +  + FHR+I +FMIQGGD  N NG+G  SIYG  F+DENF +K
Sbjct: 108 GYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIK 152

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  183 bits (466), Expect = 2e-56
 Identities = 60/96 (62%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
              VF D+SI     GR++ ELF  I P+T ENFRALCTGE   G  GK LH+  S FHR
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFHR 61

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           IIPQFM QGGDITN NG+GGESIYG  F DENF +K
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMK 97

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  185 bits (472), Expect = 5e-55
 Identities = 69/100 (69%), Positives = 74/100 (74%), Gaps = 1/100 (1%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
              N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G 
Sbjct: 12  NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGC 71

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct: 72  PFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  167 bits (426), Expect = 3e-48
 Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 41/225 (18%)

Query: 239 KNGIFGCVRQGFGVAREVSYVEAENDKPLV------------------------------ 268
           K+ +FG V +G GVA+ +  VE + +KP                                
Sbjct: 145 KHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPD 204

Query: 269 -----------LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
                      ++++  +   +KN GN +FK      A +KY K +RY++    +     
Sbjct: 205 FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 264

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
               +    + +LN+ A +LK   ++ A++ C + L ++P+N KAL+RR +    +  ++
Sbjct: 265 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324

Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 422
           Q L D ++A ++ P D+ I  E+  V+++++   + EK  YA+MF
Sbjct: 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  176 bits (449), Expect = 3e-53
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG----------KL 56
              N  V++D+ +  E +GR+ I+LF+   P   ENF  L  G+  +             
Sbjct: 11  SGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNR 70

Query: 57  GKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED---ENFKLK 105
                + G  FH ++    I  GDI N NG+   ++Y          ++   
Sbjct: 71  HINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYP 122

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  173 bits (442), Expect = 6e-53
 Identities = 55/105 (52%), Positives = 66/105 (62%), Gaps = 7/105 (6%)

Query: 1   MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
           M     K     VF D+ IG    GR+V+EL   IVP+TAENFRALCTGE G G      
Sbjct: 1   MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG------ 54

Query: 61  HFTGSHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            +    FHR+IPQFM QGGD    +GTGG+SIYG  F+DENF+L+
Sbjct: 55  -YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLR 98

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  173 bits (442), Expect = 6e-53
 Identities = 51/96 (53%), Positives = 60/96 (62%), Gaps = 7/96 (7%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
              V+ DV I  E +GR+ I LF    P T ENFR LCTGE+G G       +  S FHR
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHR 63

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           +I  FMIQGGD TNF+GTGG+SIYG  F DEN  +K
Sbjct: 64  VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK 99

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  174 bits (443), Expect = 7e-53
 Identities = 52/96 (54%), Positives = 62/96 (64%), Gaps = 7/96 (7%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
              V+ D+ IG+E VGR++  LF   VPKT +NF AL TGE G G       +  S FHR
Sbjct: 15  TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHR 67

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           +I  FMIQGGD T  +GTGG+SIYG  F DENFKLK
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLK 103

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  172 bits (439), Expect = 1e-52
 Identities = 56/96 (58%), Positives = 65/96 (67%), Gaps = 7/96 (7%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  V++D+ IG +  GR+ + L   +VP TAENFR LCT E G G       F GS FHR
Sbjct: 11  NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 63

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           IIPQFM QGGD TN NGTGG+SIYG  F+DENF LK
Sbjct: 64  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILK 99

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  172 bits (438), Expect = 2e-52
 Identities = 58/97 (59%), Positives = 68/97 (70%), Gaps = 7/97 (7%)

Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G       + GS FH
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 54

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           R+IP FM Q GD TN NGTGG+SIYG  F DENF LK
Sbjct: 55  RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLK 91

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  171 bits (437), Expect = 2e-52
 Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 7/97 (7%)

Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
               VF ++SI ++  GR+V +L+   VPKTA+NFR L TG++G G       +  S FH
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFH 53

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           R+IPQFM+QGGD T  NGTGG+SIYG  F DENF++K
Sbjct: 54  RVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVK 90

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  172 bits (438), Expect = 4e-52
 Identities = 55/99 (55%), Positives = 66/99 (66%), Gaps = 7/99 (7%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSH 66
           KE +  V+ DV   EE +GR+V++L   IVPKTA+NFR LC    G+G       + GS 
Sbjct: 24  KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGST 76

Query: 67  FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           FHRIIP FM+QGGD T  NGTGG SIYG  F DENF+LK
Sbjct: 77  FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELK 115

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  170 bits (434), Expect = 1e-51
 Identities = 58/96 (60%), Positives = 65/96 (67%), Gaps = 7/96 (7%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 22  NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 74

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK
Sbjct: 75  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILK 110

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  165 bits (419), Expect = 1e-49
 Identities = 54/101 (53%), Positives = 58/101 (57%), Gaps = 12/101 (11%)

Query: 10  NYIVFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTG 64
              VF DV        E KVGR+V  LF   VPKTA+NFR LC    G+G       +  
Sbjct: 2   MSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRE 54

Query: 65  SHFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           S FHRIIP FMIQGGD T  NGTGG SIYG  F DENF  K
Sbjct: 55  STFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRK 95

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  143 bits (362), Expect = 5e-41
 Identities = 41/153 (26%), Positives = 73/153 (47%)

Query: 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 333
                IK  GNE+FK N +++A  KYK+A+ +     +   +      ++   +  LN+A
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
               K K Y +AI+    +L ++ NNVKAL++ G A +     E+  ++  +A  L PN+
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155

Query: 394 QQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK 426
             I         +++     +K+T+  MF  G 
Sbjct: 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  143 bits (361), Expect = 3e-39
 Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 1/172 (0%)

Query: 255 EVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 314
             S+ +A+    +   +  +    +K  G  YFK  +   A  +YKK V +++ Y  S S
Sbjct: 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFS 184

Query: 315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374
             + +  ++   A+ LN+A   LK +A+  AI  C+  L ++ NN K L RRG A +++N
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244

Query: 375 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK 426
           +FE    D+++ L L PN++    ++A  ++++R  L  EK  YA MF+   
Sbjct: 245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  135 bits (343), Expect = 1e-38
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 3/157 (1%)

Query: 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN--QSQSKTQQKHFRSYYTA 327
           +     +  ++  GNE F      +A   Y+ A+  +      +   + +          
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
              NM+   L       A     ++L  E  N KALFRR +A+++    ++  +D +  L
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124

Query: 388 DLLPNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQ 423
              P    ++ +E+  V ++        ++TY++MFQ
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  140 bits (353), Expect = 4e-38
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 1/166 (0%)

Query: 262 ENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW-YNQSQSKTQQKH 320
           +    + + +        K  GN  FK  ++ +A ++Y+ A+ Y+   +        Q  
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224

Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
             +      LN+AA  +K K Y  AI  C+ +L  E  N KALFRRG+A+  +   +   
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284

Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK 426
            D+ +A    P+D+ I +E+  + +Q +     +K  Y  +F+   
Sbjct: 285 DDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  138 bits (349), Expect = 1e-36
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 1/164 (0%)

Query: 261 AENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 320
           A+    +   +  +    +K  G  YFK  +   A  +Y K V +++      S+ + K 
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKA 311

Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
             S+  AA LN+A   LK + Y +A+  CD  L ++  N K L+RRG AQ+ MN FE   
Sbjct: 312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 371

Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 424
            D+E+ L++ P ++    +I+  +K+ + H   ++  YA MF+ 
Sbjct: 372 GDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  109 bits (275), Expect = 9e-29
 Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 11/80 (13%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G + I LF     KT +NF       Y          +    FHR+I  FM+Q GD + 
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHSINGY----------YNNCIFHRVIKHFMVQTGDPSG 63

Query: 84  FNGTGGESIYGPCFEDENFK 103
            +GTGGESI+G  FEDE F 
Sbjct: 64  -DGTGGESIWGNEFEDEFFD 82

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  108 bits (272), Expect = 3e-28
 Identities = 37/94 (39%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
              D +I    +G +  +LF    PKT ENF       Y          + G  FHRII 
Sbjct: 19  RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY----------YNGHTFHRIIK 68

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLK 105
            FMIQ GD T   G GGESI+G  FEDE +  L+
Sbjct: 69  GFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTLR 101

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  107 bits (270), Expect = 1e-27
 Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 12/83 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G +V+EL+    PKT +NF  L    Y          + G+ FHRII  FMIQGGD T 
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69

Query: 84  FNGTGGESIYGPCFEDE-NFKLK 105
             G GG SIYG  FEDE +  LK
Sbjct: 70  -TGRGGASIYGKQFEDELHPDLK 91

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  104 bits (261), Expect = 2e-26
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 12/83 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G   +EL+ +  PKT  NF  LC   +          +  + FHR+IP F+IQGGD T 
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLCEMGF----------YDNTIFHRVIPNFVIQGGDPTG 96

Query: 84  FNGTGGESIYGPCFEDE-NFKLK 105
             G GG+SIYG  FEDE N +LK
Sbjct: 97  -TGKGGKSIYGEYFEDEINKELK 118

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  103 bits (258), Expect = 2e-26
 Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 12/83 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G +V+EL+    PKT +NF  L    Y          + G+ FHRII  FMIQGGD T 
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69

Query: 84  FNGTGGESIYGPCFEDE-NFKLK 105
             G GG SIYG  FEDE +  LK
Sbjct: 70  -TGRGGASIYGKQFEDELHPDLK 91

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  100 bits (252), Expect = 3e-25
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           ++          G +  ELF    PK  +NF AL    Y          +  + FH+ I 
Sbjct: 14  LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY----------YKNTIFHKNIK 63

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDE 100
            F+IQGGD T   G GGESIYG  F+DE
Sbjct: 64  GFIIQGGDPTG-TGKGGESIYGRYFDDE 90

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 97.6 bits (244), Expect = 2e-24
 Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58

Query: 84  FNGTGGESIYGPCFEDE 100
             G GG SI+G  FEDE
Sbjct: 59  -TGRGGNSIWGKKFEDE 74

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 97.0 bits (242), Expect = 3e-24
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)

Query: 261 AENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 320
               +P         +  ++  GNE FK          Y  A   +  Y Q+        
Sbjct: 13  PGTPEPRPATPGASSVEQLRKEGNELFK-------CGDYGGA---LAAYTQALGLDATPQ 62

Query: 321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
            ++       N AA  LK + Y +A       +  +  +VKAL+RR +A   +   +Q +
Sbjct: 63  DQAVL---HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119

Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQM 407
            D ++ + L P ++   + +  +    
Sbjct: 120 LDLQRCVSLEPKNKVFQEALRNISGPS 146

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 96.6 bits (241), Expect = 9e-24
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
            G + IEL+    PK   NF  LC   Y          +  + FHR++P F++QGGD T 
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCLEAY----------YDNTIFHRVVPGFIVQGGDPTG 82

Query: 84  FNGTGGESIYGPCFEDE 100
             G+GGESIYG  F+DE
Sbjct: 83  -TGSGGESIYGAPFKDE 98

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
            G + +EL   + PKT ENF  LC   Y          + G+ FHR I  F+IQGGD T 
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG 77

Query: 84  FNGTGGESIYGPCFEDE 100
             GTGGES +G  F+DE
Sbjct: 78  -TGTGGESYWGKPFKDE 93

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 92.0 bits (229), Expect = 6e-22
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 22/94 (23%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
            G + IEL   + P+  ++F  LC  +Y          F  + FHR I  FMIQGG    
Sbjct: 15  QGSLNIELHADMAPRACDSFLRLCAVKY----------FDDTIFHRCIRNFMIQGGRAEL 64

Query: 84  F----NGTGGESIY-------GPCFEDE-NFKLK 105
                     +S         G  FEDE + +L 
Sbjct: 65  RQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLV 98

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 85.9 bits (213), Expect = 5e-20
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K   N+YFK        + Y+ A   IK+Y+Q+           YY     N +   L+ 
Sbjct: 17  KTQANDYFK-------AKDYENA---IKFYSQAIELNPSNA--IYYG----NRSLAYLRT 60

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
           + Y  A+      + ++   +K  +RR  + +++  F   L+DYE  + + P+D+    +
Sbjct: 61  ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120

Query: 400 IAFVRKQMR 408
                K ++
Sbjct: 121 YQECNKIVK 129

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score = 86.7 bits (215), Expect = 9e-20
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G + +EL+    P    NF  LC   Y          +  + FHR++  F++QGGD T 
Sbjct: 30  LGDLDVELWARECPLACRNFVQLCLEGY----------YVNTIFHRVVKDFIVQGGDPTG 79

Query: 84  FNGTGG--ESIYGPCFEDE 100
             G GG   +  G  F+ E
Sbjct: 80  -TGRGGADTTFDGKPFDVE 97

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 83.8 bits (208), Expect = 9e-20
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 16/126 (12%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           KN GNEYFK       +  Y  A   ++ YN++  +  +      Y+    N AA   K 
Sbjct: 17  KNKGNEYFK-------KGDYPTA---MRHYNEAVKRDPENA--ILYS----NRAACLTKL 60

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
             ++RA++ CD  + ++   +K   R+    V+M  + +  + YE AL + P++++  + 
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

Query: 400 IAFVRK 405
           +    +
Sbjct: 121 VRNCLR 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 83.1 bits (206), Expect = 2e-19
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           KN GNE F+       +  Y +A   +K Y ++  +  +      Y+    N AA   K 
Sbjct: 20  KNKGNECFQ-------KGDYPQA---MKHYTEAIKRNPKDA--KLYS----NRAACYTKL 63

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
             ++ A+  C++ + +EP  +K   R+  A  +M ++ + +  Y++ALDL  + ++    
Sbjct: 64  LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

Query: 400 IAFVRKQMRH 409
                    +
Sbjct: 124 YQRCMMAQYN 133

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 17/99 (17%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEY-----GKGKLGKALHFTGSHFHRIIPQFMIQGG 79
           G + I LF +  PKT  NF  L  G                 + G+ FHR+I  FMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 80  DITNFNGTGGESIYGPCFEDENFKLKGIYPKNKY--PGI 116
           D T   G GG    G  F DE       +P+ ++  P +
Sbjct: 93  DPTG-TGRGGP---GYKFADE------FHPELQFDKPYL 121

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 81.1 bits (201), Expect = 8e-19
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GNE  K          ++ A   + +Y ++           Y+     N AA   K 
Sbjct: 16  KTEGNEQMK-------VENFEAA---VHFYGKAIELNPANA--VYFC----NRAAAYSKL 59

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
             Y  A+  C+  + ++P   KA  R G A  S+N   + +  Y++AL+L P+++     
Sbjct: 60  GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

Query: 400 IAFVRKQMR 408
           +     ++R
Sbjct: 120 LKIAELKLR 128

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GN  F         RKY +A      Y ++ ++        YYT    N A   LK 
Sbjct: 13  KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 56

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
           +  ++A+  C   L ++  +VKA F  G+ Q+ M ++++ + + ++A  L    +    +
Sbjct: 57  QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 79.5 bits (197), Expect = 2e-18
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GN+                A   ++ Y+++       H    Y+    N +A   K 
Sbjct: 8   KEKGNKALS-------VGNIDDA---LQCYSEAIKLDPHNH--VLYS----NRSAAYAKK 51

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
             Y++A       + ++P+  K   R+  A   +N FE+  + YE+ L    N+ Q+ + 
Sbjct: 52  GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111

Query: 400 IAFVRKQ 406
           +  +  +
Sbjct: 112 LQNMEAR 118

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           +  G EYF        +  +  A   +K Y +   +  +      Y+    N AA   K 
Sbjct: 8   RLEGKEYFT-------KSDWPNA---VKAYTEMIKRAPEDA--RGYS----NRAAALAKL 51

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQIL 397
            ++  AI  C+  +  +PN V+A  R+  AQ+++  +   L+  + A       N+    
Sbjct: 52  MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111

Query: 398 KEIAFVRKQMR 408
           +EI  +  +  
Sbjct: 112 REIDQLYYKAS 122

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 81.1 bits (200), Expect = 2e-17
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GN  F         RKY +A      Y ++ ++        YYT    N A   LK 
Sbjct: 8   KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 51

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
           +  ++A+  C   L ++  +VKA F  G+ Q+ M ++++ + + ++A  L    +    +
Sbjct: 52  QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

Query: 400 IAFVRKQMRHHLNLEKMTYARMFQ 423
                 ++        +   R+ Q
Sbjct: 112 DIPSALRIAKKKRWNSIEERRIHQ 135

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 77.1 bits (190), Expect = 5e-17
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 18/131 (13%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K+ GN           +++Y KA   I  Y Q+ S         Y +    N AA     
Sbjct: 15  KSEGNAAMA-------RKEYSKA---IDLYTQALSIAPANP--IYLS----NRAAAYSAS 58

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQIL 397
             +++A    +   +++P   KA  R G A+  M +++   + YE+ ++   N     + 
Sbjct: 59  GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118

Query: 398 KEIAFVRKQMR 408
           + +   ++++ 
Sbjct: 119 RGLETTKRKIE 129

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
             S  E  +  R  DA  KY+  ++             +     Y   +   +     K 
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKT------------EPSVAEYTVRSKERICHCFSKD 285

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
           +    AI +C ++L MEP+NV AL  R  A +    +++ +QDYE A +   NDQQI + 
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345

Query: 400 IAFVRKQMR 408
           +   ++ ++
Sbjct: 346 LEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 16/141 (11%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
              G +     ++ DA  ++  AV                        A    A V L  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAM 50

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
              K A+     ++ ++ +   A  +RG   +     ++   D+++ L   P++Q+  + 
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110

Query: 400 IAFVRKQMRHHLNLEKMTYAR 420
            + + K         +   A 
Sbjct: 111 ESQLVKADEMQRLRSQALDAF 131

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 33/163 (20%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR--------------------YIKWYNQSQSKTQQKH 320
             G+   K  ++ +A+  +KK ++                      +  +Q+        
Sbjct: 76  QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135

Query: 321 FR---SYYTAAL----------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 367
           +    ++    L             A   +K    ++AI+       ++ +N +A ++  
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
                + + E  L +  + L L  + ++       V+K  +  
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 12/80 (15%), Positives = 28/80 (35%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
             L +    L       A++     +  +P+N  A +RR    ++M   +  L D  + +
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64

Query: 388 DLLPNDQQILKEIAFVRKQM 407
            L  +      +   +  + 
Sbjct: 65  ALKMDFTAARLQRGHLLLKQ 84

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 11/126 (8%), Positives = 36/126 (28%), Gaps = 28/126 (22%)

Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
              + K      A    K A +                 +S  T A   ++ +  +   +
Sbjct: 161 AECFIKEGEPRKAISDLKAASK----------------LKSDNTEAFYKISTLYYQLGDH 204

Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQ------------VSMNNFEQGLQDYEQALDLL 390
           + +++   + L ++ ++ +      + +            +    +      YE  +   
Sbjct: 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264

Query: 391 PNDQQI 396
           P+  + 
Sbjct: 265 PSVAEY 270

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 12/130 (9%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
             S  E  +  R  DA  KY+  ++             +     Y   +   +     K 
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKT------------EPSIAEYTVRSKERICHCFSKD 308

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
           +    AI +C ++L MEP+NV AL  R  A +    +++ +QDYE A +   NDQQI + 
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368

Query: 400 IAFVRKQMRH 409
           +   ++ ++ 
Sbjct: 369 LEKAQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 20/164 (12%), Positives = 53/164 (32%), Gaps = 24/164 (14%)

Query: 258 YVEAENDKPLVLNQMEDVIRTI------KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ 311
           +    +   + L       +++         G +     ++ DA  ++  AV        
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG------ 55

Query: 312 SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQV 371
                           A    A V L     K A+     ++ ++ +   A  +RG   +
Sbjct: 56  ----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105

Query: 372 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK--QMRHHLNL 413
                ++   D+++ L   P++ +  +  + + K  +M+   + 
Sbjct: 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G+   K  ++ +A+  +KK ++        + + Q +  +S     L + A       
Sbjct: 99  QRGHLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
            Y  AI   D IL +   + +    R    +      + + D + A  L  ++ +   +I
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217

Query: 401 AFVRKQMRHH 410
           + +  Q+  H
Sbjct: 218 STLYYQLGDH 227

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 11/126 (8%), Positives = 35/126 (27%), Gaps = 28/126 (22%)

Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
              + K      A    K A +                 ++  T A   ++ +  +   +
Sbjct: 184 AECFIKEGEPRKAISDLKAASK----------------LKNDNTEAFYKISTLYYQLGDH 227

Query: 343 KRAINLCDDILLMEPNNVKA------------LFRRGRAQVSMNNFEQGLQDYEQALDLL 390
           + +++   + L ++ ++ +             L       +    +      YE  +   
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287

Query: 391 PNDQQI 396
           P+  + 
Sbjct: 288 PSIAEY 293

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 72.6 bits (179), Expect = 2e-15
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
           G +VI+ F    P+T +NF   C          +   +  + FHR+I  FMIQGG    F
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGG---F 55

Query: 85  NGTGGESIYGPCFEDE 100
                +       ++E
Sbjct: 56  EPGMKQKATKEPIKNE 71

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           +K   N+YFK     +A + Y +A   I+    +           YY     N +   L+
Sbjct: 9   LKTQANDYFKAKDYENAIKFYSQA---IELNPSNAI---------YYG----NRSLAYLR 52

Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            + Y  A+      + ++   +K  +RR  + +++  F   L+DYE  + + P+D+    
Sbjct: 53  TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112

Query: 399 EIAFVRKQMR 408
           +     K ++
Sbjct: 113 KYQECNKIVK 122

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 70.0 bits (172), Expect = 7e-15
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 24/136 (17%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GN+ +K       ++ +  A   +K Y++++         +Y T    N AAV  + 
Sbjct: 8   KELGNDAYK-------KKDFDTA---LKHYDKAKELDPTNM--TYIT----NQAAVYFEK 51

Query: 340 KAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
             Y +   LC+  + +   N        KA  R G +      ++  +  Y ++L     
Sbjct: 52  GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHR 110

Query: 393 DQQILKEIAFVRKQMR 408
              +LK+     K ++
Sbjct: 111 TPDVLKKCQQAEKILK 126

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 71.0 bits (175), Expect = 7e-15
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 13/76 (17%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
           G + +EL +   PKT ENF         KG      H+ G+ FHR+I  FMIQGG    F
Sbjct: 13  GVIKLELDEAKAPKTVENFLNYVK----KG------HYDGTIFHRVINGFMIQGGG---F 59

Query: 85  NGTGGESIYGPCFEDE 100
                +        +E
Sbjct: 60  EPGLKQKPTDAPIANE 75

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 71.1 bits (175), Expect = 8e-15
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 18/93 (19%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
           +G+  V L  S G      + +EL K   P + +NF               +  +  + F
Sbjct: 2   KGDPHVLLTTSAGN-----IELELDKQKAPVSVQNFVDYV----------NSGFYNNTTF 46

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 100
           HR+IP FMIQGG    F     +    P  ++E
Sbjct: 47  HRVIPGFMIQGGG---FTEQMQQKKPNPPIKNE 76

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 24/143 (16%)

Query: 270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAAL 329
           N M D     K+ GN  +K       Q+ ++KA      Y+++                 
Sbjct: 2   NAMTDAAIAEKDLGNAAYK-------QKDFEKA---HVHYDKAIE------LDPSNITFY 45

Query: 330 LNMAAVQLKFKAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQD 382
            N AAV  + K +   +  C+  + +            KA+ R G A    N+    +Q 
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 383 YEQALDLLPNDQQILKEIAFVRK 405
           + ++L     D +++K++  + K
Sbjct: 106 FHRSLS-EFRDPELVKKVKELEK 127

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           +  G EYF  +   +A + Y + ++                          N AA   K 
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIK----------------RAPEDARGYSNRAAALAKL 186

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--IL 397
            ++  AI  C+  +  +PN V+A  R+  AQ+++  +   L+  + A             
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 398 KEIA 401
           +EI 
Sbjct: 247 REID 250

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 15/148 (10%), Positives = 45/148 (30%), Gaps = 17/148 (11%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 329
           K     + ++   +      KK +      +  +  +   T+ ++         A     
Sbjct: 76  KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135

Query: 330 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
                              +  A+    +++   P + +    R  A   + +F + + D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195

Query: 383 YEQALDLLPNDQQILKEIAFVRKQMRHH 410
             +A++  PN  +     A  +  ++ +
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQIAVKEY 223

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 17/115 (14%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GN+++K  +  +A   Y KA                K           N AA + + 
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWEL------------HKDITYLN-----NRAAAEYEK 51

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394
             Y+ AI+  +D +              ++   + N    L D ++ ++      
Sbjct: 52  GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 17/120 (14%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GN  FK       Q  Y++A   +  Y+Q  +   Q      Y+    N A   +K 
Sbjct: 8   KEQGNSLFK-------QGLYREA---VHCYDQLITAQPQNP--VGYS----NKAMALIKL 51

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
             Y +AI +C   L           R    Q  +   +  +   +  +  +    +    
Sbjct: 52  GEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 16/139 (11%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
              +    +      +   ++ +                     +  A+  +  V+   +
Sbjct: 28  MLADAELGMGDTTAGEMAVQRGLA----------------LHPGHPEAVARLGRVRWTQQ 71

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
            +  A  L        P +       G A       E     Y +A  LLP +  I  ++
Sbjct: 72  RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

Query: 401 AFVRKQMRHHLNLEKMTYA 419
              R+++     L+ ++  
Sbjct: 132 LNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 27/86 (31%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
              A L +A  +L               L + P + +A+ R GR + +     +     +
Sbjct: 22  DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81

Query: 385 QALDLLPNDQQILKEIAFVRKQMRHH 410
           QA D  P    I   +    +     
Sbjct: 82  QASDAAPEHPGIALWLGHALEDAGQA 107

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 401
             R +      +   P +  A      A++ M +   G    ++ L L P   + +  + 
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 402 FVRKQMRHH 410
            VR   + H
Sbjct: 65  RVRWTQQRH 73

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 16/131 (12%), Positives = 52/131 (39%), Gaps = 16/131 (12%)

Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
           +    +D++  I +   +++   R+ +A+  ++    Y                  Y   
Sbjct: 28  INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVD 71

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
            ++ +AA+    + +++A +L      +  N+   +F  G+ Q+ +    +  + +E  +
Sbjct: 72  YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131

Query: 388 DLLPNDQQILK 398
               +++  +K
Sbjct: 132 QHSNDEKLKIK 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 11/83 (13%), Positives = 24/83 (28%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
            + + A         + A      + + +  NV  +            F+Q    Y  A 
Sbjct: 38  DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97

Query: 388 DLLPNDQQILKEIAFVRKQMRHH 410
            L  ND   +      + +++  
Sbjct: 98  ALGKNDYTPVFHTGQCQLRLKAP 120

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 23/137 (16%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF- 339
             G ++ +L  +  A    + +                     Y    L  +  V     
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYA----------------LFQYDPLLLNELGVVAFNKS 489

Query: 340 ------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
                   ++ A+ L       E          G A   +  ++  +    Q L L  ND
Sbjct: 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549

Query: 394 QQILKEIAFVRKQMRHH 410
             +   IA V    +  
Sbjct: 550 ANVHTAIALVYLHKKIP 566

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G   F  + M  A   ++ A+  +K    ++           + A   N+     K K
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------WAATWANLGHAYRKLK 530

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 395
            Y  AI+  +  LL+  N+           +        +    ++L + PN+  
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 20/135 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 327
             G  Y  +N++ +A+R + K+   +       W   + S   +        +Y TA   
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSST-MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436

Query: 328 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
                   L +    ++      A         +   +   L   G    + ++ +  + 
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496

Query: 382 DYEQALDLLPNDQQI 396
            ++ AL L+   Q  
Sbjct: 497 HFQNALLLVKKTQSN 511

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 14/151 (9%), Positives = 39/151 (25%), Gaps = 21/151 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR----YIKWYN-----------------QSQSKTQQK 319
             G  Y  L+    A+  YK+A+       + ++                    + +   
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264

Query: 320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
              + +  +L  +   +   +   R        +     +   L  +       + F   
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324

Query: 380 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
           L    + L++ P +  +         +    
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEK 355

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 10/108 (9%)

Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
           Y         + + ++A  Y+   N  +            +  LL  A        +   
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEK----------SSDLLLCKADTLFVRSRFIDV 324

Query: 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
           + +   IL ++P N+        +        +        +D  P  
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 21/201 (10%), Positives = 51/201 (25%), Gaps = 12/201 (5%)

Query: 193 EAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGV 252
            AK  Y + AL       E   +L       ++  +  DLV K                +
Sbjct: 218 RAKECYKE-ALMVDAKCYEAFDQL--VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274

Query: 253 AREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS 312
                   +  D+          I  ++ S +           + ++      +    + 
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV---LAITTKI 331

Query: 313 QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS 372
                      Y         A   +     +   + +D++   P         G   + 
Sbjct: 332 LEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385

Query: 373 MNNFEQGLQDYEQALDLLPND 393
           +N   +  + + ++  + P  
Sbjct: 386 VNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 15/131 (11%), Positives = 25/131 (19%), Gaps = 18/131 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAV-----RYIKWYNQSQSKTQQKHF-------------R 322
              +  F  +R  D      K +         +     S  +                  
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369

Query: 323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
                  L +    L       A         M+P    A      +       +Q +  
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429

Query: 383 YEQALDLLPND 393
           Y  A  L    
Sbjct: 430 YTTAARLFQGT 440

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 15/150 (10%), Positives = 40/150 (26%), Gaps = 18/150 (12%)

Query: 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF--------- 321
           +  I +       L  +        +A        +   +    K   +           
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165

Query: 322 ----RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
                     A+ +    +   +  +R + +      + P  V A+   G  + ++   +
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225

Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
           + L    QA  L P     +      ++ +
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 17/159 (10%), Positives = 41/159 (25%), Gaps = 22/159 (13%)

Query: 258 YVEAEND--KPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN 310
                    +   L      +  I +       L  +        +A        +   +
Sbjct: 326 VQRLLPVLCQAHGLTP--QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383

Query: 311 QSQSKTQQKHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357
               K   +  +                  A+ +    +   +  +R + +      + P
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443

Query: 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
             V A+   G  + ++ +    L   + AL  L ND  +
Sbjct: 444 QQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 18/147 (12%)

Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY----- 324
           I ++G     L  +        +A        +   +    K   +  +           
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236

Query: 325 ----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
                  A+ +    +   +  +R + +      + P  V A+      + ++   ++ L
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL 296

Query: 381 QDYEQALDLLPNDQQILKEIAFVRKQM 407
               QA  L P     +      ++ +
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQAL 323

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 18/148 (12%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY------- 324
           ++G     L  +        +A        +   + S  K   +  +             
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 325 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
                A+ +    +   +  +R + +      + P  V A+      + ++   ++ L  
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

Query: 383 YEQALDLLPNDQQILKEIAFVRKQMRHH 410
             QA  L P     +      ++ +   
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETV 394

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 18/144 (12%)

Query: 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS 323
            +   L      +  I ++G     L  +        +A                     
Sbjct: 300 CQAHGLTP--QQVVAIASNGGGKQALETVQRLLPVLCQAHG----------------LTP 341

Query: 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 383
               A+ +    +   +  +R + +      + P  V A+   G  + ++   ++ L   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 384 EQALDLLPNDQQILKEIAFVRKQM 407
            QA  L P     +      ++ +
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQAL 425

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 8e-09
 Identities = 10/86 (11%), Positives = 28/86 (32%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
              A+ +    +   +  +R + +      + P  V A+      + ++   ++ L    
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 385 QALDLLPNDQQILKEIAFVRKQMRHH 410
           QA  L P     +      ++ +   
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETV 156

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 17/151 (11%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
           + E  +         E +  +++++G   F  N    A    KKA+              
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------------ 266

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
                SY       MA +           N  D  L ++ NN    + RG+    + N++
Sbjct: 267 FPRVNSYI-----YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321

Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQMR 408
           Q  +D+++A +L P +     ++A +  +  
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYREN 352

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 20/161 (12%), Positives = 55/161 (34%), Gaps = 28/161 (17%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF----RSY------- 324
                 ++ N+  D +  + +A R            ++  T +  F    + Y       
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402

Query: 325 --YTAALLNMAAVQLKFKA---------YKRAINLCDDILLMEPNNVKALFRRGRAQVSM 373
                  + +A +  K            +  A NL +    ++P + +A     + ++  
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462

Query: 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 414
            + ++ +  +E++ DL    ++ L+ I F  +  +    + 
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITF-AEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K+ GN++F+  +  DA + Y  A+             ++            N++A  +  
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDP------VFYSNLSACYVSV 52

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQI 396
              K+ + +    L ++P+  K L RR  A   +  F   + D    +L+   ND  I
Sbjct: 53  GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 16/113 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           + G   F L     A + + KA                           + +A +  +  
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKEL----------------DPENIFPYIQLACLAYREN 352

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
            +     L  +     P   +            N+F++ L+ Y+ A++L    
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
           Y  AL +      + K Y  AI   +  L ++ + V          VS+ + ++ ++   
Sbjct: 5   YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63

Query: 385 QALDLLPNDQQILKEIAFVRKQM 407
           +AL+L P+  ++L   A   + +
Sbjct: 64  KALELKPDYSKVLLRRASANEGL 86

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G   F+      A++ +  A+  IK      +  +       +   L N+  V  K K
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-------WEPLLNNLGHVCRKLK 250

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
            Y  A++     L++ P N       G     M NFE  +  +  AL L  +D   +  +
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310

Query: 401 AFV 403
              
Sbjct: 311 GHC 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 27/154 (17%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN-----QSQSKTQQ--KHFR------ 322
             G+ +   +    A   Y  A +     ++            + ++   + F       
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

Query: 323 SYYTAALLNMAAVQLK-------FKAYKRAINLCDDIL--LMEPNNVKALFRRGRAQVSM 373
                 +  +  V  +        K +  A+     I   +        L   G     +
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

Query: 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
             + + L  + QAL L+P +      I ++   M
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 21/134 (15%)

Query: 281 NSGNEYFKLNRMHD-AQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA-- 327
             G  Y  +   ++ A+R   KA   ++      W     S   +        +Y+TA  
Sbjct: 95  AVGCYYLMVGHKNEHARRYLSKATT-LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153

Query: 328 -------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 380
                   +L +          K A       L + P +   +   G        ++   
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213

Query: 381 QDYEQALDLLPNDQ 394
           + +  AL+ +    
Sbjct: 214 KWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 11/153 (7%), Positives = 37/153 (24%), Gaps = 19/153 (12%)

Query: 260 EAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAV-----RYIKWYNQSQS 314
            +E   P  ++ +++ +  + +    ++         +     +               +
Sbjct: 6   PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65

Query: 315 KTQQKH----FRSYYTA---------ALLNMAAV-QLKFKAYKRAINLCDDILLMEPNNV 360
             +       F   +           +   +     +     + A         +E    
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125

Query: 361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
            A    G +    +  +Q +  Y  A  L+   
Sbjct: 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC 158

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G   ++  +  DAQ+ ++                       Y     L + A +    
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCML----------------DHYDARYFLGLGACRQSLG 66

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
            Y++A+       LM+ N  +  F      + + + +     +  A  L    
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 13/83 (15%), Positives = 30/83 (36%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
            L  +   Q +   +  A  +   + +++  + +     G  + S+  +EQ LQ Y    
Sbjct: 20  QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79

Query: 388 DLLPNDQQILKEIAFVRKQMRHH 410
            +  N+ +     A    Q+   
Sbjct: 80  LMDINEPRFPFHAAECHLQLGDL 102

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 28/256 (10%), Positives = 76/256 (29%), Gaps = 26/256 (10%)

Query: 161 VSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKH------YYNQGALEKKRGITEHKK 214
           +S    F       +   N+  + ++     L            +  +L    GI +   
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

Query: 215 KLETGRGK---EISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQ 271
           ++ +       + +     D +++          V           Y    +   +    
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN 331
            E+    +  +G  +F  N + DAQ   ++++                   SY       
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL------------HPTPNSYI-----F 281

Query: 332 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 391
           +A      +  +         + + P      + RG+    + +++   +D+++A  L P
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 392 NDQQILKEIAFVRKQM 407
            +     ++A +  + 
Sbjct: 342 ENVYPYIQLACLLYKQ 357

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 1/134 (0%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
                         A ++Y  A R  +   +          ++   A   +    QL  +
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
            +  AI L      ++P + +A     + ++ M   ++ ++ +E +  L     + L+  
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502

Query: 401 AFVRKQMRHHLNLE 414
            F  +  +    L 
Sbjct: 503 TF-AEAAKIQKRLR 515

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 255 EVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 314
           E    + +   P   +Q +     +KN GN +F     ++A + Y+ A+           
Sbjct: 7   EPDIAQLKGLSP---SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI----------- 52

Query: 315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374
           +        Y      N++A  +     ++ I      L ++P++ KAL RR  A  S+ 
Sbjct: 53  ELDPNEPVFYS-----NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107

Query: 375 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 425
           NF   + D    L L  +      E    R   +  + +     ++    G
Sbjct: 108 NFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 5/110 (4%)

Query: 298 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357
            +           Q +  +  +  R  Y   L N        K +  AI      + ++P
Sbjct: 2   SHMNG---EPDIAQLKGLSPSQ--RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP 56

Query: 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
           N            +S  + E+ ++   +AL++ P+  + L   A   + +
Sbjct: 57  NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 16/144 (11%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           + G  YF L    +A+  ++KA                           + +A +  K  
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSL----------------NPENVYPYIQLACLLYKQG 358

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
            +  +    ++  L  P   +             +F+  ++ Y+ A  L    ++I   I
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418

Query: 401 AFVRKQMRHHLNLEKMTYARMFQN 424
             +  +             ++ + 
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEE 442

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 19/123 (15%), Positives = 39/123 (31%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
              +   +  +   A   +++ +       +    T         +     +A    K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
            Y +A     ++L   PNNV  L      QV     +  L+ YE+ L L  ++      +
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 401 AFV 403
              
Sbjct: 129 GNY 131

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA-AVQLKF 339
                     +  DA R Y+K ++                  +   AA + +     L  
Sbjct: 93  ACAEMQVCRGQEKDALRMYEKILQ----------------LEADNLAANIFLGNYYYLTA 136

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQIL 397
           +  K+ +      L        A +R G +++    +E+     ++ +   P+   Q+ L
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196

Query: 398 KEIAFVRKQM 407
            +I  + K++
Sbjct: 197 DKILRIEKEV 206

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 17/144 (11%)

Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
           V    E   +        Y K      A   YK+ ++                       
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK----------------APNNVD 89

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQA 386
            L   A +Q+     K A+ + + IL +E +N+ A    G    ++    ++ L+   + 
Sbjct: 90  CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149

Query: 387 LDLLPNDQQILKEIAFVRKQMRHH 410
           L      Q         +     +
Sbjct: 150 LSSPTKMQYARYRDGLSKLFTTRY 173

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 16/96 (16%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR----------------GRAQV 371
            +L   +  ++     +A++     + +  +  +  +                    A  
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 372 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
              N+++    Y++ L   PN+   L+  A ++   
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 16/129 (12%)

Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
           G  Y   N   ++   Y++A++          + +     +     L   A         
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQL---------RGENAELYAALATVLYYQA----SQHMT 97

Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKE 399
            +   + D  L ++ N + AL           N+ Q ++ +++ +DL        Q+++ 
Sbjct: 98  AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157

Query: 400 IAFVRKQMR 408
           I   +   R
Sbjct: 158 INMAKLLQR 166

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 13/77 (16%), Positives = 26/77 (33%)

Query: 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
               +        +  +  +    D +   P N +     G   +  N++   L  Y QA
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 387 LDLLPNDQQILKEIAFV 403
           L L   + ++   +A V
Sbjct: 71  LQLRGENAELYAALATV 87

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 17/152 (11%), Positives = 44/152 (28%), Gaps = 20/152 (13%)

Query: 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQ 318
            +   L    D +  I ++      L  +        +A        +   +    K   
Sbjct: 250 CQAHGLPP--DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQAL 307

Query: 319 KHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR 365
           +  +                  A+ +    +   +  +R + +      + P+ V A+  
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 366 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
            G  + ++   ++ L    QA  L P+    +
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 399

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 17/151 (11%), Positives = 43/151 (28%), Gaps = 18/151 (11%)

Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316
           +   A    PL L      +  I ++      L  +        +A              
Sbjct: 175 ASRNALTGAPLNLTP--AQVVAIASNNGGKQALETVQRLLPVLCQAHG------------ 220

Query: 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
                      A+ +    +   +  +R + +      + P+ V A+      + ++   
Sbjct: 221 ----LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276

Query: 377 EQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
           ++ L    QA  L P+    +      ++ +
Sbjct: 277 QRLLPVLCQAHGLTPDQVVAIASHGGGKQAL 307

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 12/145 (8%), Positives = 38/145 (26%), Gaps = 18/145 (12%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYI-----KWYNQSQSKTQQKHFR----SY------- 324
           ++      L  +        +A            +    K   +  +             
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 325 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
                A+ +    +   +  +R + +      +    V A+      + ++   ++ L  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 383 YEQALDLLPNDQQILKEIAFVRKQM 407
             QA  L P+    +      ++ +
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQAL 748

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 17/165 (10%), Positives = 46/165 (27%), Gaps = 20/165 (12%)

Query: 261 AENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSK 315
               +   L    D +  I ++G     L  +        +A        +   +    K
Sbjct: 518 PVLCQAHGLTP--DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 575

Query: 316 TQQKHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 362
              +  +                  A+ +    +   +  +R + +      + P  V A
Sbjct: 576 QALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635

Query: 363 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
           +      + ++   ++ L    QA  L P+    +      ++ +
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 17/172 (9%), Positives = 45/172 (26%), Gaps = 25/172 (14%)

Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQ 311
              +A    P         +  I +       L  M        +A        +   + 
Sbjct: 214 VLCQAHGLTP-------AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASN 266

Query: 312 SQSKTQQKHFR----SY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN 358
              K   +  +                  A+ +    +   +  +R + +      + P+
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326

Query: 359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
            V A+      + ++   ++ L    QA  L P+    +      ++ +   
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 19/171 (11%), Positives = 47/171 (27%), Gaps = 24/171 (14%)

Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQ 311
              +A    P       D +  I ++G     L  +        +A        +   + 
Sbjct: 350 VLCQAHGLTP-------DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 402

Query: 312 SQSKTQ---QKHFRSY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359
              +     Q+                 A+ +    +   +  +R + +      + P  
Sbjct: 403 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
           V A+      + ++   +Q L    QA  L P+    +      ++ +   
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATV 513

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 23/141 (16%)

Query: 257 SYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT 316
              +A    P       D +  I ++G     L  +        +A              
Sbjct: 655 VLCQAHGLTP-------DQVVAIASNGGGKQALETVQRLLPVLCQAHG------------ 695

Query: 317 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
                      A+ +    +   +  +R + +      + P+ V A+   G  + ++   
Sbjct: 696 ----LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 751

Query: 377 EQGLQDYEQALDLLPNDQQIL 397
           ++ L    QA  L P     +
Sbjct: 752 QRLLPVLCQAHGLTPAQVVAI 772

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 18/144 (12%)

Query: 264 DKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS 323
            +   L      +  I +       L  +        +A                     
Sbjct: 453 CQTHGLTP--AQVVAIASHDGGKQALETVQQLLPVLCQAHG----------------LTP 494

Query: 324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 383
               A+ +    +      +R + +      + P+ V A+   G  + ++   ++ L   
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 554

Query: 384 EQALDLLPNDQQILKEIAFVRKQM 407
            QA  L P+    +      ++ +
Sbjct: 555 CQAHGLTPDQVVAIASNGGGKQAL 578

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 10/117 (8%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           +             A    ++ +             Q          A+ +    +   +
Sbjct: 835 DQVVAIASNIGGKQALETVQRLL---------PVLCQDHGLTPDQVVAIASNIGGKQALE 885

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
             +R + +      +  + V A+   G  Q ++   ++ L    Q   L P+    +
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASNGGKQ-ALETVQRLLPVLCQDHGLTPDQVVAI 941

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 11/88 (12%), Positives = 25/88 (28%)

Query: 320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
              +     +     V      +     L    L + P  V A+      + ++   ++ 
Sbjct: 152 QLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRL 211

Query: 380 LQDYEQALDLLPNDQQILKEIAFVRKQM 407
           L    QA  L P     +      ++ +
Sbjct: 212 LPVLCQAHGLTPAQVVAIASHDGGKQAL 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 329
              +  ++      A+R   +  R            S    Q +       + T A+   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 330 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 382
                   N+  V  +    + AI      L ++P+ +        A V+  + E  +Q 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 383 YEQALDLLPNDQQILKEIAFVRKQMRHH 410
           Y  AL   P+   +  ++  + K +   
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRL 151

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 18/154 (11%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQS 312
           +  AE     +  Q  D    +    + +F+  R+  +      A++        + N  
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 313 QSKTQQKHF-------------RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 359
               ++                +  +    +N+AA  +     + A+      L   P+ 
Sbjct: 75  NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

Query: 360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
                  G    ++   E+    Y +A++  PN 
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.4 bits (137), Expect = 6e-09
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 20/146 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
           N    Y++   +  A   Y++A+  ++      + N + +  ++         Y      
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
              +  +L N+A ++ +    + A+ L    L + P    A              ++ L 
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

Query: 382 DYEQALDLLPNDQQILKEIAFVRKQM 407
            Y++A+ + P        +    K+M
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
           N GN   +      A   Y +A+  +         N +    +Q        +Y      
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
              +  A  N+A    +  +   A +  +  L + P +  +L      +    N E+ ++
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 382 DYEQALDLLPNDQQILKEIAFVRKQM 407
            Y +AL++ P        +A V +Q 
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQ 352

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 327
           N GN Y +  ++ +A   Y+ A+R +K      + N + +           ++Y +A   
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130

Query: 328 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
                    ++  +       + A       +  +PN   A    G    +       + 
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190

Query: 382 DYEQALDLLPND 393
            +E+A+ L PN 
Sbjct: 191 HFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
           N          M  A + Y  A++           +                 Y      
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164

Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
              +  A  N+  V         AI+  +  + ++PN + A    G        F++ + 
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224

Query: 382 DYEQALDLLPNDQQILKEIAFVRKQMRHH 410
            Y +AL L PN   +   +A V  +    
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLI 253

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 11/79 (13%), Positives = 25/79 (31%)

Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
            + +A  + +   ++ A   C  +   EP+N   L             ++       A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 389 LLPNDQQILKEIAFVRKQM 407
             P   +    +  V K+ 
Sbjct: 62  QNPLLAEAYSNLGNVYKER 80

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 20/132 (15%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
           + GN    L R+ +A+  Y KA+   +      W N       Q         +      
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198

Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
              +  A +N+  V  + + + RA+      L + PN+                 +  + 
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 382 DYEQALDLLPND 393
            Y +A++L P+ 
Sbjct: 259 TYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 324
           N G  +     +  A   ++KAV  +       + N      + + F     +Y      
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
              +     N+A V  +      AI+     + ++P+   A      A     +  +   
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

Query: 382 DYEQALDLLPND 393
            Y  AL L P  
Sbjct: 293 CYNTALRLCPTH 304

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 17/136 (12%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 335
             G  Y+       A   + K +      YI +  ++++   Q        A        
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA-------- 198

Query: 336 QLKFKAYKRAINLC-DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 394
                 Y++ I +C       +   ++A            +  +    ++  L L P ++
Sbjct: 199 ---KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

Query: 395 QILKEIAFVRKQMRHH 410
           + +  +    +   HH
Sbjct: 256 KAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 13/113 (11%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
                Y++L        KY  A + I+ Y    +           +A       + +K  
Sbjct: 42  RRAVCYYELA-------KYDLAQKDIETYFSKVNA------TKAKSADFEYYGKILMKKG 88

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
               AI      +  +   +    + G    +  NF   +Q  E+ +     D
Sbjct: 89  QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 19/122 (15%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
              G+ ++       A +  +K +R                  +        +       
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIR----------------PTTTDPKVFYELGQAYYYN 155

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN---FEQGLQDYEQALDLLPNDQQI 396
           K Y +A +    +L ++PN       R RA  + +           YE+ +++       
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

Query: 397 LK 398
            K
Sbjct: 216 YK 217

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 15/130 (11%), Positives = 29/130 (22%), Gaps = 19/130 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
              +  FK N   +A   + K               +      Y        A    +  
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLE-----------AKKYNSPYIYN-----RRAVCYYELA 51

Query: 341 AYKRAINLCDD---ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 397
            Y  A    +     +             G+  +        +Q Y+ A+D       + 
Sbjct: 52  KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 398 KEIAFVRKQM 407
            +I       
Sbjct: 112 GQIGSYFYNK 121

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD---YE 384
                A    K   Y  AI + + +   + N+     RR      +  ++   +D   Y 
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 385 QALDLLPND 393
             ++     
Sbjct: 65  SKVNATKAK 73

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N  N   +   + +A R Y+KA+                     + AA  N+A+V  +  
Sbjct: 14  NLANIKREQGNIEEAVRLYRKALEV----------------FPEFAAAHSNLASVLQQQG 57

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
             + A+    + + + P    A    G     M + +  LQ Y +A+ + P        +
Sbjct: 58  KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117

Query: 401 AFVRKQMRHH 410
           A + K   + 
Sbjct: 118 ASIHKDSGNI 127

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N  +   +  ++ +A   YK+A+R                    +  A  NM     + +
Sbjct: 48  NLASVLQQQGKLQEALMHYKEAIR----------------ISPTFADAYSNMGNTLKEMQ 91

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
             + A+      + + P    A            N  + +  Y  AL L P+       +
Sbjct: 92  DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151

Query: 401 AFVRKQM 407
           A   + +
Sbjct: 152 AHCLQIV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 14/86 (16%), Positives = 32/86 (37%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
           +  +L N+A ++ +    + A+ L    L + P    A              ++ L  Y+
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 385 QALDLLPNDQQILKEIAFVRKQMRHH 410
           +A+ + P        +    K+M+  
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDV 93

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 11/76 (14%)

Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGD 80
             +     I L  +  P TA NF  L    +          + G    R    F++Q GD
Sbjct: 184 NIEDCVFRIVLDGYNAPVTAGNFVDLVERHF----------YDGMEIQR-SDGFVVQTGD 232

Query: 81  ITNFNGTGGESIYGPC 96
                    +      
Sbjct: 233 PEGPAEGFIDPSTEKT 248

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 30/188 (15%)

Query: 244 GCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAV 303
           G V +G  +  + + ++ +  +        +        G  Y +      A+   +KA+
Sbjct: 13  GLVPRGSHMG-DQNPLKTDKGRD-------EARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 304 RYIK------WYN-----QSQSKTQQ--KHFR------SYYTAALLNMAAVQLKFKAYKR 344
             I               Q++ + +   + +R      S     L N      + K Y+ 
Sbjct: 65  E-IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123

Query: 345 AINLCDDIL--LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF 402
           A     +     + P   +     G   + M    Q  + +E++L L  N   +  E+A 
Sbjct: 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183

Query: 403 VRKQMRHH 410
           +  + R +
Sbjct: 184 LLYKEREY 191

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 14/113 (12%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N G   ++  R  +A ++  +A               Q       +    N+  V L+ K
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEAS--------------QDTLYPERSRVFENLGLVSLQMK 155

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
              +A    +  L +  N                 +    Q Y+        +
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 25/210 (11%), Positives = 63/210 (30%), Gaps = 23/210 (10%)

Query: 225 SRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGN 284
           S   +         +      +  G  + R     + E +   VL +++ ++  +    +
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRD 62

Query: 285 EYFKLN-------RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 337
            YF+ +       +  D Q + +K    ++   +    + Q   ++              
Sbjct: 63  SYFETHSVEDAGRKQQDVQEEMEKT---LQQMEEVL-GSAQVEAQALM-----LKGKALN 113

Query: 338 KFKAY-KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-- 394
               Y   A  L    + +EP  V+A  + G       +       +  AL    N    
Sbjct: 114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173

Query: 395 ----QILKEIAFVRKQMRHHLNLEKMTYAR 420
                +L+++            ++ +  A+
Sbjct: 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 18/143 (12%)

Query: 257 SYVEAENDKP--LVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWY 309
            +  A       + L  +  V+R ++   +       + D+ R+ K AV+        WY
Sbjct: 159 CFSGALTHCKNKVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY 217

Query: 310 NQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA 369
               +          Y +   N        +    A    + +     +N      R   
Sbjct: 218 ILGNA----------YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267

Query: 370 QVSMNNFEQGLQDYEQALDLLPN 392
                ++ + L+ + QA  L P 
Sbjct: 268 HKYEESYGEALEGFSQAAALDPA 290

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 20/149 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 324
            +GN Y       +A+  ++KA+R         +Y       + +  +            
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEKALR-AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154

Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
               T A                A++    +   +P +  A +  G       N E+ L+
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214

Query: 382 DYEQALDLLPNDQQILKEIAFVRKQMRHH 410
             ++A+D+ P+    L     +     HH
Sbjct: 215 MLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 20/132 (15%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 324
           N  N    +N +  A   Y KA+  +       +Y        ++ ++     +      
Sbjct: 62  NFANLLSSVNELERALAFYDKALE-LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 325 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 381
                     +  V +K +  K A+      + +  N+ +A F+ G    +    ++ L 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 382 DYEQALDLLPND 393
            +    +  P  
Sbjct: 181 QFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 16/113 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
                  +      A   + KA+                          +N A +     
Sbjct: 28  QQMGRGSEFGDYEKAAEAFTKAIEE----------------NKEDAIPYINFANLLSSVN 71

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
             +RA+   D  L ++ +   A +  G   V    +++    +E+AL     +
Sbjct: 72  ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 19/116 (16%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N G               +K A   +  ++      Q  H R  +     N+  +    K
Sbjct: 11  NEGVLAADKK-------DWKGA---LDAFS----AVQDPHSRICF-----NIGCMYTILK 51

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
               A       +  + +   A F+RG        ++  ++D ++AL  L  +Q I
Sbjct: 52  NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 34/144 (23%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N G  Y  L  M +A++ + +++                    +   A      +  + +
Sbjct: 42  NIGCMYTILKNMTEAEKAFTRSIN----------------RDKHLAVAYFQRGMLYYQTE 85

Query: 341 AYKRAINLCDD-ILLMEPNNV---------------KALFRRGRAQVSMNNFEQGLQDYE 384
            Y  AI    + ++ +  N +               + L+           +++  +   
Sbjct: 86  KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145

Query: 385 QALDLLPNDQQ--ILKEIAFVRKQ 406
            A  +    +   I K +  V KQ
Sbjct: 146 LATSMKSEPRHSKIDKAMECVWKQ 169

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 15/136 (11%), Positives = 41/136 (30%), Gaps = 18/136 (13%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
           Y +  +        ++D+   +++    +   N   + +     A+              
Sbjct: 122 YEQLGSVNLQADVDIDDL--NVQSEDFFFAAPNEYRECRTLLHAALEM------------ 167

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
                        ++  +      Y  A       + + P++ +   + G    + N  +
Sbjct: 168 ----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223

Query: 378 QGLQDYEQALDLLPND 393
           + L  Y +ALD+ P  
Sbjct: 224 EALDAYNRALDINPGY 239

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 12/69 (17%), Positives = 17/69 (24%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
           Y    +      LK      A    + +    P   +A    G  Q         +    
Sbjct: 20  YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79

Query: 385 QALDLLPND 393
            A  L P D
Sbjct: 80  HARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 16/116 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G    KL  + +A   ++   +              +   ++      ++   Q + +
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQA-----------APEREEAWR-----SLGLTQAENE 69

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
               AI   +   +++P ++        +  + +N    L      L   P  +Q+
Sbjct: 70  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 273 EDVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQK------HFRSYY 325
           E     I++  + + KL   + +  ++  +A  ++  Y+   S T  K            
Sbjct: 4   ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRD 63

Query: 326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 385
                     +L+      A+ L +  +  +P +++A    G  Q         +    +
Sbjct: 64  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

Query: 386 ALDLLPND 393
            L+L P++
Sbjct: 124 CLELKPDN 131

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 20/144 (13%)

Query: 258 YVEAENDKPLVL---NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 314
              A  DK       N + D  +     G    +   + +A   ++ AV           
Sbjct: 44  LTSATYDKGYQFEEENPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAV----------- 91

Query: 315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 374
           +   KH  ++       +   Q + +    AI+     L ++P+N  AL     +  + +
Sbjct: 92  QQDPKHMEAWQ-----YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146

Query: 375 NFEQGLQDYEQALDLLPNDQQILK 398
              Q  +     L   P    ++ 
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVT 170

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 18/137 (13%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
           Y                 +   K         +   + +  +  AVR             
Sbjct: 165 YAHLVTPAEEGAGGAG--LGPSKRILGSLLSDSLFLEVKELFLAAVRL------------ 210

Query: 318 QKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
                +         +  +      Y +A++     L + PN+     + G    + N  
Sbjct: 211 ---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267

Query: 377 EQGLQDYEQALDLLPND 393
           E+ +  Y +AL+L P  
Sbjct: 268 EEAVAAYRRALELQPGY 284

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 298 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 357
              +A   + +Y ++                 L + +       Y++A  +  + +   P
Sbjct: 5   LEAQA---VPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58

Query: 358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
           N+            ++  +EQG++   + +    +D+ I
Sbjct: 59  NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 16/113 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           + G  Y K   +       ++++                            +    ++ +
Sbjct: 47  HLGIAYVKTGAVDRGTELLERSLA----------------DAPDNVKVATVLGLTYVQVQ 90

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
            Y  A+ L   +    P N    FR G A  ++  F++ +  ++ AL L PN+
Sbjct: 91  KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 16/113 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           + G  + K  R   A    ++                     ++     L++    +K  
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYD----------------ADAFDVDVALHLGIAYVKTG 56

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
           A  R   L +  L   P+NVK     G   V +  ++  +    +  +  P +
Sbjct: 57  AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 26/119 (21%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 334
             G   +      ++   ++KA++ +       W  + ++    +     Y  A+     
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAIQ-LDPEESKYWLMKGKALYNLER----YEEAV----- 60

Query: 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
                  Y   IN+ +D       N      +  A   +   E   +  E    L  + 
Sbjct: 61  -----DCYNYVINVIED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 10/67 (14%), Positives = 30/67 (44%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
                  +Q     Y  +I+L +  + ++P   K    +G+A  ++  +E+ +  Y   +
Sbjct: 8   EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67

Query: 388 DLLPNDQ 394
           +++ ++ 
Sbjct: 68  NVIEDEY 74

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 18/150 (12%), Positives = 40/150 (26%), Gaps = 21/150 (14%)

Query: 268 VLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 327
           +     D +  + +     ++     DA   ++                       Y + 
Sbjct: 13  LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSR 56

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
             L + A +     Y  AI+      +M+    +  F      +      +       A 
Sbjct: 57  FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116

Query: 388 DLLPN--DQQILKEIAFVRKQMRHHLNLEK 415
           +L+ N  +   L         M   + L+K
Sbjct: 117 ELIANXPEFXELSTRV---SSMLEAIKLKK 143

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 345
             KL+R+  A+++ KK                +    +    A +++A      +  + A
Sbjct: 140 LLKLDRLDLARKELKKMQDQ-----------DEDATLTQLATAWVSLA---AGGEKLQDA 185

Query: 346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 405
             +  ++       +  L  +    ++   +E      ++ALD      + L  +  + +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245

Query: 406 QM 407
            +
Sbjct: 246 HL 247

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 20/157 (12%), Positives = 36/157 (22%), Gaps = 33/157 (21%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 322
               EY +      A    + A++         W       Q      +  + FR     
Sbjct: 13  QLAMEYMRGQDYRQATASIEDALK-SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71

Query: 323 -SYYTAALLNMAAV---QLK-----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 373
                    N       +L         + +A+          P    A   +G      
Sbjct: 72  KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY-----PTPYIANLNKGICSAKQ 126

Query: 374 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
             F       +++L   P      KE+A  +      
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 18/135 (13%), Positives = 30/135 (22%), Gaps = 23/135 (17%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN----------------QSQSKTQQ 318
                Y  L     AQ  +++A+  IK        N                    K   
Sbjct: 47  VRAEIYQYLKVNDKAQESFRQALS-IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105

Query: 319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 378
                    A LN      K   +  A       L  +P    A     R ++       
Sbjct: 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165

Query: 379 GLQDYEQALDLLPND 393
               +++    +   
Sbjct: 166 ADYYFKKYQSRVEVL 180

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-QSKTQQKHFRSYYTAALLNMAAVQLKF 339
           N         RM  +           + Y ++                    +  +    
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT-----GLGVLFHLS 226

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
             + RAI+  +  L + P +     R G    + +  E+ ++ Y +AL++ P 
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 343
             +   N+    Q     + +         ++   K +   +          +LK     
Sbjct: 32  RNWISENQEAQNQVTVSASEKGY----YFHTENPFKDWPGAF-----EEGLKRLKEGDLP 82

Query: 344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
             I   +  +L +P + +A    G  Q    N +  +   ++ L+L PN+
Sbjct: 83  VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 16/116 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G +  K   +       + A+                   ++       +   Q + +
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAI-----------LQDPGDAEAWQ-----FLGITQAENE 113

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
             + AI      L ++PNN+KAL     +  + ++ +   +  +  +   P  + +
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 335
           + T  N    Y+ + R+ D Q    K     + ++          +R             
Sbjct: 94  LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS--------SPYRIESPELDCEEGWT 145

Query: 336 QLKF--KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF---EQGLQDYEQALDLL 390
           +LK      +RA    +  L  +P N +       A   ++N+   +  +    QA+ L 
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205

Query: 391 PNDQQILKEIAFVRKQMRHHLNLEK 415
           P++Q +   +A    +MR     E 
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEG 230

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 13/142 (9%), Positives = 36/142 (25%), Gaps = 9/142 (6%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQ-- 311
             E E      L +   V   ++++   Y + +    A    KKA+         + Q  
Sbjct: 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288

Query: 312 SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQV 371
              + +     +     +     +    +    A+           N  +          
Sbjct: 289 CCYRAKVFQVMNLRENGMYGKRKLL---ELIGHAVAHLKKADEANDNLFRVCSILASLHA 345

Query: 372 SMNNFEQGLQDYEQALDLLPND 393
             + +E+    +++        
Sbjct: 346 LADQYEEAEYYFQKEFSKELTP 367

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 14/132 (10%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
            +           +A    ++A+R               +       AL  +  ++ + +
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRL-----------NPDNQYLKVLLALK-LHKMREEGE 227

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
                  L ++ L   P     L    +     +  ++ ++  ++AL+ +PN+  +  +I
Sbjct: 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287

Query: 401 AFVRKQMRHHLN 412
               +     + 
Sbjct: 288 GCCYRAKVFQVM 299

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 12/148 (8%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--- 314
              A           +++ R      + +   ++  +A+  ++K           Q    
Sbjct: 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375

Query: 315 ---KTQQKHFRSYYTAALLNMAAVQLK------FKAYKRAINLCDDILLMEPNNVKALFR 365
                Q    +    A    +  V++        K   +   +    L     + +AL  
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHV 435

Query: 366 RGRAQVSMNNFEQGLQDYEQALDLLPND 393
               Q      +Q  +D E+ L+     
Sbjct: 436 LAFLQELNEKMQQADEDSERGLESGSLI 463

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 22/134 (16%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAV------------RYIKWYNQSQSKTQQKHFRSY---- 324
           N G   +   R   AQ                    Y+      + + ++   + +    
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175

Query: 325 -----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 379
                +      +  +  +    +R      D   +  +  +  F  G+  +S+ + +  
Sbjct: 176 KEQWGWNIVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234

Query: 380 LQDYEQALDLLPND 393
              ++ A+    ++
Sbjct: 235 TALFKLAVANNVHN 248

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 28/119 (23%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 334
             G  Y  L     A+  + +A+  I+      +       TQ  +    + AA      
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALA-IRPDMPEVFNYLGIYLTQAGN----FDAAY----- 97

Query: 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
                +A+   + L       +P    A   RG A       +    D        PND
Sbjct: 98  -----EAFDSVLEL-------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 16/116 (13%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G    KL  + +A   ++   +                       A  ++   Q + +
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQ----------------KEPEREEAWRSLGLTQAENE 65

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 396
               AI   +   +++P ++        +  + +N    L      L   P  +Q+
Sbjct: 66  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 13/74 (17%), Positives = 20/74 (27%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
             +      LK      A    + +   EP   +A    G  Q         +     A 
Sbjct: 19  NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78

Query: 388 DLLPNDQQILKEIA 401
            L P D  +   +A
Sbjct: 79  MLDPKDIAVHAALA 92

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
                  +     + + +  A+      L  +P    A    G+      +     Q +E
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 385 QALDLLPN--DQQILKEIAFVRKQMRHHLNLE 414
             L    +  DQQ++KE+    +++     LE
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
           H    +++ A  +   Y ++ +   +   R     +  ++         +  AI   +  
Sbjct: 273 HIFLGQFEDAAEH---YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329

Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
           L +           +A +  G A  ++   E+ L+  EQ L L
Sbjct: 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 8/105 (7%), Positives = 26/105 (24%), Gaps = 7/105 (6%)

Query: 289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 348
            N                  ++ +  +       S     L             +  +  
Sbjct: 14  ENVSSLGLGSGGGGTNS---HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAF 70

Query: 349 CDDILLMEPNNVK----ALFRRGRAQVSMNNFEQGLQDYEQALDL 389
               +     +++       + G A   + ++ + +Q ++  L L
Sbjct: 71  FQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 42.4 bits (101), Expect = 3e-05
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N GN Y+K     +A   Y+KA+  +                     A  N+     K  
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PRSAEAWYNLGNAYYKQG 49

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
            Y  AI      L ++P + +A +  G A     ++++ ++ Y++AL+L P 
Sbjct: 50  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
           +    +++ A  Y   Y ++    +Q   R+    +  ++       + Y++AI+     
Sbjct: 237 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 406
           L +           +A +  G A  ++ N +Q +   E+ L       +I +E+     +
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREVGDKSGE 346

Query: 407 MRHHLNL 413
           +   LNL
Sbjct: 347 LTARLNL 353

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 13/156 (8%), Positives = 40/156 (25%), Gaps = 35/156 (22%)

Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY----------------------- 305
              +    +  + +G     L RM +A +  +KA                          
Sbjct: 69  NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128

Query: 306 ------IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL------ 353
                 +  Y Q+ +  + +         +   + + ++ + +  A              
Sbjct: 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188

Query: 354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
              P   K    +   Q+   ++    +   ++  +
Sbjct: 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 17/112 (15%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
             G  Y  L     A+   K+A+  ++   +                    +A + L   
Sbjct: 123 QRGLVYALLGERDKAEASLKQALA-LEDTPE----------------IRSALAELYLSMG 165

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
               A+      L   P ++    R   A +     E+  +          +
Sbjct: 166 RLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 17/118 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 334
                  KL  ++ A    K  V          +   S++          Y A       
Sbjct: 44  WLARTQLKLGLVNPALENGKTLVA-RTPRYLGGYMVLSEA----------YVALYRQAED 92

Query: 335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
            +      ++A+++  D   + P       +RG     +   ++     +QAL L   
Sbjct: 93  RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N GN Y+K     +A   Y+KA+  +                     A  N+     K  
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PNNAEAWYNLGNAYYKQG 57

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 392
            Y  AI      L ++PNN +A +  G A     ++++ ++ Y++AL+L PN
Sbjct: 58  DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 293 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 352
           +    +++ A  Y   Y ++    +Q   R+    +  ++       + Y++AI+     
Sbjct: 233 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289

Query: 353 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 389
           L +           +A +  G A  ++ N +Q +   E+ L++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQAL 387
            L      +     + A+   ++ L  EP    +A +  G A   + ++++ L +Y+ A+
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 388 DLLPND 393
           +L P+ 
Sbjct: 63  ELNPDS 68

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 20/147 (13%)

Query: 258 YVEAENDKPLVLNQMEDVIRTI--------KNSGNEYFKLNR---MHDAQRKYKKAVRYI 306
           + +  +    VL + E   R           N+ N      R   +   Q+   +    +
Sbjct: 96  FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE---M 152

Query: 307 KWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR 366
            +      + Q K+++ ++     +   +    +   + +    DIL  +  N  A   R
Sbjct: 153 NYITAI-IEEQPKNYQVWH-----HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206

Query: 367 GRAQVSMNNFEQGLQDYEQALDLLPND 393
                    ++  LQ  +Q L     +
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRN 233

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 386
             LL   +  L+   + +A+N+   +     +       +    +    FE      ++ 
Sbjct: 7   EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELA----QEL 62

Query: 387 LDLLPNDQQ 395
           L  +P + Q
Sbjct: 63  LATIPLEYQ 71

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 384
                  +A   LK     RA+ L ++++  +P+ V   +  G+    ++  +  +  Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 385 QALDLLPN--DQQILKEIAFVRKQM----RHH 410
           Q +++      Q+ L E+   + +      HH
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 54/406 (13%), Positives = 113/406 (27%), Gaps = 120/406 (29%)

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIY--PSLVKA 123
            +  I+  F  +   + NF+          C + ++   K I  K +   I      V  
Sbjct: 17  QYKDILSVF--EDAFVDNFD----------CKDVQDM-PKSILSKEEIDHIIMSKDAVSG 63

Query: 124 MFRMLTF-----TSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT-NNCEIHLQR 177
             R+          MV  F +   L +     L+   +       + T         L  
Sbjct: 64  TLRLFWTLLSKQEEMVQKF-VEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 178 LNVKLRKIEADLSILEAKHYYNQGALEKK--RGITEHKKKLETGRGKEI-SRKQYRDLVK 234
            N    K   ++S L+      Q  LE +  + +         G GK   +         
Sbjct: 122 DNQVFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKV 176

Query: 235 KKKKKNGIF----GCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLN 290
           + K    IF                       N    VL  ++ +           ++++
Sbjct: 177 QCKMDFKIFWLNLKNC----------------NSPETVLEMLQKL----------LYQID 210

Query: 291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD 350
               ++  +   ++          + + +                 LK K Y+  + +  
Sbjct: 211 PNWTSRSDHSSNIKL----RIHSIQAELRRL---------------LKSKPYENCLLVLL 251

Query: 351 D---------------ILLM--EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL--- 390
           +               ILL          L       +S+++    L   ++   LL   
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKY 310

Query: 391 ----PND--QQILK----EIAFVRKQMRH---------HLNLEKMT 417
               P D  +++L      ++ + + +R          H+N +K+T
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 12/145 (8%)

Query: 255 EVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNR--MHDAQRKYKKAVRYIKWYNQS 312
           E   +E +     +L +++     +      YF   R      QR+Y  A   IK++ ++
Sbjct: 73  EKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSA---IKFFKKA 129

Query: 313 QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFR 365
           +SK      R         M+      K    +++       +  +        ++    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 366 RGRAQVSMNNFEQGLQDYEQALDLL 390
                + +  +E  +  +++A  + 
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMA 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	99.97
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.86
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.77
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.76
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.67
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.54
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.51
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.5
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.48
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.46
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.45
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.44
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.44
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.43
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.42
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.42
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.41
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.4
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.4
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.39
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.38
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.38
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.37
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.35
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.34
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.33
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.33
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.31
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.3
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.27
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.27
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.27
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.27
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.26
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.26
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.25
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.25
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.23
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.23
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.17
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.15
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.15
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.14
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.1
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.1
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.06
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.05
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.04
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.03
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.03
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.02
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.96
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.94
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.93
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.93
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.92
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.91
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.9
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.89
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.85
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.82
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.79
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.78
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.76
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.76
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.74
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.71
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.69
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.62
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.56
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.54
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.52
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.5
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.5
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.43
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.42
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.3
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.22
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.14
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.07
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.02
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.99
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.87
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.81
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.43
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.38
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.24
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.14
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.11
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.89
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.6
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.5
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.33
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.28
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.81
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.68
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.08
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.75
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.48
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.26
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.26
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.11
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.02
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.65
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.35
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.3
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.66
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.16
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.09
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.18
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.16
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	84.24
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	83.57
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	81.48

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=2.4e-62  Score=492.69  Aligned_cols=314  Identities=42%  Similarity=0.704  Sum_probs=280.5

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCC-CccccccCCcccccccccEEeeCccccCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~-~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      +|+|||||+|++++.|+|+||||++.||+||+||++||++++|.|.. ++..||+|+.||||||+|||||||++.++|+|
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            89999999999999999999999999999999999999998887643 55668999999999999999999999899999


Q ss_pred             CccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          89 GESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      |+|+||.+|+||++.++|+.     ||+              ||||+.   |       |+  ++|||||||++      
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~-----~g~--------------l~ma~~---~-------~~--~~~sqffi~~~------  137 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDK-----EGL--------------LSMANA---G-------SN--TNGSQFFITTV------  137 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS------
T ss_pred             CCCCCCCCcCCCcCCcCCCC-----CeE--------------EEEeeC---C-------CC--CCCceEEEeCC------
Confidence            99999999999999999998     999              999999   8       99  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       ++| |||+                                                             .|++||+|++
T Consensus       138 -~~~-~ld~-------------------------------------------------------------~~~vfG~v~~  154 (370)
T 1ihg_A          138 -PTP-HLDG-------------------------------------------------------------KHVVFGQVIK  154 (370)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -CCc-ccCC-------------------------------------------------------------CceEEEEEec
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchhhCCcccc-----------------------------------------cchhhhHHHHHHhccchhh
Q psy6102         249 GFGVAREVSYVEAENDKPLV-----------------------------------------LNQMEDVIRTIKNSGNEYF  287 (426)
Q Consensus       249 Gldvl~~I~~l~~~~~~P~~-----------------------------------------~i~ilk~a~~~~~~G~~~f  287 (426)
                      |++++++|+...+..++|..                                         .......+..++.+|+.++
T Consensus       155 g~~v~~~i~~~~~~~~~P~~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~  234 (370)
T 1ihg_A          155 GMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFF  234 (370)
T ss_dssp             CHHHHHHHHTSCEETTEESSCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGSSSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCCCCccceeEEEEEEEEeccCccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999987764343332                                         1112335677999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  367 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg  367 (426)
                      +.|+|++|+..|++|+++++........+....++|.+..+|.++|.|++++++|++|+.+|++||+++|+++++|+++|
T Consensus       235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  314 (370)
T 1ihg_A          235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRA  314 (370)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            99999999999999999766543222234444568899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      .+|..+|++++|+.+|++|++++|++..++..++.++..+++.+++++..+++||+
T Consensus       315 ~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          315 QGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999985

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=2e-45  Score=329.39  Aligned_cols=166  Identities=51%  Similarity=0.802  Sum_probs=156.1

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      .+|+|||||+|++++.|+|+||||++.||+||+||++||++++|.|..+|..||+|+.||||+|+|||||||++.++|+|
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   81 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCC
Confidence            58999999999999999999999999999999999999999877776778889999999999999999999998889999


Q ss_pred             CccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          89 GESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      |.|+||++|+||++.++|++     ||+              ||||+.   |       |+  +++||||||+.      
T Consensus        82 g~siyg~~f~dE~~~l~h~~-----~G~--------------lsmAn~---g-------p~--tngSQFfIt~~------  124 (173)
T 2igv_A           82 GESIYGEKFPDENFKEKHTG-----PGV--------------LSMANA---G-------PN--TNGSQFFLCTV------  124 (173)
T ss_dssp             CCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBSSCEEEESS------
T ss_pred             CCccCCCcccCcccccCCCC-----CeE--------------EEEeeC---C-------CC--CcceEEEEEcC------
Confidence            99999999999999999998     899              999999   8       99  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       ++| |||+                                                             +|++||+|++
T Consensus       125 -~~~-~LDg-------------------------------------------------------------~~~vFG~Vv~  141 (173)
T 2igv_A          125 -KTE-WLDG-------------------------------------------------------------KHVVFGRVVE  141 (173)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -Ccc-ccCC-------------------------------------------------------------CeeEEEEEec
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchhhCCcccccchhhh
Q psy6102         249 GFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       249 Gldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      |++++++|+.+.+.+++|..++.|.+
T Consensus       142 G~dvv~~I~~~~t~~~~P~~~v~I~~  167 (173)
T 2igv_A          142 GLDVVKAVESNGSQSGKPVKDCMIAD  167 (173)
T ss_dssp             CHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             CHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence            99999999999888888888776643

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.9e-45  Score=330.69  Aligned_cols=169  Identities=43%  Similarity=0.729  Sum_probs=155.6

Q ss_pred             ccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCC-CccccccCCcccccccccEEeeCccccC
Q psy6102           6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRIIPQFMIQGGDITNF   84 (426)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~-~k~~~y~~~~f~rv~~~~~iq~G~~~~~   84 (426)
                      ++..|++|||||+|++++.|+|+||||++.||+||+||++||++++|.|.. +|..||+|+.||||+|+|||||||++.+
T Consensus         2 ~~~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~   81 (177)
T 1a58_A            2 SKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKG   81 (177)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSS
T ss_pred             CCCCCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCC
Confidence            455799999999999999999999999999999999999999998876643 4566999999999999999999999888


Q ss_pred             CCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102          85 NGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL  164 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~  164 (426)
                      +|+||+|+||..|+||++.++|++     ||+              |||||.   |       |+  +++||||||+.  
T Consensus        82 ~g~gg~si~g~~f~dE~~~~~h~~-----~G~--------------lsmAn~---g-------p~--tngSQFfIt~~--  128 (177)
T 1a58_A           82 DGTGGESIYGGMFDDEEFVMKHDE-----PFV--------------VSMANK---G-------PN--TNGSQFFITTT--  128 (177)
T ss_dssp             SSSCCCCTTSSCBCCCCCCSCCCS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS--
T ss_pred             CCCCCCcccCCcccCcccCcccCC-----CeE--------------EEEeeC---C-------CC--CceeEEEEECC--
Confidence            999999999999999999999998     999              999999   8       99  99999999999  


Q ss_pred             ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102         165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG  244 (426)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG  244 (426)
                           ++| |||+                                                             +|++||
T Consensus       129 -----~~~-~LDg-------------------------------------------------------------~~~VFG  141 (177)
T 1a58_A          129 -----PAP-HLNN-------------------------------------------------------------IHVVFG  141 (177)
T ss_dssp             -----CCG-GGTT-------------------------------------------------------------TSCEEE
T ss_pred             -----CCC-ccCC-------------------------------------------------------------CEEEEE
Confidence                 999 9999                                                             999999


Q ss_pred             hhhccccHHHHHhhchhh-CCcccccchhhh
Q psy6102         245 CVRQGFGVAREVSYVEAE-NDKPLVLNQMED  274 (426)
Q Consensus       245 ~VieGldvl~~I~~l~~~-~~~P~~~i~ilk  274 (426)
                      +|++|++++++|+.+++. .++|...+.|.+
T Consensus       142 ~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~  172 (177)
T 1a58_A          142 KVVSGQEVVTKIEYLKTNSKNRPLADVVILN  172 (177)
T ss_dssp             EEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             EEEcCHHHHHHHHhCCCCCCCcCCCCeEEEE
Confidence            999999999999999984 578887776643

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=3.8e-45  Score=329.18  Aligned_cols=168  Identities=41%  Similarity=0.665  Sum_probs=154.9

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCC-CCccccccCCcccccccccEEeeCccccCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~-~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      +..+|+||||++|++|+.|+|+||||++.||+||+||++||+|++|.|. .+|.+||+|+.||||||+|||||||++.++
T Consensus         6 ~~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~   85 (179)
T 2wfi_A            6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGN   85 (179)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCC
Confidence            4468999999999999999999999999999999999999999887663 357899999999999999999999998889


Q ss_pred             CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      |+||+|+||..|+||++.++|++     ||+              |||||.   |       |+  +++||||||+.   
T Consensus        86 g~gg~si~g~~f~dE~~~~~h~~-----~G~--------------lsMAn~---g-------p~--tngSQFfIt~~---  131 (179)
T 2wfi_A           86 GRGGESIYGGFFEDESFAVKHNK-----EFL--------------LSMANR---G-------KD--TNGSQFFITTK---  131 (179)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS---
T ss_pred             CCCCCcccCCcccccccCcCcCC-----CeE--------------EEEEeC---C-------CC--CcceEEEEEcC---
Confidence            99999999999999999999998     999              999999   8       99  99999999999   


Q ss_pred             cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102         166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC  245 (426)
Q Consensus       166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~  245 (426)
                          ++| |||+                                                             +|++||+
T Consensus       132 ----~~~-~LDg-------------------------------------------------------------~~tVFG~  145 (179)
T 2wfi_A          132 ----PTP-HLDG-------------------------------------------------------------HHVVFGQ  145 (179)
T ss_dssp             ----CCG-GGTT-------------------------------------------------------------TSCEEEE
T ss_pred             ----CCc-ccCC-------------------------------------------------------------CeeEEEE
Confidence                999 9999                                                             9999999


Q ss_pred             hhccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         246 VRQGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       246 VieGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      |++|++++++|+.+++ ..++|...+.|.+
T Consensus       146 Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  175 (179)
T 2wfi_A          146 VISGQEVVREIENQKTDAASKPFAEVRILS  175 (179)
T ss_dssp             EEECHHHHHHHHTCCBCTTSCBSSCEEEEE
T ss_pred             EeCCHHHHHHHHcCCCCCCCCCCCCeEEEe
Confidence            9999999999999998 4578888776643

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=6.6e-45  Score=328.77  Aligned_cols=170  Identities=48%  Similarity=0.754  Sum_probs=155.9

Q ss_pred             cccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccC
Q psy6102           5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF   84 (426)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~   84 (426)
                      .+...+++|||||+|++++.|+|+||||++.||+||+||++||+|++|.|..+|..+|+|+.||||||+|||||||++.+
T Consensus        14 ~~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~   93 (186)
T 2poy_A           14 LYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG   93 (186)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS
T ss_pred             cccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCC
Confidence            45678999999999999999999999999999999999999999988777777888899999999999999999999888


Q ss_pred             CCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102          85 NGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL  164 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~  164 (426)
                      +|+||.|+||+.|+||++.++|.+     ||+              ||||+.   |       |+  +++||||||+.  
T Consensus        94 ~G~gg~si~g~~f~dE~~~l~h~~-----~G~--------------lsMAn~---g-------pn--tngSQFFIt~~--  140 (186)
T 2poy_A           94 DGTGGESIYGSKFRDENFVYTHDA-----PFL--------------LSMANA---G-------PN--TNGSQFFITTV--  140 (186)
T ss_dssp             SSSCCCCTTC-CBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS--
T ss_pred             CCCCCCccCCCcccCcccccccCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEECC--
Confidence            999999999999999999999998     899              999999   8       99  99999999999  


Q ss_pred             ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102         165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG  244 (426)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG  244 (426)
                           +++ |||+                                                             +|++||
T Consensus       141 -----~~~-~LDg-------------------------------------------------------------~~tVFG  153 (186)
T 2poy_A          141 -----PCP-WLDG-------------------------------------------------------------KHVVFG  153 (186)
T ss_dssp             -----CCG-GGTT-------------------------------------------------------------TSCEEE
T ss_pred             -----CCc-ccCC-------------------------------------------------------------CeeEEE
Confidence                 999 9999                                                             999999


Q ss_pred             hhhccccHHHHHhhchhhCCcccccchhhh
Q psy6102         245 CVRQGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       245 ~VieGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      +|++|++++++|+.+.+.+++|..++.|.+
T Consensus       154 ~Vv~Gmdvv~~I~~~~t~~~~P~~~v~I~~  183 (186)
T 2poy_A          154 KVLEGMEVVKSIEKCGSQNGKPTKSVCITA  183 (186)
T ss_dssp             EEEECHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             EEecCHHHHHHHHhCCCCCCCCCCCEEEEe
Confidence            999999999999999988888888776643

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.8e-45  Score=330.28  Aligned_cols=170  Identities=41%  Similarity=0.674  Sum_probs=154.4

Q ss_pred             cccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCC-CCccccccCCcccccccccEEeeCcccc
Q psy6102           5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSHFHRIIPQFMIQGGDITN   83 (426)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~-~~k~~~y~~~~f~rv~~~~~iq~G~~~~   83 (426)
                      .+...+|+||||++|++|+.|+|+||||++.||+||+||++||+|++|.|. .+|.+||+|+.||||||+|||||||++.
T Consensus        14 ~~~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~   93 (192)
T 2he9_A           14 LVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE   93 (192)
T ss_dssp             -----CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTT
T ss_pred             ccccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccC
Confidence            456789999999999999999999999999999999999999999887663 3578999999999999999999999988


Q ss_pred             CCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeec
Q psy6102          84 FNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSF  163 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~  163 (426)
                      ++|+||+|+||+.|+||++.++|++     ||+              |||||.   |       |+  +++||||||+. 
T Consensus        94 ~~G~gg~siyg~~f~dE~~~l~h~~-----~G~--------------lsMAn~---g-------p~--tngSQFFIt~~-  141 (192)
T 2he9_A           94 GNGKGGESIYGGYFKDENFILKHDR-----AFL--------------LSMANR---G-------KH--TNGSQFFITTK-  141 (192)
T ss_dssp             SSSSCCCCTTSSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS-
T ss_pred             CCCCCCCcccCCcccCccccCCCCC-----CeE--------------EEEEeC---C-------CC--CcceEEEEEcC-
Confidence            8999999999999999999999998     999              999999   8       99  99999999999 


Q ss_pred             cccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhccccccee
Q psy6102         164 LNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIF  243 (426)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vF  243 (426)
                            ++| |||+                                                             +|++|
T Consensus       142 ------~~~-~LDg-------------------------------------------------------------~~tVF  153 (192)
T 2he9_A          142 ------PAP-HLDG-------------------------------------------------------------VHVVF  153 (192)
T ss_dssp             ------CCG-GGTT-------------------------------------------------------------TSCEE
T ss_pred             ------CCc-ccCC-------------------------------------------------------------CccEE
Confidence                  999 9999                                                             99999


Q ss_pred             chhhccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         244 GCVRQGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       244 G~VieGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      |+|++|++++++|+.+++ ..++|...+.|.+
T Consensus       154 G~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  185 (192)
T 2he9_A          154 GLVISGFEVIEQIENLKTDAASRPYADVRVID  185 (192)
T ss_dssp             EEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             EEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEE
Confidence            999999999999999988 4578888776643

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=1.6e-44  Score=322.74  Aligned_cols=165  Identities=49%  Similarity=0.767  Sum_probs=153.3

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      .+++|||||+|++++.|+|+||||++.||+||+||++||+++ |.|..++..+|+|+.||||+|+|||||||++.++|+|
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            589999999999999999999999999999999999999875 4445567778999999999999999999998889999


Q ss_pred             CccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          89 GESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      |.|+||+.|+||++.++|++     ||+              ||||+.   |       |+  +++||||||+.      
T Consensus        81 g~si~g~~f~dE~~~l~h~~-----~G~--------------lsmAn~---g-------p~--tngSQFfIt~~------  123 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQ-----PGL--------------LSMANA---G-------PN--TNSSQFFITLV------  123 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS------
T ss_pred             CccccCCcccccccccccCC-----CCE--------------EEEeec---C-------CC--CcccEEEEECC------
Confidence            99999999999999999998     899              999999   8       99  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       +++ |||+                                                             +|++||+|++
T Consensus       124 -~~~-~Ldg-------------------------------------------------------------~~~vFG~Vv~  140 (170)
T 1qng_A          124 -PCP-WLDG-------------------------------------------------------------KHVVFGKVIE  140 (170)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -CCc-ccCC-------------------------------------------------------------CeeEEEEEEC
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchhhCCcccccchhhh
Q psy6102         249 GFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       249 Gldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      ||+++++|+.+.+.+++|..++.|.+
T Consensus       141 G~dvv~~I~~~~t~~~~P~~~v~I~~  166 (170)
T 1qng_A          141 GMNVVREMEKEGAKSGYVKRSVVITD  166 (170)
T ss_dssp             CHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             CHHHHHHHHhCCCCCCCCCCCeEEEe
Confidence            99999999999998888888776643

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=3.3e-44  Score=320.77  Aligned_cols=166  Identities=42%  Similarity=0.649  Sum_probs=148.9

Q ss_pred             CCcccccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeC
Q psy6102           1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGG   79 (426)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G   79 (426)
                      |........+|+||||+++++|+.|+|+||||++.||+||+||++||++++        +| |+|+.||||+|+||||||
T Consensus         1 ~~~~~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~--------g~~Y~g~~FhRvi~~f~iQgG   72 (172)
T 2cmt_A            1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER--------GFGYHNCCFHRVIPQFMCQGG   72 (172)
T ss_dssp             --------CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCSSTTCBEEEEETTTEEEEC
T ss_pred             CCccCCCCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCC--------CceECCCEEEEEECCCEEEcC
Confidence            445556778999999999999999999999999999999999999998743        56 999999999999999999


Q ss_pred             ccccCCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEE
Q psy6102          80 DITNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSC  159 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i  159 (426)
                      |++.++|+||.|+||..|+||++.++|++     ||+              ||||+.   |       |+  +++|||||
T Consensus        73 d~~~~~G~gg~si~g~~f~dE~~~l~h~~-----~G~--------------lsmA~~---g-------p~--t~gSQFfI  121 (172)
T 2cmt_A           73 DFVKGDGTGGKSIYGRKFDDENFQLRHEG-----FGV--------------LSMANS---G-------PN--TNGSQFFI  121 (172)
T ss_dssp             CTTTSSSSCCCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEE
T ss_pred             CccCCCCCCCCccCCCcccccccCcccCC-----ceE--------------EEEeeC---C-------CC--CcccEEEE
Confidence            99888999999999999999999999998     899              999999   8       99  99999999


Q ss_pred             EeeccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccc
Q psy6102         160 TVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKK  239 (426)
Q Consensus       160 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  239 (426)
                      |+.       +++ |||+                                                             +
T Consensus       122 t~~-------~~~-~LDg-------------------------------------------------------------~  132 (172)
T 2cmt_A          122 CTT-------KCD-WLDG-------------------------------------------------------------K  132 (172)
T ss_dssp             ESS-------CCG-GGTT-------------------------------------------------------------T
T ss_pred             ECC-------CCC-ccCC-------------------------------------------------------------C
Confidence            999       999 9999                                                             9


Q ss_pred             cceechhhccccHHHHHhhchhhCCcccccchhhh
Q psy6102         240 NGIFGCVRQGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       240 ~~vFG~VieGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      |++||+|++|++++++|+.+.+.+++|..++.|.+
T Consensus       133 ~tvFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  167 (172)
T 2cmt_A          133 HVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISR  167 (172)
T ss_dssp             SCEEEEEEECHHHHHHGGGGCCTTCCCSSCEEEEE
T ss_pred             eeEEEEEEcCHHHHHHHHhCCCCCCCCCCCEEEEE
Confidence            99999999999999999999888888888776643

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=3e-44  Score=322.71  Aligned_cols=170  Identities=47%  Similarity=0.741  Sum_probs=155.2

Q ss_pred             cccccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccc
Q psy6102           3 KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDIT   82 (426)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~   82 (426)
                      -....+.+++|||||++++|+.|+|+||||++.||+||+||++||++++|.  .+|..+|+|+.||||+|+|||||||++
T Consensus         3 ~~~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~   80 (177)
T 1mzw_A            3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFV   80 (177)
T ss_dssp             --CCCCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTT
T ss_pred             ccccCCCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcc
Confidence            344567799999999999999999999999999999999999999987754  246678999999999999999999998


Q ss_pred             cCCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEee
Q psy6102          83 NFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVS  162 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~  162 (426)
                      .++|+||+|+||+.|+||++.++|++     ||+              ||||+.   |       |+  +++||||||+.
T Consensus        81 ~~~G~gg~si~g~~f~dE~~~l~h~~-----~G~--------------lsmAn~---g-------p~--tngSQFfIt~~  129 (177)
T 1mzw_A           81 NGDGTGVASIYRGPFADENFKLRHSA-----PGL--------------LSMANS---G-------PS--TNGCQFFITCS  129 (177)
T ss_dssp             TSSSCCCCCTTSSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS
T ss_pred             cCCCCCCCccCCCcccCcccccccCC-----CCE--------------EEEccC---C-------CC--CcceEEEEECC
Confidence            88999999999999999999999998     899              999999   8       99  99999999999


Q ss_pred             ccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccce
Q psy6102         163 FLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGI  242 (426)
Q Consensus       163 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v  242 (426)
                             +++ |||+                                                             +|++
T Consensus       130 -------~~~-~LDg-------------------------------------------------------------~~~V  140 (177)
T 1mzw_A          130 -------KCD-WLDG-------------------------------------------------------------KHVV  140 (177)
T ss_dssp             -------CCG-GGTT-------------------------------------------------------------TSCE
T ss_pred             -------CCC-ccCC-------------------------------------------------------------CeeE
Confidence                   999 9999                                                             9999


Q ss_pred             echhhccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         243 FGCVRQGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       243 FG~VieGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ||+|++|++++++|+.+++ .+++|..++.|.+
T Consensus       141 FG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  173 (177)
T 1mzw_A          141 FGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQ  173 (177)
T ss_dssp             EEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             EEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEe
Confidence            9999999999999999998 6788888776643

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=9.1e-44  Score=316.29  Aligned_cols=158  Identities=45%  Similarity=0.739  Sum_probs=148.1

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeCccccCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      .+|+||||++|++|+.|+|+||||++.||+||+||++||+|+.        +| |+|+.||||+|+|||||||++.++|+
T Consensus         2 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~   73 (165)
T 2z6w_A            2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHRVIPSFMCQAGDFTNHNGT   73 (165)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCCSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCC--------CccCcCCEEEEEECCCEEEeCCccCCCCC
Confidence            4899999999999999999999999999999999999998754        67 99999999999999999999888999


Q ss_pred             CCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102          88 GGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF  167 (426)
Q Consensus        88 ~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~  167 (426)
                      ||.|+||+.|+||++.++|.+     ||+              ||||+.   |       |+  +++||||||+.     
T Consensus        74 gg~si~g~~f~dE~~~l~h~~-----~G~--------------lsmA~~---g-------p~--s~~SQFfI~~~-----  117 (165)
T 2z6w_A           74 GGKSIYGSRFPDENFTLKHVG-----PGV--------------LSMANA---G-------PN--TNGSQFFICTI-----  117 (165)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS-----
T ss_pred             CCCcccCCcccCcccccccCC-----CCE--------------EEEeeC---C-------CC--CcccEEEEEcC-----
Confidence            999999999999999999998     899              999999   8       99  99999999999     


Q ss_pred             cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102         168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR  247 (426)
Q Consensus       168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi  247 (426)
                        +++ |||+                                                             +|++||+|+
T Consensus       118 --~~~-~Ldg-------------------------------------------------------------~~~vFG~Vv  133 (165)
T 2z6w_A          118 --KTD-WLDG-------------------------------------------------------------KHVVFGHVI  133 (165)
T ss_dssp             --CCG-GGTT-------------------------------------------------------------TSCEEEEEE
T ss_pred             --CCc-ccCC-------------------------------------------------------------CeeEEEEEE
Confidence              999 9999                                                             999999999


Q ss_pred             ccccHHHHHhhchhhCCcccccchhhh
Q psy6102         248 QGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       248 eGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      +|++++++|+.+.+.+++|..++.|.+
T Consensus       134 ~G~dvv~~I~~~~~~~~~P~~~v~I~~  160 (165)
T 2z6w_A          134 EGMDVVKKIESFGSKSGRTSKKIVITD  160 (165)
T ss_dssp             ECHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             cCHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence            999999999999887788887776643

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=2.3e-43  Score=315.87  Aligned_cols=160  Identities=46%  Similarity=0.719  Sum_probs=148.6

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeCccccCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ...+++||||+++++|+.|+|+||||++.||+||+||++||+|+.        +| |+|+.||||+|+|||||||++.++
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (173)
T 2r99_A            8 ARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK--------GFGFKGSSFHRIIPQFMCQGGDFTNHN   79 (173)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             ccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccC--------CceecCCEEEEeeCCCEEEeCCcCCCC
Confidence            456899999999999999999999999999999999999998744        55 999999999999999999998889


Q ss_pred             CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      |+||.|+||..|+||++.++|++     ||+              ||||+.   |       |+  +++||||||+.   
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~~-----~G~--------------lsmA~~---g-------p~--t~gSQFfIt~~---  125 (173)
T 2r99_A           80 GTGGKSIYGKKFDDENFILKHTG-----PGL--------------LSMANS---G-------PN--TNGSQFFLTCD---  125 (173)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS---
T ss_pred             CCCCCccCCCcccCcccCcccCC-----CcE--------------EEEccC---C-------CC--CcccEEEEECC---
Confidence            99999999999999999999998     899              999999   8       99  99999999999   


Q ss_pred             cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102         166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC  245 (426)
Q Consensus       166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~  245 (426)
                          +++ |||+                                                             +|++||+
T Consensus       126 ----~~~-~LDg-------------------------------------------------------------~~tVFG~  139 (173)
T 2r99_A          126 ----KTD-WLDG-------------------------------------------------------------KHVVFGE  139 (173)
T ss_dssp             ----CCG-GGTT-------------------------------------------------------------TSCEEEE
T ss_pred             ----CCC-ccCC-------------------------------------------------------------CeeEEEE
Confidence                999 9999                                                             9999999


Q ss_pred             hhccccHHHHHhhchhhCCcccccchhhh
Q psy6102         246 VRQGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       246 VieGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      |++||+++++|+.+.+.+++|...+.|.+
T Consensus       140 Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~  168 (173)
T 2r99_A          140 VTEGLDVLRQIEAQGSKDGKPKQKVIIAD  168 (173)
T ss_dssp             EEECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             EEcCHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence            99999999999999888788888776643

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=4.7e-43  Score=324.99  Aligned_cols=167  Identities=39%  Similarity=0.691  Sum_probs=154.5

Q ss_pred             ccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCC
Q psy6102           6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ..+.+++|||||+|++++.|+|+||||++.||+||+||++||+++++.+  ++..||+|+.||||||+|||||||++.++
T Consensus        55 ~~~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~--g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~  132 (229)
T 1z81_A           55 TNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHN  132 (229)
T ss_dssp             SSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSS
T ss_pred             cCCCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc--CCCceECCCEEEEEeCCCEEEcCCCcCCC
Confidence            3557899999999999999999999999999999999999999887654  46679999999999999999999998889


Q ss_pred             CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      |+||+|+||+.|+||++.++|++     ||+              |||||.   |       |+  +++||||||+.   
T Consensus       133 G~Gg~siyg~~f~dE~~~l~h~~-----~G~--------------LsMAn~---g-------pn--tngSQFFIt~~---  178 (229)
T 1z81_A          133 GSGSLSIYGEKFDDENFDIKHDK-----EGL--------------LSMANS---G-------PN--TNGCQFFITTK---  178 (229)
T ss_dssp             SCCCCBTTBSCCCCCCCCSCCCS-----TTE--------------EEECCS---S-------SS--CCCSCEEEESS---
T ss_pred             CCCCCccCCCcccccccccccCC-----CcE--------------EEeccC---C-------CC--CcccEEEEECC---
Confidence            99999999999999999999998     899              999999   8       99  99999999999   


Q ss_pred             cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102         166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC  245 (426)
Q Consensus       166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~  245 (426)
                          +++ |||+                                                             +|++||+
T Consensus       179 ----~~~-~LDg-------------------------------------------------------------~~tVFG~  192 (229)
T 1z81_A          179 ----KCE-WLDG-------------------------------------------------------------KNVVFGR  192 (229)
T ss_dssp             ----CCG-GGBT-------------------------------------------------------------TBCEEEE
T ss_pred             ----CCc-ccCC-------------------------------------------------------------CeeEEEE
Confidence                999 9999                                                             9999999


Q ss_pred             hh--ccccHHHHHhhchhhC--Ccccccchhhh
Q psy6102         246 VR--QGFGVAREVSYVEAEN--DKPLVLNQMED  274 (426)
Q Consensus       246 Vi--eGldvl~~I~~l~~~~--~~P~~~i~ilk  274 (426)
                      |+  +|++++++|+.+.+..  ++|..++.|.+
T Consensus       193 Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~  225 (229)
T 1z81_A          193 IIDNDSLLLLKKIENVSVTPYIYKPKIPINVVE  225 (229)
T ss_dssp             ECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEE
T ss_pred             EEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEe
Confidence            99  9999999999999954  78888776644

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=6.2e-43  Score=311.01  Aligned_cols=158  Identities=42%  Similarity=0.677  Sum_probs=148.6

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeCccccCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      .||+||||++|++|+.|+|+||||++.||+||+||++||+|+.        +| |+|+.||||+|+|||||||++.++|+
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~--------g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~   72 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQH--------GFGYKDSIFHRVIPQFMLQGGDFTRHNGT   72 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCSSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccC--------CCcccCCEEEEEECCCeEEeCCCCCCCCC
Confidence            3799999999999999999999999999999999999999754        56 99999999999999999998778999


Q ss_pred             CCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102          88 GGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF  167 (426)
Q Consensus        88 ~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~  167 (426)
                      |+.|+||.+|++|++.++|++     ||+              ||||+.   |       |+  +++||||||+.     
T Consensus        73 gg~si~g~~~~dE~~~l~h~~-----~G~--------------lsma~~---g-------~~--t~~SQFfIt~~-----  116 (164)
T 3pmp_A           73 GGKSIYGEKFADENFQVKHTK-----PGL--------------LSMANA---G-------AN--TNGSQFFITTV-----  116 (164)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECBS---S-------TT--CBCSCEEEESS-----
T ss_pred             CCcccCCccccccccccCcCC-----CcE--------------EEEeeC---C-------CC--CcccEEEEECC-----
Confidence            999999999999999999998     999              999999   8       99  99999999999     


Q ss_pred             cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102         168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR  247 (426)
Q Consensus       168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi  247 (426)
                        +++ |||+                                                             +|++||+|+
T Consensus       117 --~~~-~Ld~-------------------------------------------------------------~~~vFG~Vv  132 (164)
T 3pmp_A          117 --PTS-WLDG-------------------------------------------------------------KHVVFGEVI  132 (164)
T ss_dssp             --CCG-GGTT-------------------------------------------------------------TSCEEEEEE
T ss_pred             --CCh-hhCC-------------------------------------------------------------CccEEEEEe
Confidence              999 9999                                                             999999999


Q ss_pred             ccccHHHHHhhchhhCCcccccchhhh
Q psy6102         248 QGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       248 eGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      +|++++++|+.+.+.+++|..++.|.+
T Consensus       133 ~G~~vv~~I~~~~~~~~~P~~~v~I~~  159 (164)
T 3pmp_A          133 EGLDIVRKVEGKGSASGKTNATIKITD  159 (164)
T ss_dssp             ECHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             CCHHHHHHHHhCCCCCCCcccCEEEEe
Confidence            999999999999988888887776644

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=7e-43  Score=311.69  Aligned_cols=160  Identities=41%  Similarity=0.646  Sum_probs=146.8

Q ss_pred             ccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeCccccC
Q psy6102           6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGGDITNF   84 (426)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G~~~~~   84 (426)
                      ..+.+++||||++|++|+.|+|+||||++.||+||+||++||+|+.        +| |+|+.||||+|+|||||||+..+
T Consensus         7 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~FhRvi~~f~iQgGd~~~~   78 (172)
T 2haq_A            7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH--------GFGYKDSIFHRVIQNFMIQGGDFTNF   78 (172)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCCSTTCBCCEEETTTEEEECCTTTS
T ss_pred             CCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCC--------CcccCCCEEEEEECCCEEecCCccCC
Confidence            3567899999999999999999999999999999999999998744        56 99999999999999999998778


Q ss_pred             CCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102          85 NGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL  164 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~  164 (426)
                      +|+||+|+||++|+||++.++|.      ||+              ||||+.   |       |+  +++||||||+.  
T Consensus        79 ~g~gg~si~g~~f~dE~~~l~h~------~G~--------------lsmAn~---g-------p~--tngSQFfIt~~--  124 (172)
T 2haq_A           79 DGTGGKSIYGEKFADENLNVKHF------VGA--------------LSMANA---G-------PN--TNGSQFFITTA--  124 (172)
T ss_dssp             SSSCCCCSSSSCBCCCCCCSCCC------TTE--------------EEECCS---S-------TT--CBCSCEEEESS--
T ss_pred             CCCCCccccCCcccCcCCCcccC------ceE--------------EEEccC---C-------CC--CcccEEEEECC--
Confidence            99999999999999998888877      599              999999   8       99  99999999999  


Q ss_pred             ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102         165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG  244 (426)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG  244 (426)
                           +++ +||+                                                             +|++||
T Consensus       125 -----~~~-~LDg-------------------------------------------------------------~~~vFG  137 (172)
T 2haq_A          125 -----PTP-WLDG-------------------------------------------------------------RHVVFG  137 (172)
T ss_dssp             -----CCG-GGTT-------------------------------------------------------------TSCEEE
T ss_pred             -----CCC-ccCC-------------------------------------------------------------CEeEEE
Confidence                 999 9999                                                             999999


Q ss_pred             hhhccccHHHHHhhchhh-CCcccccchhhh
Q psy6102         245 CVRQGFGVAREVSYVEAE-NDKPLVLNQMED  274 (426)
Q Consensus       245 ~VieGldvl~~I~~l~~~-~~~P~~~i~ilk  274 (426)
                      +|++|++++++|+.+++. .++|..++.|.+
T Consensus       138 ~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  168 (172)
T 2haq_A          138 KVLDGMDVVLRIEKTKTNSHDRPVKPVKIVA  168 (172)
T ss_dssp             EEEECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             EEeCCHHHHHHHHhCCcCCCCcCCCCeEEEE
Confidence            999999999999999984 458887766543

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=2.8e-42  Score=311.59  Aligned_cols=161  Identities=47%  Similarity=0.720  Sum_probs=149.1

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      ...+|+|||||+|++++.|+|+||||++.||+||+||++||++++|.+       |+|+.||||+|+|||||||++.++|
T Consensus        19 ~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~g   91 (184)
T 3rdd_A           19 GMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNG   91 (184)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCS-------STTCBCCEEETTTEEEECCTTTSSS
T ss_pred             cCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcc-------cCCCEEEEccCCcEEEeCCCCCCCC
Confidence            567899999999999999999999999999999999999999865333       9999999999999999999888899


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      +|+.+++|..|++|++.++|++     ||+              ||||+.   |       |+  +++||||||++    
T Consensus        92 ~gg~si~g~~~~de~~~l~h~~-----~G~--------------lsmA~~---g-------p~--s~gSQFfIt~~----  136 (184)
T 3rdd_A           92 TGGKSIYGEKFEDENFILKHTG-----PGI--------------LSMANA---G-------PN--TNGSQFFICTA----  136 (184)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBSSCEEEESS----
T ss_pred             CCCcccCCCcccCcccccccCC-----CcE--------------EEEEeC---C-------CC--CcccEEEEEeC----
Confidence            9999999999999999999998     899              999999   8       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +++ +||+                                                             +|++||+|
T Consensus       137 ---~~~-~LDg-------------------------------------------------------------~~tVFG~V  151 (184)
T 3rdd_A          137 ---KTE-WLDG-------------------------------------------------------------KHVVFGKV  151 (184)
T ss_dssp             ---CCG-GGTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---Cch-hhCC-------------------------------------------------------------CceEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhhCCcccccchhhh
Q psy6102         247 RQGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      ++|++++++|+.+.+.+++|...+.|.+
T Consensus       152 v~G~dvv~~I~~~~~~~g~P~~~v~I~~  179 (184)
T 3rdd_A          152 KEGMNIVEAMERFGSRNGKTSKKITIAD  179 (184)
T ss_dssp             EECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             ecCHHHHHHHHhcCCCCCCCcCCeEEEe
Confidence            9999999999999888888888776643

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.8e-42  Score=313.61  Aligned_cols=160  Identities=45%  Similarity=0.691  Sum_probs=147.3

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeCccccCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ...+++|||||++++|+.|+|+||||++.||+||+||++||+|+.        +| |+|+.||||||+|||||||+..++
T Consensus        12 p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~FhRvi~~f~iQgGd~~~~~   83 (188)
T 3ich_A           12 PKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEK--------GFGYKNSKFHRVIKDFMIQGGDFTRGD   83 (188)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCSSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccC--------CccccCCEEEEEECCCEEEcCCccCCC
Confidence            344789999999999999999999999999999999999998754        56 999999999999999999977789


Q ss_pred             CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      |+||.|+||+.|+||++.++|++     +|+              |||||.   |       |+  +++||||||+.   
T Consensus        84 g~gg~si~g~~f~dE~~~l~h~~-----~G~--------------lsmAn~---g-------p~--tngSQFfIt~~---  129 (188)
T 3ich_A           84 GTGGKSIYGERFPDENFKLKHYG-----PGW--------------VSMANA---G-------KD--TNGSQFFITTV---  129 (188)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS---
T ss_pred             CCCCccccCCcccccccCcccCC-----CeE--------------EEEccC---C-------CC--CcccEEEEECC---
Confidence            99999999999999999999998     899              999999   8       99  99999999999   


Q ss_pred             cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102         166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC  245 (426)
Q Consensus       166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~  245 (426)
                          +++ |||+                                                             +|++||+
T Consensus       130 ----~~~-~LDg-------------------------------------------------------------~~tVFG~  143 (188)
T 3ich_A          130 ----KTA-WLDG-------------------------------------------------------------KHVVFGK  143 (188)
T ss_dssp             ----CCG-GGTT-------------------------------------------------------------TSCEEEE
T ss_pred             ----CCc-ccCC-------------------------------------------------------------CeeEEEE
Confidence                999 9999                                                             9999999


Q ss_pred             hhccccHHHHHhhchhh-CCcccccchhhh
Q psy6102         246 VRQGFGVAREVSYVEAE-NDKPLVLNQMED  274 (426)
Q Consensus       246 VieGldvl~~I~~l~~~-~~~P~~~i~ilk  274 (426)
                      |++||+++++|+.+.+. .++|...+.|.+
T Consensus       144 Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~  173 (188)
T 3ich_A          144 VLEGMEVVRKVESTKTDSRDKPLKDVIIAD  173 (188)
T ss_dssp             EEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             EeCCHHHHHHHHhCCcCCCCeECCCEEEEE
Confidence            99999999999999984 457877666543

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=3.9e-42  Score=312.68  Aligned_cols=164  Identities=44%  Similarity=0.675  Sum_probs=150.5

Q ss_pred             cccccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeCcc
Q psy6102           3 KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGGDI   81 (426)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G~~   81 (426)
                      .++....+|+|||||++++|+.|+|+||||++.||+||+||++||+|+.        +| |+|+.||||+|+|||||||+
T Consensus        20 ~~~~~~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~--------g~~Y~g~~FhRvi~~f~iQgGd~   91 (193)
T 3k2c_A           20 GSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPK--------GEGYKGSTFHRIIPGFMVQGGDY   91 (193)
T ss_dssp             CCCC--CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCT--------TSSSTTCBEEEEETTTEEEECCT
T ss_pred             ccccccCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhcccc--------CCcccCCEEEEEeCCCEEEeCCC
Confidence            3566788999999999999999999999999999999999999999755        45 99999999999999999998


Q ss_pred             ccCCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEe
Q psy6102          82 TNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTV  161 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~  161 (426)
                      +.++|+|+.|+||..|++|++.++|+.     ||+              ||||+.   |       |+  +++||||||+
T Consensus        92 ~~~~g~gg~si~g~~f~dE~~~l~h~~-----~G~--------------lsmAn~---g-------p~--t~gSQFFIt~  140 (193)
T 3k2c_A           92 TAHNGTGGRSIYGEKFPDENFELKHTK-----EGI--------------LSMANC---G-------AH--TNGSQFFITL  140 (193)
T ss_dssp             TTSSSSCCCCTTSSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEES
T ss_pred             CCCCCcCCcccCCCcccccccccccCC-----CcE--------------EEEEeC---C-------CC--CCccEEEEEC
Confidence            888999999999999999999999998     999              999999   8       99  9999999999


Q ss_pred             eccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccc
Q psy6102         162 SFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNG  241 (426)
Q Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (426)
                      +       +++ +||+                                                             +|+
T Consensus       141 ~-------~~~-~LDg-------------------------------------------------------------~~t  151 (193)
T 3k2c_A          141 G-------KTQ-WLDE-------------------------------------------------------------KHV  151 (193)
T ss_dssp             S-------CCG-GGTT-------------------------------------------------------------TSC
T ss_pred             C-------CCc-ccCC-------------------------------------------------------------Ccc
Confidence            9       999 9999                                                             999


Q ss_pred             eechhhccccHHHHHhhchhhCCccc--ccchhhh
Q psy6102         242 IFGCVRQGFGVAREVSYVEAENDKPL--VLNQMED  274 (426)
Q Consensus       242 vFG~VieGldvl~~I~~l~~~~~~P~--~~i~ilk  274 (426)
                      +||+|++|++++++|+.+.+++++|.  ..+.|.+
T Consensus       152 VFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v~I~~  186 (193)
T 3k2c_A          152 VFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRD  186 (193)
T ss_dssp             EEEEEEECHHHHHHHHTTCCTTCCCCTTCCEEEEE
T ss_pred             EEEEEeCCHHHHHHHHhcCCCCCcCccCccEEEEE
Confidence            99999999999999999999888888  6665543

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=8e-42  Score=309.50  Aligned_cols=161  Identities=46%  Similarity=0.720  Sum_probs=149.1

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      ...+++|||||+|++++.|+|+||||++.||+||+||++||++++|       .+|+|+.||||+|+|||||||++.++|
T Consensus         9 p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g-------~~Y~g~~FhRvi~~f~iQgGd~~~~~g   81 (185)
T 4fru_A            9 PKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKG-------FGYKDSKFHRVIKDFMIQGGDFTRGDG   81 (185)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS-------CCSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCC-------CeEcCCEEEEeeCCCeEEECCCCCCCC
Confidence            4568999999999999999999999999999999999999987542       269999999999999999999998999


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      +||.|++|..|++|++.++|+.     ||+              |||||.   |       |+  +++||||||+.    
T Consensus        82 ~gg~si~g~~f~de~~~~~h~~-----~G~--------------lsma~~---g-------p~--t~~SQFfI~~~----  126 (185)
T 4fru_A           82 TGGKSIYGERFPDENFKLKHYG-----PGW--------------VSMANA---G-------KD--TNGSQFFITTV----  126 (185)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS----
T ss_pred             CCCccccCCccCccccccCcCC-----CeE--------------EEEeeC---C-------CC--CcceEEEEEeC----
Confidence            9999999999999999999998     999              999999   8       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +++ |||+                                                             +|++||+|
T Consensus       127 ---~~~-~Ld~-------------------------------------------------------------~~~vFG~V  141 (185)
T 4fru_A          127 ---KTA-WLDG-------------------------------------------------------------KHVVFGKV  141 (185)
T ss_dssp             ---CCG-GGTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---CCc-ccCC-------------------------------------------------------------CccEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhh-CCcccccchhhh
Q psy6102         247 RQGFGVAREVSYVEAE-NDKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~~-~~~P~~~i~ilk  274 (426)
                      ++||+++++|+.+.+. +++|...+.|.+
T Consensus       142 v~G~dvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 4fru_A          142 LEGMEVVRKVETTKTDGRDKPLKDVTIAD  170 (185)
T ss_dssp             EECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             eCCHHHHHHHHhCCCCCCCcCCCCEEEEE
Confidence            9999999999999984 578888776654

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=3.2e-41  Score=301.65  Aligned_cols=155  Identities=43%  Similarity=0.650  Sum_probs=113.3

Q ss_pred             eEEEEEEEC--C---eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCcccc-ccCCcccccccccEEeeCccccCC
Q psy6102          12 IVFLDVSIG--E---EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus        12 ~~~~~~~~~--~---~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      +||||++|+  +   |+.|+|+||||++.||+||+||++||+|++        +| |+|+.||||+|+|||||||+..++
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~fhRvi~~f~iQgGd~~~~~   75 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPA--------GEGYRESTFHRIIPNFMIQGGDFTRGN   75 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCT--------TTSSTTCBCCEEETTTEEEECC-----
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCC--------CcccCCCEEEEEeCCCEEEeCCcCCCC
Confidence            899999998  6   555999999999999999999999999755        45 999999999999999999976789


Q ss_pred             CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      |+||+|+||++|+||++.++|++     ||+              ||||+.   |       |+  +++||||||+.   
T Consensus        76 g~gg~si~g~~f~dE~~~~~h~~-----~G~--------------lsmA~~---g-------p~--t~gSQFfIt~~---  121 (172)
T 2c3b_A           76 GTGGRSIYGDKFADENFSRKHDK-----KGI--------------LSMANA---G-------PN--TNGSQFFITTA---  121 (172)
T ss_dssp             -----------------CHHHHH-----TCE--------------EEEC---------------------CEEEECS---
T ss_pred             CCCCcccCCCcccCcccccccCC-----CeE--------------EEEeeC---C-------CC--CcccEEEEECC---
Confidence            99999999999999998999998     899              999999   8       99  99999999999   


Q ss_pred             cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102         166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC  245 (426)
Q Consensus       166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~  245 (426)
                          +++ |||+                                                             +|++||+
T Consensus       122 ----~~~-~LDg-------------------------------------------------------------~~tvFG~  135 (172)
T 2c3b_A          122 ----VTS-WLDG-------------------------------------------------------------KHVVFGE  135 (172)
T ss_dssp             ----CCT-TCCS-------------------------------------------------------------CCEEEEE
T ss_pred             ----CCC-ccCC-------------------------------------------------------------CeeEEEE
Confidence                999 9999                                                             9999999


Q ss_pred             hhc--cccHHHHHhhchhhCC--cccccchhhh
Q psy6102         246 VRQ--GFGVAREVSYVEAEND--KPLVLNQMED  274 (426)
Q Consensus       246 Vie--Gldvl~~I~~l~~~~~--~P~~~i~ilk  274 (426)
                      |++  |++++++|+.+.+..+  +|..++.|.+
T Consensus       136 Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~  168 (172)
T 2c3b_A          136 VADEKSYSVVKEIEALGSSSGSVRSNTRPKIVN  168 (172)
T ss_dssp             ECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEE
T ss_pred             EEecCCHHHHHHHHhCCCCCCCccCCCCeEEEe
Confidence            999  9999999999988654  7887776643

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.9e-40  Score=309.75  Aligned_cols=168  Identities=24%  Similarity=0.386  Sum_probs=141.5

Q ss_pred             cccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCC---C----ccc--c-ccCCccccccccc
Q psy6102           5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL---G----KAL--H-FTGSHFHRIIPQF   74 (426)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~---~----k~~--~-y~~~~f~rv~~~~   74 (426)
                      .....+++||||++|++|+.|+|+||||++.||+||+||++||+|++.+-..   +    +.|  | |+|+.||||||+|
T Consensus         9 p~~~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~F   88 (234)
T 2ose_A            9 PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN   88 (234)
T ss_dssp             CCCCSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTT
T ss_pred             CcCCCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCC
Confidence            3456789999999999999999999999999999999999999986221100   0    114  6 9999999999999


Q ss_pred             EEeeCccccCCCCCCccccCCC-----cCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeee----ccccCCCCCC
Q psy6102          75 MIQGGDITNFNGTGGESIYGPC-----FEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVC----LFSLGSGLGL  145 (426)
Q Consensus        75 ~iq~G~~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~  145 (426)
                      ||||||+..++|+||+|+||+.     |+  .+.++|++     +|+              |||||    .   |     
T Consensus        89 miQgGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~-----~G~--------------lsMAn~~~~~---g-----  139 (234)
T 2ose_A           89 YIVSGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHES-----KGL--------------LSLVPYTDES---G-----  139 (234)
T ss_dssp             EEEECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCS-----TTE--------------EEECCEECTT---S-----
T ss_pred             EEEcCCccCCCCCCCccccCCccCccccc--CcCccCCC-----CCE--------------EEEecccccC---C-----
Confidence            9999998778999999999988     77  46888988     899              99999    7   7     


Q ss_pred             CCCCCccccceEEEEeeccccccCc------hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccC
Q psy6102         146 GLASTLVGSYQFSCTVSFLNTFTNN------CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETG  219 (426)
Q Consensus       146 ~~~~~~~~~sqF~i~~~~~~~~~~~------~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (426)
                        |+  ++|||||||+.       +      ++ |||+                                          
T Consensus       140 --pn--tngSQFFIt~~-------~~~~~~g~p-~LDg------------------------------------------  165 (234)
T 2ose_A          140 --NR--YYDSTFMITLD-------DIRPSNVLD-ELDR------------------------------------------  165 (234)
T ss_dssp             --CE--EBCSCEEEESS-------CCCTTSSGG-GSCT------------------------------------------
T ss_pred             --CC--CccceEEEEec-------CccccCCCc-ccCC------------------------------------------
Confidence              89  99999999999       7      89 9999                                          


Q ss_pred             CCCccchhHHHHHhhhcccccceechhhccccHHHHHhhchhhC-Ccccccchhhh
Q psy6102         220 RGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYVEAEN-DKPLVLNQMED  274 (426)
Q Consensus       220 ~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l~~~~-~~P~~~i~ilk  274 (426)
                                         +|++||+|++||+++++|+.+.+.. ++|...+.|.+
T Consensus       166 -------------------~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~  202 (234)
T 2ose_A          166 -------------------DQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGK  202 (234)
T ss_dssp             -------------------TSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEE
T ss_pred             -------------------CeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEE
Confidence                               9999999999999999999999854 88888776644

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=2.2e-39  Score=286.49  Aligned_cols=148  Identities=34%  Similarity=0.505  Sum_probs=136.1

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG   89 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (426)
                      .+.|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||++ ++|+||
T Consensus         5 ~~~v~~~T~~-----G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg   68 (160)
T 2fu0_A            5 PKSAIIYTTM-----GDIHISLFYKECKKTVQNFSVHSI----------NGYYNNCIFHRVIKHFMVQTGDPS-GDGTGG   68 (160)
T ss_dssp             CCEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEEecC-----ccEEEEEeCCCChHHHHHHHHHhc----------cCccCCCEEEEEECCCEEEeCCcC-CCCCCC
Confidence            5678888765     999999999999999999999996          478999999999999999999996 789999


Q ss_pred             ccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          90 ESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        90 ~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      +|+||++|+||+. .++|++     +|+              ||||+.   |       |+  +++||||||+.      
T Consensus        69 ~si~g~~~~dE~~~~l~h~~-----~G~--------------lsmA~~---g-------p~--s~~SQFfI~~~------  111 (160)
T 2fu0_A           69 ESIWGNEFEDEFFDHLNHSK-----PFM--------------VSMANC---G-------PN--TNGSQFFITTV------  111 (160)
T ss_dssp             CCTTSSCBCCCCBTTBCSSS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS------
T ss_pred             CcccCCCccccccCCcccCC-----ceE--------------EEEecC---C-------CC--CcccEEEEECC------
Confidence            9999999999987 588988     899              999999   8       99  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       ++| |||+                                                             +|++||+|++
T Consensus       112 -~~~-~Ldg-------------------------------------------------------------~~tvFG~Vv~  128 (160)
T 2fu0_A          112 -PCP-WLDF-------------------------------------------------------------KHTVFGKVTQ  128 (160)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -CCC-ccCC-------------------------------------------------------------CcEEEEEEEc
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchhh-CCcccccchhh
Q psy6102         249 GFGVAREVSYVEAE-NDKPLVLNQME  273 (426)
Q Consensus       249 Gldvl~~I~~l~~~-~~~P~~~i~il  273 (426)
                      |++++++|+.+++. .++|..++.|.
T Consensus       129 G~dvv~~I~~~~t~~~~~P~~~v~I~  154 (160)
T 2fu0_A          129 GSKIVLDIEKVRTDKRDKPLEDIKIL  154 (160)
T ss_dssp             CHHHHHHHHTSCBCTTSCBSSCCBEE
T ss_pred             CHHHHHHHHhCCcCCCCCcCCCeEEE
Confidence            99999999999984 68888776654

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.1e-39  Score=288.22  Aligned_cols=150  Identities=41%  Similarity=0.588  Sum_probs=138.0

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      ..++.|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||++ ++|+
T Consensus         9 ~~~~~v~l~t~~-----G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~   72 (166)
T 2x7k_A            9 WQPPNVYLETSM-----GIIVLELYWKHAPKTCKNFAELAR----------RGYYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (166)
T ss_dssp             CCCSEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHH----------HTTTTTEECCEEETTTEEEECCTT-SSSS
T ss_pred             cCCCEEEEEeCC-----CcEEEEEccCCCCHHHHHHHHHHh----------cCCCCCCEEEEEECCCEEEcCCCC-CCCC
Confidence            367899999975     999999999999999999999995          578999999999999999999997 7899


Q ss_pred             CCccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          88 GGESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        88 ~~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      ||+|+||..|+||+ ..++|++     ||+              ||||+.   |       |+  +++||||||++    
T Consensus        73 gg~si~g~~~~dE~~~~l~h~~-----~G~--------------lsmAn~---g-------p~--s~gSQFfI~~~----  117 (166)
T 2x7k_A           73 GGASIYGKQFEDELHPDLKFTG-----AGI--------------LAMANA---G-------PD--TNGSQFFVTLA----  117 (166)
T ss_dssp             CCCCTTSSCBCCCCCTTSCCCS-----TTE--------------EEECBS---S-------TT--CBCSCEEEESS----
T ss_pred             CCCccCCCccccccccccCCCC-----CeE--------------EEEeeC---C-------CC--CccceEEEECC----
Confidence            99999999999998 4788988     899              999999   8       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +++ |||+                                                             +|++||+|
T Consensus       118 ---~~~-~Ldg-------------------------------------------------------------~~tvFG~V  132 (166)
T 2x7k_A          118 ---PTQ-WLDG-------------------------------------------------------------KHTIFGRV  132 (166)
T ss_dssp             ---CCG-GGTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---CCC-ccCC-------------------------------------------------------------CeeEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhh-CCcccccchhh
Q psy6102         247 RQGFGVAREVSYVEAE-NDKPLVLNQME  273 (426)
Q Consensus       247 ieGldvl~~I~~l~~~-~~~P~~~i~il  273 (426)
                      ++|++++++|+.+++. .++|..++.|.
T Consensus       133 v~G~dvv~~I~~~~t~~~~~P~~~i~I~  160 (166)
T 2x7k_A          133 CQGIGMVNRVGMVETNSQDRPVDDVKII  160 (166)
T ss_dssp             EECHHHHHHHTTSCBCTTSCBSSCCEEE
T ss_pred             EcCHHHHHHHHcCCcCCCCCcCCCeEEE
Confidence            9999999999999984 46888776654

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=4.3e-39  Score=291.64  Aligned_cols=158  Identities=34%  Similarity=0.436  Sum_probs=140.0

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCC-----CccccccCCcccccccccEEeeCcc
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-----GKALHFTGSHFHRIIPQFMIQGGDI   81 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~-----~k~~~y~~~~f~rv~~~~~iq~G~~   81 (426)
                      .+.++.|.|+++.     |+|+||||++.||+||+||++||+|++++...     .+.+||+|+.||||||+|||||||+
T Consensus        20 ~~~~~~v~l~t~~-----G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~   94 (191)
T 1w74_A           20 PLATATATLHTNR-----GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP   94 (191)
T ss_dssp             -CCSEEEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCT
T ss_pred             CCCCeEEEEEecc-----eeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCC
Confidence            4556888888775     99999999999999999999999999886432     2468999999999999999999998


Q ss_pred             ccCCCCCCccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEE
Q psy6102          82 TNFNGTGGESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCT  160 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~  160 (426)
                      . ++|+||   +|+.|+||+ +.++|++     ||+              |||||.   |       |+  +++||||||
T Consensus        95 ~-g~G~gg---~g~~f~dE~~~~l~h~~-----~G~--------------lsMAn~---g-------pn--tngSQFFIt  139 (191)
T 1w74_A           95 T-GTGRGG---PGYKFADEFHPELQFDK-----PYL--------------LAMANA---G-------PG--TNGSQFFIT  139 (191)
T ss_dssp             T-SSSSCC---SSCCBCCCCCTTCCSCS-----SSE--------------EEECCS---S-------TT--CBSSCEEEE
T ss_pred             C-CCCCCC---CCCccccccccCCCcCC-----CcE--------------EEEeeC---C-------CC--CccceEEEE
Confidence            5 678888   489999995 6889988     899              999999   8       99  999999999


Q ss_pred             eeccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhccccc
Q psy6102         161 VSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKN  240 (426)
Q Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (426)
                      +.       ++| |||+                                                             +|
T Consensus       140 ~~-------~~~-~LDg-------------------------------------------------------------~~  150 (191)
T 1w74_A          140 VG-------KTP-HLNR-------------------------------------------------------------RH  150 (191)
T ss_dssp             SS-------CCG-GGTT-------------------------------------------------------------TS
T ss_pred             cC-------CCc-ccCC-------------------------------------------------------------Ce
Confidence            99       999 9999                                                             99


Q ss_pred             ceechhhc--cccHHHHHhhchh-hCCcccccchhh
Q psy6102         241 GIFGCVRQ--GFGVAREVSYVEA-ENDKPLVLNQME  273 (426)
Q Consensus       241 ~vFG~Vie--Gldvl~~I~~l~~-~~~~P~~~i~il  273 (426)
                      ++||+|++  |++++++|+.+++ ..++|..++.|.
T Consensus       151 tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~I~  186 (191)
T 1w74_A          151 TIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE  186 (191)
T ss_dssp             CEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEE
T ss_pred             eEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeEEE
Confidence            99999999  9999999999998 457888777664

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=5.6e-39  Score=287.75  Aligned_cols=148  Identities=37%  Similarity=0.503  Sum_probs=134.4

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG   89 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (426)
                      ...|.|+|+     .|+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||+. ++|+||
T Consensus        21 ~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg   84 (176)
T 2a2n_A           21 SDSAIIHTS-----MGDIHTKLFPVECPKTVENFCVHSR----------NGYYNGHTFHRIIKGFMIQTGDPT-GTGMGG   84 (176)
T ss_dssp             CSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhh----------cCccCCCEEEEEECCcEEEccCCC-CCCCCC
Confidence            445566554     5999999999999999999999996          478999999999999999999996 789999


Q ss_pred             ccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          90 ESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        90 ~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      .|+||+.|+||++ .++|++     +|+              ||||+.   |       |+  +++||||||+.      
T Consensus        85 ~si~g~~~~dE~~~~l~h~~-----~G~--------------lsmA~~---g-------p~--s~gSQFFIt~~------  127 (176)
T 2a2n_A           85 ESIWGGEFEDEFHSTLRHDR-----PYT--------------LSMANA---G-------SN--TNGSQFFITVV------  127 (176)
T ss_dssp             CCTTSSCBCCCCCTTCCSCS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS------
T ss_pred             CcccCCccccccccccccCC-----ceE--------------EEEEeC---C-------CC--CcccEEEEECC------
Confidence            9999999999987 688988     899              999999   8       99  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       +++ |||+                                                             +|++||+|++
T Consensus       128 -~~~-~LDg-------------------------------------------------------------~~tVFG~Vv~  144 (176)
T 2a2n_A          128 -PTP-WLDN-------------------------------------------------------------KHTVFGRVTK  144 (176)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -CCC-ccCC-------------------------------------------------------------CeeEEEEEeC
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchhh--CCcccccchhh
Q psy6102         249 GFGVAREVSYVEAE--NDKPLVLNQME  273 (426)
Q Consensus       249 Gldvl~~I~~l~~~--~~~P~~~i~il  273 (426)
                      |++++++|+.+++.  .++|..++.|.
T Consensus       145 Gmdvv~~I~~~~t~~~~~~P~~~v~I~  171 (176)
T 2a2n_A          145 GMEVVQRISNVKVNPKTDKPYEDVSII  171 (176)
T ss_dssp             CHHHHHHHHTSCBCTTTCCBSSCCBEE
T ss_pred             CHHHHHHHHcCCccCCCCccCCCeEEE
Confidence            99999999999886  67888776654

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.7e-38  Score=281.43  Aligned_cols=146  Identities=38%  Similarity=0.535  Sum_probs=132.4

Q ss_pred             eEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCcc
Q psy6102          12 IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGES   91 (426)
Q Consensus        12 ~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~   91 (426)
                      +|.|+|+     .|+|+||||++.||+||+||++||++          +||+|+.||||+|+|||||||++ ++|+||+|
T Consensus         2 ~v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~s   65 (161)
T 2ok3_A            2 SVTLHTD-----VGDIKIEVFCERTPKTCENFLALCAS----------NYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNS   65 (161)
T ss_dssp             EEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCC
T ss_pred             EEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhhh----------cccCCCEEEEEECCCEEecCCCC-CCCCCCCc
Confidence            4556554     59999999999999999999999964          67999999999999999999997 78999999


Q ss_pred             ccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102          92 IYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN  170 (426)
Q Consensus        92 ~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~  170 (426)
                      +||.+|+||+. .++|++     ||+              ||||+.   |       |+  +++||||||++       +
T Consensus        66 i~g~~~~dE~~~~l~h~~-----~G~--------------lsma~~---g-------p~--s~~SQFfI~~~-------~  107 (161)
T 2ok3_A           66 IWGKKFEDEYSEYLKHNV-----RGV--------------VSMANN---G-------PN--TNGSQFFITYG-------K  107 (161)
T ss_dssp             TTSSCBCCCCCTTCCSCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS-------C
T ss_pred             ccCCccccccCcCcCcCC-----CeE--------------EEEecC---C-------CC--CcceEEEEEcC-------C
Confidence            99999999985 688888     899              999999   8       99  99999999999       9


Q ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102         171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF  250 (426)
Q Consensus       171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl  250 (426)
                      ++ |||+                                                             +|++||+|++|+
T Consensus       108 ~~-~Ldg-------------------------------------------------------------~~tvFG~Vv~G~  125 (161)
T 2ok3_A          108 QP-HLDM-------------------------------------------------------------KYTVFGKVIDGL  125 (161)
T ss_dssp             CG-GGTT-------------------------------------------------------------TSCEEEEEEECH
T ss_pred             CC-ccCC-------------------------------------------------------------CEeEEEEEeCCH
Confidence            99 9999                                                             999999999999


Q ss_pred             cHHHHHhhchhhC--Ccccccchhh
Q psy6102         251 GVAREVSYVEAEN--DKPLVLNQME  273 (426)
Q Consensus       251 dvl~~I~~l~~~~--~~P~~~i~il  273 (426)
                      +++++|+.+++..  ++|..++.|.
T Consensus       126 dvv~~I~~~~~~~~~~~P~~~v~I~  150 (161)
T 2ok3_A          126 ETLDELEKLPVNEKTYRPLNDVHIK  150 (161)
T ss_dssp             HHHHHHHTCCBCTTTCCBSSCCBEE
T ss_pred             HHHHHHHhCCccCCCCCcCCCeEEE
Confidence            9999999999843  7888776654

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-38  Score=289.83  Aligned_cols=151  Identities=35%  Similarity=0.529  Sum_probs=138.2

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      ..+++|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||++ ++|+
T Consensus        36 ~~~~~V~l~T~~-----G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Y~g~~FhRVi~~f~iQgGd~~-~~g~   99 (196)
T 2b71_A           36 TERGYITIYTNL-----GDFEVELYWYHSPKTCLNFYTLCE----------MGFYDNTIFHRVIPNFVIQGGDPT-GTGK   99 (196)
T ss_dssp             HHSCEEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEEEETT-SSSS
T ss_pred             CCCcEEEEEeCC-----CCEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCCEEEEEeCCcEEEcCCCC-CCCC
Confidence            457899999875     999999999999999999999996          478999999999999999999997 7899


Q ss_pred             CCccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          88 GGESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        88 ~~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      ||+|+||.+|++|+ ..++|++     ||+              ||||+.   |       |+  +++||||||++    
T Consensus       100 gg~si~g~~~~dE~~~~l~h~~-----~G~--------------lsMAn~---g-------pn--s~gSQFFIt~~----  144 (196)
T 2b71_A          100 GGKSIYGEYFEDEINKELKHTG-----AGI--------------LSMSNN---G-------PN--TNSSQFFITLA----  144 (196)
T ss_dssp             CCCBTTBSCBCCCCCTTCCCCS-----TTE--------------EEECCS---S-------TT--CBSSCEEEESS----
T ss_pred             CCCccCCCcccccccCCcCcCC-----CeE--------------EEEccC---C-------CC--CcccEEEEECC----
Confidence            99999999999996 5788888     899              999999   8       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +++ |||+                                                             +|++||+|
T Consensus       145 ---~~~-~LDg-------------------------------------------------------------~~tVFG~V  159 (196)
T 2b71_A          145 ---PLP-HLDG-------------------------------------------------------------KHTIFARV  159 (196)
T ss_dssp             ---CCG-GGTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---CCC-ccCC-------------------------------------------------------------CEeEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         247 RQGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ++|++++++|+.+++ ..++|..++.|.+
T Consensus       160 v~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  188 (196)
T 2b71_A          160 SKNMTCIENIASVQTTATNKPIFDLKILR  188 (196)
T ss_dssp             EECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             ecCHHHHHHHHhCCcCCCCCCCCCeEEEE
Confidence            999999999999998 4578887766643

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2e-38  Score=288.05  Aligned_cols=151  Identities=39%  Similarity=0.578  Sum_probs=136.9

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      .....|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||||+|||||||++ ++|+
T Consensus        17 ~~~~~v~l~T~~-----G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Ydg~~FhRVi~~f~iQgGd~~-~~g~   80 (197)
T 1zkc_A           17 RGSGYVRLHTNK-----GDLNLELHCDLTPKTCENFIRLCK----------KHYYDGTIFHRSIRNFVIQGGDPT-GTGT   80 (197)
T ss_dssp             CSCEEEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEECCTT-SSSS
T ss_pred             CCCcEEEEEeCC-----ccEEEEEcCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCCEEEcCCCC-CCCC
Confidence            345677887765     999999999999999999999995          478999999999999999999997 7899


Q ss_pred             CCccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          88 GGESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        88 ~~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      ||+|+||.+|+||+ ..++|+.     +|+              ||||+.   |       |+  +++||||||+.    
T Consensus        81 Gg~si~g~~f~dE~~~~l~h~~-----~G~--------------lsMAn~---g-------p~--sngSQFFIt~~----  125 (197)
T 1zkc_A           81 GGESYWGKPFKDEFRPNLSHTG-----RGI--------------LSMANS---G-------PN--SNRSQFFITFR----  125 (197)
T ss_dssp             CCCBTTBSCBCCCCCTTCCSCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS----
T ss_pred             CCCccCCCccccccCcCcCCCC-----ceE--------------EEEecC---C-------CC--CcccEEEEEcC----
Confidence            99999999999995 7788988     899              999999   8       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +++ +||+                                                             +|++||+|
T Consensus       126 ---~~~-~LDg-------------------------------------------------------------~~tVFG~V  140 (197)
T 1zkc_A          126 ---SCA-YLDK-------------------------------------------------------------KHTIFGRV  140 (197)
T ss_dssp             ---CCG-GGTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---CCC-ccCC-------------------------------------------------------------CccEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhhC--Ccccccchhhh
Q psy6102         247 RQGFGVAREVSYVEAEN--DKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~~~--~~P~~~i~ilk  274 (426)
                      ++|++++++|+.+++..  ++|..++.|.+
T Consensus       141 v~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~  170 (197)
T 1zkc_A          141 VGGFDVLTAMENVESDPKTDRPKEEIRIDA  170 (197)
T ss_dssp             EECHHHHHHHHHSCBCTTTCCBSSCCEEEE
T ss_pred             EcCHHHHHHHHcCCCCCCCCCcCCCeEEEE
Confidence            99999999999999844  78887766643

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=3.6e-38  Score=284.67  Aligned_cols=154  Identities=34%  Similarity=0.427  Sum_probs=135.4

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      ....|.|+|     +.|+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||++ ++|+|
T Consensus        15 ~~~~v~i~t-----~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~-~~g~g   78 (185)
T 2poe_A           15 YFQGVRIIT-----NYGDLKFELFCSQCPKACKNFLALSA----------SGYYKNTIFHKNIKGFIIQGGDPT-GTGKG   78 (185)
T ss_dssp             CCCEEEEEE-----TTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTEEEEEECTTSEEEEEETT-SSSSC
T ss_pred             CceEEEEEe-----cCccEEEEEeCCCCcHHHHHHHHHhc----------cCCCCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            345566665     46999999999999999999999996          478999999999999999999997 78999


Q ss_pred             CccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102          89 GESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF  167 (426)
Q Consensus        89 ~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~  167 (426)
                      |.|+||.+|++|+ ..++|++     ||+              ||||+.   |+   ..+|+  +++||||||++     
T Consensus        79 g~si~g~~~~dE~~~~l~h~~-----~G~--------------lsmA~~---g~---~~~p~--s~gSQFFIt~~-----  126 (185)
T 2poe_A           79 GESIYGRYFDDEIYPELKYDR-----RGI--------------LSMASK---GA---SKKPN--TNGSQFFITYS-----  126 (185)
T ss_dssp             CCBTTBSCBCCCCCTTSCCCS-----TTE--------------EEECCS---CC----CCCS--CBCSCEEEESS-----
T ss_pred             CCccCCCcccccccCCCccCC-----CeE--------------EEEecC---CC---CCCCC--CccceEEEECC-----
Confidence            9999999999998 6888888     899              999998   62   12378  99999999999     


Q ss_pred             cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102         168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR  247 (426)
Q Consensus       168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi  247 (426)
                        +++ |||+                                                             +|++||+|+
T Consensus       127 --~~~-~LDg-------------------------------------------------------------~~tVFG~Vv  142 (185)
T 2poe_A          127 --SLP-QLNG-------------------------------------------------------------EYVIFGKLI  142 (185)
T ss_dssp             --CCG-GGTT-------------------------------------------------------------TSCEEEEEE
T ss_pred             --CCC-ccCC-------------------------------------------------------------CeeEEEEEe
Confidence              999 9999                                                             999999999


Q ss_pred             ccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         248 QGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       248 eGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      +|++++++|+.+++ .+++|..++.|.+
T Consensus       143 ~Gmdvv~~I~~~~t~~~~~P~~~v~I~~  170 (185)
T 2poe_A          143 DGFETLNTLENCPSDKSHKPIDEIIIKD  170 (185)
T ss_dssp             ECHHHHHHHHHSCBCTTSCBSSCCEEEE
T ss_pred             CCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            99999999999988 4578887766543

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=287.58  Aligned_cols=151  Identities=40%  Similarity=0.585  Sum_probs=138.3

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      ..+++|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||||+|||||||++ ++|+
T Consensus         9 ~~~~~V~l~T~~-----G~I~ieL~~d~aP~tv~NF~~L~~----------~g~Ydg~~FhRVi~~F~iQgGd~~-~~g~   72 (203)
T 2k7n_A            9 WQPPNVYLETSM-----GIIVLELYWKHAPKTCKNFAELAR----------RGYYNGTKFHRIIKDFMIQGGDPT-GTGR   72 (203)
T ss_dssp             CCCSEEEEEESS-----CEEEEEECTTTCTTHHHHHHHHHH----------HTCGGGCEEEEEETTTEEEEECSS-SSSS
T ss_pred             cCCCEEEEEeCC-----CcEEEEEccCCCcHHHHHHHHHHh----------cCccCCCEEEEEeCCcEEEcCCCC-CCCC
Confidence            367899999976     999999999999999999999995          578999999999999999999997 7899


Q ss_pred             CCccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          88 GGESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        88 ~~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      |+.|+||..|++|+ ..++|++     ||+              ||||+.   +       |+  +++||||||+.    
T Consensus        73 gg~si~g~~f~dE~~~~l~h~~-----~G~--------------lsMAn~---g-------pn--sngSQFFIt~~----  117 (203)
T 2k7n_A           73 GGASIYGKQFEDELHPDLKFTG-----AGI--------------LAMANA---G-------PD--TNGSQFFVTLA----  117 (203)
T ss_dssp             CCCTTSCSCBCCCCCCSSCCCS-----SCE--------------EEEEES---S-------TT--CEEEEEEEESS----
T ss_pred             CCCccCCCcccccccccccCCC-----CeE--------------EEEeeC---C-------CC--CcccEEEEEcC----
Confidence            99999999999998 4788988     899              999999   8       99  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +++ |||+                                                             +|++||+|
T Consensus       118 ---~~~-~LDg-------------------------------------------------------------~~tVFG~V  132 (203)
T 2k7n_A          118 ---PTQ-WLDG-------------------------------------------------------------KHTIFGRV  132 (203)
T ss_dssp             ---CCC-SSTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---CCC-ccCC-------------------------------------------------------------CeeEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchhh-CCcccccchhhh
Q psy6102         247 RQGFGVAREVSYVEAE-NDKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~~-~~~P~~~i~ilk  274 (426)
                      ++|++++++|+.+++. .++|..++.|.+
T Consensus       133 veGmdvv~kI~~~~t~~~~~P~~~V~I~~  161 (203)
T 2k7n_A          133 CQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (203)
T ss_dssp             ESCHHHHHHHHSCCEEETTEECCCCBEEE
T ss_pred             EcCHHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence            9999999999999984 468887766543

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=7.6e-38  Score=278.76  Aligned_cols=154  Identities=26%  Similarity=0.360  Sum_probs=129.1

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      .++++|+|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||||+|||||||++...  
T Consensus         2 ~~~~~v~~~t~~-----G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~--   64 (166)
T 1v9t_A            2 KGDPHVLLTTSA-----GNIELELDKQKAPVSVQNFVDYVN----------SGFYNNTTFHRVIPGFMIQGGGFTEQM--   64 (166)
T ss_dssp             CCSCEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEESSBCTTC--
T ss_pred             CCCeEEEEEeCC-----ccEEEEEcCCCCcHHHHHHHHHhc----------cCCCCCCEEEEEECCcEEEcCCcCcCC--
Confidence            578999999865     999999999999999999999995          578999999999999999999997432  


Q ss_pred             CCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102          88 GGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF  167 (426)
Q Consensus        88 ~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~  167 (426)
                       +.+.+|.+|++|+....|+.     +|+              |||||.   +.      |+  +++||||||+.     
T Consensus        65 -~~~~~g~~~~dE~~~~l~~~-----~G~--------------lsmA~~---~~------p~--t~gSQFfI~~~-----  108 (166)
T 1v9t_A           65 -QQKKPNPPIKNEADNGLRNT-----RGT--------------IAMART---AD------KD--SATSQFFINVA-----  108 (166)
T ss_dssp             -CBCCCCCCBCCCGGGSCCCC-----TTE--------------EEECCC---SS------TT--CBCSCEEEESS-----
T ss_pred             -CCCCCCCcccccccccccCC-----ceE--------------EEEeec---CC------CC--CccceEEEEeC-----
Confidence             23345888999987666666     899              999997   64      89  99999999999     


Q ss_pred             cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102         168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR  247 (426)
Q Consensus       168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi  247 (426)
                        +++ |||++                                                        ..+..|++||+|+
T Consensus       109 --~~~-~Ld~~--------------------------------------------------------~~~~~~tvFG~Vv  129 (166)
T 1v9t_A          109 --DNA-FLDHG--------------------------------------------------------QRDFGYAVFGKVV  129 (166)
T ss_dssp             --CCG-GGSCC--------------------------------------------------------SSCCCCCEEEEEE
T ss_pred             --Ccc-ccCCc--------------------------------------------------------cCcCCeeEEEEEe
Confidence              999 99980                                                        0001499999999


Q ss_pred             ccccHHHHHhhchhhC-----Ccccccchhh
Q psy6102         248 QGFGVAREVSYVEAEN-----DKPLVLNQME  273 (426)
Q Consensus       248 eGldvl~~I~~l~~~~-----~~P~~~i~il  273 (426)
                      +||+++++|+.+++..     ++|..++.|.
T Consensus       130 ~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~  160 (166)
T 1v9t_A          130 KGMDVADKISQVPTHDVGPYQNVPSKPVVIL  160 (166)
T ss_dssp             ECHHHHHHHHTSCEEEETTEEEEESSCCBEE
T ss_pred             cCHHHHHHHHhCCCCCCCccCCCcCCCeEEE
Confidence            9999999999998843     5676665553

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1e-37  Score=285.75  Aligned_cols=151  Identities=33%  Similarity=0.482  Sum_probs=130.5

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeC-----ccc
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGG-----DIT   82 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G-----~~~   82 (426)
                      ..+..|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+|+||||||     |++
T Consensus         4 ~~~~~v~l~T~~-----G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~   68 (201)
T 3bo7_A            4 KKKGYLRIVTTQ-----GSLNIELHADMAPRACDSFLRLCA----------VKYFDDTIFHRCIRNFMIQGGRAELRQPS   68 (201)
T ss_dssp             -CCEEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEECCGGGCCC-
T ss_pred             CCceEEEEEeCC-----CCEEEEEcCCCCcHHHHHHHHHHh----------cCccCCCEEEEeeCCCEEEcCcccccCCC
Confidence            346788888875     999999999999999999999996          478999999999999999999     987


Q ss_pred             cCCCCCCcccc-------CCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCcccc
Q psy6102          83 NFNGTGGESIY-------GPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGS  154 (426)
Q Consensus        83 ~~~~~~~~~~~-------~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  154 (426)
                       ++|+||.|+|       |..|+||. ..++|+.     +|+              ||||+.   |       |+  +++
T Consensus        69 -~~g~gg~si~~~~~~~~g~~f~dE~~~~l~h~~-----~G~--------------lsmA~~---g-------p~--s~g  116 (201)
T 3bo7_A           69 -KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQG-----IGV--------------LSMAND---G-------KH--SNL  116 (201)
T ss_dssp             -------CCSSCCCSSTTCCCBCCCCCTTCCCCS-----TTE--------------EEECCS---S-------TT--CBS
T ss_pred             -CCCCCCccccccccccCCCcccCcccCCCCcCC-----CcE--------------EEEeeC---C-------CC--Ccc
Confidence             7899999999       89999995 6788988     899              999999   8       99  999


Q ss_pred             ceEEEEeeccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhh
Q psy6102         155 YQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVK  234 (426)
Q Consensus       155 sqF~i~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  234 (426)
                      ||||||+.       +++ |||+                                                         
T Consensus       117 SQFFIt~~-------~~~-~LDg---------------------------------------------------------  131 (201)
T 3bo7_A          117 SEFFITFK-------SCE-HLNN---------------------------------------------------------  131 (201)
T ss_dssp             SCEEEESS-------CCG-GGTT---------------------------------------------------------
T ss_pred             cEEEEECC-------CCc-ccCC---------------------------------------------------------
Confidence            99999999       999 9999                                                         


Q ss_pred             hcccccceechhhccccHHHHHhhchhh-CCcccccchhhh
Q psy6102         235 KKKKKNGIFGCVRQGFGVAREVSYVEAE-NDKPLVLNQMED  274 (426)
Q Consensus       235 ~~~~~~~vFG~VieGldvl~~I~~l~~~-~~~P~~~i~ilk  274 (426)
                          .|++||+|++||+++++|+.+++. .++|..++.|.+
T Consensus       132 ----~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  168 (201)
T 3bo7_A          132 ----KHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEE  168 (201)
T ss_dssp             ----TSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEE
T ss_pred             ----CceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence                999999999999999999999984 478887666643

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=279.94  Aligned_cols=152  Identities=34%  Similarity=0.557  Sum_probs=135.2

Q ss_pred             ccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCC
Q psy6102           6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ..+.+++|+|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+|+|||||||++ ++
T Consensus        20 ~~~~~~~V~l~T~~-----G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~-~~   83 (185)
T 2hq6_A           20 EPPTNGKVLLKTTA-----GDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPT-GT   83 (185)
T ss_dssp             CCCCBCEEEEEETT-----EEEEEEEBTTTCHHHHHHHHHHHH----------TTTTTTEECCEEETTTEEEECCTT-SS
T ss_pred             CCCCCCEEEEEeCC-----ccEEEEEeCCCCcHHHHHHHHHhh----------cCccCCCEEEEEECCCEEEcCCCC-CC
Confidence            34567899999975     999999999999999999999996          478999999999999999999997 78


Q ss_pred             CCCCccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102          86 GTGGESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~  164 (426)
                      |+||+++||.+|+||+. .++|++     ||+              |||||.   |       |+  +++||||||++  
T Consensus        84 g~gg~si~g~~~~dE~~~~l~h~~-----~G~--------------lsMA~~---g-------~~--s~gSQFFIt~~--  130 (185)
T 2hq6_A           84 GSGGESIYGAPFKDEFHSRLRFNR-----RGL--------------VAMANA---G-------SH--DNGSQFFFTLG--  130 (185)
T ss_dssp             SSCCCCTTSSCBCCCCBTTBCSCS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS--
T ss_pred             CCCCCcccCCccccccccCcccCC-----CeE--------------EEEccC---C-------CC--CccceEEEECC--
Confidence            99999999999999986 678888     899              999999   8       89  99999999999  


Q ss_pred             ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102         165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG  244 (426)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG  244 (426)
                           +++ +||+                                                             +|++||
T Consensus       131 -----~~~-~LDg-------------------------------------------------------------~~tVFG  143 (185)
T 2hq6_A          131 -----RAD-ELNN-------------------------------------------------------------KHTIFG  143 (185)
T ss_dssp             -----CCG-GGTT-------------------------------------------------------------TSCEEE
T ss_pred             -----CCC-ccCC-------------------------------------------------------------CceEEE
Confidence                 999 9999                                                             999999


Q ss_pred             hhhccccHH--HHHhhchh-hCCcccccchhhh
Q psy6102         245 CVRQGFGVA--REVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       245 ~VieGldvl--~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      +|+ |++++  .+|+.+.+ .+++|..++.|.+
T Consensus       144 ~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~  175 (185)
T 2hq6_A          144 KVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKS  175 (185)
T ss_dssp             EEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEE
T ss_pred             EEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEE
Confidence            998 88764  56777777 5678887766643

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.3e-36  Score=283.31  Aligned_cols=159  Identities=27%  Similarity=0.447  Sum_probs=133.8

Q ss_pred             ccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCC
Q psy6102           6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ..+..++|+|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||||+|||||||++ ++
T Consensus        17 ~p~~~~~V~l~T~~-----G~I~ieL~~d~aP~tv~NF~~L~~----------~g~Ydgt~FhRVi~~FmiQgGdp~-~~   80 (232)
T 3bkp_A           17 QGSTRGKVVLHTSL-----GDLDVELWARECPLACRNFVQLCL----------EGYYVNTIFHRVVKDFIVQGGDPT-GT   80 (232)
T ss_dssp             CCSCBCEEEEEETT-----EEEEEEEBTTTCHHHHHHHHHHHH----------HTTTTTCBEEEEETTTEEEECCTT-SS
T ss_pred             cCCCCCEEEEEECC-----CcEEEEEcCCCCcHHHHHHHHHhh----------cCccCCCEEEEEeCCCEEEcCCCC-CC
Confidence            34567889999975     999999999999999999999995          478999999999999999999997 78


Q ss_pred             CCCCcccc--CCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCC-CCCC------CCccccc
Q psy6102          86 GTGGESIY--GPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLG-LGLA------STLVGSY  155 (426)
Q Consensus        86 ~~~~~~~~--~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~------~~~~~~s  155 (426)
                      |+||.|+|  |..|+||+. .++|+.     +|+              ||||+.   |...+ ..||      +  +++|
T Consensus        81 G~Gg~si~~~g~~f~dE~~~~l~h~~-----~G~--------------lsMA~~---g~~~~~~~n~e~g~~~~--sngS  136 (232)
T 3bkp_A           81 GRGGADTTFDGKPFDVETHPRLKFRY-----RGL--------------VGVANL---GRSSKDAENDERGRSLG--TNGN  136 (232)
T ss_dssp             SSCCCCCTTTTCCBCCCCCTTCCCCS-----TTE--------------EEECCC---C------------------CBCS
T ss_pred             CCCCCccccCCCccCCccccCcCcCC-----CeE--------------EEEecc---CCcccccccccccccCC--CcCC
Confidence            99999999  999999985 688888     899              999999   72000 0011      5  8999


Q ss_pred             eEEEEeeccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhh
Q psy6102         156 QFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKK  235 (426)
Q Consensus       156 qF~i~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  235 (426)
                      |||||++       +++ |||+                                                          
T Consensus       137 QFFIt~~-------~~p-~LDg----------------------------------------------------------  150 (232)
T 3bkp_A          137 QFFITLA-------RAD-VLNN----------------------------------------------------------  150 (232)
T ss_dssp             CEEEESS-------CCG-GGTT----------------------------------------------------------
T ss_pred             EEEEECC-------CCc-ccCC----------------------------------------------------------
Confidence            9999999       999 9999                                                          


Q ss_pred             cccccceechhhccccH--HHHHhhchh-hCCcccccchhhh
Q psy6102         236 KKKKNGIFGCVRQGFGV--AREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       236 ~~~~~~vFG~VieGldv--l~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                         +|++||+|+ |+++  +++|+.+++ .+++|..++.|.+
T Consensus       151 ---~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~  188 (232)
T 3bkp_A          151 ---AYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKS  188 (232)
T ss_dssp             ---TSCEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEE
T ss_pred             ---CccEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEE
Confidence               999999999 7766  789999888 5677877665543

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=5.2e-37  Score=272.85  Aligned_cols=152  Identities=22%  Similarity=0.265  Sum_probs=124.1

Q ss_pred             EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102          13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI   92 (426)
Q Consensus        13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~   92 (426)
                      |.|+|+     .|+|+||||++.||+||+||++||+          .+||+|+.||||||+|||||||++.+.   |.++
T Consensus         2 v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~   63 (164)
T 1lop_A            2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGM---KQKA   63 (164)
T ss_dssp             EEEEET-----TEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEECCEEETTTEEEESSEETTT---EECC
T ss_pred             EEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCceEecCCcccCC---CcCC
Confidence            566665     5999999999999999999999995          578999999999999999999997433   5667


Q ss_pred             cCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchh
Q psy6102          93 YGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCE  172 (426)
Q Consensus        93 ~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~  172 (426)
                      +|++|+||+....++.     ||+              |||||.   +.      |+  +++||||||+.       +++
T Consensus        64 ~g~~~~dE~~~~l~~~-----~G~--------------lsmA~~---~~------p~--s~gSQFfI~~~-------~~~  106 (164)
T 1lop_A           64 TKEPIKNEANNGLKNT-----RGT--------------LAMART---QA------PH--SATAQFFINVV-------DND  106 (164)
T ss_dssp             CCCCBCCCCCSSCCCC-----TTE--------------EEECCC---SS------TT--CBCSCEEEESS-------CCG
T ss_pred             CCCccccccccccccC-----ccE--------------EEEeec---CC------CC--CccceEEEEcC-------Ccc
Confidence            8999999986534445     799              999986   43      89  99999999999       899


Q ss_pred             hhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccH
Q psy6102         173 IHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGV  252 (426)
Q Consensus       173 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldv  252 (426)
                       |||++                                         ...            ..++.|++||+|++||++
T Consensus       107 -~Ld~~-----------------------------------------~~~------------~~~~~~tvFG~Vv~G~dv  132 (164)
T 1lop_A          107 -FLNFS-----------------------------------------GES------------LQGWGYCVFAEVVDGMDE  132 (164)
T ss_dssp             -GGSCC-----------------------------------------SSS------------TTTSCCCEEEEEEECHHH
T ss_pred             -ccCCc-----------------------------------------ccc------------ccCCceEEEEEEecCHHH
Confidence             99981                                         000            001259999999999999


Q ss_pred             HHHHhhchhh-----CCcccccchhh
Q psy6102         253 AREVSYVEAE-----NDKPLVLNQME  273 (426)
Q Consensus       253 l~~I~~l~~~-----~~~P~~~i~il  273 (426)
                      +++|+.+++.     .++|..++.|.
T Consensus       133 v~~I~~~~t~~~~~~~~~P~~~v~I~  158 (164)
T 1lop_A          133 VDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_dssp             HHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred             HHHHHhCCcCCccccCCCcCCCeEEE
Confidence            9999999885     36777766553

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=2.3e-36  Score=269.71  Aligned_cols=156  Identities=24%  Similarity=0.264  Sum_probs=127.5

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      .++.|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||||+|||||||++...   
T Consensus         2 p~~~v~l~T~~-----G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~---   63 (167)
T 3s6m_A            2 PGSMVELHTNH-----GVIKLELDEAKAPKTVENFLNYVK----------KGHYDGTIFHRVINGFMIQGGGFEPGL---   63 (167)
T ss_dssp             CCCEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHH----------HTTTTTEECCEEETTTEEEESSEETTT---
T ss_pred             CCcEEEEEeCC-----ceEEEEEeCCCCcHHHHHHHHHhh----------hcccCCCEeEEecCCcEEEeccccCCC---
Confidence            36789999875     999999999999999999999995          578999999999999999999997432   


Q ss_pred             CccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          89 GESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      +.+.+|.+|++|.....++.     ||+              |||||.   +.      |+  +++||||||+.      
T Consensus        64 ~~~~~~~~~~~E~~~~l~~~-----~G~--------------lsmA~~---~~------p~--t~gSQFfI~~~------  107 (167)
T 3s6m_A           64 KQKPTDAPIANEANNGLKND-----TYT--------------IAMART---ND------PH--SATAQFFINVN------  107 (167)
T ss_dssp             EECCCCCCBCCCGGGCCCCC-----TTE--------------EEECCC---SS------TT--CBCSCEEEESS------
T ss_pred             CCCCCCCccCCcccccccCC-----ccE--------------EEEecC---CC------CC--CccceEEEEcC------
Confidence            33456888999975444445     899              999995   43      89  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       +++ |||++                                          +.+           .+.+.|++||+|++
T Consensus       108 -~~~-~Ld~~------------------------------------------~~~-----------~~~~~~~VFG~Vv~  132 (167)
T 3s6m_A          108 -DNE-FLNHS------------------------------------------SPT-----------PQGWGYAVFGKVVE  132 (167)
T ss_dssp             -CCG-GGSCC------------------------------------------SSS-----------TTTCCCCEEEEEEE
T ss_pred             -Cch-hcCCc------------------------------------------ccc-----------cCCCCceEEEEEEc
Confidence             889 99981                                          000           00014999999999


Q ss_pred             cccHHHHHhhchhh-----CCcccccchhh
Q psy6102         249 GFGVAREVSYVEAE-----NDKPLVLNQME  273 (426)
Q Consensus       249 Gldvl~~I~~l~~~-----~~~P~~~i~il  273 (426)
                      ||+++++|+.++++     .++|..++.|.
T Consensus       133 G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~  162 (167)
T 3s6m_A          133 GQDIVDKIKAVKTGSKGFHQDVPNDDVVIE  162 (167)
T ss_dssp             CHHHHHHHTTSCBBC---CBTCBSSCCEEE
T ss_pred             CHHHHHHHHcCCcCCCcccCCCcCCCeEEE
Confidence            99999999999985     36888776654

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=99.97  E-value=4.8e-33  Score=273.48  Aligned_cols=152  Identities=21%  Similarity=0.188  Sum_probs=126.9

Q ss_pred             cccCCCceEEEEEEECC---eeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCcc
Q psy6102           5 ICKEGNYIVFLDVSIGE---EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDI   81 (426)
Q Consensus         5 ~~~~~~~~~~~~~~~~~---~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~   81 (426)
                      .+..++..|.|+|++..   ++.|+|+|+||++.||+||+||++||+          .+||+|+.|||| ++|||||||+
T Consensus       165 P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~----------~GfYdGt~FHRV-~gFmIQgGDp  233 (369)
T 3rfy_A          165 PLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVE----------RHFYDGMEIQRS-DGFVVQTGDP  233 (369)
T ss_dssp             CEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHH----------TTTTTTEECEEE-EEEEECCCCC
T ss_pred             ccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCCeeeee-CCeeEecCCC
Confidence            34578899999998764   468999999999999999999999995          588999999999 9999999999


Q ss_pred             ccCCCCC---------------------CccccCCCcCCccc-----cccCCCCCCCCCCcchhhhhhhhhhcceeeeee
Q psy6102          82 TNFNGTG---------------------GESIYGPCFEDENF-----KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVC  135 (426)
Q Consensus        82 ~~~~~~~---------------------~~~~~~~~~~~e~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~  135 (426)
                      + ++|+|                     +.++|+.+|++|++     .++|+.     +|+              |||||
T Consensus       234 ~-g~G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~-----~G~--------------LsMAn  293 (369)
T 3rfy_A          234 E-GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNA-----FGT--------------MAMAR  293 (369)
T ss_dssp             C-CCCSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCC-----CCC--------------CCCSS
T ss_pred             C-CCCCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCC-----Cce--------------EEEee
Confidence            7 56666                     56788989999865     677888     899              99999


Q ss_pred             ccccCCCCCCCCCCCccccceEEEEeeccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhh
Q psy6102         136 LFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKK  215 (426)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
                      .   +++     |+  +++||||||++..+-...+++ |||+                                      
T Consensus       294 s---~~g-----Pn--SngSQFFItl~d~~L~~~~~~-~LDg--------------------------------------  324 (369)
T 3rfy_A          294 E---EFE-----ND--SGSSQVFWLLKESELTPSNSN-ILDG--------------------------------------  324 (369)
T ss_dssp             C---CCC-----CC--CSSCCCCCCCEEEEECSCCCS-SSCS--------------------------------------
T ss_pred             c---CCC-----CC--CccceEEEEecccccCCCCCc-ccCC--------------------------------------
Confidence            6   421     88  999999999951000112577 8999                                      


Q ss_pred             hccCCCCccchhHHHHHhhhcccccceechhhccccHHHHHhhc
Q psy6102         216 LETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGVAREVSYV  259 (426)
Q Consensus       216 ~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldvl~~I~~l  259 (426)
                                             +|++||+|++||+++++|+.-
T Consensus       325 -----------------------kytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          325 -----------------------RYAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             -----------------------CEEEEEEEEESTTGGGGCCTT
T ss_pred             -----------------------CeeEEEEEecCHHHHHHHhCC
Confidence                                   999999999999999999873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.86  E-value=1.5e-21  Score=170.97  Aligned_cols=155  Identities=20%  Similarity=0.313  Sum_probs=129.9

Q ss_pred             chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc--chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH
Q psy6102         270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN  347 (426)
Q Consensus       270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~--~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~  347 (426)
                      ....+.+..++.+|+.+++.|+|++|+..|++||++++.....  ........++|.+..+|+++|.|++++|+|++|+.
T Consensus         5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~   84 (162)
T 3rkv_A            5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE   84 (162)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3455688999999999999999999999999999986554321  11222234468889999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         348 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       348 ~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~-~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      +|+++|.++|+++++|+++|.+|..+|++++|+.+|++|++++|+++ .+...+..+...+++..++++..|++||++
T Consensus        85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  162 (162)
T 3rkv_A           85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQP  162 (162)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC--------
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999 889999999999999999999999999974

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.85  E-value=1.3e-20  Score=159.43  Aligned_cols=116  Identities=26%  Similarity=0.434  Sum_probs=112.5

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ++.++.++++|+.+++.|+|++|+..|++||++                +|.++.+|.++|.|+.++|++++|+.+|+++
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----------------DPENAILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            457899999999999999999999999999999                9999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      |+++|+++++|+++|.++..+|++++|+++|++|++++|+|..++..++.|+
T Consensus        74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999998774

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=4.2e-19  Score=156.21  Aligned_cols=138  Identities=7%  Similarity=0.083  Sum_probs=118.9

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ....+..++..|+.+++.|+|++|+..|++||++.+.+...    +.....|.+..+|.|+|.|+.++|+|++|+.+|++
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k   82 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   82 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----hhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34578899999999999999999999999999996553211    11122344566999999999999999999999999


Q ss_pred             HHHh-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         352 ILLM-------EPNNVKAL----FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       352 AL~l-------dp~~~kal----~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      ||++       +|+++++|    |++|.++..+|++++|+.+|++|++++|++..+...+..+...+....++
T Consensus        83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999       99999999    99999999999999999999999999999999988888888776655443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.77  E-value=9.9e-18  Score=165.24  Aligned_cols=152  Identities=31%  Similarity=0.538  Sum_probs=133.9

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ....+..++.+|+.+++.|+|++|+.+|++|+++.+..... ..+...++.+....+|.++|.|++++|+|++|+.+|++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-SNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-CSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34578899999999999999999999999999994332211 11222223344489999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      ||+++|+++++|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++.+++++..|++||..
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999863

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.76  E-value=7.1e-18  Score=173.30  Aligned_cols=152  Identities=30%  Similarity=0.521  Sum_probs=129.2

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ....+..++.+|+.+++.++|++|+..|.+|+++.+...... .+...++.+....+|+++|.||+++++|++|+.+|++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            345788999999999999999999999999999854432111 1222233455589999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      ||+++|+++++|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++++++++..|++||..
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999964

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.75  E-value=1.4e-17  Score=150.42  Aligned_cols=156  Identities=26%  Similarity=0.412  Sum_probs=120.2

Q ss_pred             chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      ......+..+..+|+.++..|+|++|+..|.+|+++.+....................++.++|.|++++|++++|+.+|
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34556788899999999999999999999999999833211000000000000011389999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCC
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG  425 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~~  425 (426)
                      +++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..++.+...+++..++++..|+++|+.+
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.4e-17  Score=137.44  Aligned_cols=117  Identities=21%  Similarity=0.303  Sum_probs=112.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++.+|..+++.|+|++|+..|++++++                +|.++.+|.++|.|++++|++++|+.+++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAIE   66 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL------PNDQQILKEIAFVRKQM  407 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~------P~n~~a~~~l~~i~~~l  407 (426)
                      ++|+++.+|+++|.++..+|++++|+.+|+++++++      |.+..++..+..+...+
T Consensus        67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999      99999999999887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.74  E-value=1.6e-17  Score=140.31  Aligned_cols=114  Identities=21%  Similarity=0.332  Sum_probs=103.8

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      .+.+..++++|+.+++.|+|++|+.+|++||++                +|.++.+|.++|.||+++|+|++|+.+|+++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------DPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            457889999999999999999999999999999                9999999999999999999999999999999


Q ss_pred             HHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         353 LLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       353 L~ldp~~-------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      |+++|++       .++|+++|.++..+|++++|+++|++++.++|+ ++....+..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            9999876       468999999999999999999999999999985 5555444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.72  E-value=1.5e-16  Score=139.12  Aligned_cols=106  Identities=14%  Similarity=0.314  Sum_probs=103.0

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      +..+..++.+|..+++.|+|++|+..|++++.+                +|.++.+|.++|.|+..+|+|++|+.+|+++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            457889999999999999999999999999999                9999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      ++++|+++.+|+++|.||..+|++++|+.+|++|+++.|+.+
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=3.8e-17  Score=141.90  Aligned_cols=118  Identities=8%  Similarity=0.003  Sum_probs=110.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++.+|..|++.|+|++|+.+|++||++                +|.++.+|.++|.++.++|++++|+.+|+++++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV----------------QERDPKAHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            5566789999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQD-YEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~-l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      ++|+++.+|+++|.+|..+|++++|.+. +++|++++|+++.++..++.+....|
T Consensus        94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999887776 59999999999999999888876654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.71  E-value=1e-16  Score=140.17  Aligned_cols=124  Identities=17%  Similarity=0.198  Sum_probs=112.9

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ....+..++.+|..++..|+|++|+.+|.+++++                +|.+..+|+++|.+++++|++++|+.+|++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   70 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI----------------APANPIYLSNRAAAYSASGQHEKAAEDAEL   70 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCcCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3457889999999999999999999999999999                999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHhhHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--ILKEIAFVRKQMRHHL  411 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~--a~~~l~~i~~~l~~~~  411 (426)
                      +++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..  ....+..+...+++..
T Consensus        71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987  4555555555555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.70  E-value=5.9e-17  Score=140.69  Aligned_cols=124  Identities=13%  Similarity=0.043  Sum_probs=112.0

Q ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q psy6102         281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  360 (426)
Q Consensus       281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~  360 (426)
                      .+|..+..++++++|+..|++++..                +|.++..++++|.+|+++|+|++|+++++++|+++|+++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~----------------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS----------------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS----------------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc----------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            3688999999999999999999988                788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy6102         361 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  420 (426)
Q Consensus       361 kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k  420 (426)
                      .+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++.+..+++
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~  125 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER  125 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887665544444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.68  E-value=4.2e-16  Score=133.40  Aligned_cols=122  Identities=14%  Similarity=0.197  Sum_probs=113.2

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..++.+|..++..|+|++|+..|.+++..                +|.+..+|+++|.++.++|++++|+.+|++++
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML----------------DHYDARYFLGLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            36678899999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      .++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...+....
T Consensus        80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT  137 (142)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877777777766665544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=4e-16  Score=135.32  Aligned_cols=119  Identities=13%  Similarity=0.169  Sum_probs=109.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..++.+|..++..|+|++|+..|.+++.+                +|.+..+|+++|.++..+|++++|+.+|++++
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            36778899999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      .++|+++.+++++|.+|..+|++++|+.+|+++++++|+++........+...+.
T Consensus        83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988766555555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.67  E-value=6.4e-17  Score=159.65  Aligned_cols=156  Identities=27%  Similarity=0.409  Sum_probs=96.6

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch-hhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN  347 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~-~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~  347 (426)
                      .......+..++.+|+.+++.++|++|+.+|.+|+.+.+....... .............+|+++|.|++++++|++|+.
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3445567889999999999999999999999999998322110000 000000000111499999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         348 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       348 ~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      +|+++|+++|++.++|+++|.+|..+|++++|+.+|++|++++|++..++..+..+........++++..|+++|..
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999888888888889999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.67  E-value=1.9e-15  Score=137.96  Aligned_cols=121  Identities=16%  Similarity=0.137  Sum_probs=113.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHH----------------HHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN----------------MAAVQLK  338 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~n----------------lA~~~~~  338 (426)
                      .+..+...|..++..|+|++|+..|++++++                +|.++.+|+.                +|.++.+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~   66 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----------------NIDRTEMYYWTNVDKNSEISSKLATELALAYKK   66 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999                8889999998                9999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       339 lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      +|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.++...++..
T Consensus        67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999987665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.66  E-value=1.1e-15  Score=165.49  Aligned_cols=125  Identities=19%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+.++|+.+.++|++++|+.+|++||++                +|.+..+|+++|.+|.++|++++|+++|++||
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al   70 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEV----------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI   70 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666666666666666666666666665                44444444444444444444444444444444


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      +++|+++.+|+++|.+|..+|++++|+++|++|++++|++..++.+++.++..+++.++|.
T Consensus        71 ~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi  131 (723)
T 4gyw_A           71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI  131 (723)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4444444444444444444444444444444444444444444444444444444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.66  E-value=6.9e-16  Score=129.52  Aligned_cols=123  Identities=20%  Similarity=0.341  Sum_probs=115.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++.+|..++..|+|++|+..|.+++++                +|.+..+++++|.+++.+|++++|+.+++++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~   71 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALE   71 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh----------------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            5778999999999999999999999999999                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-----DQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~-----n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|+     +..+...+..+........++
T Consensus        72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e~  135 (137)
T 3q49_B           72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE  135 (137)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred             hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998     788888888887766555543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=1.5e-15  Score=139.72  Aligned_cols=126  Identities=14%  Similarity=0.124  Sum_probs=107.7

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc-----------cC
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-----------KA  341 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l-----------g~  341 (426)
                      +..+..+..+|..+.+.|++++|+..|++++++                +|.+..++.++|.++.++           |+
T Consensus        36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~   99 (217)
T 2pl2_A           36 PQDPEALYWLARTQLKLGLVNPALENGKTLVAR----------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGY   99 (217)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence            345677788888888888888888888888888                888888888888888888           88


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         342 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       342 ~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++|+..++++++++|+++.+++.+|.++..+|++++|+..|++|++++ +++.++..++.++..+++.+++..
T Consensus       100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~  172 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA  172 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888888888888888888888888888888888888888888 888888888888888888888764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.64  E-value=1e-14  Score=119.77  Aligned_cols=124  Identities=24%  Similarity=0.359  Sum_probs=117.4

Q ss_pred             hhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       271 ~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      .....+..+..+|..++..++|++|+..|.+++..                .|.+..++.++|.++..+|++++|+.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----------------NPANAVYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            34457888999999999999999999999999998                88899999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         351 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       351 ~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      +++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999887753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=1.6e-14  Score=124.38  Aligned_cols=128  Identities=17%  Similarity=0.291  Sum_probs=117.5

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ..+.+..+..+|..++..|+|++|+..|.++++.                .|.+..++.++|.++..+|++++|+.++++
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   72 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------NPSNAIYYGNRSLAYLRTECYGYALGDATR   72 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3457889999999999999999999999999999                899999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHHhhHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV--RKQMRHHLNLEK  415 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i--~~~l~~~~~a~k  415 (426)
                      ++.++|.++.+++.+|.++..+|++++|+..|+++++++|.+..++..+..+  ....++.+++..
T Consensus        73 a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~  138 (166)
T 1a17_A           73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  138 (166)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988666666  555666666643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=3.6e-15  Score=123.43  Aligned_cols=120  Identities=23%  Similarity=0.348  Sum_probs=114.6

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ...+..++.+|..++..|+|++|+..|.++++.                .|.+..++.++|.++..+|++++|+.+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a   76 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----------------NPKDAKLYSNRAACYTKLLEFQLALKDCEEC   76 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            447889999999999999999999999999998                8999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      ++++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.++...+
T Consensus        77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=1.2e-14  Score=117.34  Aligned_cols=115  Identities=21%  Similarity=0.289  Sum_probs=110.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|+|++|+..|.+++..                .|.+..++.++|.++..+|++++|+..+++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   66 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL----------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD   66 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            5678999999999999999999999999998                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus        67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999988887753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.62  E-value=1.6e-14  Score=127.70  Aligned_cols=146  Identities=13%  Similarity=0.173  Sum_probs=117.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      .+..|..+|+.++++|+|++|+..|++|+++.|.....                  ..........|....++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            46678899999999999999999999999874332221                  002334455677777777777777


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ...++++.|+..+.+++.++|.+..+++.+|.++..+|++++|++.|+++++++|.+..++..++.++..+++.++|.. 
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~-  162 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK-  162 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-
Confidence            7777888888888888888888999999999999999999999999999999999999999999999999999988876 


Q ss_pred             HHHhh
Q psy6102         417 TYARM  421 (426)
Q Consensus       417 ~~~k~  421 (426)
                      .|++.
T Consensus       163 ~~~~a  167 (184)
T 3vtx_A          163 YFKKA  167 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            34433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=5.8e-15  Score=159.88  Aligned_cols=125  Identities=15%  Similarity=0.219  Sum_probs=120.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+.++|..+.+.|++++|+.+|++||++                +|.+..+|+++|.++.++|++++|+++|++||+
T Consensus        42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~  105 (723)
T 4gyw_A           42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI----------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ  105 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++|+++.+|+++|.+|..+|++++|+++|++|++++|++..++.+++.++..+++.+++..
T Consensus       106 l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A          106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998877654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=1.8e-14  Score=132.06  Aligned_cols=129  Identities=17%  Similarity=0.188  Sum_probs=119.7

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc-chHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS-YYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p-~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      +..++.+|..++..|+|++|+..|++++++                .| .+..+++++|.|+..+|++++|+.+++++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~   70 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKL----------------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK   70 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----------------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence            478999999999999999999999999999                77 7889999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-------QILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~-------~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      ++|++..+++.+|.++..+|++++|+..|+++++++|++.       .++..++.++..+++++++.. .|.+.
T Consensus        71 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~a  143 (228)
T 4i17_A           71 KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHA  143 (228)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999999999       668889999999999988876 34433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=1.4e-14  Score=133.07  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy6102         297 RKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF  376 (426)
Q Consensus       297 ~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~  376 (426)
                      ..+.+|+..         .....+++|.+..++.++|.++..+|++++|+..|+++++++ +++.+++.+|.++..+|++
T Consensus        98 g~~~~A~~~---------~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A           98 GYLEQALSV---------LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             HHHHHHHHH---------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCH
T ss_pred             cCHHHHHHH---------HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCH
Confidence            666677766         577888899999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         377 EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       377 ~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++|+..|+++++++|++..++..++.++..+++.+++..
T Consensus       168 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          168 DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            999999999999999999999999999999999988764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=6.6e-15  Score=147.98  Aligned_cols=116  Identities=12%  Similarity=0.087  Sum_probs=81.8

Q ss_pred             HHHHHhccchhhhhhh-HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNR-MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~-y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      +..|..+|..+...|+ +++|+..|.+||++                +|.+..+|+++|.++..+|++++|+.+|+++|+
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~  194 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILN  194 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4456666666666664 66666666666666                677777777777777777777777777777777


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+
T Consensus       195 ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l  247 (382)
T 2h6f_A          195 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  247 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777777777777777777777663

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=121.52  Aligned_cols=117  Identities=22%  Similarity=0.366  Sum_probs=110.3

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      ...+..++.+|..++..|+|++|+..|.++++.                .|.+   ..++.++|.++..++++++|+.++
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   88 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL----------------DATPQDQAVLHRNRAACHLKLEDYDKAETEA   88 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------------cccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            346788999999999999999999999999998                7776   899999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      ++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+..+..
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988877753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=5.5e-15  Score=123.62  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=92.8

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .++.+|..+++.|++++|+..|.++++.                +|.+..+|+++|.++..+|++++|+..++++++++|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK----------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4678899999999999999999999999                999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      +++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999999999999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=2.6e-14  Score=117.48  Aligned_cols=119  Identities=21%  Similarity=0.320  Sum_probs=111.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|+|++|+.+|.+++..                .|.+..++.++|.++..+|++++|+.++++++.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL----------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            5678999999999999999999999999999                889999999999999999999999999999999


Q ss_pred             hCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         355 MEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       355 ldp~~-------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      +.|.+       ..+++.+|.++..+|++++|+..|++++++.| +..+...+..+...+++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            99887       99999999999999999999999999999999 688888888888776654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=8.9e-14  Score=122.88  Aligned_cols=77  Identities=14%  Similarity=0.213  Sum_probs=73.2

Q ss_pred             hhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         319 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       319 ~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      ..+.|.+..++..+|.++.++|++++|+++|+++++++|.++.+|+++|.+|..+|++++|+++|++|++++|+++.
T Consensus       100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            34499999999999999999999999999999999999999999999999999999999999999999999998753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.57  E-value=3e-14  Score=118.11  Aligned_cols=115  Identities=14%  Similarity=0.107  Sum_probs=105.7

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchH---HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT---AALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~---~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .++.+|..++..|+|++|+..|.++++.                .|.+.   .+++.+|.+++++|++++|+..+++++.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~   67 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL----------------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS   67 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH----------------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4678899999999999999999999998                66666   8999999999999999999999999999


Q ss_pred             hCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         355 MEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       355 ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      ++|++   +.+++.+|.++..+|++++|+..|++++...|++..+...+..+....+
T Consensus        68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            99999   9999999999999999999999999999999999988887777765543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=1e-14  Score=146.53  Aligned_cols=126  Identities=10%  Similarity=0.041  Sum_probs=91.5

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-HHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-YKRAINLCDDI  352 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~-~~~Ai~~~~~A  352 (426)
                      ..+..+..+|..+...|++++|+..|++||++                +|.+..+|+++|.++..+|+ +++|+.+|+++
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a  158 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAI  158 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence            35666777777777777777777777777777                77777777777777777775 77777777777


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      |+++|+++.+|+++|.++..+|++++|+.+|++|++++|++..++..++.++..+++++++..
T Consensus       159 l~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~  221 (382)
T 2h6f_A          159 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ  221 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH
Confidence            777777777777777777777777777777777777777777777777777777776665543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.56  E-value=8.4e-15  Score=128.03  Aligned_cols=102  Identities=12%  Similarity=0.040  Sum_probs=96.6

Q ss_pred             hhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         315 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       315 ~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      ......++|.+..+++++|.+++++|+|++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++|++++|+++
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            34455559999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHH
Q psy6102         395 QILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       395 ~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .++..++.++..+++.++|...
T Consensus       105 ~~~~~lg~~~~~lg~~~eA~~~  126 (151)
T 3gyz_A          105 TPVFHTGQCQLRLKAPLKAKEC  126 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999998763

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.55  E-value=1.6e-13  Score=111.54  Aligned_cols=117  Identities=24%  Similarity=0.424  Sum_probs=111.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|++++|+..|.++++.                .|.+..++.++|.++.+.|++++|+..+++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   71 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4677899999999999999999999999998                888899999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...
T Consensus        72 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999998887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.54  E-value=1.1e-13  Score=116.48  Aligned_cols=97  Identities=14%  Similarity=0.131  Sum_probs=93.8

Q ss_pred             hcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH
Q psy6102         320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  399 (426)
Q Consensus       320 ~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~  399 (426)
                      .++|..+..+.++|.++++.|+|++|++.|+++|+++|.++.+|+++|.++..+|++++|+.+|++|++++|++..++..
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHHHH
Q psy6102         400 IAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       400 l~~i~~~l~~~~~a~k~  416 (426)
                      ++.++..+++++++...
T Consensus        87 lg~~~~~~~~~~~A~~~  103 (126)
T 4gco_A           87 KAACLVAMREWSKAQRA  103 (126)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHH
Confidence            99999999999998763

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.54  E-value=5e-14  Score=123.55  Aligned_cols=107  Identities=21%  Similarity=0.369  Sum_probs=97.7

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCH----------HHHHHHHHHHHH
Q psy6102         285 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY----------KRAINLCDDILL  354 (426)
Q Consensus       285 ~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~----------~~Ai~~~~~AL~  354 (426)
                      ..-+.+.|++|+..|.+|+++                +|.++.+|+++|.++.+++++          ++|+..|++||+
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l----------------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~   74 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKS----------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL   74 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH
Confidence            445678899999999999999                999999999999999999875          599999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMN-----------NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg-----------~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++|++.++|+++|.+|..+|           ++++|+++|++|++++|++...+..+..+.+..
T Consensus        75 ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A           75 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            99999999999999999885           899999999999999999998888877665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.54  E-value=1.4e-13  Score=126.02  Aligned_cols=118  Identities=15%  Similarity=0.179  Sum_probs=113.1

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..++.+|..++..|+|++|+..|.+|++.                +|.+..++.++|.++..+|++++|+..++++++++
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKK----------------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHh----------------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            56777999999999999999999999998                99999999999999999999999999999999999


Q ss_pred             CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhH
Q psy6102         357 PNNV-------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       357 p~~~-------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~~l~~~  410 (426)
                      |++.       .+|+.+|.++..+|++++|++.|++|++++|+  +..++..++.++...++.
T Consensus       107 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          107 PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999       77999999999999999999999999999999  999999999999888776

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.52  E-value=3.8e-14  Score=146.39  Aligned_cols=126  Identities=17%  Similarity=0.304  Sum_probs=116.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +.+..++.+|+.+++.|+|++|+.+|++|+++                +|.+..+|.++|.++.++|++++|++++++|+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45677899999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHHhhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV--RKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i--~~~l~~~~~a~k  415 (426)
                      +++|+++.+++++|.+|..+|++++|++.|++|++++|++..++..++.+  +...+++++|..
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~  131 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  131 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999988  555566665544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.51  E-value=6.6e-13  Score=108.78  Aligned_cols=124  Identities=20%  Similarity=0.321  Sum_probs=117.8

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+..+|..++..|++++|+..|.++++.                .|.+..++..+|.++...|++++|+..+++++.+.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc----------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            45788899999999999999999999998                88889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      |.+..+++.+|.++...|++++|+..+++++.+.|.+..++..++.++...++.+++...
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  125 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY  125 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.50  E-value=3.3e-13  Score=121.74  Aligned_cols=124  Identities=16%  Similarity=0.175  Sum_probs=112.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..++.+|..++..|+|++|+..|.+++                  ++ ++.+++++|.++.++|++++|+.++++++
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~------------------~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al   64 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ------------------DP-HSRICFNIGCMYTILKNMTEAEKAFTRSI   64 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS------------------SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc------------------CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            355678899999999999999999999884                  23 46799999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHHHhhHHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ----------------QILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~----------------~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .++|.++.+++++|.++..+|++++|+.+|++++++.|.+.                .++..++.++..+++.+++...
T Consensus        65 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  143 (213)
T 1hh8_A           65 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ  143 (213)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence            99999999999999999999999999999999999888877                9999999999999999888753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.48  E-value=8.6e-14  Score=133.32  Aligned_cols=103  Identities=22%  Similarity=0.368  Sum_probs=100.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++.+|+.++..|+|++|+..|++|++.                +|.+..+|.++|.++.++|++++|+.+++++++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~   66 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALE   66 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      ++|++..+++++|.+|..+|++++|+..|+++++++|++
T Consensus        67 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999976

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.48  E-value=1e-13  Score=114.36  Aligned_cols=105  Identities=14%  Similarity=0.093  Sum_probs=90.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  367 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg  367 (426)
                      ..|++++|+..|++|+++..             -+|.+..++.++|.++.++|++++|+..++++++++|+++.+++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~-------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGL-------------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCC-------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            36889999999999998610             02788999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         368 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       368 ~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      .++..+|++++|+..|++++.+.|+++.+......+..
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999987765555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.48  E-value=1.4e-12  Score=113.20  Aligned_cols=124  Identities=19%  Similarity=0.297  Sum_probs=119.4

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..++..|++++|+..|.++++.                .|.+..++.++|.++...|++++|+..+++++.+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  105 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLAD----------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA  105 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            567889999999999999999999999998                8899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|.+..+++.+|.++..+|++++|+..|++++++.|.+..++..++.++...++.+++..
T Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A          106 NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988865

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.48  E-value=4.8e-13  Score=137.71  Aligned_cols=124  Identities=15%  Similarity=0.130  Sum_probs=118.8

Q ss_pred             HHHHHhccchhhhh---------hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc-------
Q psy6102         276 IRTIKNSGNEYFKL---------NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-------  339 (426)
Q Consensus       276 a~~~~~~G~~~f~~---------g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l-------  339 (426)
                      ...+..+|..++..         |+|++|+..|.+|+++                +|.+..+|+++|.++..+       
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~~~  233 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----------------DVLDGRSWYILGNAYLSLYFNTGQN  233 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHhhccc
Confidence            36788899999999         9999999999999999                999999999999999999       


Q ss_pred             -cCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         340 -KAYKRAINLCDDILLMEP---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       340 -g~~~~Ai~~~~~AL~ldp---~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                       |++++|+.+|+++++++|   .++.+|+++|.+|..+|++++|++.|++|++++|++..++..++.++..+++.+++..
T Consensus       234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             999999999999999999   9999999999999999999999999999999999999999999999999999888763

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.48  E-value=4.1e-13  Score=122.41  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      ....+|..+++.|+|++|+..|++++++                +|.++.++.++|.++..+|++++|+.+|+++++++|
T Consensus        56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P  119 (208)
T 3urz_A           56 LATELALAYKKNRNYDKAYLFYKELLQK----------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA  119 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            3455999999999999999999999999                999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHc-----------------------------------CChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         358 NNVKALFRRGRAQVSM-----------------------------------NNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       358 ~~~kal~~lg~a~~~l-----------------------------------g~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      +++.+|+++|.+|+.+                                   |++++|+.+|++|++++|++. +...+..
T Consensus       120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~  198 (208)
T 3urz_A          120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDK  198 (208)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence            9999998888877543                                   457788888888888888643 3333444


Q ss_pred             H
Q psy6102         403 V  403 (426)
Q Consensus       403 i  403 (426)
                      +
T Consensus       199 i  199 (208)
T 3urz_A          199 I  199 (208)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.2e-12  Score=120.35  Aligned_cols=141  Identities=12%  Similarity=0.172  Sum_probs=124.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc----------chhhhhhhcCcchHHHHHHHHHHHHHccCHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS----------QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR  344 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~----------~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~  344 (426)
                      .+..+..+|..+...|++++|+..|.+++++.+.....          ..........|.+..++.++|.++...|++++
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence            47789999999999999999999999999853211000          11233444689999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         345 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       345 Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      |+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++..
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988865

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=2.2e-13  Score=108.80  Aligned_cols=102  Identities=9%  Similarity=0.038  Sum_probs=97.5

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..++..|+|++|+..|.++++.                .|.+..++.++|.++..+|++++|+.++++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL----------------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345778999999999999999999999999                8999999999999999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCc
Q psy6102         356 EPN--NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       356 dp~--~~kal~~lg~a~~~l-g~~~~Al~~l~kAl~l~P~n  393 (426)
                      +|.  +..+++.+|.++..+ |++++|++++++++...|.+
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            999  999999999999999 99999999999999999976

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.46  E-value=2.5e-13  Score=117.50  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=92.2

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      +|.+..+++++|.++++.|++++|+..+++++.++|.++.+|+.+|.++..+|++++|+.+|++|+.++|+++.++..++
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHH
Q psy6102         402 FVRKQMRHHLNLEK  415 (426)
Q Consensus       402 ~i~~~l~~~~~a~k  415 (426)
                      .++..+++.+++..
T Consensus        97 ~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           97 ECLLQXGELAEAES  110 (148)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999999998875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.46  E-value=6.5e-13  Score=116.82  Aligned_cols=120  Identities=10%  Similarity=0.034  Sum_probs=94.0

Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      ...+..++..|++++|+..|.++++.                +|.+..+|..+|.++..+|++++|+..+++++.++|.+
T Consensus        14 ~~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   77 (177)
T 2e2e_A           14 RDPLHQFASQQNPEAQLQALQDKIRA----------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN   77 (177)
T ss_dssp             STTTCCCC-----CCCCHHHHHHHHH----------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred             hhhhhhhhhccCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            34556677788888888888888887                78888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         360 VKALFRRGRA-QVSMNNF--EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       360 ~kal~~lg~a-~~~lg~~--~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.+++.+|.+ +...|++  ++|+..|+++++++|++..++..++.++...++++++..
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A           78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE  136 (177)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence            8888888888 7788887  888888888888888888888888888888888877765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.45  E-value=2.7e-12  Score=119.49  Aligned_cols=125  Identities=15%  Similarity=0.097  Sum_probs=114.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|++++|+..|.++++.                .|.+..++.++|.++..+|++++|+..+++++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  104 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL  104 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999                89999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++|.++.+++.+|.++..+|++++|+..|+++++++|++......+..+ ...++.+++..
T Consensus       105 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~  165 (275)
T 1xnf_A          105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE  165 (275)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred             hcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH
Confidence            99999999999999999999999999999999999999998776666544 44566666654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.45  E-value=7.7e-13  Score=123.97  Aligned_cols=130  Identities=14%  Similarity=0.167  Sum_probs=117.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch---HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY---TAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~---~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      .+..++.+|..+++.|+|++|+..|.++++.                .|.+   ..+++.+|.|++++|+|++|+..+++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~   77 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----------------GRTHEWAADAQFYLARAYYQNKEYLLAASEYER   77 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----------------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            5678999999999999999999999999998                6777   99999999999999999999999999


Q ss_pred             HHHhCCCC---HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHH
Q psy6102         352 ILLMEPNN---VKALFRRGRAQVS--------MNNFEQGLQDYEQALDLLPNDQQIL-----------------KEIAFV  403 (426)
Q Consensus       352 AL~ldp~~---~kal~~lg~a~~~--------lg~~~~Al~~l~kAl~l~P~n~~a~-----------------~~l~~i  403 (426)
                      ++++.|++   ..+++.+|.++..        +|++++|+..|+++++++|++..+.                 ..++.+
T Consensus        78 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~  157 (261)
T 3qky_A           78 FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARL  157 (261)
T ss_dssp             HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998854   7899999999999        9999999999999999999987666                 777999


Q ss_pred             HHHHhhHHHHHHHHHHhh
Q psy6102         404 RKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       404 ~~~l~~~~~a~k~~~~k~  421 (426)
                      +...++++++.. .|++.
T Consensus       158 ~~~~g~~~~A~~-~~~~~  174 (261)
T 3qky_A          158 YERRELYEAAAV-TYEAV  174 (261)
T ss_dssp             HHHTTCHHHHHH-HHHHH
T ss_pred             HHHccCHHHHHH-HHHHH
Confidence            999999988875 34443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.44  E-value=1.4e-12  Score=136.53  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=120.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|+|++|+..|++|+++                +|.+..++.++|.++..+|++++|++.++++++
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   85 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLAL----------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD   85 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4578999999999999999999999999998                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---hhHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM---RHHLNLEKM  416 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l---~~~~~a~k~  416 (426)
                      ++|++..+++++|.++..+|++++|++.|+++++++|++..++..++.++..+   ++.+++...
T Consensus        86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~  150 (568)
T 2vsy_A           86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ  150 (568)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999   888877653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.44  E-value=1e-12  Score=115.51  Aligned_cols=115  Identities=15%  Similarity=0.199  Sum_probs=105.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHH-HHHccCH--HHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV-QLKFKAY--KRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~-~~~lg~~--~~Ai~~~~~  351 (426)
                      .+..+..+|..++..|+|++|+.+|.+++++                .|.+..++.++|.+ +...|++  ++|+..+++
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~  106 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQL----------------RGENAELYAALATVLYYQASQHMTAQTRAMIDK  106 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            4567899999999999999999999999999                88899999999999 8899999  999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      +++++|++..+++.+|.++..+|++++|+..|+++++++|++......+..+..
T Consensus       107 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998766555544443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.44  E-value=4.4e-12  Score=115.74  Aligned_cols=124  Identities=14%  Similarity=0.180  Sum_probs=98.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..++..|++++|+..|.++++.                .|.+..++..+|.++.++|++++|+..+++++++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRA----------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            455666667777777777777777777666                7777888888888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.++...++.+++..
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  214 (243)
T 2q7f_A          155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE  214 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            888888888888888888888888888888888888888888888888888887777754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=1.8e-12  Score=112.58  Aligned_cols=126  Identities=13%  Similarity=0.115  Sum_probs=120.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|++++|+..|.++++.                .|.+..++..+|.++...|++++|+..++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~   70 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----------------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA   70 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5677889999999999999999999999987                888999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ++|.+..+++.+|.++...|++++|+..|++++.++|.+..++..++.++...++.+++...
T Consensus        71 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  132 (186)
T 3as5_A           71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS  132 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=2.8e-12  Score=120.07  Aligned_cols=133  Identities=14%  Similarity=0.133  Sum_probs=115.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH--------ccCHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--------FKAYKRAI  346 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~--------lg~~~~Ai  346 (426)
                      .+..++.+|..+++.|+|++|+..|+++++..+.             ++....+++++|.+++.        +|++++|+
T Consensus        51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~  117 (261)
T 3qky_A           51 AADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI  117 (261)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-------------CchhHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            4678999999999999999999999999998322             34668899999999999        99999999


Q ss_pred             HHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH
Q psy6102         347 NLCDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQILKEIAFVRKQ  406 (426)
Q Consensus       347 ~~~~~AL~ldp~~~kal-----------------~~lg~a~~~lg~~~~Al~~l~kAl~l~P~---n~~a~~~l~~i~~~  406 (426)
                      ..++++++++|++..+.                 +.+|.+|..+|++++|+..|+++++..|+   ...++..++.++..
T Consensus       118 ~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  197 (261)
T 3qky_A          118 EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA  197 (261)
T ss_dssp             HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            99999999999986665                 99999999999999999999999999998   56799999999987


Q ss_pred             H----------hhHHHHHHHHHHhh
Q psy6102         407 M----------RHHLNLEKMTYARM  421 (426)
Q Consensus       407 l----------~~~~~a~k~~~~k~  421 (426)
                      +          ++.+++.. .|++.
T Consensus       198 ~g~~~~~~~~~~~~~~A~~-~~~~~  221 (261)
T 3qky_A          198 YAEQSVRARQPERYRRAVE-LYERL  221 (261)
T ss_dssp             HHHTSCGGGHHHHHHHHHH-HHHHH
T ss_pred             hcccchhhcccchHHHHHH-HHHHH
Confidence            7          56566543 44443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=4.2e-12  Score=122.07  Aligned_cols=120  Identities=26%  Similarity=0.387  Sum_probs=109.7

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchH----HHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT----AALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~----~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      .......|..++..|++++|+..|.++++.                .|.+.    .++..+|.++.++|++++|+..+++
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  297 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKT----------------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE  297 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            344567799999999999999999999998                56655    4577899999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      +++++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..+..+...+++.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999988877654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.43  E-value=3.6e-13  Score=144.94  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=119.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..+++.|+|++|+..|+++++.                +|.+..+|+++|.+++++|++++|+.+|++|++
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  495 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAER----------------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD  495 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      ++|+++.+|+++|.++..+|++++ +++|++|++++|++..++.+++.++..++++++|.. .|++.
T Consensus       496 l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~-~~~~a  560 (681)
T 2pzi_A          496 TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR-TLDEV  560 (681)
T ss_dssp             HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHTS
T ss_pred             hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH-HHHhh
Confidence            999999999999999999999999 999999999999999999999999999999998875 44443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.43  E-value=2.1e-12  Score=126.16  Aligned_cols=124  Identities=11%  Similarity=0.116  Sum_probs=109.0

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +..+..+|..+...|++++|+..|.++++.                .|.  ++.++.++|.++.++|++++|+..+++++
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  240 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----------------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL  240 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHH----------------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----------------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445567799999999999999999999999                788  89999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++..
T Consensus       241 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          241 TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988865

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=3.6e-12  Score=116.38  Aligned_cols=124  Identities=18%  Similarity=0.138  Sum_probs=84.8

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..++..|++++|+..|.++++.                .|.+..++..+|.++..+|++++|+..+++++++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  120 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALEL----------------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA  120 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            445666666666677777777777777666                6666666777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|.+..+++.+|.++..+|++++|+..|++++++.|++..++..++.++...++.+++..
T Consensus       121 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            776677777777777777777777777777777777666666666666666666665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.42  E-value=1.2e-12  Score=134.87  Aligned_cols=124  Identities=11%  Similarity=0.002  Sum_probs=119.8

Q ss_pred             HHHHHHhccchhhhhhhH-HHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRM-HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y-~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .+..++.+|..++..++| ++|+.+|++|+++                +|.+..+|+++|.+|.++|++++|+.+|++++
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  164 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL  164 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            578899999999999999 9999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--------hhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSM---------NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM--------RHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~l---------g~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l--------~~~~~a~k  415 (426)
                      +++|+ ..+++++|.++..+         |++++|++.|++|++++|++..++..++.++..+        ++++++..
T Consensus       165 ~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          165 THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            99999 79999999999999         9999999999999999999999999999999999        88888865

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.42  E-value=1.3e-12  Score=127.08  Aligned_cols=125  Identities=10%  Similarity=0.118  Sum_probs=115.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|++++|+..|++++++                .|.+..++.++|.++.++|++++|+..++++++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  279 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----------------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE  279 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567888999999999999999999999998                888999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-----------QQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n-----------~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++|+++.+++.+|.++..+|++++|+..|++++++.|++           ..++..++.++..+++.+++.+
T Consensus       280 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          280 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            999999999999999999999999999999999999988           8999999999999998887764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=2e-12  Score=118.73  Aligned_cols=114  Identities=20%  Similarity=0.312  Sum_probs=108.7

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|+|++|+..|+++++.                .|.+..++.++|.++.++|++++|+..+++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999                89999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCcHHHHHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL------PNDQQILKEIAFV  403 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~------P~n~~a~~~l~~i  403 (426)
                      +++|+++.+++.+|.++..+|++++|+..|+++++++      |.+..++..+..+
T Consensus       201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            9999999999999999999999999999999999999      9999988887765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.42  E-value=6.3e-12  Score=112.93  Aligned_cols=124  Identities=14%  Similarity=0.070  Sum_probs=98.7

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-KAYKRAINLCDDILL  354 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l-g~~~~Ai~~~~~AL~  354 (426)
                      +..+..+|..+...|++++|+..|.++++.                .|.+..++.++|.++..+ |++++|+..++++++
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI----------------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            345566666666666666666666666666                777888888888888888 888888888888888


Q ss_pred             --hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 --MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 --ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                        .+|.+..+++.+|.++..+|++++|+..|++++++.|.+..++..++.++...++.+++..
T Consensus       106 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A          106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence              6667788888888888888888888888888888888888888888888888888877765

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.41  E-value=2.2e-12  Score=126.09  Aligned_cols=125  Identities=11%  Similarity=0.148  Sum_probs=117.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..+...|++++|+..|.++++.                .|.+..+|.++|.++.++|++++|+..++++++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  275 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV----------------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALE  275 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3567889999999999999999999999999                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------------DQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~------------n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|+            +..++..++.+...+++.+.+.+
T Consensus       276 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  348 (365)
T 4eqf_A          276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA  348 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence            99999999999999999999999999999999999988            36789999999999999887765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=6.7e-12  Score=112.76  Aligned_cols=125  Identities=14%  Similarity=-0.003  Sum_probs=116.8

Q ss_pred             HHHHHHhccchhhhh-hhHHHHHHHHHHHHH--HHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKL-NRMHDAQRKYKKAVR--YIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~-g~y~~Ai~~y~kAl~--~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      ....+..+|..++.. |++++|+..|.++++  .                .|....++.++|.++..+|++++|+..+++
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  138 (225)
T 2vq2_A           75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPT----------------YPTPYIANLNKGICSAKQGQFGLAEAYLKR  138 (225)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTT----------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcC----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456788999999999 999999999999998  3                788899999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP-NDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P-~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++++|.+..+++.+|.++..+|++++|+..|++++++.| .+..++..+..++...++.+++..
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            9999999999999999999999999999999999999999 999999999988888888876653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.40  E-value=1.6e-12  Score=110.91  Aligned_cols=96  Identities=15%  Similarity=0.154  Sum_probs=92.8

Q ss_pred             hcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH
Q psy6102         320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  399 (426)
Q Consensus       320 ~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~  399 (426)
                      .++|.+...++.+|.++++.|++++|+..+++++.++|+++.+|+.+|.++..+|++++|+.+|++|+.++|+++.++..
T Consensus        12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   91 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH   91 (142)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHHH
Q psy6102         400 IAFVRKQMRHHLNLEK  415 (426)
Q Consensus       400 l~~i~~~l~~~~~a~k  415 (426)
                      ++.++..+++.+++..
T Consensus        92 lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           92 AAECHLQLGDLDGAES  107 (142)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999999999998875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.40  E-value=5.1e-12  Score=121.44  Aligned_cols=125  Identities=14%  Similarity=0.170  Sum_probs=116.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .++.+..+|..++..|+|++|+..|.++++.                +|.++.++.++|.++..+|++++|+..++++++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   65 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA   65 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999998                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHHhhHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP---NDQQILKEI------------AFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P---~n~~a~~~l------------~~i~~~l~~~~~a~k  415 (426)
                      ++|++..+++.+|.++..+|++++|+..|+++++++|   ++..++..+            +.++...++.+++..
T Consensus        66 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  141 (359)
T 3ieg_A           66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT  141 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999999999999999999999999999999   898888877            567777777776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.39  E-value=9.5e-12  Score=114.71  Aligned_cols=140  Identities=11%  Similarity=0.022  Sum_probs=94.6

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhh--cCcchHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKH--FRSYYTAALLNMAAV  335 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~--~~p~~~~~~~nlA~~  335 (426)
                      +..+..+|..++..|++++|+..|.++++..+.....                  ...+....  ..|.+..++.++|.+
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence            3456666666666777777777776666652211000                  00111222  356777777777777


Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.++|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|++++++.|.+..++..+..++...++.+++.+
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  230 (252)
T 2ho1_A          151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS  230 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777776654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=5.1e-12  Score=116.29  Aligned_cols=132  Identities=13%  Similarity=0.080  Sum_probs=116.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchH---HHHHHHHHHHHH-------------
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT---AALLNMAAVQLK-------------  338 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~---~~~~nlA~~~~~-------------  338 (426)
                      ....++.+|..+++.|+|++|+..|+++++.                .|.+.   .+++.+|.++.+             
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----------------~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~  103 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----------------NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVD  103 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCTTHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------------CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            4567899999999999999999999999998                55544   489999999987             


Q ss_pred             -----ccCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCcH--
Q psy6102         339 -----FKAYKRAINLCDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ--  394 (426)
Q Consensus       339 -----lg~~~~Ai~~~~~AL~ldp~~~kal-----------------~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~--  394 (426)
                           +|++++|+..++++++.+|++..++                 +.+|.+|..+|++++|+..|+++++..|+++  
T Consensus       104 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  183 (225)
T 2yhc_A          104 RSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQAT  183 (225)
T ss_dssp             ----CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             hhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCcc
Confidence                 5799999999999999999987554                 6889999999999999999999999999986  


Q ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         395 -QILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       395 -~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                       .++..++.++..+++.+++.. .++++..
T Consensus       184 ~~a~~~l~~~~~~~g~~~~A~~-~~~~l~~  212 (225)
T 2yhc_A          184 RDALPLMENAYRQMQMNAQAEK-VAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHH-HHHHHHh
Confidence             789999999999999999865 4555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=3.7e-12  Score=125.68  Aligned_cols=141  Identities=16%  Similarity=0.151  Sum_probs=88.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      .+..+..+|..+++.|++++|+..|++++++.+.....                  .........+|....++.++|.++
T Consensus        66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  145 (388)
T 1w3b_A           66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL  145 (388)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            56678888999999999999999999998873221110                  001223334555555666666666


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ..+|++++|+..+.++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++..
T Consensus       146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~  224 (388)
T 1w3b_A          146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA  224 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666665555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.39  E-value=1.5e-12  Score=121.32  Aligned_cols=120  Identities=13%  Similarity=0.029  Sum_probs=63.2

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .++..|..++..|+|++|+..|+++++.                +|.+..++..+|.++..+|++++|+..+++++. .|
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~   67 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----------------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV   67 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHT----------------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc
Confidence            3455666666666666666666666665                444444555555555555555555555555554 22


Q ss_pred             CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         358 NN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       358 ~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .+    ..+|+.+|.++..+|++++|+..|+++++++|.+..++..++.++..+++.+++.
T Consensus        68 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  128 (272)
T 3u4t_A           68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI  128 (272)
T ss_dssp             CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence            11    3335555555555555555555555555555555555555555555555554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=5.9e-12  Score=116.10  Aligned_cols=140  Identities=16%  Similarity=0.124  Sum_probs=86.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      .+..+..+|..++..|++++|+..|.++++..+.....                  ...+......|.+..++.++|.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            47889999999999999999999999999872211110                  002223334455555555555555


Q ss_pred             HHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILL--MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~--ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      ..+|++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|++++++.|.+..++..++.++...++.+++.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            555555555555555555  555555555555555555555555555555555555555555555555555555555554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.38  E-value=6.6e-12  Score=119.44  Aligned_cols=125  Identities=13%  Similarity=0.139  Sum_probs=116.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|++++|+..|.++++.                .|.+..++.++|.++..+|++++|+..++++++
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  234 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVEL----------------RPDDAQLWNKLGATLANGNRPQEALDAYNRALD  234 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567888999999999999999999999998                888999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------------DQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~------------n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++|++..+++.+|.++..+|++++|+..|++++.+.|+            +..++..++.++..+++.+++..
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence            99999999999999999999999999999999999999            89999999999999999988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.38  E-value=3.4e-12  Score=117.50  Aligned_cols=127  Identities=12%  Similarity=0.156  Sum_probs=106.2

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..++.+|..+++.|+|++|+..|+++++..+.             .+....+++++|.+++++|+|++|+..+++++++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            567899999999999999999999999998221             2334689999999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHH------------------cCChHHHHHHHHHHHHhCCCcHHHHH----------------
Q psy6102         356 EPNNVK---ALFRRGRAQVS------------------MNNFEQGLQDYEQALDLLPNDQQILK----------------  398 (426)
Q Consensus       356 dp~~~k---al~~lg~a~~~------------------lg~~~~Al~~l~kAl~l~P~n~~a~~----------------  398 (426)
                      +|++..   +++.+|.++..                  +|++++|+..|+++++.+|++..+..                
T Consensus        71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~  150 (225)
T 2yhc_A           71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  150 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence            999865   89999999986                  67999999999999999999976553                


Q ss_pred             -HHHHHHHHHhhHHHHHH
Q psy6102         399 -EIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       399 -~l~~i~~~l~~~~~a~k  415 (426)
                       .++.++...+++.++..
T Consensus       151 ~~~a~~~~~~~~~~~A~~  168 (225)
T 2yhc_A          151 YSVAEYYTERGAWVAVVN  168 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHH
Confidence             34455555666655543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=6.7e-12  Score=123.83  Aligned_cols=147  Identities=15%  Similarity=0.150  Sum_probs=112.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      .+..+..+|..+...|++++|+..|++++++.+.....                  ........+.|.+..++.++|.++
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  247 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY  247 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence            35667788888888888888888888888763322111                  002334455788888888888888


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.++...++.+++.. 
T Consensus       248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-  326 (388)
T 1w3b_A          248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR-  326 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH-
Confidence            8888888888888888888888888888888888888888888888888888888888888888888888888877764 


Q ss_pred             HHHhhh
Q psy6102         417 TYARMF  422 (426)
Q Consensus       417 ~~~k~f  422 (426)
                      .++++.
T Consensus       327 ~~~~al  332 (388)
T 1w3b_A          327 LYRKAL  332 (388)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.38  E-value=4.6e-12  Score=114.09  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=99.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..++..|+|++|+..|.+|+++                +|.+..+++++|.++..+|++++|+.++++++++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINR----------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ  100 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence            568999999999999999999999999999                8999999999999999999999999999999998


Q ss_pred             CCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         356 EPNNV----------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       356 dp~~~----------------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      .|.+.                .+++++|.++..+|++++|+.+|+++++++|++..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          101 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            88877                99999999999999999999999999999997743

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.38  E-value=4.5e-12  Score=121.56  Aligned_cols=125  Identities=10%  Similarity=-0.033  Sum_probs=110.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH-------
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN-------  347 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~-------  347 (426)
                      ....+..+|..+...|++++|+..|+++++.                +|.+..+++++|.+++++|++++|+.       
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL----------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            5567889999999999999999999999999                88888999999999888888887764       


Q ss_pred             ---------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc--HHHHH
Q psy6102         348 ---------------------------LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILK  398 (426)
Q Consensus       348 ---------------------------~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n--~~a~~  398 (426)
                                                 .+++++.++|+++.+++.+|.+|...|++++|+..|+++++++|++  ..++.
T Consensus       180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~  259 (287)
T 3qou_A          180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX  259 (287)
T ss_dssp             GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred             hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence                                       4555677899999999999999999999999999999999999998  88999


Q ss_pred             HHHHHHHHHhhHHHHHH
Q psy6102         399 EIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       399 ~l~~i~~~l~~~~~a~k  415 (426)
                      .+..++..+++..++..
T Consensus       260 ~l~~~~~~~g~~~~a~~  276 (287)
T 3qou_A          260 TFQEILAALGTGDALAS  276 (287)
T ss_dssp             HHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHcCCCCcHHH
Confidence            99999999988776653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=9.1e-12  Score=103.22  Aligned_cols=94  Identities=12%  Similarity=0.139  Sum_probs=89.6

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      |..+..+.++|.++++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHH
Q psy6102         403 VRKQMRHHLNLEKM  416 (426)
Q Consensus       403 i~~~l~~~~~a~k~  416 (426)
                      ++..+++++++...
T Consensus        81 ~~~~~~~~~~A~~~   94 (126)
T 3upv_A           81 AQIAVKEYASALET   94 (126)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHHhCHHHHHHH
Confidence            99999999988753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.37  E-value=2.7e-12  Score=113.45  Aligned_cols=122  Identities=11%  Similarity=0.041  Sum_probs=97.1

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHH----------
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN----------  347 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~----------  347 (426)
                      .+...|..++..|++++|+..|+++++.                +|.+..++.++|.++.++|++++|+.          
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE----------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH----------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            4667888888899999999999999988                66666777777777777666666554          


Q ss_pred             ------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHH
Q psy6102         348 ------------------------LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIA  401 (426)
Q Consensus       348 ------------------------~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n--~~a~~~l~  401 (426)
                                              .++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..++..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~  151 (176)
T 2r5s_A           72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM  151 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence                                    4455566778888899999999999999999999999999998875  56888888


Q ss_pred             HHHHHHhhHHHHHH
Q psy6102         402 FVRKQMRHHLNLEK  415 (426)
Q Consensus       402 ~i~~~l~~~~~a~k  415 (426)
                      .++..+++.+++..
T Consensus       152 ~~~~~~g~~~~A~~  165 (176)
T 2r5s_A          152 DILSALGQGNAIAS  165 (176)
T ss_dssp             HHHHHHCSSCHHHH
T ss_pred             HHHHHhCCCCcHHH
Confidence            88888888776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.35  E-value=1.1e-11  Score=101.20  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy6102         294 DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM  373 (426)
Q Consensus       294 ~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l  373 (426)
                      .|+..|.++++.                +|.+..+++++|.+++.+|++++|+..++++++++|.+..+|+.+|.++..+
T Consensus         3 ~a~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQ----------------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTT----------------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Confidence            578889999988                8999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHhhHHH
Q psy6102         374 NNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLN  412 (426)
Q Consensus       374 g~~~~Al~~l~kAl~l~P~--n~~a~~~l~~i~~~l~~~~~  412 (426)
                      |++++|+..|++++++.|.  +..+...+......+++...
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~~~  107 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDA  107 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccccC
Confidence            9999999999999999884  55666777777666665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.35  E-value=6e-13  Score=143.25  Aligned_cols=117  Identities=10%  Similarity=-0.006  Sum_probs=110.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++.+|..++..|+|++|+..|++|+++                +|.+..+++++|.++.++|++++ +++|++|++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~  528 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDT----------------FPGELAPKLALAATAELAGNTDE-HKFYQTVWS  528 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence            4678999999999999999999999999999                99999999999999999999999 999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      ++|++..+|+++|.++..+|++++|+++|++|++++|++..++..++.++...+
T Consensus       529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred             hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999999999999975533

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.35  E-value=1.7e-11  Score=122.78  Aligned_cols=126  Identities=14%  Similarity=0.168  Sum_probs=115.8

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..+++.|+|++|+..|+++++.                .|.+..+++.+|.++..+|++++|+.++++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999998                89999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHH------------HHHHHHHhhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEI------------AFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~---~a~~~l------------~~i~~~l~~~~~a~k  415 (426)
                      +++|++..+++.+|.+|..+|++++|+..|+++++++|++.   .++..+            +.++...++.+++..
T Consensus        88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A           88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999998   777666            444666777776654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.35  E-value=8.7e-12  Score=118.77  Aligned_cols=125  Identities=18%  Similarity=0.116  Sum_probs=119.5

Q ss_pred             HHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .+..+..+|..++..| ++++|+.+|.++++.                .|.+..+|..+|.++..+|++++|+..+++++
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  152 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTL----------------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA  152 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----------------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3467889999999999 999999999999998                89999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++.|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.++...++.+++..
T Consensus       153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          153 QLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=5.3e-12  Score=117.61  Aligned_cols=119  Identities=13%  Similarity=0.076  Sum_probs=111.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..+...|++++|+..|.++++.                +|.+..++.++|.++..+|++++|+.+++++++
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR----------------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            4667899999999999999999999999999                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      ++|.++.+++.+|...+..+++++|++.|+++++++|++..++..++.++..+++
T Consensus       137 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          137 PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            9999999999999555556699999999999999999999999999999998876

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=5.8e-13  Score=107.06  Aligned_cols=95  Identities=20%  Similarity=0.291  Sum_probs=78.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|+|++|+..|++|+++                .|.++.++.++|.|+.++|++++|+.+++++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA----------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4567788888888888888888888888888                788888888888888888888888888888888


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102         355 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQ  385 (426)
Q Consensus       355 ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~k  385 (426)
                      ++|++      ..+++++|.++..+|++++|+..+++
T Consensus        67 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           67 YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            88888      88888888888888888777766553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.34  E-value=9.2e-12  Score=119.38  Aligned_cols=132  Identities=7%  Similarity=0.022  Sum_probs=114.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc-cCHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-KAYKRAINLCDDI  352 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l-g~~~~Ai~~~~~A  352 (426)
                      ..+..+.++|..+...|+|++|+.+|.+|+++.+....          ......++.++|.+|... |++++|+.+|++|
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A  144 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ----------FRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            35778999999999999999999999999998544321          122367899999999995 9999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHHhhHHHHHH
Q psy6102         353 LLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ-------ILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       353 L~ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~-------a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++.|..      ..++.++|.++..+|++++|+.+|++++++.|++..       ++..++.++..+++..++..
T Consensus       145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  220 (292)
T 1qqe_A          145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR  220 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9998854      678999999999999999999999999999998754       56888999999999988865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=8.9e-12  Score=115.60  Aligned_cols=134  Identities=21%  Similarity=0.155  Sum_probs=119.8

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|+|++|+.+|.+++++......        ...|....++.++|.++..+|++++|+.++.+++
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG--------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            36788999999999999999999999999998533200        1157788999999999999999999999999999


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--------LPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~l--------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--------~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .+        +|....+++++|.++..+|++++|+..|++++.+        .|....++..++.++...++.+++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            98        5778999999999999999999999999999999        78888999999999999999988865

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.34  E-value=1.7e-11  Score=113.99  Aligned_cols=124  Identities=9%  Similarity=-0.017  Sum_probs=113.1

Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      ..++..+...++|++|+..|.++++..+            ...|.++.++..+|.++..+|++++|+..++++++++|.+
T Consensus         9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~   76 (275)
T 1xnf_A            9 EVLAVPLQPTLQQEVILARMEQILASRA------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM   76 (275)
T ss_dssp             GGSCCCCCCCHHHHHHHHHHHHHHTSSC------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             cceeeccCccchHHHHHHHHHHHHhccc------------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc
Confidence            4566677788999999999999998611            0136788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.+++.+|.++..+|++++|+.+|+++++++|.+..++..++.++..+++.+++..
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.33  E-value=2.1e-11  Score=117.34  Aligned_cols=124  Identities=14%  Similarity=0.120  Sum_probs=73.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHH--HHccCHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ--LKFKAYKRAINLCDDI  352 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~--~~lg~~~~Ai~~~~~A  352 (426)
                      ....+..+|..+.+.|++++|+..|+++++.                +|.........+.+.  ...|++++|+..++++
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~----------------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ----------------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            4567788888899999999999999998887                444332222222111  1225555555555555


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      ++.+|+++.+|+.+|.++..+|++++|++.|++|++++|+++.++.+++.+...+++..++.
T Consensus       193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            55555555555555555555555555555555555555555555555555555555554433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.33  E-value=1.4e-11  Score=123.41  Aligned_cols=117  Identities=26%  Similarity=0.391  Sum_probs=107.7

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch----HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY----TAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~----~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ..+..+|..++..|++++|+..|.+++++                .|.+    ..++.++|.++.++|++++|+..++++
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  321 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKT----------------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV  321 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34466699999999999999999999998                6666    458999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      ++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus       322 ~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999988766554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.33  E-value=1.5e-11  Score=117.02  Aligned_cols=96  Identities=17%  Similarity=0.165  Sum_probs=84.6

Q ss_pred             hcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         320 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME---------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       320 ~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld---------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                      ...|.+..++.++|.++..+|++++|+..+++++.+.         |.++.+++.+|.++..+|++++|+..|+++++++
T Consensus       187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            3378888999999999999999999999999999886         6778899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         391 PNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       391 P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      |++..++..++.++..+++.+++..
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~  291 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVD  291 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999999888888765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.33  E-value=1.1e-11  Score=104.03  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-------H
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-------Q  395 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~-------~  395 (426)
                      ++.+.++.++|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|++++|+++|++|++++|++.       .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            445778999999999999999999999999999999999999999999999999999999999999998763       4


Q ss_pred             HHHHHHHHHHHHhhHHHHHH
Q psy6102         396 ILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       396 a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++..++.++..+++++++..
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~  104 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQ  104 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHH
Confidence            77888899999999988865

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.33  E-value=2.8e-11  Score=117.57  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=112.0

Q ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      ..|..+ ..|++++|+..|.++++.                .|.  ...++.++|.++.++|++++|+..+++++.++|+
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~----------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  249 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRL----------------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN  249 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHH----------------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHh----------------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            455555 999999999999999998                788  8999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       359 ~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++..
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.31  E-value=3.5e-11  Score=100.20  Aligned_cols=95  Identities=14%  Similarity=0.077  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      ..++.+|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+.+|++|++++|++..++..++.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHhhh
Q psy6102         407 MRHHLNLEKMTYARMF  422 (426)
Q Consensus       407 l~~~~~a~k~~~~k~f  422 (426)
                      +++.+++.. .+.+.+
T Consensus        98 ~g~~~~A~~-~~~~al  112 (121)
T 1hxi_A           98 EHNANAALA-SLRAWL  112 (121)
T ss_dssp             HHHHHHHHH-HHHHHH
T ss_pred             cCCHHHHHH-HHHHHH
Confidence            999998876 444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.30  E-value=3.1e-11  Score=105.01  Aligned_cols=95  Identities=20%  Similarity=0.209  Sum_probs=91.7

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      ++..+..++.+|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHH
Q psy6102         402 FVRKQMRHHLNLEKM  416 (426)
Q Consensus       402 ~i~~~l~~~~~a~k~  416 (426)
                      .++..+++++++...
T Consensus        87 ~~~~~~g~~~~A~~~  101 (164)
T 3sz7_A           87 LARFDMADYKGAKEA  101 (164)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHccCHHHHHHH
Confidence            999999999988763

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.29  E-value=5e-11  Score=120.87  Aligned_cols=104  Identities=19%  Similarity=0.327  Sum_probs=99.2

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      .+.+..++.+|+.+++.|+|++|+..|+++++.                +| +..+|.++|.|++++|++++|+.+++++
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALEL----------------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            357889999999999999999999999999999                77 5899999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      ++++|++..+++.+|.++..+|++++|+..|++++.++|.+
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  106 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN  106 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999999854

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.28  E-value=8.9e-11  Score=111.55  Aligned_cols=117  Identities=14%  Similarity=0.164  Sum_probs=111.6

Q ss_pred             cc-hhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q psy6102         283 GN-EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  361 (426)
Q Consensus       283 G~-~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~k  361 (426)
                      |. .+...|++++|+..|.++++.                .|.+..++..+|.++..+|++++|+..++++++++|+++.
T Consensus       144 ~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  207 (327)
T 3cv0_A          144 EDFFFAAPNEYRECRTLLHAALEM----------------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ  207 (327)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhHHHHHcccHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            44 689999999999999999998                8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       362 al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++.+
T Consensus       208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          208 LWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999999999999999999999999999999999999988865

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.27  E-value=9.1e-11  Score=97.88  Aligned_cols=94  Identities=16%  Similarity=0.063  Sum_probs=90.4

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      ++..+..++.+|.+++..|+|++|+..+++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHH
Q psy6102         402 FVRKQMRHHLNLEK  415 (426)
Q Consensus       402 ~i~~~l~~~~~a~k  415 (426)
                      .++..+++.+++..
T Consensus        85 ~~~~~~~~~~~A~~   98 (137)
T 3q49_B           85 QCQLEMESYDEAIA   98 (137)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHH
Confidence            99999999988864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.27  E-value=5e-11  Score=121.96  Aligned_cols=122  Identities=11%  Similarity=0.080  Sum_probs=103.4

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .+..+|..++..|++++|+..|.++++.                .|.+..++..+|.++..+|++++|+..+++++.++|
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  341 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDL----------------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP  341 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhcc----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence            3444444455555555555555555544                899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++..
T Consensus       342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  399 (537)
T 3fp2_A          342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK  399 (537)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988865

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.27  E-value=2.9e-11  Score=115.90  Aligned_cols=132  Identities=11%  Similarity=0.082  Sum_probs=113.2

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+...|+.+...|+|++|+.+|.+|+++.+....          .+..+.+|.++|.+|.++|++++|+.+|++|+
T Consensus        35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al  104 (292)
T 1qqe_A           35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN----------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            35556667788899999999999999999998544321          12347899999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNN------VKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~------~kal~~lg~a~~~l-g~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .+.|..      ..++.++|.+|..+ |++++|+.+|++|+++.|.+      ..++..++.++..+++++++..
T Consensus       105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  179 (292)
T 1qqe_A          105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            998754      67899999999996 99999999999999998864      4678899999999999998875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.27  E-value=1.7e-10  Score=110.98  Aligned_cols=98  Identities=12%  Similarity=0.007  Sum_probs=91.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  365 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~  365 (426)
                      +...|++++|+..|+++++.                .|.++.+++++|.++.++|++++|+..++++|+++|+++.++++
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADK----------------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHH----------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34569999999999999999                89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHH-HHHHHHHHHHhCCCcHHHHHH
Q psy6102         366 RGRAQVSMNNFEQ-GLQDYEQALDLLPNDQQILKE  399 (426)
Q Consensus       366 lg~a~~~lg~~~~-Al~~l~kAl~l~P~n~~a~~~  399 (426)
                      +|.++..+|++++ |.++++++++++|+++.+...
T Consensus       240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999986 568999999999999987653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.27  E-value=5.9e-11  Score=96.92  Aligned_cols=102  Identities=25%  Similarity=0.430  Sum_probs=96.9

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ...+..+|..++..|++++|+..|.+++..                .|....++.++|.++...|++++|+..+++++.+
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            456788899999999999999999999998                8888999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      .|.+..+++.+|.++..+|++++|+..|++++.++|.+
T Consensus        99 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            99999999999999999999999999999999999864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.26  E-value=7.2e-11  Score=91.22  Aligned_cols=85  Identities=22%  Similarity=0.423  Sum_probs=80.9

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      +....+++++|.++...+++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH
Q psy6102         403 VRKQM  407 (426)
Q Consensus       403 i~~~l  407 (426)
                      ++..+
T Consensus        86 ~~~~~   90 (91)
T 1na3_A           86 AKQKQ   90 (91)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.26  E-value=3.6e-11  Score=125.83  Aligned_cols=112  Identities=17%  Similarity=0.107  Sum_probs=90.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102         289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  368 (426)
Q Consensus       289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~  368 (426)
                      .|++++|+..|+++++.                +|.+..++.++|.++.++|++++|++.++++++++|++..+++.+|.
T Consensus         2 ~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH----------------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGR   65 (568)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            47899999999999998                89999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         369 AQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       369 a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ++..+|++++|++.|+++++++|++..++..++.++..+++.+++...
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  113 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA  113 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999988753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.25  E-value=5.7e-11  Score=104.22  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh---
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-------NVK-----ALFRRGRAQVSMNNFEQGLQDYEQALDL---  389 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~-------~~k-----al~~lg~a~~~lg~~~~Al~~l~kAl~l---  389 (426)
                      ....+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++||++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            3567899999999999999999999999999999       554     9999999999999999999999999999   


Q ss_pred             ----CCCcHHHH----HHHHHHHHHHhhHHHHHH
Q psy6102         390 ----LPNDQQIL----KEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       390 ----~P~n~~a~----~~l~~i~~~l~~~~~a~k  415 (426)
                          +|++..++    .+++.++..+++++++..
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~  123 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP  123 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence                99999999    999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.25  E-value=6.8e-12  Score=123.32  Aligned_cols=113  Identities=12%  Similarity=0.144  Sum_probs=106.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--------  359 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~--------  359 (426)
                      ..+++++|+..|.++++.                +|..+.++.++|.+++++|+|++|+..|++|+.++|.+        
T Consensus       125 ~L~~~~~A~~~~~~a~~~----------------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~  188 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE----------------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA  188 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH
T ss_pred             EEeecccccchhcCCHHH----------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHH
Confidence            566777888888888887                78899999999999999999999999999999999999        


Q ss_pred             -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         360 -------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       360 -------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                             ..+|+++|.||..+|++++|+.+|++|++++|++..++..++.++..++++++|...
T Consensus       189 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  252 (336)
T 1p5q_A          189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD  252 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence                   799999999999999999999999999999999999999999999999999988753

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.24  E-value=8.1e-11  Score=118.84  Aligned_cols=126  Identities=13%  Similarity=0.045  Sum_probs=104.4

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|.+++.+|+|++|+.+|++|+++.+....       ...+|.....|.|+|.+|..+|++++|+.++++++++
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i  123 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV  123 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            456788999999999999999999999998654321       2236777889999999999999999999999999887


Q ss_pred             C--------CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         356 E--------PNNVKALFRRGRAQVSM--NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       356 d--------p~~~kal~~lg~a~~~l--g~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      .        +..+.++..+|.++...  ++|++|+++|++|++++|+++.+...++.+...++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            3        45688899998887665  46899999999999999999998888887765544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=4.2e-11  Score=110.98  Aligned_cols=141  Identities=14%  Similarity=0.105  Sum_probs=121.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|++++|+.+|.+++++......        .-.|....++.++|.++..+|++++|+..+++++
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778999999999999999999999999998533210        1147788999999999999999999999999999


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------------------------
Q psy6102         354 LM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL------------------------------------  389 (426)
Q Consensus       354 ~l--------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l------------------------------------  389 (426)
                      ++        +|....+++.+|.++..+|++++|+..|++++++                                    
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY  234 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH
Confidence            99        7888999999999999999999999999999987                                    


Q ss_pred             -------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         390 -------------LPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       390 -------------~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                                   .|....++..++.++...++.+++.. .|++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~  280 (283)
T 3edt_B          235 GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT-LEDCASR  280 (283)
T ss_dssp             --------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHT
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence                         25556788999999999999998876 4555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.23  E-value=1.1e-10  Score=119.43  Aligned_cols=134  Identities=13%  Similarity=0.179  Sum_probs=124.0

Q ss_pred             ccccchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHH
Q psy6102         266 PLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA  345 (426)
Q Consensus       266 P~~~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~A  345 (426)
                      |.........+..+..+|..++..|++++|+..|.++++.                .|. ..++..+|.++..+|++++|
T Consensus       233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------------~~~-~~~~~~l~~~~~~~~~~~~A  295 (537)
T 3fp2_A          233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL----------------HPT-PNSYIFLALTLADKENSQEF  295 (537)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----------------CCC-chHHHHHHHHHHHhcCHHHH
Confidence            3333344456778999999999999999999999999998                888 89999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       346 i~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      +..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++...
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  366 (537)
T 3fp2_A          296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF  366 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.23  E-value=1e-10  Score=98.77  Aligned_cols=133  Identities=13%  Similarity=0.180  Sum_probs=113.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|+|++|+.+|.+++++.+....          ......++.++|.++..+|++++|+..+++++
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD----------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35778999999999999999999999999998654321          23345799999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         354 LMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       354 ~ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~------n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      .+.+..      ..+++.+|.++..+|++++|+..+++++.+.+.      ...+...++.++..+++.+++...
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence            886543      778999999999999999999999999987432      246788899999999999888653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.23  E-value=4.2e-11  Score=95.30  Aligned_cols=95  Identities=13%  Similarity=0.285  Sum_probs=90.9

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKE  399 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~  399 (426)
                      +|.+..++..+|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHH-hhHHHHHHH
Q psy6102         400 IAFVRKQM-RHHLNLEKM  416 (426)
Q Consensus       400 l~~i~~~l-~~~~~a~k~  416 (426)
                      ++.++..+ ++.+++...
T Consensus        82 l~~~~~~~~~~~~~A~~~   99 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIA   99 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHH
Confidence            99999999 998887653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.23  E-value=8.9e-11  Score=94.06  Aligned_cols=87  Identities=13%  Similarity=0.208  Sum_probs=81.3

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILK  398 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n------~~a~~  398 (426)
                      .+..+.++|.+++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+++|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      88888


Q ss_pred             HHHHHHHHHhhHH
Q psy6102         399 EIAFVRKQMRHHL  411 (426)
Q Consensus       399 ~l~~i~~~l~~~~  411 (426)
                      .++.++..+++.+
T Consensus        83 ~~~~~~~~~~~~~   95 (111)
T 2l6j_A           83 RLELAQGAVGSVQ   95 (111)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhHh
Confidence            8888888877544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.23  E-value=1.2e-10  Score=120.94  Aligned_cols=130  Identities=14%  Similarity=0.134  Sum_probs=120.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..+++.|++++|+..|.++++.                .|.+..+|..++.++.+.|++++|++.++++++
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM----------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567888999999999999999999999988                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      ++|.+..+|+.+|.++...|++++|++.|+++++++|.+..++..++.++...++.+++.+ .|.++
T Consensus       436 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~  501 (597)
T 2xpi_A          436 LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN-HFQNA  501 (597)
T ss_dssp             TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988865 44444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.21  E-value=9.6e-11  Score=93.96  Aligned_cols=87  Identities=16%  Similarity=0.298  Sum_probs=76.1

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKE  399 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--n~~a~~~  399 (426)
                      +|.++.+++++|.+++++|++++|+..++++++++|+++.+|+.+|.+|..+|++++|++.|++++++.|.  +..+...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999874  4555566


Q ss_pred             HHHHHHHHh
Q psy6102         400 IAFVRKQMR  408 (426)
Q Consensus       400 l~~i~~~l~  408 (426)
                      +..++....
T Consensus        83 l~~~l~~~~   91 (100)
T 3ma5_A           83 LQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcc
Confidence            655555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.18  E-value=1.7e-10  Score=114.07  Aligned_cols=133  Identities=14%  Similarity=0.156  Sum_probs=116.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|++++|+.+|.+|+++.+....         ..+....++.++|.++..+|++++|+..+++|+
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST---------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            46788999999999999999999999999998654321         124557899999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hC-CCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALD-----LL-PNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~-----l~-P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++.+..      ..+++++|.+|..+|++++|+.+|++|++     .+ |....++..++.++..+++.++|..
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  285 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE  285 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            886543      36899999999999999999999999999     46 8888999999999999999988865

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.17  E-value=4.7e-10  Score=116.57  Aligned_cols=146  Identities=15%  Similarity=0.122  Sum_probs=114.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------------------chhhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------------QSKTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------------------~~~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      ....|..+|..+.+.|++++|+..|+++++..+.....                  .......+..|.++.+|..+|.++
T Consensus       406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA  485 (597)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            45677888888888888888888888887753321111                  002334445788888999999999


Q ss_pred             HHccCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         337 LKFKAYKRAINLCDDILLM------EPNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~l------dp~~-~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      .+.|++++|++.+++++++      +|++ ..+|..+|.++...|++++|++.|+++++++|++..++..++.++...++
T Consensus       486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI  565 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            9999999999999999888      6665 78999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhh
Q psy6102         410 HLNLEKMTYARM  421 (426)
Q Consensus       410 ~~~a~k~~~~k~  421 (426)
                      .+++.. .|+++
T Consensus       566 ~~~A~~-~~~~~  576 (597)
T 2xpi_A          566 PGLAIT-HLHES  576 (597)
T ss_dssp             HHHHHH-HHHHH
T ss_pred             HHHHHH-HHHHH
Confidence            888765 34443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.16  E-value=2.6e-11  Score=124.24  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=105.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Q psy6102         288 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--------  359 (426)
Q Consensus       288 ~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~--------  359 (426)
                      ..++|++|+..|.++++.                .|..+.++.++|.+++++|+|++|+..|++||+++|.+        
T Consensus       246 ~l~~~~~A~~~~~~~~~~----------------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~  309 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE----------------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKES  309 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH
T ss_pred             hhhhcccCcchhhcCHHH----------------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHH
Confidence            556777888888888877                78889999999999999999999999999999999998        


Q ss_pred             -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         360 -------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       360 -------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                             ..+|+++|.||..+|+|++|+.+|++|++++|++..++..++.++..++++++|...
T Consensus       310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~  373 (457)
T 1kt0_A          310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD  373 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence                   799999999999999999999999999999999999999999999999999988753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.16  E-value=3.9e-10  Score=92.64  Aligned_cols=95  Identities=15%  Similarity=0.175  Sum_probs=91.6

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      .|.....++.+|.++++.|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHH
Q psy6102         402 FVRKQMRHHLNLEKM  416 (426)
Q Consensus       402 ~i~~~l~~~~~a~k~  416 (426)
                      .++..+++.+++.+.
T Consensus        92 ~~~~~~~~~~~A~~~  106 (133)
T 2lni_A           92 AALEAMKDYTKAMDV  106 (133)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHHhhHHHHHHH
Confidence            999999999988753

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=2.6e-10  Score=88.03  Aligned_cols=84  Identities=26%  Similarity=0.353  Sum_probs=79.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..++|++|+..|.++++.                .|.+..++.++|.++.++|++++|+.+++++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            5678899999999999999999999999999                899999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcC
Q psy6102         355 MEPNNVKALFRRGRAQVSMN  374 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg  374 (426)
                      ++|++..+++.+|.++..+|
T Consensus        72 ~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           72 LDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HCTTCHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=2.3e-10  Score=110.20  Aligned_cols=123  Identities=4%  Similarity=-0.053  Sum_probs=76.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHH-HHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~-~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .+..|...|..+...|++++|+..|++|+++                .|.+.. +|.++|.++.+.|++++|+..|++|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4456777777777778888888888888776                555544 56666666666666666666666666


Q ss_pred             HhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVS-MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  413 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~-lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a  413 (426)
                      +++|.+..+|...+.+... +|++++|+..|+++++++|++..++..+..++..+++.+++
T Consensus       162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A  222 (308)
T 2ond_A          162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            6666555555544444322 46666666666666666666666666666555555555444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=2e-10  Score=116.39  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=94.3

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+..+|..++..|++++|+..|.++++.                .|.+..++.++|.++.++|++++|+..+++++.++
T Consensus       339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  402 (514)
T 2gw1_A          339 FPYIQLACLAYRENKFDDCETLFSEAKRK----------------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE  402 (514)
T ss_dssp             HHHHHHHHHTTTTTCHHHHHHHHHHHHHH----------------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            45666777777777777777777777776                67777778888888888888888888888888777


Q ss_pred             CCCHH------HHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         357 PNNVK------ALFRRGRAQVS---MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       357 p~~~k------al~~lg~a~~~---lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      |++..      +++.+|.++..   +|++++|+..|++++.++|++..++..++.++...++.+++..
T Consensus       403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  470 (514)
T 2gw1_A          403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT  470 (514)
T ss_dssp             HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence            77644      77888888887   7888888888888888888888887888888877777776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.15  E-value=3.5e-11  Score=95.25  Aligned_cols=89  Identities=12%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy6102         281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  359 (426)
Q Consensus       281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~-~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~  359 (426)
                      .+|..++..|+|++|+..|+++++.                +|.+.. +++++|.++..+|++++|+.+|+++++++|++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT----------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH----------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            4455555555555555555555555                555555 55555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      ..++++        +.+.+|+..|++++.++|++
T Consensus        69 ~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           69 PALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             THHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            555533        34445555555555555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=2.5e-10  Score=107.65  Aligned_cols=134  Identities=22%  Similarity=0.181  Sum_probs=118.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|++++|+.+|.+++++.....        ....+....++.++|.++..+|++++|+..+++++
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  138 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL--------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  138 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            3677899999999999999999999999999853321        01146778999999999999999999999999999


Q ss_pred             HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--------LPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--------~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++.        |....+++.+|.++..+|++++|++.|++++.+        .|....++..++.++..+++.+++..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            884        667889999999999999999999999999998        77788899999999999999998865

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.15  E-value=1.4e-10  Score=111.97  Aligned_cols=107  Identities=8%  Similarity=0.043  Sum_probs=55.9

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..+.. |+|++|+.+|++|+++.+....          ......++.++|.++.++|+|++|+.+|++++.+
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER----------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444555555555 5555555555555555322110          1122445555666666666666666666666555


Q ss_pred             CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         356 EPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       356 dp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      .|.+      ..+++.+|.++..+|++++|+.+|++++ ++|...
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            4332      2355555555555566666666666666 555554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=3.3e-10  Score=106.73  Aligned_cols=135  Identities=18%  Similarity=0.157  Sum_probs=118.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|++++|+.+|.+++++.....        ....|....++.++|.++..+|++++|+..+++++
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL--------GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3677899999999999999999999999999853320        01146778899999999999999999999999999


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------------------------
Q psy6102         354 LM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL------------------------------------  389 (426)
Q Consensus       354 ~l--------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l------------------------------------  389 (426)
                      .+        +|....+++.+|.++..+|++++|+..|++++++                                    
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF  260 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence            98        7788899999999999999999999999999985                                    


Q ss_pred             -------------CCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         390 -------------LPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       390 -------------~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                                   +|.+..++..++.++...++.+++...
T Consensus       261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  300 (311)
T 3nf1_A          261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL  300 (311)
T ss_dssp             CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence                         466778999999999999999988763

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.14  E-value=2.6e-10  Score=98.82  Aligned_cols=93  Identities=16%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLM------------------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQ  385 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l------------------dp~~~kal~~lg~a~~~lg~~~~Al~~l~k  385 (426)
                      ..+..+.++|..+++.|+|++|+..|+++|.+                  +|.+..+|+++|.||..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45778999999999999999999999999999                  788889999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         386 ALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       386 Al~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      |++++|++..++..++.++..+++++++...
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  119 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEED  119 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence            9999999999999999999999999988763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=5e-10  Score=118.01  Aligned_cols=117  Identities=9%  Similarity=0.026  Sum_probs=111.6

Q ss_pred             HHHHHHhccchhhhhhh----------HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc--CH
Q psy6102         275 VIRTIKNSGNEYFKLNR----------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK--AY  342 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~----------y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg--~~  342 (426)
                      ...+|..++..+...++          +++|+..|.++++.                +|.+..+|.+|+.++.+++  ++
T Consensus        62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----------------~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----------------NPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcccccH
Confidence            56778888888888888          99999999999999                9999999999999999999  77


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       343 ~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg-~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++|+++|+++|++||.|..||..|+.++..++ .+++|+++++++++++|+|..+|...+.+...+
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999999999999999999999 999999999999999999999999999998886

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.14  E-value=1.2e-09  Score=87.30  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      .+..++.+|.+++..|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..++++++++|++..++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHH
Q psy6102         405 KQMRHHLNLEKM  416 (426)
Q Consensus       405 ~~l~~~~~a~k~  416 (426)
                      ..+++.+++...
T Consensus        83 ~~~~~~~~A~~~   94 (118)
T 1elw_A           83 EFLNRFEEAKRT   94 (118)
T ss_dssp             HHTTCHHHHHHH
T ss_pred             HHHhhHHHHHHH
Confidence            999999888753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.12  E-value=3e-10  Score=100.80  Aligned_cols=131  Identities=12%  Similarity=0.143  Sum_probs=111.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|+|++|+.+|.+++++......          .+....++.++|.++..+|++++|+..+.+++.
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   94 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD----------HTAEHRALHQVGMVERMAGNWDAARRCFLEERE   94 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5778899999999999999999999999998544321          466788999999999999999999999999999


Q ss_pred             h---CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 M---EP----NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--ND----QQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 l---dp----~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P--~n----~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +   .+    ....+++++|.++..+|++++|+..+++++.+.+  .+    ..+...++.++...++.+++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A           95 LLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            8   34    3367899999999999999999999999998743  22    2345788999999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.12  E-value=5.5e-10  Score=106.63  Aligned_cols=134  Identities=13%  Similarity=0.023  Sum_probs=109.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL-  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL-  353 (426)
                      ....++..|..+...|+|++|+.+|.+|+++......          ......++.++|.+|..+|+|++|+.++++|+ 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~  183 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID----------VYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC----------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455677889999999999999999999986322110          12236799999999999999999999999999 


Q ss_pred             --HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102         354 --LMEPNNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNLEKMTY  418 (426)
Q Consensus       354 --~ldp~~~----kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~------n~~a~~~l~~i~~~l~~~~~a~k~~~  418 (426)
                        +..|++.    .+++++|.+|..+|+|++|+.+|++|+++.++      -..+...++.++..+++.+++....+
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~  260 (293)
T 2qfc_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence              4566643    79999999999999999999999999998643      26788999999999999888833333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.12  E-value=1.8e-10  Score=103.35  Aligned_cols=95  Identities=7%  Similarity=0.026  Sum_probs=89.7

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV----------------KALFRRGRAQVSMNNFEQGLQDYEQ  385 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~----------------kal~~lg~a~~~lg~~~~Al~~l~k  385 (426)
                      .+..+..+..+|.++++.|+|++|+..|++++.+.|.++                .+++++|.++..+|++++|+.+|++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            456688999999999999999999999999999999887                9999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         386 ALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       386 Al~l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      +++++|++..++..++.++..+++++++...
T Consensus       114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  144 (198)
T 2fbn_A          114 VLKIDKNNVKALYKLGVANMYFGFLEEAKEN  144 (198)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence            9999999999999999999999999988653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.12  E-value=1.2e-09  Score=88.90  Aligned_cols=95  Identities=17%  Similarity=0.278  Sum_probs=91.1

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      +|....++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..+++++.++|.+..++..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHH
Q psy6102         402 FVRKQMRHHLNLEKM  416 (426)
Q Consensus       402 ~i~~~l~~~~~a~k~  416 (426)
                      .++..+++.+++...
T Consensus        88 ~~~~~~~~~~~A~~~  102 (131)
T 2vyi_A           88 LALSSLNKHVEAVAY  102 (131)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHhCCHHHHHHH
Confidence            999999999888763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.11  E-value=8.6e-10  Score=108.99  Aligned_cols=108  Identities=15%  Similarity=0.127  Sum_probs=97.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..+...|+|++|+.+|.+|+++.+....          .+....++.++|.+|..+|++++|+.++++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN----------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999998654321          23457799999999999999999999999999


Q ss_pred             H-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         354 L-----MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       354 ~-----ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                      .     .+|..+.+++.+|.++..+|++++|+..+++++++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9     7888899999999999999999999999999999854

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.11  E-value=7.6e-10  Score=109.35  Aligned_cols=107  Identities=13%  Similarity=0.180  Sum_probs=96.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..+...|+|++|+.+|.+|+++.+....          .+....++.++|.+|..+|++++|+.++++|+
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46778999999999999999999999999998654321          34556799999999999999999999999999


Q ss_pred             H-----hC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy6102         354 L-----ME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       354 ~-----ld-p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~  390 (426)
                      +     .+ |..+.+++++|.++..+|++++|+..+++|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            9     46 8889999999999999999999999999999984

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.11  E-value=7e-10  Score=109.66  Aligned_cols=134  Identities=10%  Similarity=0.084  Sum_probs=117.2

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ...+..+..+|..++..|+++.|+.+|.+|+++.+....         ..+..+.++.++|.++..+|++++|++.+++|
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  208 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL---------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA  208 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            347888999999999999999999999999998544221         12346789999999999999999999999999


Q ss_pred             HHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         353 LLMEP------NNVKALFRRGRAQVSMNNFEQGLQDYEQALD-----LLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       353 L~ldp------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~-----l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +++.+      ....+++++|.+|..+|++++|+.+|++|+.     .+|....+...++.++..+++.++|..
T Consensus       209 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  282 (378)
T 3q15_A          209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ  282 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            98743      2367899999999999999999999999999     788889999999999999999998865

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.10  E-value=5.1e-10  Score=110.66  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=111.1

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchH----HHHHHHHHHHHHccCHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT----AALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~----~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      ...+..+..+|..++..|+|++|+..|++++++                .|.+.    .++..+|.++..+|++++|+.+
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  108 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA----------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQY  108 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            346778889999999999999999999999998                66654    6899999999999999999999


Q ss_pred             HHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHhh
Q psy6102         349 CDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL------LPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       349 ~~~AL~l------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l------~P~n~~a~~~l~~i~~~l~~  409 (426)
                      +++++.+      +|....+++.+|.++..+|++++|+..|++++.+      .|....++..++.++..+++
T Consensus       109 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          109 HKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9999998      6788999999999999999999999999999999      56677899999999999999

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1.3e-09  Score=91.46  Aligned_cols=96  Identities=9%  Similarity=0.054  Sum_probs=91.5

Q ss_pred             cCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         321 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       321 ~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      ..|.....++.+|.+++..|++++|+..++++++++|++   ..+++.+|.++..+|++++|+..|++++.++|++..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            367889999999999999999999999999999999998   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHH
Q psy6102         398 KEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       398 ~~l~~i~~~l~~~~~a~k~  416 (426)
                      ..++.++..+++++++...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~  121 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLD  121 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            9999999999999988653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.08  E-value=2.3e-09  Score=100.48  Aligned_cols=87  Identities=9%  Similarity=0.086  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHH
Q psy6102         325 YTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQI  396 (426)
Q Consensus       325 ~~~~~~nlA~~~~~----lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a  396 (426)
                      ++.+++++|.++..    .+++++|+.+++++++++  ++.+++.+|.+|..    .+++++|+..|++|+++.  +..+
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  148 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG  148 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence            45666666666666    666666666666666653  56666666666666    666666666666666654  4556


Q ss_pred             HHHHHHHHHH----HhhHHHHHH
Q psy6102         397 LKEIAFVRKQ----MRHHLNLEK  415 (426)
Q Consensus       397 ~~~l~~i~~~----l~~~~~a~k  415 (426)
                      ...++.++..    .++.+++..
T Consensus       149 ~~~lg~~~~~~~~~~~~~~~A~~  171 (273)
T 1ouv_A          149 CTILGSLYDAGRGTPKDLKKALA  171 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHH
Confidence            6666666665    555555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.07  E-value=9.2e-10  Score=107.78  Aligned_cols=131  Identities=13%  Similarity=0.163  Sum_probs=114.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|+|++|+.+|.+++++.+....          .+....++.++|.++..+|++++|+.++++++.
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD----------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678899999999999999999999999998654321          234466999999999999999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.|..      ..+++.+|.++..+|++++|+..|++++.+.+..      ..++..++.++..+++.+++..
T Consensus       256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            98766      8899999999999999999999999999986544      6788899999999999988865

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.07  E-value=3.6e-09  Score=85.26  Aligned_cols=94  Identities=20%  Similarity=0.308  Sum_probs=87.5

Q ss_pred             Ccch-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         322 RSYY-TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       322 ~p~~-~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      +|.. ..+++.+|.++...|++++|+..+++++.++|.+..+++.+|.++...|++++|+..|++++.++|.+..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4444 789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHH
Q psy6102         401 AFVRKQMRHHLNLEK  415 (426)
Q Consensus       401 ~~i~~~l~~~~~a~k  415 (426)
                      +.++...++.+++..
T Consensus        84 a~~~~~~~~~~~A~~   98 (125)
T 1na0_A           84 GNAYYKQGDYDEAIE   98 (125)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHhcCHHHHHH
Confidence            999999999988865

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=3.8e-10  Score=107.80  Aligned_cols=130  Identities=14%  Similarity=0.060  Sum_probs=106.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..++..++|++|+.+|.+|+++......          ......++.++|.+|..+|+|++|+.++++|+++
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID----------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC----------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445556899999999999999999999996221110          1123568999999999999999999999999953


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhh-HHHHHH
Q psy6102         356 -------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRH-HLNLEK  415 (426)
Q Consensus       356 -------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~~~l~~-~~~a~k  415 (426)
                             .+....+++++|.+|..+|+|++|+.++++|+++.+..      ..++..++.++..+++ +++|..
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence                   23346789999999999999999999999999987554      7899999999999995 466653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.07  E-value=1.2e-09  Score=107.08  Aligned_cols=132  Identities=17%  Similarity=0.195  Sum_probs=115.8

Q ss_pred             HHHHHHhccchhhhhhh--------------------HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNR--------------------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA  334 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~--------------------y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~  334 (426)
                      .+..+..+|..++..|+                    |++|+.+|.+++++......          .+....++.++|.
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~  195 (406)
T 3sf4_A          126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD----------RAAQGRAFGNLGN  195 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC----------cHHHHHHHHHHHH
Confidence            56789999999999999                    99999999999998654321          4566789999999


Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHH
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPNNV------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAF  402 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n------~~a~~~l~~  402 (426)
                      ++..+|++++|+..+++++++.+...      .+++.+|.++..+|++++|+..|++++.+.|..      ..++..++.
T Consensus       196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  275 (406)
T 3sf4_A          196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN  275 (406)
T ss_dssp             HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence            99999999999999999999876553      399999999999999999999999999998766      678899999


Q ss_pred             HHHHHhhHHHHHHH
Q psy6102         403 VRKQMRHHLNLEKM  416 (426)
Q Consensus       403 i~~~l~~~~~a~k~  416 (426)
                      ++...++.+++...
T Consensus       276 ~~~~~g~~~~A~~~  289 (406)
T 3sf4_A          276 TYTLLQDYEKAIDY  289 (406)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHhCcHHHHHHH
Confidence            99999999888653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.06  E-value=9.1e-10  Score=108.85  Aligned_cols=132  Identities=16%  Similarity=0.186  Sum_probs=105.8

Q ss_pred             hHHHHHHhccchhhhhhh-----------------HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNR-----------------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~-----------------y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      ..+..+..+|..+...|+                 |++|+.+|.+++++......          .+....++.++|.++
T Consensus       164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~  233 (411)
T 4a1s_A          164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD----------RGAQGRACGNLGNTY  233 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHH
Confidence            357788999999999999                 99999999999988544321          355667888888888


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNV------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVR  404 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~  404 (426)
                      ..+|++++|+.++++++++.+...      .+++.+|.++..+|++++|+..|++++.+.|..      ..++..++.++
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  313 (411)
T 4a1s_A          234 YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY  313 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            888888888888888888776443      388888888888888888888888888887744      56777888888


Q ss_pred             HHHhhHHHHHH
Q psy6102         405 KQMRHHLNLEK  415 (426)
Q Consensus       405 ~~l~~~~~a~k  415 (426)
                      ...++.+++..
T Consensus       314 ~~~g~~~~A~~  324 (411)
T 4a1s_A          314 TLLHEFNTAIE  324 (411)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            88888877754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.06  E-value=2.5e-09  Score=88.00  Aligned_cols=89  Identities=20%  Similarity=0.258  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEI  400 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~---kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---~~a~~~l  400 (426)
                      ..++++|.++++.|+|++|+..++++++.+|++.   .+++.+|.++..+|++++|+..|++++.++|++   ..++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999998   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHHhhHHHHHH
Q psy6102         401 AFVRKQMRHHLNLEK  415 (426)
Q Consensus       401 ~~i~~~l~~~~~a~k  415 (426)
                      +.++..+++.+++..
T Consensus        83 a~~~~~~g~~~~A~~   97 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQ   97 (129)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999999999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.06  E-value=2.3e-09  Score=104.24  Aligned_cols=119  Identities=10%  Similarity=-0.028  Sum_probs=78.5

Q ss_pred             HHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHH----HHc---cCHHHH
Q psy6102         275 VIRTIKNSGNEYFKLN--RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ----LKF---KAYKRA  345 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g--~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~----~~l---g~~~~A  345 (426)
                      ...+|..++..+...+  ++++|+..+.++|..                +|.+..+|..|+.++    ..+   ++++++
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----------------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----------------NEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----------------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----------------CcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            5677888999999888  999999999999997                555555555555555    444   455555


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         346 INLCDDILLMEPNNVKALFRRGRAQVSMNNFE--QGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       346 i~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~--~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      +..++++|+++|.|..+|+.++.++..+++++  +++++++++++++|.|-.++.....+...+++
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            55555555555555555555555555555555  55555555555555555555555555554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.05  E-value=1.6e-09  Score=103.50  Aligned_cols=94  Identities=16%  Similarity=0.046  Sum_probs=89.9

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      |..+..+..+|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHH
Q psy6102         403 VRKQMRHHLNLEKM  416 (426)
Q Consensus       403 i~~~l~~~~~a~k~  416 (426)
                      ++..+++++++...
T Consensus        81 ~~~~~g~~~~A~~~   94 (281)
T 2c2l_A           81 CQLEMESYDEAIAN   94 (281)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHH
Confidence            99999999988763

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=8.3e-10  Score=106.29  Aligned_cols=112  Identities=9%  Similarity=0.099  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHH-HHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Q psy6102         292 MHDAQRKYKKAVR-YIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK-ALFRRGRA  369 (426)
Q Consensus       292 y~~Ai~~y~kAl~-~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~k-al~~lg~a  369 (426)
                      +++|+..|.+|++ +                .|.+..+|.++|.++.++|++++|+..|+++|+++|.++. +|..+|.+
T Consensus        80 ~~~A~~~~~rAl~~~----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  143 (308)
T 2ond_A           80 SDEAANIYERAISTL----------------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF  143 (308)
T ss_dssp             HHHHHHHHHHHHTTT----------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHH
Confidence            5999999999999 6                8999999999999999999999999999999999999987 99999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHh
Q psy6102         370 QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ-MRHHLNLEKMTYAR  420 (426)
Q Consensus       370 ~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~-l~~~~~a~k~~~~k  420 (426)
                      +..+|++++|+..|++|+++.|.+..++.....+... .++.+++. ..|.+
T Consensus       144 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~-~~~~~  194 (308)
T 2ond_A          144 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF-KIFEL  194 (308)
T ss_dssp             HHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH-HHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHH
Confidence            9999999999999999999999988777655555432 45555554 34443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.05  E-value=6e-10  Score=106.39  Aligned_cols=108  Identities=8%  Similarity=0.093  Sum_probs=94.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..|+..|+|++|+.+|.+|++......         ...+....+++++|.+|.++|+|++|+.++++|+
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH---------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS---------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc---------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3566799999999999999999999999999865431         1145667899999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhC
Q psy6102         354 LMEPNN------VKALFRRGRAQVSMNN-FEQGLQDYEQALDLL  390 (426)
Q Consensus       354 ~ldp~~------~kal~~lg~a~~~lg~-~~~Al~~l~kAl~l~  390 (426)
                      ++.+..      +.+|+++|.++..+|+ +++|+++|++|+.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            987544      8999999999999995 699999999999863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.05  E-value=1.1e-09  Score=103.54  Aligned_cols=119  Identities=14%  Similarity=0.161  Sum_probs=106.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch----HHHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY----TAALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~----~~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      .+..+...|..++..|+|++|+..|+++++.                .|.+    ..++..+|.++..+|++++|+..++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   67 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQV----------------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH   67 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3557788999999999999999999999998                5555    5789999999999999999999999


Q ss_pred             HHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhh
Q psy6102         351 DILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRH  409 (426)
Q Consensus       351 ~AL~l------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~~~l~~  409 (426)
                      +++.+      .|....+++.+|.++..+|++++|+..+++++++.|..      ..++..++.++..+++
T Consensus        68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            99988      55668899999999999999999999999999987644      3488889999998888

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.05  E-value=7.2e-10  Score=106.89  Aligned_cols=130  Identities=13%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc-chHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS-YYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p-~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      +..+..+|..+...|+|++|+.+|.+|+++.....           ++ ....++.++|.+|.. |++++|+.+|++|++
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-----------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-----------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            44667788888888888888888888888844322           22 346788999999988 999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHhhHHHHHHHH
Q psy6102         355 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ------QILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       355 ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~------~a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      +.|..      ..++.++|.+|..+|++++|+.+|++++.+.|.+.      .++..++.++..+++..++....
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~  218 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV  218 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            87654      67899999999999999999999999999999885      36667777777788888887743

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.05  E-value=4e-09  Score=90.10  Aligned_cols=92  Identities=17%  Similarity=0.122  Sum_probs=88.3

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      ..+..+..+|.+++..|++++|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHH
Q psy6102         404 RKQMRHHLNLEK  415 (426)
Q Consensus       404 ~~~l~~~~~a~k  415 (426)
                      +..+++.+++..
T Consensus        91 ~~~~~~~~~A~~  102 (166)
T 1a17_A           91 NMALGKFRAALR  102 (166)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHhccHHHHHH
Confidence            999999998875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.04  E-value=7.8e-09  Score=101.45  Aligned_cols=117  Identities=9%  Similarity=0.021  Sum_probs=105.4

Q ss_pred             HHHHHHhccchhhhhhh----------HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC--H
Q psy6102         275 VIRTIKNSGNEYFKLNR----------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--Y  342 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~----------y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~--~  342 (426)
                      ...+|..++..+...+.          +++++..+.+++..                +|.+..+|..|+.++.+++.  +
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----------------~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----------------NPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHhccCcccH
Confidence            44556666666655554          78999999999988                99999999999999999994  9


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNN-FEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       343 ~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~-~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++++..|+++|+++|.|..||..++.++..++. ++++++++.++++.+|.|..++..+..+...+
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999 59999999999999999999999999999887

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.04  E-value=8.3e-10  Score=107.38  Aligned_cols=132  Identities=6%  Similarity=-0.054  Sum_probs=116.0

Q ss_pred             HHHHHHhccchh----hhh---hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHH--HH
Q psy6102         275 VIRTIKNSGNEY----FKL---NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK--RA  345 (426)
Q Consensus       275 ~a~~~~~~G~~~----f~~---g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~--~A  345 (426)
                      ....|..++..+    ...   +++++++..+.++++.                +|.+..+|..|+.+..+++.++  ++
T Consensus       102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----------------~pkny~aW~~R~~vl~~l~~~~~~~E  165 (306)
T 3dra_A          102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----------------DPKNHHVWSYRKWLVDTFDLHNDAKE  165 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred             cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcccChHHH
Confidence            344555566555    444   7899999999999999                9999999999999999999999  99


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         346 INLCDDILLMEPNNVKALFRRGRAQVSMNN------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       346 i~~~~~AL~ldp~~~kal~~lg~a~~~lg~------~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      ++.++++|+++|.|..||..|+.++..+++      ++++++++++++.++|+|..++..+..+....++..++......
T Consensus       166 L~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~  245 (306)
T 3dra_A          166 LSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSL  245 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence            999999999999999999999999999998      99999999999999999999999999999998876555555555


Q ss_pred             hhh
Q psy6102         420 RMF  422 (426)
Q Consensus       420 k~f  422 (426)
                      +++
T Consensus       246 ~~~  248 (306)
T 3dra_A          246 QFV  248 (306)
T ss_dssp             TTE
T ss_pred             HHH
Confidence            544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.04  E-value=1.6e-09  Score=85.53  Aligned_cols=77  Identities=18%  Similarity=0.336  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH--HHHHHHHH
Q psy6102         329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL--KEIAFVRK  405 (426)
Q Consensus       329 ~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~k-al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~--~~l~~i~~  405 (426)
                      .+++|.++++.|++++|+..++++++++|+++. +++.+|.++..+|++++|+++|+++++++|++..++  ..+..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999999887  44444443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.03  E-value=1.8e-09  Score=93.74  Aligned_cols=107  Identities=14%  Similarity=0.218  Sum_probs=95.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHH
Q psy6102         287 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDILLME-P-NNVK  361 (426)
Q Consensus       287 f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~AL~ld-p-~~~k  361 (426)
                      ........+.+.|.+++..                ++.+..+.+++|+|+.+..   +.++++..++.+++.+ | .+.+
T Consensus         9 l~~~~l~~~~~~y~~e~~~----------------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd   72 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAA----------------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD   72 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHT----------------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcc----------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence            3445667778888888776                7889999999999999988   7779999999999999 7 6799


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         362 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       362 al~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      ++|++|.+++.+++|++|+++++++|+++|+|.++......+...+.+
T Consensus        73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888876643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.03  E-value=1.7e-09  Score=102.17  Aligned_cols=132  Identities=13%  Similarity=0.161  Sum_probs=115.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|++++|+.+|.+++++.+....          .+....++.++|.++..+|++++|+..+++++
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD----------KAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999998654321          23446699999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .+.+..      ..+++.+|.++..+|++++|+..|++++.+.|..      ..++..++.++..+++.+++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            987766      8899999999999999999999999999986643      4588899999999999998875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.03  E-value=2.2e-09  Score=87.45  Aligned_cols=92  Identities=10%  Similarity=0.095  Sum_probs=87.1

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-------HHH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-------QQI  396 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n-------~~a  396 (426)
                      ..+..+..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.+.|.+       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999999999887       899


Q ss_pred             HHHHHHHHHHHhhHHHHHH
Q psy6102         397 LKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       397 ~~~l~~i~~~l~~~~~a~k  415 (426)
                      +..++.++..+++.+++..
T Consensus        82 ~~~la~~~~~~~~~~~A~~  100 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIH  100 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHH
Confidence            9999999999999988865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.02  E-value=6.2e-09  Score=97.53  Aligned_cols=120  Identities=15%  Similarity=0.225  Sum_probs=100.6

Q ss_pred             HHhccchhhh----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----ccCHHHHHHHHH
Q psy6102         279 IKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCD  350 (426)
Q Consensus       279 ~~~~G~~~f~----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----lg~~~~Ai~~~~  350 (426)
                      +..+|..+..    .+++++|+.+|++|++.                  .++.+++++|.+|..    .+++++|+.+++
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~  138 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL------------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFT  138 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc------------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence            4556666666    66666666666666654                  368899999999999    999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHHhh
Q psy6102         351 DILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ----MRHHLNLEKMTYARM  421 (426)
Q Consensus       351 ~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~----l~~~~~a~k~~~~k~  421 (426)
                      ++++++  ++.+++++|.+|..    .+++++|+..|++++++  ++..+...++.++..    .++.+++.. .|++.
T Consensus       139 ~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~-~~~~a  212 (273)
T 1ouv_A          139 KACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALA-RYSKA  212 (273)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHH-HHHHH
T ss_pred             HHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHH-HHHHH
Confidence            999986  78999999999999    99999999999999988  568999999999999    888888875 34443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.00  E-value=3.4e-09  Score=106.83  Aligned_cols=165  Identities=13%  Similarity=0.069  Sum_probs=116.4

Q ss_pred             echhhccccHHHHHhhchhhCCcccccchhhhHHHHHHhccchhh--hhhhHHHHHHHHHHHHHHHHhhccc--------
Q psy6102         243 FGCVRQGFGVAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYF--KLNRMHDAQRKYKKAVRYIKWYNQS--------  312 (426)
Q Consensus       243 FG~VieGldvl~~I~~l~~~~~~P~~~i~ilk~a~~~~~~G~~~f--~~g~y~~Ai~~y~kAl~~~~~~~~~--------  312 (426)
                      .|+..+....+++...+......+..    ...+..+..+|..+.  ..++|++|+.+|++|+++.|.....        
T Consensus       107 ~g~~~~A~~~~~ka~~i~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~  182 (472)
T 4g1t_A          107 MGRLSDVQIYVDKVKHVCEKFSSPYR----IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS  182 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCSSC----CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHhHhcccccc----hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34444444445544444332222111    123455666665554  4578999999999999874432211        


Q ss_pred             -------------chhhhhhhcCcchHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy6102         313 -------------QSKTQQKHFRSYYTAALLNMAAVQLKF----KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN  375 (426)
Q Consensus       313 -------------~~~~~~~~~~p~~~~~~~nlA~~~~~l----g~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~  375 (426)
                                   .....+.+++|.+..++.++|.++..+    +++++|++.+++++.++|.+..+++++|.+|..+|+
T Consensus       183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~  262 (472)
T 4g1t_A          183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE  262 (472)
T ss_dssp             HHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence                         113455677899999998888777654    577889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         376 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       376 ~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      +++|+..|++|++++|++..++..++.++.......
T Consensus       263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~  298 (472)
T 4g1t_A          263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV  298 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998887654443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.98  E-value=3.7e-09  Score=109.38  Aligned_cols=136  Identities=14%  Similarity=0.064  Sum_probs=111.0

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      +...+....+.+..+..+|+|++|+..|.++|++....-        -.-.|..+..+.++|.+|..+|+|++|+..+++
T Consensus       305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l--------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~  376 (490)
T 3n71_A          305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVF--------ADTNLYVLRLLSIASEVLSYLQAYEEASHYARR  376 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB--------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344556667777788899999999999999999843211        122567788999999999999999999999999


Q ss_pred             HHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHHhhHHHHHH
Q psy6102         352 ILLM-----EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPNDQ---QILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       352 AL~l-----dp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l-----~P~n~---~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|++     -|++   ...+.++|.+|..+|++++|+..|++|+++     -|+++   ++..++..++..++++++++.
T Consensus       377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~  456 (490)
T 3n71_A          377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF  456 (490)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9976     3455   668999999999999999999999999985     46665   455678888888888888875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.96  E-value=2.9e-09  Score=89.65  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=93.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|++++|+.+|.+++++.+....          .+....++.++|.++..+|++++|+..+++++.
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4678899999999999999999999999998654321          234477899999999999999999999999998


Q ss_pred             hCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy6102         355 MEP------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       355 ldp------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~  392 (426)
                      +.+      ....+++.+|.++..+|++++|+..+++++++...
T Consensus       118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            743      23678999999999999999999999999987544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.95  E-value=2.1e-08  Score=95.49  Aligned_cols=131  Identities=13%  Similarity=0.024  Sum_probs=108.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ....+...+..++..++|++|+..|.++++..+...          ........++.+|.++...|++++|+..+++++.
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  143 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP----------EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH----------HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh----------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            456677889999999999999999999998722100          0123345677899999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQAL---DLLPNDQ----QILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl---~l~P~n~----~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.+..      ..+++.+|.+|..+|++++|+.+|++|+   +..|++.    .++.+++.++..++++++|..
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~  217 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence            76544      6799999999999999999999999999   5567654    688999999999999998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.94  E-value=1.1e-08  Score=107.78  Aligned_cols=106  Identities=10%  Similarity=0.064  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHH
Q psy6102         292 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILLMEPNNVK  361 (426)
Q Consensus       292 y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~----------~~~Ai~~~~~AL~ldp~~~k  361 (426)
                      .++|+..|.++|..                +|.+..+|+.|+.++..+++          +++|++.++++|+.+|++..
T Consensus        45 ~eeal~~~~~~l~~----------------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~  108 (567)
T 1dce_A           45 DESVLELTSQILGA----------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG  108 (567)
T ss_dssp             SHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence            45789999999999                99999999999999999999          99999999999999999999


Q ss_pred             HHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh-hHHHH
Q psy6102         362 ALFRRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR-HHLNL  413 (426)
Q Consensus       362 al~~lg~a~~~lg--~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~-~~~~a  413 (426)
                      +|+.|+.++..++  ++++|+++++++++++|.|..+|...+.+...++ ..+++
T Consensus       109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~e  163 (567)
T 1dce_A          109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE  163 (567)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHH
Confidence            9999999999999  6699999999999999999999999999999998 55444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.93  E-value=3.3e-09  Score=96.71  Aligned_cols=130  Identities=13%  Similarity=0.000  Sum_probs=90.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhh----------cccc--h-------hhhhhhcCcchHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY----------NQSQ--S-------KTQQKHFRSYYTAALLNMAAV  335 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~----------~~~~--~-------~~~~~~~~p~~~~~~~nlA~~  335 (426)
                      .+..++.+|..++..+++++|+.+|++|++.-...          ....  +       .+..  .++.++.+++++|.+
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A--~~~g~~~a~~~Lg~~   94 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKA--VEAGSKSGEIVLARV   94 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHH
Confidence            34556666666666666666666666666531000          0000  0       0111  245677888888888


Q ss_pred             HHH----ccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         336 QLK----FKAYKRAINLCDDILLMEP--NNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       336 ~~~----lg~~~~Ai~~~~~AL~ldp--~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      |..    .+++++|+.++++++++.|  .++.+++++|.+|..    .+++++|+..|++|+++ |.++.+...++.++.
T Consensus        95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            887    7888888888888888887  458888888888888    78888888888888888 778888888888877


Q ss_pred             HH
Q psy6102         406 QM  407 (426)
Q Consensus       406 ~l  407 (426)
                      .-
T Consensus       174 ~g  175 (212)
T 3rjv_A          174 QG  175 (212)
T ss_dssp             HC
T ss_pred             cC
Confidence            64

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.93  E-value=1.4e-09  Score=95.80  Aligned_cols=114  Identities=9%  Similarity=-0.088  Sum_probs=92.4

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH---------------hhcc---cchhhhhhhcCcchHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK---------------WYNQ---SQSKTQQKHFRSYYTAALLNMAAVQ  336 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~---------------~~~~---~~~~~~~~~~~p~~~~~~~nlA~~~  336 (426)
                      .+..+..+|..+...|++++|+..|++++...+               ....   ....+.....+|.+..+++++|.++
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~  118 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQY  118 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            456778888888888888888888877755422               0000   0112344556899999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNN--VKALFRRGRAQVSMNNFEQGLQDYEQALD  388 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~--~kal~~lg~a~~~lg~~~~Al~~l~kAl~  388 (426)
                      ..+|++++|+..++++++++|++  ..+++.+|.++..+|+.++|+..|++++.
T Consensus       119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999976  66999999999999999999999999975

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.93  E-value=4.2e-09  Score=96.03  Aligned_cols=107  Identities=9%  Similarity=-0.073  Sum_probs=85.7

Q ss_pred             HHhccchhhh----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc--chHHHHHHHHHHHHH----ccCHHHHHHH
Q psy6102         279 IKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS--YYTAALLNMAAVQLK----FKAYKRAINL  348 (426)
Q Consensus       279 ~~~~G~~~f~----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p--~~~~~~~nlA~~~~~----lg~~~~Ai~~  348 (426)
                      +..+|..|+.    .+++++|+.+|.+|++.                .+  .++.+++++|.+|..    .+++++|+.+
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----------------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARD----------------SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----------------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----------------CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            4455555555    55666666666666554                66  459999999999999    8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         349 CDDILLMEPNNVKALFRRGRAQVSM-N-----NFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       349 ~~~AL~ldp~~~kal~~lg~a~~~l-g-----~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      +++|+++ |.++.+++++|.+|... |     ++++|+..|++|++.  .+..+...+..+.
T Consensus       152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~  210 (212)
T 3rjv_A          152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRIS  210 (212)
T ss_dssp             HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence            9999999 77888999999999864 3     999999999999998  5677777776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.92  E-value=5.5e-10  Score=109.75  Aligned_cols=103  Identities=10%  Similarity=0.027  Sum_probs=60.2

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+.++|..+++.++|++|+.+|++||++                +|.+..+|+++|.+|+.+|++++|+.+|+++++++
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTE----------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            37889999999999999999999999999                99999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCcHH
Q psy6102         357 PNNVKALFRRGRA-QVSMNNFEQGLQDYEQALDLLPNDQQ  395 (426)
Q Consensus       357 p~~~kal~~lg~a-~~~lg~~~~Al~~l~kAl~l~P~n~~  395 (426)
                      |++..++..++.+ ....+..+++...|.+++...|+++.
T Consensus       295 p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          295 PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ----------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999999999999 45567888999999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.91  E-value=5e-10  Score=115.44  Aligned_cols=103  Identities=14%  Similarity=0.210  Sum_probs=92.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..+++.|+|++|+..|++|+++                +|.++.+++++|.+|.++|++++|+++++++++
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~  102 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIEL----------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVK  102 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHH--HHHcCChHHHHHHHH-----------HHHHhCCCc
Q psy6102         355 MEPNNVKALFRRGRA--QVSMNNFEQGLQDYE-----------QALDLLPND  393 (426)
Q Consensus       355 ldp~~~kal~~lg~a--~~~lg~~~~Al~~l~-----------kAl~l~P~n  393 (426)
                      ++|++..++..++.+  +..+|++++|++.++           +++.++|+.
T Consensus       103 ~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          103 VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999  888999999999999           888888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.90  E-value=2.1e-08  Score=98.43  Aligned_cols=119  Identities=11%  Similarity=-0.030  Sum_probs=108.2

Q ss_pred             hhHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC-HHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLN--RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-YKRAINLC  349 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g--~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~-~~~Ai~~~  349 (426)
                      ++....|..++..+...+  +|++++.++.++++.                +|.+..+|..++.+...++. ++++++++
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~----------------dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----------------DERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            346778888888888888  499999999999999                99999999999999999999 69999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSM--------------NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~l--------------g~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      +++|+++|.|..||..++.++..+              +.++++++++.+++.++|+|..++..+..+....
T Consensus       169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999888              5689999999999999999999998777666544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.89  E-value=2.3e-08  Score=98.72  Aligned_cols=114  Identities=7%  Similarity=-0.022  Sum_probs=104.1

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCH
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNV  360 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~ldp~~~  360 (426)
                      ........+..++|+.++.++|.+                +|.+..+|+.|+.++..++ .+++++..++.+|..+|++.
T Consensus        60 ~r~~~~~~e~se~AL~lt~~~L~~----------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny  123 (349)
T 3q7a_A           60 FRAIAAKEEKSERALELTEIIVRM----------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY  123 (349)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence            333444445567899999999999                9999999999999999999 59999999999999999999


Q ss_pred             HHHHHHHHHHHHc-C-ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         361 KALFRRGRAQVSM-N-NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       361 kal~~lg~a~~~l-g-~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      .+|+.|+.++..+ + +++++++++.++++++|.|..++...+.+...++...
T Consensus       124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            9999999999998 8 9999999999999999999999999999999888765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.88  E-value=6.4e-09  Score=85.18  Aligned_cols=85  Identities=13%  Similarity=0.123  Sum_probs=75.5

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..++..|+|++|+..|.+++++                .|.+..+++++|.++.++|++++|+..+++++
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ----------------FPNHQALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcC
Q psy6102         354 LMEPNNVKALFRRGRAQVSMN  374 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg  374 (426)
                      .+.|+++.+......+....+
T Consensus        89 ~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           89 AETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHCCCHHHHHTHHHHHHHTT
T ss_pred             HhCCCcHHHHHHHHHHHHHHH
Confidence            999999887654444433333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.88  E-value=9.5e-09  Score=101.43  Aligned_cols=119  Identities=10%  Similarity=-0.027  Sum_probs=111.7

Q ss_pred             HHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc-c-CHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-K-AYKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l-g-~~~~Ai~~~~~  351 (426)
                      ....|..++..+...+ .+++++..+.++|..                +|.+..+|..|+.++.++ + +++++++.+++
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----------------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k  150 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----------------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG  150 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----------------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4567888888888888 599999999999998                999999999999999998 8 99999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNNFE--------QGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~~~--------~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      +|+++|.|..+|+.|+.++..++.++        +++++++++++++|.|..++.....+...+++
T Consensus       151 ~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          151 SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            99999999999999999999999998        99999999999999999999999999888765

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.85  E-value=2.4e-08  Score=80.83  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=75.7

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  396 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld-------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a  396 (426)
                      ..+.-++.+|..+++.++|..|+.++++|++..       +....++..+|.|+..+|+++.|+..+++|++++|++..+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            356778999999999999999999999999863       3568899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy6102         397 LKEIAFVRKQMR  408 (426)
Q Consensus       397 ~~~l~~i~~~l~  408 (426)
                      ..++..+...+.
T Consensus        83 ~~n~~~~~~~~~   94 (104)
T 2v5f_A           83 NGNLKYFEYIMA   94 (104)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHH
Confidence            888886655543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.82  E-value=1.6e-08  Score=100.65  Aligned_cols=92  Identities=15%  Similarity=0.250  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILL----------------MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  388 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~----------------ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~  388 (426)
                      .+..+.++|.++++.|+|++|+..|++||+                ++|.+..+|+++|.+|..+|++++|+++|++|++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            366799999999999999999999999999                8888999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         389 LLPNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       389 l~P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ++|++..++..++.++..++++++|...
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~  329 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALAD  329 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999999999999999999988753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.80  E-value=3.2e-08  Score=78.77  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             CcchHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKA---YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  396 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~---~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a  396 (426)
                      +|.++.++..+|.+++..++   ..+|...+++||++||+++.+++.+|.+++..|+|++|+..|+++++.+|.++..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            68899999999999987766   7999999999999999999999999999999999999999999999999985443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.80  E-value=1e-08  Score=98.18  Aligned_cols=124  Identities=13%  Similarity=-0.026  Sum_probs=87.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .-......+..+...|+|++|...|..++..                .|.+. +.+.+|.++++.++|++|+..++.++.
T Consensus       101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----------------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~  163 (282)
T 4f3v_A          101 PLAITMGFAACEAAQGNYADAMEALEAAPVA----------------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK  163 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----------------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred             HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence            3455666777788888888888888777665                66666 777777777777777777777776665


Q ss_pred             hCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNN--VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PN-DQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~--~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~--P~-n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ..+..  ..+++.+|.++..+|++++|+..|++++.-.  |. ...++..++.++..+|+.+++..
T Consensus       164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~  229 (282)
T 4f3v_A          164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA  229 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            53221  3477777777777777777777777776543  44 55677777777777777776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.79  E-value=1.7e-08  Score=96.63  Aligned_cols=109  Identities=12%  Similarity=0.012  Sum_probs=94.9

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+.+|..+++.++|++|+.+|++++..-               +|.. ..+++++|.++.++|++++|+.+|++++.-.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP---------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC---------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            77899999999999999999998776540               2222 4589999999999999999999999999655


Q ss_pred             --CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         357 --PN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       357 --p~-~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                        |. .+++++++|.|+..+|+.++|...|++++..+|+ ..+...|..
T Consensus       202 ~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence              65 7789999999999999999999999999999999 887776643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.79  E-value=3.4e-08  Score=102.15  Aligned_cols=132  Identities=5%  Similarity=-0.021  Sum_probs=102.4

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchH-HHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT-AALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~-~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      +.+..|...|..+.+.|++++|+..|.+++++                .|.+. .+|.+++.++.+.|++++|+..+++|
T Consensus       319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc----------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35677888899999999999999999999987                66664 57888888888888888888888888


Q ss_pred             HHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         353 LLMEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a-~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      ++..|.....+...+.+ +..+|++++|+..|+++++..|++..++..+..++...++.+++. ..|++.+
T Consensus       383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al  452 (530)
T 2ooe_A          383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR-VLFERVL  452 (530)
T ss_dssp             HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHH
T ss_pred             HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHH
Confidence            88888777777766655 345788888888888888888888888888887777777666543 3555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=4e-08  Score=86.87  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCC
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL------MEPNN  359 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~------ldp~~  359 (426)
                      ++..|+|++|...++.....                .+....++.++|.++..+|++++|+..+++++.      ..+..
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   65 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAH----------------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE   65 (203)
T ss_dssp             -----CHHHHHHHHHHHHTS----------------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             ccccccHHHHHHHHHHhcCC----------------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            46788999999855443221                346789999999999999999999999999998      45566


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCc----HHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         360 VKALFRRGRAQVSMNNFEQGLQDYEQALDL---LPND----QQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       360 ~kal~~lg~a~~~lg~~~~Al~~l~kAl~l---~P~n----~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ..+++++|.++..+|++++|+..+++++.+   .+++    ..++..++.++..+++.+++...
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  129 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE  129 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            889999999999999999999999999998   4433    46788999999999999888653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.78  E-value=2.1e-08  Score=87.71  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=68.0

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         337 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF----------EQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       337 ~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~----------~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      .+++.|++|++.++++++++|+++++|+++|.++..++++          ++|+..|++|++++|++..++..++.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             Hh
Q psy6102         407 MR  408 (426)
Q Consensus       407 l~  408 (426)
                      ++
T Consensus        93 lg   94 (158)
T 1zu2_A           93 FA   94 (158)
T ss_dssp             HH
T ss_pred             hc
Confidence            85

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.76  E-value=1.8e-08  Score=80.51  Aligned_cols=83  Identities=13%  Similarity=0.098  Sum_probs=71.5

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..++.+|..++..|+|++|+..|++++++                +|.+..+|+++|.++.++|++++|+..+++++
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVET----------------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCC--CHHHHHHHHHHHHH
Q psy6102         354 LMEPN--NVKALFRRGRAQVS  372 (426)
Q Consensus       354 ~ldp~--~~kal~~lg~a~~~  372 (426)
                      ++.|.  +..+...+..++..
T Consensus        69 ~l~~~~~~~~~~~~l~~~l~~   89 (100)
T 3ma5_A           69 EVAREEGTQKDLSELQDAKLK   89 (100)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHH
T ss_pred             hhhhcCCchhHHHHHHHHHHH
Confidence            98763  34444444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.76  E-value=9.6e-08  Score=93.40  Aligned_cols=131  Identities=8%  Similarity=0.022  Sum_probs=99.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|++++|+..|.+++.+.+....          ......++.++|.++...|++++|+..++++++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  121 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ  121 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4456778888888899999999999999887543221          112345678888888889999999998888887


Q ss_pred             hC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 ME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-----QQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ld--------p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n-----~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.        |....++..+|.++..+|++++|...+++++.+.|..     ..++..++.++...++.+++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  195 (373)
T 1hz4_A          122 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS  195 (373)
T ss_dssp             HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            75        3346677888888888899999999998888887652     3567778888888888877654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.74  E-value=8.3e-08  Score=91.63  Aligned_cols=97  Identities=13%  Similarity=0.130  Sum_probs=86.5

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-------------------
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD-------------------  382 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~-------------------  382 (426)
                      .|.....+..+|..+++.|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..                   
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            4778899999999999999999999999999999999999999999999999999887644                   


Q ss_pred             ---------------HHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102         383 ---------------YEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY  418 (426)
Q Consensus       383 ---------------l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~  418 (426)
                                     |++++.++|++..++..++.++...++.+++....-
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~  243 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF  243 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                           555577889999999999999999999988876433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.71  E-value=9.1e-08  Score=77.34  Aligned_cols=85  Identities=11%  Similarity=0.021  Sum_probs=74.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++.+|..+|+.++|..|+..|.+|++..+...         ........++.++|.|+.++|+++.|+..++++++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~---------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE---------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC---------CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            356789999999999999999999999999853221         11356789999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGR  368 (426)
Q Consensus       355 ldp~~~kal~~lg~  368 (426)
                      ++|++..++.+++.
T Consensus        75 l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           75 LDPEHQRANGNLKY   88 (104)
T ss_dssp             HCTTCHHHHHHHHH
T ss_pred             cCCCCHHHHhhHHH
Confidence            99999999888873

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.69  E-value=1.2e-07  Score=96.50  Aligned_cols=120  Identities=10%  Similarity=0.084  Sum_probs=94.9

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +....+.+......|+|++|+..|.++|++....-        -...|.-+..+.++|.+|..+|+|++|+..++++|++
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~l--------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i  369 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVF--------EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP  369 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTB--------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCcc--------ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            33444455555567899999999999999743211        1225667789999999999999999999999999976


Q ss_pred             -----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Q psy6102         356 -----EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPNDQQILKEIAFV  403 (426)
Q Consensus       356 -----dp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l-----~P~n~~a~~~l~~i  403 (426)
                           -|++   ...++++|.+|..+|++++|+..|++|+++     -|+++.+......+
T Consensus       370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence                 3444   667999999999999999999999999985     58888776654443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.65  E-value=2.4e-07  Score=75.09  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       344 ~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            588999999999999999999999999999999999999999999999999999999999999999988765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.63  E-value=1.3e-07  Score=97.81  Aligned_cols=129  Identities=9%  Similarity=0.061  Sum_probs=107.1

Q ss_pred             HHHHHHhccchhhh-------hhhHH-------HHHHHHHHHHH-HHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc
Q psy6102         275 VIRTIKNSGNEYFK-------LNRMH-------DAQRKYKKAVR-YIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF  339 (426)
Q Consensus       275 ~a~~~~~~G~~~f~-------~g~y~-------~Ai~~y~kAl~-~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l  339 (426)
                      .+..|...|..+.+       .|+++       +|+..|.+|++ +                .|.+..+|..+|.++.++
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~----------------~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----------------LKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----------------CSSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHhc
Confidence            46778888888876       68877       89999999997 6                799999999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHhhHHHHHHHH
Q psy6102         340 KAYKRAINLCDDILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR-KQMRHHLNLEKMT  417 (426)
Q Consensus       340 g~~~~Ai~~~~~AL~ldp~~~-kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~-~~l~~~~~a~k~~  417 (426)
                      |++++|+..|+++++++|.++ .+|..+|.++..+|++++|++.|++|++..|.+..+......+. ...++.+++. ..
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~-~~  413 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF-KI  413 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHH-HH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHH-HH
Confidence            999999999999999999985 69999999999999999999999999999998766665544443 2345554443 34


Q ss_pred             HHh
Q psy6102         418 YAR  420 (426)
Q Consensus       418 ~~k  420 (426)
                      |.+
T Consensus       414 ~e~  416 (530)
T 2ooe_A          414 FEL  416 (530)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.62  E-value=1e-07  Score=96.99  Aligned_cols=117  Identities=10%  Similarity=0.045  Sum_probs=93.3

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +.........+..+|+|++|+..|+++++.....        .....|....++.++|.+|..+|+|++|+..++++|++
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~--------lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i  358 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSER--------LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP  358 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCC--------CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCc--------CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            4445555566778899999999999999862111        11125677889999999999999999999999999976


Q ss_pred             -----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCcHHHHHHH
Q psy6102         356 -----EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPNDQQILKEI  400 (426)
Q Consensus       356 -----dp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l-----~P~n~~a~~~l  400 (426)
                           -|++   ...++++|.+|..+|++++|+..|++|+++     -|+++.+...+
T Consensus       359 ~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          359 YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence                 3444   667999999999999999999999999985     57777665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.62  E-value=3.7e-07  Score=77.56  Aligned_cols=98  Identities=12%  Similarity=0.043  Sum_probs=85.7

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----lg~~~~Ai~~~~~AL~ldp  357 (426)
                      +|..|...+.+++|+.+|++|.+.                  .++.+++++|.+|..    .+++++|+.++++|.+.  
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL------------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC------------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--
Confidence            888888888889999999999875                  467899999999999    89999999999999987  


Q ss_pred             CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         358 NNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       358 ~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      .++.+++++|.+|..    .+++++|+..|++|.++  .++.+...++
T Consensus        91 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A           91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence            789999999999999    99999999999999988  5566655544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.56  E-value=6.4e-07  Score=74.99  Aligned_cols=104  Identities=13%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHH
Q psy6102         290 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR---AINLCDDILLME-P-NNVKALF  364 (426)
Q Consensus       290 g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~---Ai~~~~~AL~ld-p-~~~kal~  364 (426)
                      .....+...|.+++..                .+....+.+++|+++.+......   +|..+...++-+ | ..-+.+|
T Consensus        15 ~~l~~~~~~y~~e~~~----------------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY   78 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAA----------------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   78 (126)
T ss_dssp             HHHHHHHHHHHHHHHH----------------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc----------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3455666677777665                67889999999999999988777   999999999887 5 6789999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         365 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       365 ~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      .+|..++.+|+|++|+.+++.+|+++|+|.++......+...+.+
T Consensus        79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999888876543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.54  E-value=3.7e-07  Score=89.22  Aligned_cols=131  Identities=12%  Similarity=0.005  Sum_probs=107.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+...|..++..|++++|+..+.+++...+...           ......++.++|.++...|++++|+..+.+++.
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   81 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   81 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-----------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            456677889999999999999999999998732100           012345789999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         355 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--------PNDQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       355 ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~--------P~n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      +.|..      ..+++.+|.++..+|++++|+..|++++.+.        |....+...++.++...++.+++...
T Consensus        82 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  157 (373)
T 1hz4_A           82 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS  157 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            86543      3457899999999999999999999999985        34456778899999999999888754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.52  E-value=8e-07  Score=90.82  Aligned_cols=81  Identities=14%  Similarity=-0.031  Sum_probs=71.6

Q ss_pred             chHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC---
Q psy6102         324 YYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPN---  392 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~----lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~---  392 (426)
                      .++.+++++|.+|..    .+++++|+.++++|++..  ++.+++++|.+|..    .+++++|+..|++|++.+|+   
T Consensus       361 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  438 (490)
T 2xm6_A          361 GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG  438 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence            568899999999999    899999999999999864  79999999999998    89999999999999999954   


Q ss_pred             cHHHHHHHHHHHHH
Q psy6102         393 DQQILKEIAFVRKQ  406 (426)
Q Consensus       393 n~~a~~~l~~i~~~  406 (426)
                      ++.+...++.+...
T Consensus       439 ~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          439 TENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHHHTTSCHH
T ss_pred             CHHHHHHHHhcCHh
Confidence            88888888777654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=1.5e-06  Score=73.73  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=90.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102         289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  368 (426)
Q Consensus       289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~  368 (426)
                      .+++++|+..|++|.+.                ..  +.++  +|.+|...+.+++|++++++|.+.  .++.+++++|.
T Consensus         8 ~~d~~~A~~~~~~aa~~----------------g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~   65 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL----------------NE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT----------------TC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcC----------------CC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence            57899999999999987                32  2333  999999999999999999999987  78999999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HhhHHHHHH
Q psy6102         369 AQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ----MRHHLNLEK  415 (426)
Q Consensus       369 a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~----l~~~~~a~k  415 (426)
                      +|..    .+++++|+..|++|.+.  .++.+...++.++..    .++.+++.+
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~  118 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVK  118 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence            9999    89999999999999987  789999999999988    666666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.50  E-value=2.2e-06  Score=87.60  Aligned_cols=78  Identities=14%  Similarity=-0.009  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHH
Q psy6102         325 YTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQI  396 (426)
Q Consensus       325 ~~~~~~nlA~~~~~----lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a  396 (426)
                      ++.+++++|.+|..    .+++++|+++++++++.  .++.+++.+|.+|..    .+++++|+..|+++++.  .++.+
T Consensus       146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  221 (490)
T 2xm6_A          146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELG  221 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence            45566666666665    55666666666666554  356666666666665    56666666666666554  34556


Q ss_pred             HHHHHHHHHH
Q psy6102         397 LKEIAFVRKQ  406 (426)
Q Consensus       397 ~~~l~~i~~~  406 (426)
                      ...++.++..
T Consensus       222 ~~~lg~~y~~  231 (490)
T 2xm6_A          222 QLHLADMYYF  231 (490)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            6666666554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.43  E-value=8.3e-07  Score=88.17  Aligned_cols=132  Identities=11%  Similarity=0.072  Sum_probs=102.5

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM-  355 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l-  355 (426)
                      .....+|..+...+++++|+..|.+++........          .+....++.++|.++..+|+|.+|+..+++++.. 
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR----------VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC----------CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc----------cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            34556777778888888888888888887543322          5667889999999999999999999999999876 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CcH----HHHHHHHHHHHHHhhHHHHHHHHH
Q psy6102         356 -----EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP---NDQ----QILKEIAFVRKQMRHHLNLEKMTY  418 (426)
Q Consensus       356 -----dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P---~n~----~a~~~l~~i~~~l~~~~~a~k~~~  418 (426)
                           .+...+++..+|.+|..+|++++|...|++++.+.+   ...    .+...++.++...+++.++.+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~  240 (434)
T 4b4t_Q          166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF  240 (434)
T ss_dssp             TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                 344578999999999999999999999999998743   222    344555666666677777765433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.42  E-value=1.3e-06  Score=88.95  Aligned_cols=120  Identities=10%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             HHHhccchhhhhh---hHHHHHHHHHHHHHHHHhhcc-----------c----ch-------hhhhhhcCcchHHHHHHH
Q psy6102         278 TIKNSGNEYFKLN---RMHDAQRKYKKAVRYIKWYNQ-----------S----QS-------KTQQKHFRSYYTAALLNM  332 (426)
Q Consensus       278 ~~~~~G~~~f~~g---~y~~Ai~~y~kAl~~~~~~~~-----------~----~~-------~~~~~~~~p~~~~~~~nl  332 (426)
                      .++.+|..+...|   ++++|+..|.+|++.-+....           .    .+       .+..  . |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a--a-~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI--A-PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH--G-GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH--c-CCCHHHHHHH
Confidence            6788999999999   999999999999886211111           0    00       0111  1 5566666666


Q ss_pred             HHH-H--HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         333 AAV-Q--LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-----NFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       333 A~~-~--~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg-----~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      |.+ +  ...+++++|+.+|+++++..  ++.+++++|.+|. .|     ++++|+..|++|.   |.++.+...++.++
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y  328 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence            666 3  34566666666666666443  6666666666665 33     6666666666666   66666666666665


Q ss_pred             HH
Q psy6102         405 KQ  406 (426)
Q Consensus       405 ~~  406 (426)
                      ..
T Consensus       329 ~~  330 (452)
T 3e4b_A          329 RR  330 (452)
T ss_dssp             HT
T ss_pred             HC
Confidence            54

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.34  E-value=4.7e-06  Score=82.42  Aligned_cols=119  Identities=10%  Similarity=0.019  Sum_probs=79.4

Q ss_pred             HHHHHHhccchhhh---hhhHHHHHHHHHHHHHHHHhhcccch----------------------------hhhhhhcCc
Q psy6102         275 VIRTIKNSGNEYFK---LNRMHDAQRKYKKAVRYIKWYNQSQS----------------------------KTQQKHFRS  323 (426)
Q Consensus       275 ~a~~~~~~G~~~f~---~g~y~~Ai~~y~kAl~~~~~~~~~~~----------------------------~~~~~~~~p  323 (426)
                      .+..++-+|..++.   ..++.+|+.+|++|+++-|.+.....                            ........|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            34555666666654   45679999999999998443222100                            001224456


Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      ..+.++.-+|.+++..|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|..+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            66667777777777677777777777777777753 56677777777777777777777777777777665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.30  E-value=2.2e-06  Score=85.04  Aligned_cols=132  Identities=8%  Similarity=0.088  Sum_probs=108.5

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .....+..+|..|+..|+|++|+.+|.+++...+....          ......++.+++.++...+++++|+..+++++
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  122 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK----------SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSI  122 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH----------HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc----------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34567889999999999999999999999998544321          11234567788899989999999999999999


Q ss_pred             HhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         354 LMEP------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDL------LPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       354 ~ldp------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l------~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      .+.+      ....++.++|.++..+|+|++|+..+++++..      .|....+...+..++..++++.++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  196 (434)
T 4b4t_Q          123 EFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKA  196 (434)
T ss_dssp             HHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence            7643      34789999999999999999999999999886      23346788899999999999887764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.23  E-value=1.1e-05  Score=78.17  Aligned_cols=124  Identities=12%  Similarity=0.077  Sum_probs=101.4

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS--YYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p--~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      ..+...|..+...|++++|++.+.++|..                .|  .+..++..++.+++++|+.+.|.+.+++..+
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~----------------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDN----------------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTS----------------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----------------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34568899999999999999999999876                55  8999999999999999999999999999999


Q ss_pred             hCCC----CHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102         355 MEPN----NVKALFRR--GRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       355 ldp~----~~kal~~l--g~a~~~lg--~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      .+|+    +-..+..+  |.+.+..|  ++.+|...|+++....|+.......+. ++..+++.+++++.+
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L  234 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIV  234 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHH
Confidence            9994    33444444  44466666  999999999999888887333333333 889999999998754

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.23  E-value=8.9e-06  Score=77.62  Aligned_cols=91  Identities=12%  Similarity=0.018  Sum_probs=82.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCC
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKF-----KAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~l-----g~~~~Ai~~~~~AL~ldp~  358 (426)
                      .-..+....|...+++||++                +|.  +..+|..+|..|.+.     |+.++|.+.+++||+++|+
T Consensus       173 ~~Al~~l~~A~a~lerAleL----------------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~  236 (301)
T 3u64_A          173 SALPDTVHAAVMMLERACDL----------------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA  236 (301)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH----------------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT
T ss_pred             hHHHHhHHHHHHHHHHHHHh----------------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC
Confidence            44566788999999999999                898  677999999999996     9999999999999999997


Q ss_pred             C-HHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Q psy6102         359 N-VKALFRRGRAQVS-MNNFEQGLQDYEQALDLLPN  392 (426)
Q Consensus       359 ~-~kal~~lg~a~~~-lg~~~~Al~~l~kAl~l~P~  392 (426)
                      . ..+++..|..+.. ++++++|.+.+++|+..+|.
T Consensus       237 ~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          237 HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            5 9999999999988 59999999999999998876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.23  E-value=2.1e-06  Score=88.61  Aligned_cols=116  Identities=12%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+.++|..|..+|+|++|+.+|.++|++....-        -.-.|.-+..+.|+|.+|..+|+|++|+..|++||
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY--------HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4778899999999999999999999999999843221        12267788899999999999999999999999999


Q ss_pred             Hh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         354 LM-----EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       354 ~l-----dp~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      ++     -|++   .+.+-.+++++..++.|.+|...|+++.+-.-+|..++
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~  472 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ  472 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            75     4665   55678899999999999999999999976543444333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.22  E-value=2.3e-05  Score=74.77  Aligned_cols=149  Identities=9%  Similarity=-0.004  Sum_probs=108.9

Q ss_pred             cchhhhHHHHHHhccchhhhhh--------------hHHHHHHHHHHHHHHHHhhccc---------------chhhhhh
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLN--------------RMHDAQRKYKKAVRYIKWYNQS---------------QSKTQQK  319 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g--------------~y~~Ai~~y~kAl~~~~~~~~~---------------~~~~~~~  319 (426)
                      .......+..|...++.+.+..              ++..|...|.++.++.-..-..               .-.....
T Consensus        66 ~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~  145 (301)
T 3u64_A           66 RGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLS  145 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHH
Confidence            3334445555666666555542              5667777777777653211111               0124455


Q ss_pred             hcCcchHHHHHHHHHHHHH-----------ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHH
Q psy6102         320 HFRSYYTAALLNMAAVQLK-----------FKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSM-----NNFEQGLQ  381 (426)
Q Consensus       320 ~~~p~~~~~~~nlA~~~~~-----------lg~~~~Ai~~~~~AL~ldp~--~~kal~~lg~a~~~l-----g~~~~Al~  381 (426)
                      ..+|.++.+++..|..+..           ++...+|...+++||++||+  +..+|..+|..|..+     |+.++|.+
T Consensus       146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            6789999999999888754           12467899999999999999  677999999999996     99999999


Q ss_pred             HHHHHHHhCCCc-HHHHHHHHHHHHHH-hhHHHHHHHH
Q psy6102         382 DYEQALDLLPND-QQILKEIAFVRKQM-RHHLNLEKMT  417 (426)
Q Consensus       382 ~l~kAl~l~P~n-~~a~~~l~~i~~~l-~~~~~a~k~~  417 (426)
                      +|++|++++|+. ..+....+..+... ++++++.+.+
T Consensus       226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L  263 (301)
T 3u64_A          226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEAL  263 (301)
T ss_dssp             HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999999975 99999999988774 6666665543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.14  E-value=1.2e-05  Score=77.94  Aligned_cols=102  Identities=13%  Similarity=-0.018  Sum_probs=83.2

Q ss_pred             HHHhccchhhhhh--hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcc--hHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         278 TIKNSGNEYFKLN--RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       278 ~~~~~G~~~f~~g--~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~--~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .....|.+.+..|  ++.+|...|+++.+.                .|.  ...++++   |++++|++++|...++.++
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~----------------~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQT----------------FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----------------SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHh----------------CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence            3444454444445  899999999998765                555  3455565   8999999999999999888


Q ss_pred             Hh----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         354 LM----------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       354 ~l----------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      ++          +|+++.++.++..+...+|+  +|.+.++++.+++|+++.+....
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~  293 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ  293 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence            77          59999999999999999998  89999999999999999776543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.07  E-value=5.4e-05  Score=63.58  Aligned_cols=89  Identities=10%  Similarity=0.105  Sum_probs=78.7

Q ss_pred             CcchHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAY---KRAINLCDDILLMEP-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~---~~Ai~~~~~AL~ldp-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      ..-.+...+++|+|+.+..+.   .++|..++..++.+| ..-+.+|.+|..++.+|+|++|+.+.+.+|+++|+|.++.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            445678899999999988755   578999999999998 4588999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhH
Q psy6102         398 KEIAFVRKQMRHH  410 (426)
Q Consensus       398 ~~l~~i~~~l~~~  410 (426)
                      .....+...+.+.
T Consensus       116 ~Lk~~Ie~ki~kd  128 (134)
T 3o48_A          116 ALKSMVEDKIQKE  128 (134)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999988877653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.04  E-value=1.7e-05  Score=80.62  Aligned_cols=109  Identities=7%  Similarity=-0.049  Sum_probs=63.5

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc---CHHHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDIL  353 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg---~~~~Ai~~~~~AL  353 (426)
                      ..++.+|..+...+.+++++.......+..               ...++.+++++|.+|.+.|   ++++|+.+|++++
T Consensus       142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a---------------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa  206 (452)
T 3e4b_A          142 EAGLAQVLLYRTQGTYDQHLDDVERICKAA---------------LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV  206 (452)
T ss_dssp             THHHHHHHHHHHHTCGGGGHHHHHHHHHHH---------------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccCHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence            456677777777775444444322221111               1122226666666666666   6666666666666


Q ss_pred             HhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSM----NNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~l----g~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      +..|....+++++|.+|...    +++++|+..|+++.   |+++.++..++.+
T Consensus       207 ~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          207 SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQL  257 (452)
T ss_dssp             HTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            66666666666666666544    56666666666665   6666666666665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.04  E-value=2.3e-05  Score=67.80  Aligned_cols=79  Identities=13%  Similarity=0.082  Sum_probs=68.6

Q ss_pred             HHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHhhcccchhhhhhhcC-c-chHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLN---RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFR-S-YYTAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g---~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-p-~~~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      ..+..++.|..+.+.+   +.++++..+++.++.                + | ...++++++|..++++++|++|++++
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----------------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----------------GSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----------------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----------------CCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            4466778888888877   888999999999987                5 6 67899999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH
Q psy6102         350 DDILLMEPNNVKALFRRGRA  369 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a  369 (426)
                      +++|+++|+|..|..-+-.+
T Consensus        95 ~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           95 RGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHH
Confidence            99999999999887665544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.02  E-value=6.2e-05  Score=63.98  Aligned_cols=86  Identities=10%  Similarity=0.108  Sum_probs=77.0

Q ss_pred             cchHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAY---KRAINLCDDILLMEP-NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~---~~Ai~~~~~AL~ldp-~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      .......+++|+|+.+....   .++|..++..++-+| ..-+.+|.+|..++++|+|++|+.+.+.+|+++|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            56688999999999998765   478999999999888 56889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy6102         399 EIAFVRKQMR  408 (426)
Q Consensus       399 ~l~~i~~~l~  408 (426)
                      ....+...+.
T Consensus       116 Lk~~Ie~~i~  125 (144)
T 1y8m_A          116 LKSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888877654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.99  E-value=3.7e-05  Score=86.98  Aligned_cols=126  Identities=13%  Similarity=0.046  Sum_probs=93.2

Q ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHhhccc----chhhhhhh--cCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS----QSKTQQKH--FRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       280 ~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~----~~~~~~~~--~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      .+.|..+...|.|++|...|+++-.........    ...+.+.+  .....+.+|+++|.++...|++++|+..|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            346999999999999999998876432211111    11222221  13577899999999999999999999999776 


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                          +++.+|++.|.++..+|+|++|+++|+.|++..++. .+...++.++.++++.+
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLA 1184 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHH
Confidence                899999999999999999999999999999888442 22223555555444433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.96  E-value=1.6e-05  Score=62.97  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=62.4

Q ss_pred             HHHHHHhccchhhhhhh---HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNR---MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~---y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      .+..+...|..++..++   ..+|...+.+||++                +|.++.+++.+|..+++.|+|++|+..+++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----------------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~   68 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----------------EPYNEAALSLIANDHFISFRFQEAIDTWVL   68 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45677788888875555   79999999999999                999999999999999999999999999999


Q ss_pred             HHHhCCCC
Q psy6102         352 ILLMEPNN  359 (426)
Q Consensus       352 AL~ldp~~  359 (426)
                      +++.+|..
T Consensus        69 ~l~~~p~~   76 (93)
T 3bee_A           69 LLDSNDPN   76 (93)
T ss_dssp             HHTCCCTT
T ss_pred             HHhhCCCC
Confidence            99999984

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.91  E-value=2e-05  Score=79.76  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=68.8

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      .|...|..++..|.|++|+.+|.++                        ..|..+|.|+.++|+|++|++.+.+|.  +|
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~  177 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV------------------------SNFGRLASTLVHLGEYQAAVDGARKAN--ST  177 (449)
T ss_dssp             -------------CTTTHHHHHHHT------------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh------------------------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc
Confidence            7889999999999999999999865                        245677777777777777777777761  11


Q ss_pred             ---------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         358 ---------------------------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       358 ---------------------------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                                                 .+++-+..+..+|...|++++|+..+++++.+++.+..+...++.++..-
T Consensus       178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          178 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                                       22333334557788899999999999999999999999999998887754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.88  E-value=0.00013  Score=72.13  Aligned_cols=45  Identities=7%  Similarity=-0.051  Sum_probs=38.2

Q ss_pred             hhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q psy6102         316 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  361 (426)
Q Consensus       316 ~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~k  361 (426)
                      +.+..++|. ...|..+|.++...|++++|++.|.+|+.++|....
T Consensus       301 ~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          301 NTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            445555764 678899999999999999999999999999998764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.87  E-value=7.4e-05  Score=84.61  Aligned_cols=108  Identities=15%  Similarity=0.180  Sum_probs=89.0

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+...|..++..|+|++|+.+|.+|-                        .|..+|.|+.++|++++|++.+.+|....
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~------------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS------------------------NFGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhh------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence            456789999999999999999998863                        46778888888888888888888774443


Q ss_pred             C-------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         357 P-------------------------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       357 p-------------------------~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +                         .+++.+..++..|...|.|++|+..|+++|.++|.+......++.++...+
T Consensus      1252 aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1252 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence            3                         245566688888999999999999999999999999999988888887643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.81  E-value=2.2e-05  Score=79.48  Aligned_cols=128  Identities=10%  Similarity=0.064  Sum_probs=55.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc----------ch-hhhhhhcCcchHHHHHHHHHHHHHccCHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS----------QS-KTQQKHFRSYYTAALLNMAAVQLKFKAYK  343 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~----------~~-~~~~~~~~p~~~~~~~nlA~~~~~lg~~~  343 (426)
                      ....+...+..+...|+|++|+.+++.+++..+.....          .. .+-..-+++.+...|.++|.++...|.|+
T Consensus        60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~ye  139 (449)
T 1b89_A           60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD  139 (449)
T ss_dssp             -------------------------------------------------CHHHHTTTTTCC----------------CTT
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Confidence            34467777778888899999999888888653221000          11 11111223344569999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         344 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       344 ~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +|+.+|..+        ..|.++|.|+..+|+|++|++++++|     .++.+|.....+...+++.+.|+.
T Consensus       140 eA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~  198 (449)
T 1b89_A          140 AAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM  198 (449)
T ss_dssp             THHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHH
Confidence            999999977        58999999999999999999999999     477788877777777777766653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.44  E-value=0.00042  Score=60.46  Aligned_cols=120  Identities=8%  Similarity=-0.007  Sum_probs=87.2

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      +.+.+....++..+.|+.|+.....++.+.+.......       ......++..+|.+++..++|.+|...|++||++.
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            44667777888899999999999999988432110000       11345688999999999999999999999998652


Q ss_pred             ---CC----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         357 ---PN----------------------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       357 ---p~----------------------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                         +.                      ..+..|.+|.||..++++.+|+..++..- ..-..+.+...|++++
T Consensus        94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence               11                      13788999999999999999999877431 1124556666666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.43  E-value=0.00028  Score=71.49  Aligned_cols=93  Identities=5%  Similarity=0.057  Sum_probs=74.5

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ...+..+.++|..|..+|+|++|+.+|.++|++....-        -...|.-+..++++|.+|..+|++++|+..+++|
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l--------g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF--------PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS--------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc--------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34788899999999999999999999999999843221        1236788889999999999999999999999999


Q ss_pred             HHh-----CCCCH---HHHHHHHHHHHHc
Q psy6102         353 LLM-----EPNNV---KALFRRGRAQVSM  373 (426)
Q Consensus       353 L~l-----dp~~~---kal~~lg~a~~~l  373 (426)
                      +++     -|+++   +++.+++.+...+
T Consensus       398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          398 FDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            976     46664   4455566665443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.38  E-value=0.00032  Score=71.08  Aligned_cols=81  Identities=4%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+.++|..|..+|+|++|+.+|+++|++....-        -...|.-+..+.|+|.+|..+|+|++|+..|++||
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY--------PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc--------CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4678899999999999999999999999999843221        12267788899999999999999999999999999


Q ss_pred             Hh-----CCCCHHH
Q psy6102         354 LM-----EPNNVKA  362 (426)
Q Consensus       354 ~l-----dp~~~ka  362 (426)
                      ++     -|+++..
T Consensus       410 ~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          410 AIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHTCTTCHHH
T ss_pred             HHHHHHcCCCChHH
Confidence            76     4777543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.24  E-value=0.0032  Score=67.42  Aligned_cols=115  Identities=11%  Similarity=0.026  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH
Q psy6102         292 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI-NLCDDILLMEPNNVKALFRRGRAQ  370 (426)
Q Consensus       292 y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai-~~~~~AL~ldp~~~kal~~lg~a~  370 (426)
                      .......|.+||..                .|.+..+|+..|......++.++|+ ..|.+|+...|.+...|+..+...
T Consensus       325 ~~Rv~~~Ye~aL~~----------------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~e  388 (679)
T 4e6h_A          325 KARMTYVYMQAAQH----------------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQY  388 (679)
T ss_dssp             HHHHHHHHHHHHHH----------------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----------------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44566789999988                8999999999999999999999997 999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHHhC-----------CC-----------cHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         371 VSMNNFEQGLQDYEQALDLL-----------PN-----------DQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       371 ~~lg~~~~Al~~l~kAl~l~-----------P~-----------n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      ...|++++|.+.|++++..-           |.           ...++.....+.++.+..+ +.|.+|.+.+.
T Consensus       389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~-~AR~vf~~A~~  462 (679)
T 4e6h_A          389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA-ASRKIFGKCRR  462 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Confidence            99999999999999999852           53           3346677677766666543 44557766554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.14  E-value=0.0011  Score=70.84  Aligned_cols=98  Identities=5%  Similarity=0.019  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLM-EPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLPNDQQILKEIAF  402 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l-dp~~~kal~~lg~a~~~lg-~~~~Al~~l~kAl~l~P~n~~a~~~l~~  402 (426)
                      ...+|...+....+.+..+.|...+.+|++. .+...+.|...|.+-...+ +++.|...|+++++..|+++..+.....
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            4557888888888888899999999999887 5556777777777766664 4899999999999999999988877777


Q ss_pred             HHHHHhhHHHHHHHHHHhhhc
Q psy6102         403 VRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       403 i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      .....++.+ ..|.+|.+.+.
T Consensus       513 fe~~~~~~~-~AR~lferal~  532 (679)
T 4e6h_A          513 FLIYVNEES-QVKSLFESSID  532 (679)
T ss_dssp             HHHHHTCHH-HHHHHHHHHTT
T ss_pred             HHHhCCCHH-HHHHHHHHHHH
Confidence            766666544 44667777654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.11  E-value=0.0033  Score=53.89  Aligned_cols=100  Identities=9%  Similarity=0.022  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102         290 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  369 (426)
Q Consensus       290 g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a  369 (426)
                      +-.+.-++.|++|+..++...        ......++.+|...|.. ..+++.++|.+.|+.++.+....++.|...|+-
T Consensus        33 ~~l~rlrd~YerAia~~Pp~k--------~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqF  103 (161)
T 4h7y_A           33 ALLNKLIGRYSQAIEALPPDK--------YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQF  103 (161)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGG--------GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCccc--------cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            334788899999999865431        33366778899999855 788999999999999999988889999999999


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q psy6102         370 QVSMNNFEQGLQDYEQALDLLPNDQQILK  398 (426)
Q Consensus       370 ~~~lg~~~~Al~~l~kAl~l~P~n~~a~~  398 (426)
                      -..+|+...|...+.+|+.+.|...+...
T Consensus       104 EiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A          104 ELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            99999999999999999999998876544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.89  E-value=0.0036  Score=52.12  Aligned_cols=77  Identities=14%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             HHHHhccchhhhhhhHHH---HHHHHHHHHHHHHhhcccchhhhhhhcC-c-chHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLNRMHD---AQRKYKKAVRYIKWYNQSQSKTQQKHFR-S-YYTAALLNMAAVQLKFKAYKRAINLCDD  351 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~---Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-p-~~~~~~~nlA~~~~~lg~~~~Ai~~~~~  351 (426)
                      +..++.|..+.+..+-..   +|..+...+..                . | ..-++++.+|..++++|+|.+|+.+++.
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----------------~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----------------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----------------CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            445555555555554443   66666665543                3 4 5678999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRA  369 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a  369 (426)
                      .|+++|+|..|.--+..+
T Consensus       100 lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A          100 LLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHH
Confidence            999999998887655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.60  E-value=0.012  Score=49.35  Aligned_cols=63  Identities=13%  Similarity=0.042  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc-chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy6102         291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS-YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  369 (426)
Q Consensus       291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p-~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a  369 (426)
                      +...+|..+...++.                .| ..-++++.+|..++++|+|++|..+++..|+++|+|..|.--+..+
T Consensus        58 d~~~GI~LLe~l~~~----------------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           58 DERLGVKILTDIYKE----------------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHH----------------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc----------------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            566788888777765                55 5678999999999999999999999999999999998876555443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.50  E-value=0.016  Score=57.68  Aligned_cols=113  Identities=12%  Similarity=0.021  Sum_probs=88.2

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhccc------chhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~------~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      .+.+...|......++...|+..+.+|+.+..-....      +.......+......+...++.+++..|++.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3445555666666788999999999999874211100      1112223344566778888999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  388 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~  388 (426)
                      ..++..+|-+-.+|..+-.+|...|+..+|++.|+++.+
T Consensus       195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998755

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.33  E-value=0.052  Score=55.58  Aligned_cols=142  Identities=9%  Similarity=-0.009  Sum_probs=101.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccch-hhhh----------h-------------hcCcchHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-KTQQ----------K-------------HFRSYYTAALLN  331 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~-~~~~----------~-------------~~~p~~~~~~~n  331 (426)
                      ...|...+..+...|+.+.|...|.+|+.. |......- ....          .             ...+....+|..
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            567888888888899999999999999988 54321110 0000          0             011223467888


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhH
Q psy6102         332 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  410 (426)
Q Consensus       332 lA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg-~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~  410 (426)
                      .+....+.+..+.|...+.+| ...+.....|...|..-...+ +.+.|...|+.+++..|+++..+.........+++.
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence            888888899999999999999 544456777777777766665 699999999999999999988766666666665554


Q ss_pred             HHHHHHHHHh
Q psy6102         411 LNLEKMTYAR  420 (426)
Q Consensus       411 ~~a~k~~~~k  420 (426)
                      +. .|.+|.+
T Consensus       371 ~~-aR~l~er  379 (493)
T 2uy1_A          371 EN-ARALFKR  379 (493)
T ss_dssp             HH-HHHHHHH
T ss_pred             HH-HHHHHHH
Confidence            43 3445554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.28  E-value=0.023  Score=48.15  Aligned_cols=77  Identities=13%  Similarity=0.026  Sum_probs=58.2

Q ss_pred             HHHHhccchhhhhh---hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCc-chHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYFKLN---RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS-YYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       277 ~~~~~~G~~~f~~g---~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p-~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      +..++.+..+.+..   +-.++|..++..+..                .| ..-++++.+|..++++|+|++|..+++..
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~----------------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l  103 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----------------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  103 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH----------------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----------------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34445555555444   455677777777665                45 57789999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHH
Q psy6102         353 LLMEPNNVKALFRRGRA  369 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a  369 (426)
                      |+++|+|..|.--+..+
T Consensus       104 L~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A          104 FEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHTCCCCHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHH
Confidence            99999998876554433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.81  E-value=0.03  Score=48.68  Aligned_cols=89  Identities=10%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC---
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---------VKALFRRGRAQVSMNNFEQGLQDYEQALDLL---PN---  392 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~---------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~---P~---  392 (426)
                      ++..-...++..+.|+.|+-.+..++.+..++         ..+++.+|.+++..++|.+|...|++||.+.   |.   
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44555566778999999999999988775433         4589999999999999999999999997642   22   


Q ss_pred             -------------------cHHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         393 -------------------DQQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       393 -------------------n~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                                         +.++...++.|+..+++.++|...
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence                               227889999999999999988653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.035  Score=59.75  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=57.1

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA  386 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kA  386 (426)
                      |....++.-.|.-++..|+|+-|++.+++|+.+-|...+.|+.++.||..+|+|+.|+-.++-+
T Consensus       334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445577777888889999999999999999999999999999999999999999999777655

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.68  E-value=0.14  Score=52.24  Aligned_cols=124  Identities=7%  Similarity=-0.048  Sum_probs=95.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILL  354 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL~  354 (426)
                      ...|...+....+.++.+.|...|.+| ..                .+....+|...|..-...+ +++.|...++.+++
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----------------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~  348 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN----------------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL  348 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----------------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----------------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            345666666666778889999999988 32                2334567777777777766 69999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      ..|+.++.+...+.....+|+.+.|...|+++    +.....+..........|..+.. +.++.+.
T Consensus       349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~-r~v~~~~  410 (493)
T 2uy1_A          349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELF-RELVDQK  410 (493)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHH-HHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHH-HHHHHHH
Confidence            99999998888888888999999999999998    45677888877777777765443 3344443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.08  E-value=0.4  Score=49.06  Aligned_cols=121  Identities=9%  Similarity=0.057  Sum_probs=80.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHH
Q psy6102         286 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-PNNVKALF  364 (426)
Q Consensus       286 ~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld-p~~~kal~  364 (426)
                      ..+.++.+.|...|.+..+.              .+.| +...|..+-.++.+.|++++|++.+++..+.. .-+...|.
T Consensus        80 ~~~~~~l~~A~~lf~~M~~~--------------G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn  144 (501)
T 4g26_A           80 SSPNPGLSRGFDIFKQMIVD--------------KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG  144 (501)
T ss_dssp             SSCCHHHHHHHHHHHHHHHT--------------TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHHh--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence            34556677777777765543              1123 45667777788888888888888887776543 22566777


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q psy6102         365 RRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  423 (426)
Q Consensus       365 ~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~  423 (426)
                      .+-.+|...|+.++|.+.|+...+.  .| |...+..+-..+...++.+++.+ ++++|.+
T Consensus       145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~-ll~~Mr~  203 (501)
T 4g26_A          145 PALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYK-TLQRLRD  203 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHH-HHHHHHH
Confidence            7777788888888888888877664  33 44555666666677777766654 5555543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.75  E-value=0.18  Score=47.31  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       334 ~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      ..+++.+..++|++.+...++-+|.+++.-..+-+.+.-.|++++|..-++.+.+++|+.......+..+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999987665554444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.48  E-value=0.19  Score=51.49  Aligned_cols=80  Identities=8%  Similarity=0.000  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  407 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l  407 (426)
                      ++..+|.+......+..|..+|.+|+.+.|++..+|..+|.+....++.-+|+-+|-+++....-.+.+..++..+....
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            56667777777788899999999999999999999999999999999999999999999998777888888888877653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.26  E-value=0.74  Score=40.22  Aligned_cols=75  Identities=19%  Similarity=0.123  Sum_probs=59.5

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhC---------------CCCHHHH-HHHHHHHHHcCChHHHHHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDIL--LME---------------PNNVKAL-FRRGRAQVSMNNFEQGLQDYE  384 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL--~ld---------------p~~~kal-~~lg~a~~~lg~~~~Al~~l~  384 (426)
                      -+-..+.+-.+.||.++++|..|+..++..|  +.+               |.+-+.+ .-+|.++...|+.++|+.+|.
T Consensus        59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~  138 (242)
T 3kae_A           59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV  138 (242)
T ss_dssp             CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence            3456777788999999999999999999999  332               4445544 456889999999999999999


Q ss_pred             HHHHhCCCcHHHH
Q psy6102         385 QALDLLPNDQQIL  397 (426)
Q Consensus       385 kAl~l~P~n~~a~  397 (426)
                      ......|--+.+-
T Consensus       139 ~Sf~~~~lf~~vE  151 (242)
T 3kae_A          139 RSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHHCCCHHHHH
T ss_pred             hhcCCccccchHH
Confidence            9998887655443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.26  E-value=0.21  Score=49.63  Aligned_cols=99  Identities=10%  Similarity=0.039  Sum_probs=80.8

Q ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C
Q psy6102         281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME---P  357 (426)
Q Consensus       281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld---p  357 (426)
                      .+|..|+..|+|.+|+..+++.++.+.....          .....+++.....+|..++++.++...+.+|....   +
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd----------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD----------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC----------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc----------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence            7899999999999999999999988654321          34667889999999999999999999999997653   1


Q ss_pred             CC----HHHHHHHHHHHH-HcCChHHHHHHHHHHHHh
Q psy6102         358 NN----VKALFRRGRAQV-SMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       358 ~~----~kal~~lg~a~~-~lg~~~~Al~~l~kAl~l  389 (426)
                      .+    +.....-|..++ ..++|..|..+|-.+++-
T Consensus       174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            22    344556688888 899999999999988753

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.11  E-value=0.25  Score=49.57  Aligned_cols=102  Identities=12%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      ..+..+|..+++.|+++.|++.|.++......             ......++.....+++..++|..+...++++-.+.
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-------------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~  198 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-------------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI  198 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-------------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence            34678899999999999999999998876422             35668899999999999999999999999987653


Q ss_pred             C--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy6102         357 P--NN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  391 (426)
Q Consensus       357 p--~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P  391 (426)
                      .  .+    .+.....|.++...++|..|...|-.++.-..
T Consensus       199 ~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          199 EKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             TTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            2  22    23445567778889999999999988876543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.02  E-value=0.82  Score=42.79  Aligned_cols=63  Identities=8%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102         284 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  362 (426)
Q Consensus       284 ~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka  362 (426)
                      ..+++.++.++|+......|+.                +|.++.....+-..+.-.|+|+.|..-++.+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~----------------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKA----------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh----------------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            4577889999999999999998                99999999999999999999999999999999999987553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.65  E-value=0.75  Score=39.31  Aligned_cols=92  Identities=8%  Similarity=-0.048  Sum_probs=74.8

Q ss_pred             CcchHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAY------KRAINLCDDILLMEPN--------NVKALFRRGRAQVSMNNFEQGLQDYEQAL  387 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~------~~Ai~~~~~AL~ldp~--------~~kal~~lg~a~~~lg~~~~Al~~l~kAl  387 (426)
                      .|.+.+.|.+......+.|+.      ++-++.|++|+..-|-        +...|.+.|.- ..+++.++|.+.|+.|+
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            799999999999999989999      9999999999987664        35567777754 66699999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         388 DLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       388 ~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      .++..-+-++...++.+.+.++...+.
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            997777777777777777766666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.35  E-value=3.2  Score=42.28  Aligned_cols=129  Identities=14%  Similarity=0.072  Sum_probs=91.7

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc---------cCHHHHHHHH
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---------KAYKRAINLC  349 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l---------g~~~~Ai~~~  349 (426)
                      +...-+.+.+.|++++|+..|.+..+.              .+.|+ ...|..+-.++.+.         +..++|.+.+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~--------------Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf   93 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN--------------GVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF   93 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH--------------TCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc--------------CCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH
Confidence            344457788999999999999988764              11343 34444444444333         3478899988


Q ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         350 DDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       350 ~~AL~ld-p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l--~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      ++..... +-+...|..+-.+|...|++++|++.|++..+.  .| |...+..+-..+...++.+++.+ +|..|...
T Consensus        94 ~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~-l~~~M~~~  169 (501)
T 4g26_A           94 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYE-VDAHMVES  169 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHT
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHH-HHHHHHhc
Confidence            8776543 236778888999999999999999999998775  34 55666666677777788777754 67776544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.30  E-value=1.7  Score=42.75  Aligned_cols=86  Identities=8%  Similarity=-0.029  Sum_probs=69.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC--------C--C------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEP--------N--N------------VKALFRRGRAQVSMNNFEQGLQDYEQAL  387 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp--------~--~------------~kal~~lg~a~~~lg~~~~Al~~l~kAl  387 (426)
                      ...|......++.+.|+..+.+||.+-.        .  .            ..++..++.++..+|++.+|+..++.++
T Consensus       119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~  198 (388)
T 2ff4_A          119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT  198 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3334444556889999999999998731        1  1            2356677888999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         388 DLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       388 ~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ..+|-+..++..+-.++...++..+|.+
T Consensus       199 ~~~P~~E~~~~~lm~al~~~Gr~~~Al~  226 (388)
T 2ff4_A          199 FEHPYREPLWTQLITAYYLSDRQSDALG  226 (388)
T ss_dssp             HHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999998887764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.66  E-value=1.4  Score=43.70  Aligned_cols=93  Identities=11%  Similarity=0.078  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCcHH---
Q psy6102         328 ALLNMAAVQLKFKAYKRAINLCDDILLM----EP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL---PNDQQ---  395 (426)
Q Consensus       328 ~~~nlA~~~~~lg~~~~Ai~~~~~AL~l----dp--~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~---P~n~~---  395 (426)
                      +=..+|..|+..|+|.+|++.+.+.++-    |.  .-.+.+....++|..++++..+.+.|.+|....   +-++.   
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            3348899999999999999999888863    21  126678888999999999999999999997753   23343   


Q ss_pred             -HHHHHHHHHH-HHhhHHHHHHHHHHh
Q psy6102         396 -ILKEIAFVRK-QMRHHLNLEKMTYAR  420 (426)
Q Consensus       396 -a~~~l~~i~~-~l~~~~~a~k~~~~k  420 (426)
                       +...-+.++. ..+++++|....|..
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence             3334444455 567778887777665

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.16  E-value=1.5  Score=47.06  Aligned_cols=108  Identities=9%  Similarity=0.027  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHH--Hc-cCHHHHHHHHHHHHH--------hCCCC
Q psy6102         291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQL--KF-KAYKRAINLCDDILL--------MEPNN  359 (426)
Q Consensus       291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~--~l-g~~~~Ai~~~~~AL~--------ldp~~  359 (426)
                      -++.|+..+.+....                +|..... +.++.+.+  ++ .+--+|+....++|+        +.+.+
T Consensus       264 ~~~~a~~~le~L~~~----------------~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~  326 (754)
T 4gns_B          264 LVDFTIDYLKGLTKK----------------DPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD  326 (754)
T ss_dssp             GHHHHHHHHHHHHHH----------------CGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHHHHhh----------------CCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence            367788888877666                6655433 33333322  12 345567777777763        23333


Q ss_pred             ----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         360 ----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       360 ----------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                                ...+.--+.-+...|+|+-|+++-++|..+.|++-..|..|..++..+++++.|--
T Consensus       327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL  392 (754)
T 4gns_B          327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF  392 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence                      23455556777889999999999999999999999999999999999999998854

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.09  E-value=0.83  Score=46.74  Aligned_cols=82  Identities=11%  Similarity=-0.032  Sum_probs=73.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      +-..+..+|....-...+..|..+|.+|+.+                .|.+...|..+|.+....++.-+|+-+|.++|.
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~----------------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL----------------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHh----------------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            3445677899988889999999999999999                999999999999999999999999999999998


Q ss_pred             hCCCCHHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVS  372 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~  372 (426)
                      ...-.+.|.-++...+..
T Consensus       215 ~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          215 VKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSBCCHHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHHHHH
Confidence            877788888888877754

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.98  E-value=2.2  Score=42.91  Aligned_cols=105  Identities=11%  Similarity=0.003  Sum_probs=79.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+.....++..++..|+|.+|.........-....+.          ...-..++......++..++|.+|...++++..
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~----------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME----------MSEKIQFILEQMELSILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5666788999999999999999998887643211110          234467888899999999999999999998742


Q ss_pred             ---hCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy6102         355 ---MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDL  389 (426)
Q Consensus       355 ---ldp~~----~kal~~lg~a~~~lg~~~~Al~~l~kAl~l  389 (426)
                         -.+..    ...+...|..+...++|.+|..+|..++..
T Consensus       206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               23333    345566788899999999999999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.97  E-value=3.3  Score=43.74  Aligned_cols=47  Identities=19%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA  386 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kA  386 (426)
                      ..+++|++++|.+.++     ..++...|-.+|..+...++++.|..+|.++
T Consensus       661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3455666666666542     2345667777777777777777777777665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.18  E-value=4.3  Score=42.79  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=38.6

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHcCChHHHH
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDI--------LLMEPNNVKALFRRGRAQVSMNNFEQGL  380 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A--------L~ldp~~~kal~~lg~a~~~lg~~~~Al  380 (426)
                      ..+...|.++|..+++.++++.|+++|.++        |.....+.+.+-.++......|++..|.
T Consensus       678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~  743 (814)
T 3mkq_A          678 ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF  743 (814)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence            345789999999999999999999999885        2222445555555544444443333333

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.16  E-value=1  Score=46.21  Aligned_cols=71  Identities=7%  Similarity=0.036  Sum_probs=58.5

Q ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         324 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP--NN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       324 ~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp--~~---~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      ....++..+=..|+..+.|++|.....++.-...  .+   ...+|..|.++..+++|.+|.+++..|++..|.+.
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            4466788888899999999999999998852211  11   56788899999999999999999999999888654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=84.24  E-value=19  Score=31.50  Aligned_cols=90  Identities=11%  Similarity=0.070  Sum_probs=68.3

Q ss_pred             cchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------
Q psy6102         323 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD--------------  388 (426)
Q Consensus       323 p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~--------------  388 (426)
                      |..+..-..++.+++-.|+|..|+-.+     ..-+...+.|..+.||..+.+|..|+.+++..++              
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            334455566778888999999988754     3446788899999999999999999999999993              


Q ss_pred             ---hCCCcHH-HHHHHHHHHHHHhhHHHHHHHH
Q psy6102         389 ---LLPNDQQ-ILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       389 ---l~P~n~~-a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                         .+|.+++ ....++.+..+.+..+++-+..
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~  137 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY  137 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence               2466665 4556778888889888887643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=83.57  E-value=9.1  Score=33.35  Aligned_cols=47  Identities=13%  Similarity=0.133  Sum_probs=39.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102         336 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL  387 (426)
Q Consensus       336 ~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl  387 (426)
                      .+++|+++.|.+.++..     ++...|-++|.+.+..|+++-|..+|+++-
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            46789999999887654     678899999999999999999999998873

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=81.48  E-value=3.7  Score=31.12  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             hhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q psy6102         272 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW  308 (426)
Q Consensus       272 ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~  308 (426)
                      ....+..+...|...=+.|+|++|+.+|.+||+.+..
T Consensus        15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4456777888889999999999999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	4e-28
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-27
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	5e-26
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	2e-25
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	6e-25
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-23
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	3e-23
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-23
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	7e-21
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	3e-20
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	3e-20
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-19
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	4e-19
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	6e-17
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	1e-16
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-15
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-14
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-14
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-13
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	5e-11
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-11
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-09
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	2e-08
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	7e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	9e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-05
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	6e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	7e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  107 bits (267), Expect = 4e-28
 Identities = 56/98 (57%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSHFHRII 71
           VFLDV+I     GR+V+EL+  I P+T  NF  LCTG  G GK+ GK LH+ GS FHR+I
Sbjct: 6   VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 65

Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
             FMIQGGD T  +GTGGESIYG  F+DE F +K   P
Sbjct: 66  KNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEP 103

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (264), Expect = 2e-27
 Identities = 69/100 (69%), Positives = 74/100 (74%), Gaps = 1/100 (1%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
              N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G 
Sbjct: 11  NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGC 70

Query: 66  HFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  K
Sbjct: 71  PFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 110

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  101 bits (252), Expect = 5e-26
 Identities = 66/100 (66%), Positives = 73/100 (73%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
              VF D++IG +  GR+V+EL+  +VPKTA NFRALCTGE G GK GK LHF GS FHR
Sbjct: 3   RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIP FMIQGGD T  NGTGGESIYG  F DENFK K   P
Sbjct: 63  IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGP 102

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (247), Expect = 2e-25
 Identities = 58/101 (57%), Positives = 69/101 (68%), Gaps = 7/101 (6%)

Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G         + GS FH
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF-------GYKGSTFH 53

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           R+IP FM Q GD TN NGTGG+SIYG  F DENF LK + P
Sbjct: 54  RVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGP 94

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 97.9 bits (243), Expect = 6e-25
 Identities = 53/93 (56%), Positives = 64/93 (68%), Gaps = 7/93 (7%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D++     +G +  +LF  +VPKTA NFRALCTGE G G       + GSHFHR+IP
Sbjct: 4   VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVIP 56

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FM+QGGD T  NGTGG+SIYG  F DENF+LK
Sbjct: 57  DFMLQGGDFTAGNGTGGKSIYGAKFADENFQLK 89

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 94.1 bits (233), Expect = 2e-23
 Identities = 56/92 (60%), Positives = 64/92 (69%), Gaps = 7/92 (7%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF DV IG++ VGR+VI LF ++VPKT ENF AL TGE G G       + GS FHR+I 
Sbjct: 10  VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFHRVIK 62

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKL 104
            FMIQGGD T  +GTGG SIYG  F DENFKL
Sbjct: 63  DFMIQGGDFTARDGTGGMSIYGETFPDENFKL 94

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 93.4 bits (231), Expect = 3e-23
 Identities = 59/93 (63%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           VF D+SI     GR++ ELF  I P+T ENFRALCTGE    + GK LH+  S FHRIIP
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSR-GKNLHYKNSIFHRIIP 64

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           QFM QGGDITN NG+GGESIYG  F DENF +K
Sbjct: 65  QFMCQGGDITNGNGSGGESIYGRSFTDENFNMK 97

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 93.7 bits (232), Expect = 4e-23
 Identities = 50/93 (53%), Positives = 59/93 (63%), Gaps = 7/93 (7%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D+ IG + +GR+VI LF   VPKTA NF  L     G+G       + GS FHR+I 
Sbjct: 9   VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIA 61

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGD T  +GTGG SIYG  F DENFKLK
Sbjct: 62  DFMIQGGDFTRGDGTGGRSIYGEKFADENFKLK 94

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 86.8 bits (214), Expect = 7e-21
 Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 7/93 (7%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+ D++IG+E VGR+VI LF + VPKT ENF+ L +GE G G       + GS FHR+I 
Sbjct: 8   VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVIR 60

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQGGD TNF+GTGG+SIYG  F+DEN K+K
Sbjct: 61  NFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIK 93

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 85.7 bits (211), Expect = 3e-20
 Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 2/96 (2%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N +VF+D+++G   +G+   ELF++IVPKT+ENFR  CTGEY        + +  + FHR
Sbjct: 16  NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHR 73

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           +I +FMIQGGD  N NG+G  SIYG  F+DENF +K
Sbjct: 74  VIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIK 109

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 3e-20
 Identities = 56/100 (56%), Positives = 65/100 (65%), Gaps = 7/100 (7%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N  V++D+ IG +  GR+ + L   +VP TAENFR LCT E       K   F GS FHR
Sbjct: 1   NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE-------KGFGFKGSSFHR 53

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           IIPQFM QGGD TN NGTGG+SIYG  F+DENF LK   P
Sbjct: 54  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGP 93

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 1e-19
 Identities = 59/100 (59%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHR 69
           N +VF DVSIG ++VGRM IELF  +VPKTAENFR  CTGE+ K   G  + + GS FHR
Sbjct: 6   NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKD--GVPIGYKGSTFHR 63

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKGIYP 109
           +I  FMIQGGD  N +GTG  SIY   F DENFKL+   P
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAP 103

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 82.2 bits (202), Expect = 4e-19
 Identities = 53/98 (54%), Positives = 57/98 (58%), Gaps = 12/98 (12%)

Query: 13  VFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
           VF DV        E KVGR+V  LF   VPKTA+NFR LC    G+        +  S F
Sbjct: 4   VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE-------GYRESTF 56

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
           HRIIP FMIQGGD T  NGTGG SIYG  F DENF  K
Sbjct: 57  HRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRK 94

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 6e-17
 Identities = 41/94 (43%), Positives = 49/94 (52%), Gaps = 17/94 (18%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
           V+L+ S+G      +V+EL+    PKT +NF  L    Y  G            FHRII 
Sbjct: 14  VYLETSMG-----IIVLELYWKHAPKTCKNFAELARRGYYNGT----------KFHRIIK 58

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLK 105
            FMIQGGD T   G GG SIYG  FEDE +  LK
Sbjct: 59  DFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLK 91

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 1e-16
 Identities = 36/92 (39%), Positives = 45/92 (48%), Gaps = 15/92 (16%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
           G + +EL   + PKT ENF  LC   Y          + G+ FHR I  F+IQGGD T  
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG- 58

Query: 85  NGTGGESIYGPCFEDENFKLKGIYPKNKYPGI 116
            GTGGES +G  F+DE          +   GI
Sbjct: 59  TGTGGESYWGKPFKDEFRP----NLSHTGRGI 86

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 71.9 bits (175), Expect = 1e-15
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 330
           +  +    +K  G  YFK  +   A  +Y K            S+ + K   S+  AA L
Sbjct: 10  EKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKI-VSWLEMEYGLSEKESKASESFLLAAFL 68

Query: 331 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390
           N+A   LK + Y +A+  CD  L ++  N K L+RRG AQ+ MN FE    D+E+ L++ 
Sbjct: 69  NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128

Query: 391 PNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 423
           P ++    +I   +K+ + H   ++ TYA MF+
Sbjct: 129 PQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 6e-14
 Identities = 40/161 (24%), Positives = 84/161 (52%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
           + E  +     ++++  +   +KN GN +FK      A +KY K +RY++    +     
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
               +    + +LN+ A +LK   ++ A++ C + L ++P+N KAL+RR +    +  ++
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128

Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 418
           Q L D ++A ++ P D+ I  E+  V+++++   + EK  Y
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 67.2 bits (163), Expect = 7e-14
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLG-----KALHFTGSHFHRIIPQFMIQGG 79
           G + I LF +  PKT  NF  L  G                 + G+ FHR+I  FMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 80  DITNFNGTGGESIYGPCFEDENFKLKG 106
           D T   G GG             +   
Sbjct: 73  DPTG-TGRGGPGYKFADEFHPELQFDK 98

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 2e-13
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 1/154 (0%)

Query: 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 330
           +  +    +K  G  YFK  +   A  +YKK V ++  Y  S S  + +  ++   A+ L
Sbjct: 8   EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHL 66

Query: 331 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390
           N+A   LK +A+  AI  C+  L ++ NN K L RRG A +++N+FE    D+++ L L 
Sbjct: 67  NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126

Query: 391 PNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 424
           PN++    ++A  ++++R  L  EK  YA MF+ 
Sbjct: 127 PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 160

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 58.5 bits (140), Expect = 5e-11
 Identities = 36/138 (26%), Positives = 66/138 (47%)

Query: 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 330
           +       IK  GNE+FK N +++A  KYK+A+ +     +   +      ++   +  L
Sbjct: 12  EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 71

Query: 331 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390
           N+A    K K Y +AI+    +L ++ NNVKAL++ G A +     E+  ++  +A  L 
Sbjct: 72  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131

Query: 391 PNDQQILKEIAFVRKQMR 408
           PN+  I         +++
Sbjct: 132 PNNLDIRNSYELCVNKLK 149

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 58.4 bits (140), Expect = 6e-11
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHF 67
           +G+  V L  S      G + +EL K   P + +NF                  +  + F
Sbjct: 2   KGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTF 46

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKG 106
           HR+IP FMIQGG  T        +       D   +   
Sbjct: 47  HRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTR 85

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC           + ++ G  FHR I  FM+Q GD T 
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGDPTG 58

Query: 84  FNGTGGESIYGPCFEDENFKLK 105
               G         ++ +  LK
Sbjct: 59  TGRGGNSIWGKKFEDEYSEYLK 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 16/150 (10%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
              A +     +           N  N   +   + +A+  Y  A+R    +  S     
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL---- 308

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
                        N+A ++ +    + A+ L    L + P    A              +
Sbjct: 309 ------------NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356

Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQM 407
           + L  Y++A+ + P        +    K+M
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 9e-09
 Identities = 11/96 (11%), Positives = 27/96 (28%)

Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
            + +A  + +   ++ A   C  +   EP+N   L             ++       A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 389 LLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 424
             P   +    +  V K+        +     +   
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 16/153 (10%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
           +  A       L+   +      N    Y++   +  A   Y++A+              
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------------ 266

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
               + ++  A  N+A    +  +   A +  +  L + P +  +L      +    N E
Sbjct: 267 ----QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322

Query: 378 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 410
           + ++ Y +AL++ P        +A V +Q    
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 328
                  I T  N    +  L  + +AQ +   A+ + +                 +  A
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---------FLDA 205

Query: 329 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 388
            +N+  V  + + + RA+      L + PN+                 +  +  Y +A++
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

Query: 389 LLPNDQQILKEIAFVRKQMRHHLNLEKM 416
           L P+       +A   K+       E  
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDC 293

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
             EAE+     L        ++ N  N   +   + +A R Y+KA+              
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV------------ 334

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 375
                  + AA  N+A+V  +    + A+    + + + P    A    G     M +
Sbjct: 335 ----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 16/94 (17%)

Query: 283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 342
            +  ++      A+R   +  R                     T  LL ++++  + +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQ----------------EPDNTGVLLLLSSIHFQCRRL 49

Query: 343 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 376
            R+ +     +   P   +A    G         
Sbjct: 50  DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (125), Expect = 7e-09
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNF 84
           G +VI+ F    P+T +NF   C          +   +  + FHR+I  FMIQGG     
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFE-- 56

Query: 85  NGTGGESIYGPCFEDENFK 103
            G   ++   P   + N  
Sbjct: 57  PGMKQKATKEPIKNEANNG 75

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIP 72
              D +I    +G +  +LF    PKT ENF              +  ++ G  FHRII 
Sbjct: 7   RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHRIIK 56

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLK 105
            FMIQ GD T     G     G   ++ +  L+
Sbjct: 57  GFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLR 89

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 49.6 bits (117), Expect = 7e-08
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G + I LF     KT +NF                 ++    FHR+I  FM+Q GD + 
Sbjct: 10  MGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSG 59

Query: 84  FNGTGGESIYGPCFEDENF 102
             GTGGESI+G  FEDE F
Sbjct: 60  D-GTGGESIWGNEFEDEFF 77

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (119), Expect = 7e-08
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           +K  GN  F   +  +A   Y +A+                           N A   LK
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLK 50

Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            +  ++A+  C   L ++  +VKA F  G+ Q+ M ++++ + + ++A  L    +    
Sbjct: 51  MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110

Query: 399 EIAFVRKQMRHHLNLEKMTYARMFQN 424
           +      ++        +   R+ Q 
Sbjct: 111 DDIPSALRIAKKKRWNSIEERRIHQE 136

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
           K  GN+ +K      A + Y KA           +     +F                  
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR--------- 58

Query: 340 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 399
           +  ++AI +  +         KA  R G +      ++  +  Y ++L        +LK+
Sbjct: 59  ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHRTPDVLKK 117

Query: 400 IAFVRKQMR 408
                K ++
Sbjct: 118 CQQAEKILK 126

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-07
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 330
            ME V+       NE   +  +   ++K++               TQ ++          
Sbjct: 1   HMEAVL-------NELVSVEDLLKFEKKFQSEKAA----GSVSKSTQFEYAWCLVRTRYN 49

Query: 331 NMAAVQLKFKAYKRAINLCDDILLMEPNN--VKALFRRGRAQVSMNNFEQGLQDYEQALD 388
           +           ++ I L +++L           +F        +  +E+ L+     L 
Sbjct: 50  DD---------IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 100

Query: 389 LLPNDQQILKEIAFVRKQM 407
             P + Q  +    + K M
Sbjct: 101 TEPQNNQAKELERLIDKAM 119

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 15/143 (10%), Positives = 45/143 (31%)

Query: 281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 340
           N G  Y  L  M +A++ + +++   K    +  +    ++++      +      L   
Sbjct: 41  NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 100

Query: 341 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 400
              + I+     L  +    + L+           +++  +    A  +    +    + 
Sbjct: 101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160

Query: 401 AFVRKQMRHHLNLEKMTYARMFQ 423
           A      +       +   R+F+
Sbjct: 161 AMECVWKQKLYEPVVIPVGRLFR 183

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 16/133 (12%)

Query: 274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 333
           + +  +K  GN+   +  + DA + Y +A++     +   S     + +           
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 393
              +  K             L                  +N FE+  + YE+ L    N+
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEF----------------LNRFEEAKRTYEEGLKHEANN 104

Query: 394 QQILKEIAFVRKQ 406
            Q+ + +  +  +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 16/130 (12%)

Query: 279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 338
           +K   N+YFK        + Y+ A+++     +        +                L+
Sbjct: 13  LKTQANDYFK-------AKDYENAIKFYSQAIELNPSNAIYYGNRSLA---------YLR 56

Query: 339 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 398
            + Y  A+      + ++   +K  +RR  + +++  F   L+DYE  + + P+D+    
Sbjct: 57  TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 116

Query: 399 EIAFVRKQMR 408
           +     K ++
Sbjct: 117 KYQECNKIVK 126

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN 83
           +G   +EL+ +  PKT  NF  LC              +  + FHR+IP F+IQGGD T 
Sbjct: 25  LGDFEVELYWYHSPKTCLNFYTLCEMG----------FYDNTIFHRVIPNFVIQGGDPTG 74

Query: 84  FNGTGGESIYGPCFEDENFKLK 105
               G         ++ N +LK
Sbjct: 75  TGKGGKSIYGEYFEDEINKELK 96

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 8/144 (5%), Positives = 40/144 (27%), Gaps = 15/144 (10%)

Query: 280 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 339
            +            +A    ++A+      + +    +      +       +A      
Sbjct: 13  LSDAQRQLVAGEYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68

Query: 340 KAYKRAINLCDDILLMEPNNVKAL-----------FRRGRAQVSMNNFEQGLQDYEQALD 388
           +++  A++  D  L       +             + R  A   +    + + ++++ ++
Sbjct: 69  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128

Query: 389 LLPNDQQILKEIAFVRKQMRHHLN 412
           ++   +        + +     + 
Sbjct: 129 MIEERKGETPGKERMMEVAIDRIA 152

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 13/135 (9%), Positives = 33/135 (24%), Gaps = 18/135 (13%)

Query: 258 YVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 317
           Y +   +   V N            G    K        +    +  YI           
Sbjct: 102 YTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----------- 150

Query: 318 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 377
                      L+++  +        +A +       + P+N +   +      S  +  
Sbjct: 151 -------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHL 203

Query: 378 QGLQDYEQALDLLPN 392
             +  Y +++ +   
Sbjct: 204 TTIFYYCRSIAVKFP 218

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 30/221 (13%), Positives = 58/221 (26%), Gaps = 19/221 (8%)

Query: 192 LEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG 251
           L++  Y  Q A   K  +T+   KL        SR+  +DL +K    +  +   ++   
Sbjct: 3   LQSAQYLRQ-AEVLKADMTD--SKLGPAEV-WTSRQALQDLYQKMLVTDLEYALDKKVEQ 58

Query: 252 VAREVSYVEAENDKPLVLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ 311
                ++          L            S  +      +  A   Y + ++ +     
Sbjct: 59  DLWNHAFKNQIT----TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN 114

Query: 312 SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQV 371
                               +  +  K       +                L   G    
Sbjct: 115 VDLP---------CRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIAR 163

Query: 372 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN 412
             N   Q    Y  A  L+P++ Q   ++A +      HL 
Sbjct: 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT 204

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 13/83 (15%), Positives = 28/83 (33%)

Query: 328 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 387
                   +L+      A+ L +  +  +P +++A    G  Q         +    + L
Sbjct: 21  QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 80

Query: 388 DLLPNDQQILKEIAFVRKQMRHH 410
           +L P++Q  L  +A         
Sbjct: 81  ELKPDNQTALMALAVSFTNESLQ 103

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDY 383
           +        AV  + +  +RA  L  D + +   N      R     S+  +  + +   
Sbjct: 42  FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 101

Query: 384 EQALDLLPNDQQILKEIAFVRKQMRHH 410
              ++  P + Q+      + + +R  
Sbjct: 102 TAIIEEQPKNYQVWHHRRVLVEWLRDP 128

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 13/123 (10%), Positives = 46/123 (37%), Gaps = 4/123 (3%)

Query: 271 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 330
             +D++   ++  N+ F+   ++ A++K  +           +   +++   +     L 
Sbjct: 124 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 183

Query: 331 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 390
           N++   L  +          D   +  +  +  F  G+  +S+ + +     ++ A+   
Sbjct: 184 NISEQTLMERLKA----DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239

Query: 391 PND 393
            ++
Sbjct: 240 VHN 242

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	99.98
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	99.98
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	99.97
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.97
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	99.97
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	99.97
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	99.97
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	99.97
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	99.96
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.86
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.85
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.8
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.59
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.5
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.44
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.34
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.32
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.32
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.31
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.17
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.11
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.07
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.99
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.98
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.8
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.42
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.3
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.99
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.9
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.69
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.68
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.64
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	86.91
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.46

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=5.7e-39  Score=286.50  Aligned_cols=167  Identities=50%  Similarity=0.793  Sum_probs=156.9

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGT   87 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (426)
                      +.|++|||||+|+++++|+|+||||.+.||+||+||++||+++.+....+|.++|+++.||||+++++||+|++..++|+
T Consensus         1 ~~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~   80 (172)
T d2igva1           1 MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGT   80 (172)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CCCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCC
Confidence            46899999999999999999999999999999999999999988888888999999999999999999999999988999


Q ss_pred             CCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102          88 GGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF  167 (426)
Q Consensus        88 ~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~  167 (426)
                      ++.++++..|++|.....|+.     +|+              ||||+.   +       |+  +++||||||++     
T Consensus        81 ~~~~~~~~~~~~e~~~~~~~~-----~G~--------------lsma~~---~-------~~--~~~sqFfIt~~-----  124 (172)
T d2igva1          81 GGESIYGEKFPDENFKEKHTG-----PGV--------------LSMANA---G-------PN--TNGSQFFLCTV-----  124 (172)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBSSCEEEESS-----
T ss_pred             CCcccCCCccCccccccccCC-----CcE--------------EEEeec---C-------CC--CcCceeEeeec-----
Confidence            999999999999988888888     899              999999   8       88  99999999999     


Q ss_pred             cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102         168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR  247 (426)
Q Consensus       168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi  247 (426)
                        ++| +||+                                                             .|++||+|+
T Consensus       125 --~~~-~ld~-------------------------------------------------------------~~~vFG~Vv  140 (172)
T d2igva1         125 --KTE-WLDG-------------------------------------------------------------KHVVFGRVV  140 (172)
T ss_dssp             --CCG-GGTT-------------------------------------------------------------TSCEEEEEE
T ss_pred             --CCc-ccCC-------------------------------------------------------------ceeEEEEEe
Confidence              999 9999                                                             999999999


Q ss_pred             ccccHHHHHhhchhhCCcccccchhhh
Q psy6102         248 QGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       248 eGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      +||+++++|+...+..++|...+.|..
T Consensus       141 ~Gmdvl~~I~~~~~~~g~P~~~i~I~~  167 (172)
T d2igva1         141 EGLDVVKAVESNGSQSGKPVKDCMIAD  167 (172)
T ss_dssp             ECHHHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             ccHHHHHHHHcCCCCCCCCCCCeEEEe
Confidence            999999999998888889988776654

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=273.85  Aligned_cols=158  Identities=46%  Similarity=0.739  Sum_probs=146.6

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG   89 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (426)
                      ||+|||||+|++++.|+|+|+||.+.||+||+||++||++.+       .++|+|+.||||+|+|+||+|++...++.++
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~-------~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~   73 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK-------GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGG   73 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhcc-------ccccCCcEEEEEEEeeeEEeeeccCCCCCCC
Confidence            789999999999999999999999999999999999998643       4789999999999999999999998888899


Q ss_pred             ccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccC
Q psy6102          90 ESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTN  169 (426)
Q Consensus        90 ~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~  169 (426)
                      .+.++..++++....+|+.     +|+              |||++.   +       |+  +++|||||+++       
T Consensus        74 ~~~~~~~~~~~~~~~~~~~-----~G~--------------ls~~~~---~-------~~--s~~sqFfI~~~-------  115 (161)
T d2r99a1          74 KSIYGKKFDDENFILKHTG-----PGL--------------LSMANS---G-------PN--TNGSQFFLTCD-------  115 (161)
T ss_dssp             CBTTBSCBCCCCCCSCCCS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS-------
T ss_pred             ccccCcccccccccccccc-----cee--------------eeeccc---C-------CC--CcCcceEeccC-------
Confidence            9999998888888999998     999              999999   8       89  99999999999       


Q ss_pred             chhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcc
Q psy6102         170 NCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQG  249 (426)
Q Consensus       170 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieG  249 (426)
                      +++ +||+                                                             .|++||+|++|
T Consensus       116 ~~~-~Ldg-------------------------------------------------------------~~tvFG~Vv~G  133 (161)
T d2r99a1         116 KTD-WLDG-------------------------------------------------------------KHVVFGEVTEG  133 (161)
T ss_dssp             CCG-GGTT-------------------------------------------------------------TSCEEEEEEEC
T ss_pred             Ccc-ccCC-------------------------------------------------------------cceEEEEEeeh
Confidence            999 9999                                                             99999999999


Q ss_pred             ccHHHHHhhchhhCCcccccchhhh
Q psy6102         250 FGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       250 ldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      ++++++|+.....+++|..++.|.+
T Consensus       134 ~dvl~~I~~~~~~~~~P~~~i~I~~  158 (161)
T d2r99a1         134 LDVLRQIEAQGSKDGKPKQKVIIAD  158 (161)
T ss_dssp             HHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             HHHHHHHHccCCCCCcCCCCEEEEe
Confidence            9999999987778888988776654

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.4e-37  Score=275.48  Aligned_cols=165  Identities=48%  Similarity=0.744  Sum_probs=152.1

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      .|++|||||+|++|+.|+|+||||++.||+||+||++||+++... ...+.+||+|+.||||+++|+||+|+...+++++
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~-~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~   80 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEEC-TTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhcccccc-ccCccCccCcccceEEEeCceEEecCccCCCCCC
Confidence            589999999999999999999999999999999999999976533 2357899999999999999999999999888999


Q ss_pred             CccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          89 GESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      +...++..|++|.+.+.|+.     +|+              |||++.   +       |+  +++||||||++      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-----~G~--------------lsma~~---~-------~~--s~~sqFfIt~~------  123 (170)
T d1qnga_          81 GESIYGRSFTDENFNMKHDQ-----PGL--------------LSMANA---G-------PN--TNSSQFFITLV------  123 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS------
T ss_pred             CcccCCCccccccccccCCC-----CeE--------------EEEeec---C-------CC--CccccceeccC------
Confidence            99999999999999999998     999              999999   8       89  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       ++| +||+                                                             .|++||+|++
T Consensus       124 -~~~-~Ld~-------------------------------------------------------------~~~vFG~Vv~  140 (170)
T d1qnga_         124 -PCP-WLDG-------------------------------------------------------------KHVVFGKVIE  140 (170)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -Ccc-cccc-------------------------------------------------------------cccEEeEEec
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchhhCCcccccchhhh
Q psy6102         249 GFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       249 Gldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      ||+++++|+...+.++.|..++.|..
T Consensus       141 Gmdvl~~I~~~~~~~g~P~~~i~I~~  166 (170)
T d1qnga_         141 GMNVVREMEKEGAKSGYVKRSVVITD  166 (170)
T ss_dssp             CHHHHHHHHTTCCTTCCCSSCEEEEE
T ss_pred             cHHHHHHHHhcCCCCcCCccCEEEEe
Confidence            99999999998888888888777654

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-37  Score=272.46  Aligned_cols=159  Identities=45%  Similarity=0.747  Sum_probs=147.7

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      |||+|||||+|+++++|+|+||||++.||+||+||++||++++       ..+|+|+.||||+++|+||+|++...++++
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~-------~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~   73 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-------GFGYKGSTFHRVIPSFMCQAGDFTNHNGTG   73 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCC-------CcccCCcEEEEecccceEecCCccCCCCCC
Confidence            7999999999999999999999999999999999999998754       357999999999999999999998888899


Q ss_pred             CccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          89 GESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      +.+.++..++++.+...|+.     +|+              ||||+.   +       |+  +++|||||++.      
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~-----~G~--------------lsma~~---~-------~~--s~~sqFfi~~~------  116 (164)
T d2z6wa1          74 GKSIYGSRFPDENFTLKHVG-----PGV--------------LSMANA---G-------PN--TNGSQFFICTI------  116 (164)
T ss_dssp             CCBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS------
T ss_pred             CccccCCcCCccccccccCC-----ccE--------------EEEecC---C-------CC--CCCcceecccc------
Confidence            99999999999888888887     899              999999   8       88  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       +++ +||+                                                             .|++||+|++
T Consensus       117 -~~~-~ldg-------------------------------------------------------------~ytVFG~Vv~  133 (164)
T d2z6wa1         117 -KTD-WLDG-------------------------------------------------------------KHVVFGHVIE  133 (164)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -CCC-cccc-------------------------------------------------------------cceEEEEecc
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchhhCCcccccchhhh
Q psy6102         249 GFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       249 Gldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      ||+++++|+.+.+.+++|..++.|..
T Consensus       134 G~dvl~~I~~~~~~~~~P~~~i~I~~  159 (164)
T d2z6wa1         134 GMDVVKKIESFGSKSGRTSKKIVITD  159 (164)
T ss_dssp             CHHHHHHHHHTCCTTSCCSSCEEEEE
T ss_pred             cHHHHHHHHhCCCCCCCCCCCEEEEe
Confidence            99999999999998889988877654

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.9e-37  Score=278.22  Aligned_cols=172  Identities=53%  Similarity=0.818  Sum_probs=157.7

Q ss_pred             cccccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCC-CCCccccccCCcccccccccEEeeCcc
Q psy6102           3 KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSHFHRIIPQFMIQGGDI   81 (426)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~-~~~k~~~y~~~~f~rv~~~~~iq~G~~   81 (426)
                      ..+..+.||+|||||+|+++++|+|+|+||.+.||+||+||++||+++.+.+ ..++.+||+|+.||||+++++||+|+.
T Consensus         7 ~~~~~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~   86 (195)
T d1ihga2           7 AKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDF   86 (195)
T ss_dssp             SSSSCTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCT
T ss_pred             CCCCCCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCc
Confidence            3456778999999999999999999999999999999999999999876654 456789999999999999999999999


Q ss_pred             ccCCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEe
Q psy6102          82 TNFNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTV  161 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~  161 (426)
                      ....|+++...++..|++|.....|+.     +|+              |+|++.   +       |+  +++||||||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~G~--------------lsm~~~---~-------~~--s~~SqFfItl  135 (195)
T d1ihga2          87 SNQNGTGGESIYGEKFEDENFHYKHDK-----EGL--------------LSMANA---G-------SN--TNGSQFFITT  135 (195)
T ss_dssp             TTSSSSCCCBTTBSCBCCCCCCBCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEES
T ss_pred             cCCCCCCCccCCCCcccccccCcccCc-----ceE--------------Eeeeec---C-------CC--CCCceeEeec
Confidence            888888998889999999999999988     899              999999   8       89  9999999999


Q ss_pred             eccccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccc
Q psy6102         162 SFLNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNG  241 (426)
Q Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (426)
                      +       +++ +||+                                                             +|+
T Consensus       136 ~-------~~~-~LDg-------------------------------------------------------------~yt  146 (195)
T d1ihga2         136 V-------PTP-HLDG-------------------------------------------------------------KHV  146 (195)
T ss_dssp             S-------CCG-GGTT-------------------------------------------------------------TSC
T ss_pred             c-------CCc-ccCC-------------------------------------------------------------cce
Confidence            9       999 9999                                                             999


Q ss_pred             eechhhccccHHHHHhhchhhCCcccccchhhh
Q psy6102         242 IFGCVRQGFGVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       242 vFG~VieGldvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      +||+|++||+++++|+.+.+.+++|...+.|.+
T Consensus       147 VFG~Vv~Gmdvl~~I~~~~t~~~~P~~~i~I~~  179 (195)
T d1ihga2         147 VFGQVIKGMGVAKILENVEVKGEKPAKLCVIAE  179 (195)
T ss_dssp             EEEEEEECHHHHHHHHTSCEETTEESSCEEEEE
T ss_pred             EEEEEecCHHHHHHHHcCCCCCCCcCCCeEEEE
Confidence            999999999999999999988888888776654

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=1.3e-36  Score=271.81  Aligned_cols=167  Identities=43%  Similarity=0.709  Sum_probs=153.0

Q ss_pred             CCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCC-CCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~-~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      +.|++|||||+|++++.|+|+||||++.||+||+||+.||+++.+.+ ..+|.+||+++.||||+++++||+|+...+++
T Consensus         1 ~~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~   80 (174)
T d1a33a_           1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG   80 (174)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCC
Confidence            36899999999999999999999999999999999999999987665 44678999999999999999999999998889


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      +++.+.++..+.++....+|++     +|+              |||++.   +       |+  +++|||||+++    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-----~g~--------------l~~~~~---~-------~~--s~~sqFfI~~~----  125 (174)
T d1a33a_          81 TGGESIYGGMFDDEEFVMKHDE-----PFV--------------VSMANK---G-------PN--TNGSQFFITTT----  125 (174)
T ss_dssp             SCCCCTTSSCBCCCCSCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS----
T ss_pred             CCCCCccCccccccccccccCc-----cee--------------eeeecc---C-------CC--CCCcccccccC----
Confidence            9988888887788888888988     899              999999   8       89  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         ++| +||+                                                             .|++||+|
T Consensus       126 ---~~p-~ld~-------------------------------------------------------------~~~vFG~V  140 (174)
T d1a33a_         126 ---PAP-HLNN-------------------------------------------------------------IHVVFGKV  140 (174)
T ss_dssp             ---CCG-GGTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---Ccc-cccc-------------------------------------------------------------cceeEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         247 RQGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ++|++++++|+.+.+ .+++|..++.|..
T Consensus       141 veG~dvl~~I~~~~t~~~~~P~~~i~I~~  169 (174)
T d1a33a_         141 VSGQEVVTKIEYLKTNSKNRPLADVVILN  169 (174)
T ss_dssp             EECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             echHHHHHHHHhCCcCCCCCCCCCEEEEe
Confidence            999999999999998 6788888777654

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=3.7e-36  Score=265.52  Aligned_cols=157  Identities=44%  Similarity=0.718  Sum_probs=145.0

Q ss_pred             ceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCc
Q psy6102          11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGE   90 (426)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (426)
                      ..||||++|+++++|+|+||||++.||+||+||++||+++.+.       +|+|+.||||+|+||||+|++..+++.++.
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF-------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGK   74 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC-------ccCCCEEEEEEecceEecCCCCCCCCCCCc
Confidence            3699999999999999999999999999999999999875532       399999999999999999999988899999


Q ss_pred             cccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102          91 SIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN  170 (426)
Q Consensus        91 ~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~  170 (426)
                      +.++..|.+|...+.|+.     +|+              |||++.   +       |+  +++|||||+++       +
T Consensus        75 ~~~~~~~~~e~~~~~h~~-----~G~--------------vsm~~~---~-------~~--s~~sqF~I~~~-------~  116 (162)
T d2cfea1          75 SIYGAKFADENFQLKHNK-----PGL--------------LSMANA---G-------PN--TNGSQFFITTV-------V  116 (162)
T ss_dssp             BTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBSSCEEEESS-------C
T ss_pred             ccCCCccccccCCCCCCC-----ceE--------------EEEeec---C-------CC--CCCcceEEeec-------C
Confidence            999999999999999988     899              999998   8       89  99999999999       9


Q ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102         171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF  250 (426)
Q Consensus       171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl  250 (426)
                      ++ +||+                                                             .|++||+|++|+
T Consensus       117 ~~-~ld~-------------------------------------------------------------~~~vFG~Vi~G~  134 (162)
T d2cfea1         117 TS-WLDG-------------------------------------------------------------KHVVFGEVIDGM  134 (162)
T ss_dssp             CG-GGTT-------------------------------------------------------------TSCEEEEEEECH
T ss_pred             Cc-cccc-------------------------------------------------------------cceEEEEEEehH
Confidence            99 9999                                                             999999999999


Q ss_pred             cHHHHHhhchhhCCcccccchhhh
Q psy6102         251 GVAREVSYVEAENDKPLVLNQMED  274 (426)
Q Consensus       251 dvl~~I~~l~~~~~~P~~~i~ilk  274 (426)
                      +++++|+...+.+++|.+++.|.+
T Consensus       135 dvl~~I~~~~~~~~~P~~~i~I~~  158 (162)
T d2cfea1         135 NVVKAIEAEGSGSGKPRSRIEIAK  158 (162)
T ss_dssp             HHHHHHHTTCCTTSCCSSCEEEEE
T ss_pred             HHHHHHhcCCCCCCCCCCCeEEEe
Confidence            999999988778899988877654

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2.6e-35  Score=265.88  Aligned_cols=169  Identities=38%  Similarity=0.676  Sum_probs=151.8

Q ss_pred             ccccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCcccc
Q psy6102           4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITN   83 (426)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~   83 (426)
                      -+.++.||+|||||+|++++.|+|+||||.+.||+||+||++||+++++.+  .+...|+|+.||||+++|+||||+...
T Consensus        10 ~~~~~~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~--~~~~~Y~g~~f~rv~~~~~i~~G~~~~   87 (186)
T d1z81a1          10 LLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFIN   87 (186)
T ss_dssp             GSSSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTT
T ss_pred             cccCCCCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccC--CcccccCCCeeeeeecceeeecCCccc
Confidence            356778999999999999999999999999999999999999999866432  344569999999999999999999988


Q ss_pred             CCCCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeec
Q psy6102          84 FNGTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSF  163 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~  163 (426)
                      .++.+..+.+|..++++....+|+.     +|+              ++|++.   +       |+  +++||||||++ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~G~--------------~~~~~~---g-------~~--~~~sqFfIt~~-  135 (186)
T d1z81a1          88 HNGSGSLSIYGEKFDDENFDIKHDK-----EGL--------------LSMANS---G-------PN--TNGCQFFITTK-  135 (186)
T ss_dssp             SSSCCCCBTTBSCCCCCCCCSCCCS-----TTE--------------EEECCS---S-------SS--CCCSCEEEESS-
T ss_pred             cCCcccccccCCcccccccccccCC-----Ccc--------------chhhhc---C-------CC--ccccceeeecc-
Confidence            8888888889999999999999998     999              999999   8       89  99999999999 


Q ss_pred             cccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhccccccee
Q psy6102         164 LNTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIF  243 (426)
Q Consensus       164 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vF  243 (426)
                            +++ +||+                                                             +|++|
T Consensus       136 ------~~p-~Ldg-------------------------------------------------------------~~tVF  147 (186)
T d1z81a1         136 ------KCE-WLDG-------------------------------------------------------------KNVVF  147 (186)
T ss_dssp             ------CCG-GGBT-------------------------------------------------------------TBCEE
T ss_pred             ------ccc-ccCC-------------------------------------------------------------CccEE
Confidence                  999 9999                                                             99999


Q ss_pred             chhhcc--ccHHHHHhhchh--hCCcccccchhhh
Q psy6102         244 GCVRQG--FGVAREVSYVEA--ENDKPLVLNQMED  274 (426)
Q Consensus       244 G~VieG--ldvl~~I~~l~~--~~~~P~~~i~ilk  274 (426)
                      |+|++|  |+++++|+.+++  ..++|..++.+.+
T Consensus       148 G~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~~  182 (186)
T d1z81a1         148 GRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVE  182 (186)
T ss_dssp             EEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEE
T ss_pred             EEEEeCccHHHHHHHhccCCCCCCCccCCCEEEEe
Confidence            999998  999999999888  3577887776654

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=2.7e-35  Score=264.81  Aligned_cols=158  Identities=46%  Similarity=0.699  Sum_probs=145.9

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG   89 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (426)
                      ..+|||||+|+++++|+|+||||.+.||+||+||++||++++       .++|+|+.||||+++++||+|++...+++++
T Consensus         7 t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k-------~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~   79 (182)
T d2rmca_           7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK-------GYGYKGSIFHRVIKDFMIQGGDFTARDGTGG   79 (182)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTT-------SCSSTTCBEEEEETTTEEEECCCSSSSSSCC
T ss_pred             CCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCC-------CccccCceeeeeecCceEEcCCCCCCCCCCC
Confidence            468999999999999999999999999999999999998754       3579999999999999999999988889999


Q ss_pred             ccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccC
Q psy6102          90 ESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTN  169 (426)
Q Consensus        90 ~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~  169 (426)
                      .++++..+++++....|+.     +|+              |||++.   +       |+  +++|||||+++       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-----~G~--------------lsma~~---~-------~~--s~~sqFfI~~~-------  121 (182)
T d2rmca_          80 MSIYGETFPDENFKLKHYG-----IGW--------------VSMANA---G-------PD--TNGSQFFITLT-------  121 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS-------
T ss_pred             CCCcCCcccccccccccCC-----Ccc--------------Eehhhc---C-------CC--ccCcccccccc-------
Confidence            9999999999988888888     899              999999   8       88  99999999999       


Q ss_pred             chhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcc
Q psy6102         170 NCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQG  249 (426)
Q Consensus       170 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieG  249 (426)
                      +++ +||+                                                             .|++||+|++|
T Consensus       122 ~~~-~ld~-------------------------------------------------------------~~~vFG~Vi~G  139 (182)
T d2rmca_         122 KPT-WLDG-------------------------------------------------------------KHVVFGKVLDG  139 (182)
T ss_dssp             CCG-GGTT-------------------------------------------------------------TSCEEEEEEEC
T ss_pred             CCc-hhcc-------------------------------------------------------------cceEEEEEech
Confidence            999 9999                                                             99999999999


Q ss_pred             ccHHHHHhhchh-hCCcccccchhhh
Q psy6102         250 FGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       250 ldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ++++++|+.+.+ .+++|...+.|.+
T Consensus       140 ~dvl~~I~~~~~~~~~~P~~~v~I~~  165 (182)
T d2rmca_         140 MTVVHSIELQATDGHDRPLTDCTIVN  165 (182)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred             HHHHHHHHhCCcCCCCcCCCCeEEEE
Confidence            999999999998 6788887776643

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=2.2e-35  Score=265.50  Aligned_cols=158  Identities=41%  Similarity=0.632  Sum_probs=145.2

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG   89 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (426)
                      ..+|||||+|+++++|+|+||||.+.||+||+||++||++++       .++|+|+.||||+++|+||+|+...++++|+
T Consensus         6 t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~-------~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~   78 (182)
T d1h0pa_           6 TDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPK-------GEGYPGSKFHRVIADFMIQGGDFTRGDGTGG   78 (182)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCT-------TTSSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcc-------cCCcCCceEEEEEecceEEcCCCCCCCCCCC
Confidence            468999999999999999999999999999999999998643       4689999999999999999999998899999


Q ss_pred             ccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccC
Q psy6102          90 ESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTN  169 (426)
Q Consensus        90 ~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~  169 (426)
                      .+.++..+.++.....|+.     +|+              ++|++.   +       |+  +++|||||+++       
T Consensus        79 ~~~~~~~~~~~~~~~~~~~-----~G~--------------~~~a~~---g-------~~--s~~sqFfIt~~-------  120 (182)
T d1h0pa_          79 RSIYGEKFADENFKLKHYG-----AGW--------------LSMANA---G-------AD--TNGSQFFITTV-------  120 (182)
T ss_dssp             CBTTBSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS-------
T ss_pred             CCCCCCccCcccccccccC-----Cce--------------eeeccc---C-------CC--CcCcccccccc-------
Confidence            9999999999988888888     899              999999   8       88  99999999999       


Q ss_pred             chhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcc
Q psy6102         170 NCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQG  249 (426)
Q Consensus       170 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieG  249 (426)
                      +++ +||+                                                             .|++||+|++|
T Consensus       121 ~~~-~ldg-------------------------------------------------------------~ytvFG~Vi~G  138 (182)
T d1h0pa_         121 KTP-WLDG-------------------------------------------------------------RHVVFGKILEG  138 (182)
T ss_dssp             CCG-GGTT-------------------------------------------------------------TSCEEEEEEEC
T ss_pred             ccc-cccc-------------------------------------------------------------cceeEEEEeeh
Confidence            999 9999                                                             99999999999


Q ss_pred             ccHHHHHhhchh-hCCcccccchhhh
Q psy6102         250 FGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       250 ldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ++++++|+.+.+ ..++|...+.+.+
T Consensus       139 ~dvl~~I~~~~~~~~~~P~~~v~I~~  164 (182)
T d1h0pa_         139 MDVVRKIEQTEKLPGDRPKQDVIIAA  164 (182)
T ss_dssp             HHHHHHHHTSCEETTTEESSCEEEEE
T ss_pred             HHHHHHHHhcCCCCCCCCCCCEEEEE
Confidence            999999999998 5567887766643

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=262.44  Aligned_cols=166  Identities=48%  Similarity=0.765  Sum_probs=146.0

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      .+.||+|||||+|+++++|+|+|+||++.||+||+||++||++++.  ..++...|+++.||||+++|++|+|++..+.+
T Consensus         3 ~~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~   80 (173)
T d1qoia_           3 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG   80 (173)
T ss_dssp             SCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCE--ETTEECSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhccccc--ccCCCCCcCCcccceeccceeeccCCcccCCc
Confidence            4578999999999999999999999999999999999999985431  11122239999999999999999999987777


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      .+....++..|+++.+...|+.     +|+              |+|++.   +       |+  +++|||||+++    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-----~G~--------------l~ma~~---~-------~~--s~~sqFfI~~~----  125 (173)
T d1qoia_          81 TGVASIYRGPFADENFKLRHSA-----PGL--------------LSMANS---G-------PS--TNGCQFFITCS----  125 (173)
T ss_dssp             CCCCCTTSSCBCCCCCCSCCCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS----
T ss_pred             ceeecccCCcccccccccccCC-----CcE--------------EEeeec---C-------CC--CCCceeeeecc----
Confidence            7777777888888888888888     899              999999   8       89  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +.+ +||+                                                             +|++||+|
T Consensus       126 ---~~~-~ldg-------------------------------------------------------------~~tvFG~V  140 (173)
T d1qoia_         126 ---KCD-WLDG-------------------------------------------------------------KHVVFGKI  140 (173)
T ss_dssp             ---CCG-GGTT-------------------------------------------------------------TSCEEEEE
T ss_pred             ---CCc-cCCc-------------------------------------------------------------ceeEEEEE
Confidence               999 9999                                                             99999999


Q ss_pred             hccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         247 RQGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       247 ieGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ++|++++++|+.+++ .+++|..++.|.+
T Consensus       141 i~G~dvl~~I~~~~t~~~~~P~~~i~I~~  169 (173)
T d1qoia_         141 IDGLLVMRKIENVPTGPNNKPKLPVVISQ  169 (173)
T ss_dssp             EECHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             echHHHHHHHHhCCcCCCCcCCCCEEEEc
Confidence            999999999999998 6788888877654

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=6.2e-35  Score=258.75  Aligned_cols=158  Identities=46%  Similarity=0.771  Sum_probs=141.1

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      -.++|||||++++++.|+|+||||.+.||+||+||++||+++.+.+       |+|+.||||+++++||+|++...++++
T Consensus         4 ~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~-------Y~g~~f~rv~~~~~iq~G~~~~~~~~~   76 (166)
T d1xo7a_           4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVIRNFMIQGGDFTNFDGTG   76 (166)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-------STTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhccccccc-------ccCcEEEEEcCCCEEEeCCCCCCCCCC
Confidence            4679999999999999999999999999999999999998865433       999999999999999999999888999


Q ss_pred             CccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          89 GESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        89 ~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      +.+.++..++++.....| .     +|+              |+|++.   |       |+  +++|||||+++      
T Consensus        77 ~~~~~~~~~~~~~~~~~~-~-----~G~--------------l~~a~~---g-------~~--s~~sqFfIt~~------  118 (166)
T d1xo7a_          77 GKSIYGTRFDDENLKIKH-F-----VGA--------------VSMANA---G-------PN--SNGSQFFVTTA------  118 (166)
T ss_dssp             CCBTTBSCBCCCCCCSCC-C-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS------
T ss_pred             CCCCCCcccccccccccc-c-----ccc--------------eeeccc---C-------CC--CCCCeeEEccC------
Confidence            988888877777654443 4     799              999999   8       99  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       +++ +||+                                                             +|++||+|++
T Consensus       119 -~~~-~ld~-------------------------------------------------------------~~~vfG~Vi~  135 (166)
T d1xo7a_         119 -PTP-WLDG-------------------------------------------------------------RHVVFGKVVE  135 (166)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -Ccc-ccCc-------------------------------------------------------------cceeeeEEee
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchh-hCCcccccchhhh
Q psy6102         249 GFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       249 Gldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      |++++++|+.+.+ .+++|..++.|.+
T Consensus       136 G~~vl~~I~~~~~~~~~~P~~~i~I~~  162 (166)
T d1xo7a_         136 GMDVVKKVENTKTGLNDKPKKAVKIND  162 (166)
T ss_dssp             CHHHHHHHHTSCBCGGGCBSSCEEEEE
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCEEEEe
Confidence            9999999999988 6678887776643

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-34  Score=253.06  Aligned_cols=150  Identities=41%  Similarity=0.597  Sum_probs=136.9

Q ss_pred             CCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCC
Q psy6102           9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTG   88 (426)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (426)
                      .+|+|+|+|++     |+|+||||++.||+||+||++||+          .+||+|+.||||+++|||||||+. +++++
T Consensus        10 ~~p~v~~~T~~-----G~i~ieL~~~~aP~tv~nF~~L~~----------~g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~   73 (166)
T d1xwna1          10 QPPNVYLETSM-----GIIVLELYWKHAPKTCKNFAELAR----------RGYYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCCEEEEEESS-----CEEEEEECTTTCHHHHHHHHHHHH----------HTSSTTCCEEEEETTTEEEECCST-TTTSS
T ss_pred             CCCEEEEEECc-----eeEEEEEcCCCChHHHHHHHHHHh----------cCCcCceeeeEEcccEEEEeCCCC-CCCCC
Confidence            46899999997     999999999999999999999995          578999999999999999999996 67888


Q ss_pred             CccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccc
Q psy6102          89 GESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTF  167 (426)
Q Consensus        89 ~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~  167 (426)
                      +.+.++..+++|. ..+.|+.     +|+              |||++.   +       |+  +++|||||+++     
T Consensus        74 ~~~~~~~~~~~e~~~~~~~~~-----~G~--------------lsm~~~---~-------~~--s~~sqFfI~~~-----  117 (166)
T d1xwna1          74 GASIYGKQFEDELHPDLKFTG-----AGI--------------LAMANA---G-------PD--TNGSQFFVTLA-----  117 (166)
T ss_dssp             CCCSSCSCCCCCCCTTCCSCS-----SSE--------------EEEEEE---E-------TT--EEEEEEEEECS-----
T ss_pred             CccCCCCccccccCCCCCCCC-----CeE--------------EEeccc---C-------CC--CCCcceEEeec-----
Confidence            8999999999985 4677777     899              999999   8       89  99999999999     


Q ss_pred             cCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhh
Q psy6102         168 TNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVR  247 (426)
Q Consensus       168 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vi  247 (426)
                        +.+ +||+                                                             .|++||+|+
T Consensus       118 --~~~-~ld~-------------------------------------------------------------~~tvFG~Vi  133 (166)
T d1xwna1         118 --PTQ-WLDG-------------------------------------------------------------KHTIFGRVC  133 (166)
T ss_dssp             --CCS-TTTT-------------------------------------------------------------TSEEEEECS
T ss_pred             --Chh-hccc-------------------------------------------------------------cceEEEEEe
Confidence              888 9999                                                             999999999


Q ss_pred             ccccHHHHHhhchh-hCCcccccchhhh
Q psy6102         248 QGFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       248 eGldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      +|++++++|+.+++ .+++|...+.|.+
T Consensus       134 ~G~dvl~~I~~~~t~~~~~P~~~I~I~~  161 (166)
T d1xwna1         134 QGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (166)
T ss_dssp             SCHHHHHHHHHSCBCSSSCBSSCCCEEE
T ss_pred             chHHHHHHHHhCCCCCCCCCCCCeEEEE
Confidence            99999999999998 6788888877754

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.98  E-value=6.6e-33  Score=242.88  Aligned_cols=146  Identities=35%  Similarity=0.515  Sum_probs=130.4

Q ss_pred             eEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCcc
Q psy6102          12 IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGES   91 (426)
Q Consensus        12 ~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~   91 (426)
                      .|.|+|+     +|+|+||||++.||+||+||++||++          +||+|+.||||+++||||+||+. +.+.++.+
T Consensus         3 ~~~i~T~-----~G~i~ieL~~~~aP~tv~nF~~l~~~----------g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~   66 (155)
T d2fu0a1           3 SAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSIN----------GYYNNCIFHRVIKHFMVQTGDPS-GDGTGGES   66 (155)
T ss_dssp             EEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCC
T ss_pred             eEEEEEc-----ccEEEEEEcCCCChHHHHHHhhHhhC----------CccccceeeeeeecceeeccCCC-CCCcCCcc
Confidence            3556665     59999999999999999999999964          67999999999999999999996 67788899


Q ss_pred             ccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102          92 IYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN  170 (426)
Q Consensus        92 ~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~  170 (426)
                      .+|..|++|.. .+.|.+     +|+              ++|++.   +       |+  +++|||||+++       +
T Consensus        67 ~~~~~~~~~~~~~~~~~~-----~~~--------------~~~~~~---~-------~~--s~~sqFfI~~~-------~  108 (155)
T d2fu0a1          67 IWGNEFEDEFFDHLNHSK-----PFM--------------VSMANC---G-------PN--TNGSQFFITTV-------P  108 (155)
T ss_dssp             TTSSCBCCCCBTTBCSSS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS-------C
T ss_pred             cCCCccccccccccccCC-----ccE--------------EEeccc---C-------CC--CCCccceeccc-------C
Confidence            99999999975 567777     788              999988   8       89  99999999999       9


Q ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102         171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF  250 (426)
Q Consensus       171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl  250 (426)
                      .| +||+                                                             .|++||+|++||
T Consensus       109 ~~-~ld~-------------------------------------------------------------~~tvFG~Vi~G~  126 (155)
T d2fu0a1         109 CP-WLDF-------------------------------------------------------------KHTVFGKVTQGS  126 (155)
T ss_dssp             CG-GGTT-------------------------------------------------------------TSCEEEEEEECH
T ss_pred             cc-cccc-------------------------------------------------------------ceEEEEEEeccH
Confidence            99 9999                                                             999999999999


Q ss_pred             cHHHHHhhchh-hCCcccccchhh
Q psy6102         251 GVAREVSYVEA-ENDKPLVLNQME  273 (426)
Q Consensus       251 dvl~~I~~l~~-~~~~P~~~i~il  273 (426)
                      +++++|+.+++ ..++|..++.|.
T Consensus       127 ~vv~~I~~~~t~~~~~P~~~i~I~  150 (155)
T d2fu0a1         127 KIVLDIEKVRTDKRDKPLEDIKIL  150 (155)
T ss_dssp             HHHHHHHTSCBCTTSCBSSCCBEE
T ss_pred             HHHHHHHhCCCCCCCCcCCCcEEE
Confidence            99999999998 678888777664

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=99.98  E-value=2.7e-33  Score=249.18  Aligned_cols=155  Identities=44%  Similarity=0.679  Sum_probs=109.2

Q ss_pred             ceEEEEEE-----ECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCC
Q psy6102          11 YIVFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus        11 ~~~~~~~~-----~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ++|||||.     ++.|++|+|+||||++.||+||+||++||+++.+.       .|+++.||||+++||||+|++..++
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~-------~y~~~~f~ri~~~~~iq~G~~~~~~   74 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE-------GYRESTFHRIIPNFMIQGGDFTRGN   74 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTT-------SSTTCBCCEEETTTEEEECC-----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccc-------cccCceeeEEEEEEeeEcCCccCCC
Confidence            68999998     66789999999999999999999999999875432       3999999999999999999998888


Q ss_pred             CCCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccc
Q psy6102          86 GTGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLN  165 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~  165 (426)
                      ++++.+..+..+.++...+.|+.     +|+              ||||+.   +       |+  +++|||||+++   
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~-----~G~--------------lsma~~---~-------~~--s~~sqFfI~~~---  120 (171)
T d2c3ba1          75 GTGGRSIYGDKFADENFSRKHDK-----KGI--------------LSMANA---G-------PN--TNGSQFFITTA---  120 (171)
T ss_dssp             -----------------CHHHHH-----TCE--------------EEEC---------------------CEEEECS---
T ss_pred             CCCCCcCCCCccccccccccCCC-----Cce--------------EEeeec---C-------CC--CCCcceeeccC---
Confidence            88888888888888888888887     899              999999   8       89  99999999999   


Q ss_pred             cccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceech
Q psy6102         166 TFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGC  245 (426)
Q Consensus       166 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~  245 (426)
                          +.| +||+                                                             .|++||+
T Consensus       121 ----~~~-~ldg-------------------------------------------------------------~~tvFG~  134 (171)
T d2c3ba1         121 ----VTS-WLDG-------------------------------------------------------------KHVVFGE  134 (171)
T ss_dssp             ----CCT-TCCS-------------------------------------------------------------CCEEEEE
T ss_pred             ----Ccc-ccCC-------------------------------------------------------------CceEEEE
Confidence                999 9999                                                             9999999


Q ss_pred             hh--ccccHHHHHhhchhhCC--cccccchh
Q psy6102         246 VR--QGFGVAREVSYVEAEND--KPLVLNQM  272 (426)
Q Consensus       246 Vi--eGldvl~~I~~l~~~~~--~P~~~i~i  272 (426)
                      |+  +|++++++|+.+.+..+  .|...+.|
T Consensus       135 Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I  165 (171)
T d2c3ba1         135 VADEKSYSVVKEIEALGSSSGSVRSNTRPKI  165 (171)
T ss_dssp             ECSHHHHHHHHHHHTTCCTTSCCCSSSCCEE
T ss_pred             EEeccCHHHHHHHHcCCCCCCCcCCCCCEEE
Confidence            98  49999999999888543  34444444

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-32  Score=242.40  Aligned_cols=145  Identities=38%  Similarity=0.541  Sum_probs=127.2

Q ss_pred             EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102          13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI   92 (426)
Q Consensus        13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~   92 (426)
                      |.|+|++     |+|+||||++.||+||+||++||++          +||+|+.||||+++|||||||+. ..+.++...
T Consensus         3 V~~~T~~-----G~i~ieL~~~~aP~tv~nF~~L~~~----------g~Y~~~~f~rv~~~~~iq~Gd~~-~~~~~~~~~   66 (159)
T d2ok3a1           3 VTLHTDV-----GDIKIEVFCERTPKTCENFLALCAS----------NYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSI   66 (159)
T ss_dssp             EEEEETT-----EEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCT
T ss_pred             EEEEeCC-----eEEEEEEcCCCChHHHHHHHHHHhh----------hcccceeEecccCCeEEEeCCcc-ccCCCCccc
Confidence            6666664     9999999999999999999999965          67999999999999999999997 456666777


Q ss_pred             cCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCch
Q psy6102          93 YGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNC  171 (426)
Q Consensus        93 ~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~  171 (426)
                      ++..+++|.. .++|++     +|+              |||++.   +       |+  +++||||||++       +.
T Consensus        67 ~~~~~~~e~~~~~~~~~-----~G~--------------lsma~~---~-------~~--s~~sqFfIt~~-------~~  108 (159)
T d2ok3a1          67 WGKKFEDEYSEYLKHNV-----RGV--------------VSMANN---G-------PN--TNGSQFFITYG-------KQ  108 (159)
T ss_dssp             TSSCBCCCCCTTCCSCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS-------CC
T ss_pred             CCCccccccccCCCCCC-----CeE--------------EEEeeC---C-------CC--CcCcceEeeec-------cC
Confidence            8888898854 578888     899              999999   8       88  99999999999       99


Q ss_pred             hhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhcccc
Q psy6102         172 EIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFG  251 (426)
Q Consensus       172 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGld  251 (426)
                      | ++|+                                                             .|++||+|++|++
T Consensus       109 p-~ld~-------------------------------------------------------------~~tvFG~V~~G~~  126 (159)
T d2ok3a1         109 P-HLDM-------------------------------------------------------------KYTVFGKVIDGLE  126 (159)
T ss_dssp             G-GGTT-------------------------------------------------------------TSCEEEEEEECHH
T ss_pred             c-cccc-------------------------------------------------------------ceEEEEecccchH
Confidence            9 9999                                                             9999999999999


Q ss_pred             HHHHHhhchhh--CCcccccchhh
Q psy6102         252 VAREVSYVEAE--NDKPLVLNQME  273 (426)
Q Consensus       252 vl~~I~~l~~~--~~~P~~~i~il  273 (426)
                      ++++|+.+.+.  .++|..++.|.
T Consensus       127 vl~~I~~~~~~~~~~~P~~~i~I~  150 (159)
T d2ok3a1         127 TLDELEKLPVNEKTYRPLNDVHIK  150 (159)
T ss_dssp             HHHHHHTCCBCTTTCCBSSCCBEE
T ss_pred             HHHHHHcCcCCCCCCCcCCCcEEE
Confidence            99999999883  46687766554

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=9.1e-33  Score=244.66  Aligned_cols=155  Identities=26%  Similarity=0.353  Sum_probs=129.1

Q ss_pred             cCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCC
Q psy6102           7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNG   86 (426)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (426)
                      .+|+++|.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+++||||+|++....+
T Consensus         1 ~~g~~~V~l~T~~-----G~i~ieL~~~~aP~tv~nF~~L~~----------~~~Y~g~~fhRv~~~~~iq~G~~~~~~~   65 (166)
T d1v9ta_           1 AKGDPHVLLTTSA-----GNIELELDKQKAPVSVQNFVDYVN----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ   65 (166)
T ss_dssp             CCCSCEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEESSBCTTCC
T ss_pred             CCCCCEEEEEECC-----eeEEEEEeCCCChHHHHHHHHHhh----------CCccccceeeEEEEEeecccCCcCCccc
Confidence            3689999999986     999999999999999999999996          4779999999999999999999975555


Q ss_pred             CCCccccCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccc
Q psy6102          87 TGGESIYGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNT  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~  166 (426)
                      .++   +++.|++|.....++.     +|.              |+|++.   +.      |+  +++|||||+++    
T Consensus        66 ~~~---~~~~~~~e~~~~~~~~-----rg~--------------v~~~~~---~~------~~--s~~sqFfI~~~----  108 (166)
T d1v9ta_          66 QKK---PNPPIKNEADNGLRNT-----RGT--------------IAMART---AD------KD--SATSQFFINVA----  108 (166)
T ss_dssp             BCC---CCCCBCCCGGGSCCCC-----TTE--------------EEECCC---SS------TT--CBCSCEEEESS----
T ss_pred             ccC---CCCCcccccccccccc-----CCE--------------EEEEee---ec------CC--CcccccccccC----
Confidence            444   4788999987666655     799              999987   54      88  99999999999    


Q ss_pred             ccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechh
Q psy6102         167 FTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCV  246 (426)
Q Consensus       167 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~V  246 (426)
                         +.+ +||+.                                                        ..+..|++||+|
T Consensus       109 ---~~~-~ld~~--------------------------------------------------------~~~~~~tvfG~V  128 (166)
T d1v9ta_         109 ---DNA-FLDHG--------------------------------------------------------QRDFGYAVFGKV  128 (166)
T ss_dssp             ---CCG-GGSCC--------------------------------------------------------SSCCCCCEEEEE
T ss_pred             ---Ccc-ccccc--------------------------------------------------------cccCCEEEeeEE
Confidence               888 88871                                                        111268999999


Q ss_pred             hccccHHHHHhhchhhC-----Ccccccchhh
Q psy6102         247 RQGFGVAREVSYVEAEN-----DKPLVLNQME  273 (426)
Q Consensus       247 ieGldvl~~I~~l~~~~-----~~P~~~i~il  273 (426)
                      ++||+++++|+.+++..     ++|..++.|.
T Consensus       129 veG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~  160 (166)
T d1v9ta_         129 VKGMDVADKISQVPTHDVGPYQNVPSKPVVIL  160 (166)
T ss_dssp             EECHHHHHHHHTSCEEEETTEEEEESSCCBEE
T ss_pred             eccHHHHHHHHhCcccCCCCCCCccCCCeEEE
Confidence            99999999999988732     3677666554

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.97  E-value=2.2e-32  Score=242.83  Aligned_cols=149  Identities=36%  Similarity=0.538  Sum_probs=133.0

Q ss_pred             CceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCC
Q psy6102          10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGG   89 (426)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (426)
                      +..|.|+|++     |+|+||||++.||+||+||++||+          .+||+|+.||||+++|+||||++. +.+.++
T Consensus        16 ~~~V~l~T~~-----G~i~IeL~~d~aP~tv~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~g~~~-~~~~~~   79 (169)
T d2b71a1          16 RGYITIYTNL-----GDFEVELYWYHSPKTCLNFYTLCE----------MGFYDNTIFHRVIPNFVIQGGDPT-GTGKGG   79 (169)
T ss_dssp             SCEEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEEEETT-SSSSCC
T ss_pred             ccEEEEEeCc-----eeEEEEEeCCCCcHHHHHHHHHhh----------CCccceeeeccccceeeEeccccc-cccCCC
Confidence            4578888875     999999999999999999999995          578999999999999999999996 556677


Q ss_pred             ccccCCCcCCccc-cccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecccccc
Q psy6102          90 ESIYGPCFEDENF-KLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFT  168 (426)
Q Consensus        90 ~~~~~~~~~~e~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~  168 (426)
                      .+..+..+++|.. .++|.+     +|+              |||++.   +       |+  +++|||||+++      
T Consensus        80 ~~~~~~~~~~e~~~~l~h~~-----~g~--------------ls~~~~---~-------p~--s~~sqFfIt~~------  122 (169)
T d2b71a1          80 KSIYGEYFEDEINKELKHTG-----AGI--------------LSMSNN---G-------PN--TNSSQFFITLA------  122 (169)
T ss_dssp             CBTTBSCBCCCCCTTCCCCS-----TTE--------------EEECCS---S-------TT--CBSSCEEEESS------
T ss_pred             ccccccccccccccccCCCC-----cEE--------------EEhhhC---C-------CC--CCCCEEEEecC------
Confidence            7788888888864 677887     899              999999   8       99  99999999999      


Q ss_pred             CchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhc
Q psy6102         169 NNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQ  248 (426)
Q Consensus       169 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~Vie  248 (426)
                       +.| +||+                                                             .|++||+|++
T Consensus       123 -~~~-~ld~-------------------------------------------------------------~~tvFG~Vv~  139 (169)
T d2b71a1         123 -PLP-HLDG-------------------------------------------------------------KHTIFARVSK  139 (169)
T ss_dssp             -CCG-GGTT-------------------------------------------------------------TSCEEEEEEE
T ss_pred             -Ccc-hhhh-------------------------------------------------------------hcceeeEEec
Confidence             999 9999                                                             9999999999


Q ss_pred             cccHHHHHhhchh-hCCcccccchhhh
Q psy6102         249 GFGVAREVSYVEA-ENDKPLVLNQMED  274 (426)
Q Consensus       249 Gldvl~~I~~l~~-~~~~P~~~i~ilk  274 (426)
                      ||+++++|+.+++ .+++|...+.|.+
T Consensus       140 G~dvl~~I~~~~~~~~~~P~~~i~I~~  166 (169)
T d2b71a1         140 NMTCIENIASVQTTATNKPIFDLKILR  166 (169)
T ss_dssp             CHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             cHHHHHHHHhCCCCCCCCCCCCeEEEE
Confidence            9999999999988 5788988877654

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-32  Score=242.35  Aligned_cols=146  Identities=40%  Similarity=0.589  Sum_probs=130.8

Q ss_pred             eEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCcc
Q psy6102          12 IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGES   91 (426)
Q Consensus        12 ~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~   91 (426)
                      .|.|+|+.     |+|+||||.+.||+||+||++||+          .+||+|+.||||+++||||+|++. .+|+++.+
T Consensus         2 ~v~l~T~~-----G~i~IeL~~~~aP~tv~nF~~L~~----------~~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~   65 (178)
T d1zkca1           2 YVRLHTNK-----GDLNLELHCDLTPKTCENFIRLCK----------KHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGES   65 (178)
T ss_dssp             EEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEECCTT-SSSSCCCB
T ss_pred             EEEEEeCC-----EEEEEEEcCCCChHHHHHHHHHHh----------cCCcCceEeeeccceeEEecCCcc-CCCCCCcc
Confidence            36677765     999999999999999999999996          477999999999999999999986 57899999


Q ss_pred             ccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCc
Q psy6102          92 IYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNN  170 (426)
Q Consensus        92 ~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~  170 (426)
                      .++.+|++|. ..++|+.     +|+              |||++.   +       |+  +++|||||+++       +
T Consensus        66 ~~~~~~~~E~~~~l~~~~-----~G~--------------lsma~~---~-------~~--s~~sqF~It~~-------~  107 (178)
T d1zkca1          66 YWGKPFKDEFRPNLSHTG-----RGI--------------LSMANS---G-------PN--SNRSQFFITFR-------S  107 (178)
T ss_dssp             TTBSCBCCCCCTTCCSCS-----TTE--------------EEECCS---S-------TT--CBCSCEEEESS-------C
T ss_pred             cCCCCcCCccccccCCCC-----CeE--------------EEEeec---C-------CC--Cccceeecccc-------C
Confidence            9999999996 4688888     899              999999   8       88  99999999999       9


Q ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccc
Q psy6102         171 CEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGF  250 (426)
Q Consensus       171 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGl  250 (426)
                      ++ +||+                                                             .|++||+|++|+
T Consensus       108 ~~-~ld~-------------------------------------------------------------~~~vFG~Vv~G~  125 (178)
T d1zkca1         108 CA-YLDK-------------------------------------------------------------KHTIFGRVVGGF  125 (178)
T ss_dssp             CG-GGTT-------------------------------------------------------------TSCEEEEEEECH
T ss_pred             Cc-ccCC-------------------------------------------------------------cceEEEEeeCcH
Confidence            99 9999                                                             999999999999


Q ss_pred             cHHHHHhhchh--hCCcccccchhh
Q psy6102         251 GVAREVSYVEA--ENDKPLVLNQME  273 (426)
Q Consensus       251 dvl~~I~~l~~--~~~~P~~~i~il  273 (426)
                      +++++|+.+.+  .+++|..++.|.
T Consensus       126 dvl~~I~~~~t~~~~~~P~~~v~I~  150 (178)
T d1zkca1         126 DVLTAMENVESDPKTDRPKEEIRID  150 (178)
T ss_dssp             HHHHHHHHSCBCTTTCCBSSCCEEE
T ss_pred             HHHHHHHcCCCCCCCCccCCCeEEE
Confidence            99999999887  457887766553

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.7e-31  Score=234.64  Aligned_cols=152  Identities=23%  Similarity=0.295  Sum_probs=118.1

Q ss_pred             EEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCCCCCCccc
Q psy6102          13 VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFNGTGGESI   92 (426)
Q Consensus        13 ~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~   92 (426)
                      |.|+|+.     |+|+||||++.||+||+||++||+          .+||+|+.||||+++||||+|++....+.++   
T Consensus         2 V~l~T~~-----G~i~ieL~~~~aP~t~~nF~~l~~----------~g~Y~g~~fhrv~~~~~iq~G~~~~~~~~~~---   63 (164)
T d1lopa_           2 VTFHTNH-----GDIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGMKQKA---   63 (164)
T ss_dssp             EEEEETT-----EEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEECCEEETTTEEEESSEETTTEECC---
T ss_pred             EEEEeCC-----eEEEEEEcCCCCHHHHHHHHHHHH----------ccCcCCceeeEEcCCceeeeeccccCCcCCc---
Confidence            6677765     999999999999999999999995          5789999999999999999999875444333   


Q ss_pred             cCCCcCCccccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeeccccccCchh
Q psy6102          93 YGPCFEDENFKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFLNTFTNNCE  172 (426)
Q Consensus        93 ~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~~~~~~~~~  172 (426)
                      ++++|++|.....++.     +|.              |+|++.   +.      |+  +++|||||++.       +.+
T Consensus        64 ~~~~~~~e~~~~~~h~-----~g~--------------l~~~~~---~~------~~--~~~sqFfi~~~-------~~~  106 (164)
T d1lopa_          64 TKEPIKNEANNGLKNT-----RGT--------------LAMART---QA------PH--SATAQFFINVV-------DND  106 (164)
T ss_dssp             CCCCBCCCCCSSCCCC-----TTE--------------EEECCC---SS------TT--CBCSCEEEESS-------CCG
T ss_pred             cCCCccccccccccce-----eeE--------------EEEecc---CC------CC--Cccceeeeecc-------ccc
Confidence            3777999865444444     688              999987   54      88  99999999998       443


Q ss_pred             hhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceechhhccccH
Q psy6102         173 IHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFGCVRQGFGV  252 (426)
Q Consensus       173 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG~VieGldv  252 (426)
                       +++.                                          .|.+.++.           .|++||+|++|+++
T Consensus       107 -~~~~------------------------------------------~~~~~~~~-----------~ytvFG~Vv~G~dv  132 (164)
T d1lopa_         107 -FLNF------------------------------------------SGESLQGW-----------GYCVFAEVVDGMDE  132 (164)
T ss_dssp             -GGSC------------------------------------------CSSSTTTS-----------CCCEEEEEEECHHH
T ss_pred             -cccc------------------------------------------cCCCcCCC-----------ceeecCEEeccHHH
Confidence             3222                                          11222222           99999999999999


Q ss_pred             HHHHhhchhh-C----Ccccccchhh
Q psy6102         253 AREVSYVEAE-N----DKPLVLNQME  273 (426)
Q Consensus       253 l~~I~~l~~~-~----~~P~~~i~il  273 (426)
                      +++|+.+++. .    ++|.+++.|.
T Consensus       133 l~~I~~~~t~~~~~~~~~P~~~v~I~  158 (164)
T d1lopa_         133 VDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_dssp             HHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred             HHHHHhCCcCCCCCcCCCcCCCeEEE
Confidence            9999998873 2    3676665543

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=230.17  Aligned_cols=152  Identities=37%  Similarity=0.486  Sum_probs=126.8

Q ss_pred             ccCCCceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCCCccccccCCcccccccccEEeeCccccCC
Q psy6102           6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~~k~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ++....+|.|+|++     |+|+||||.+.||+||+||++||+          .+||+|+.||||+++||+|+|++... 
T Consensus         5 ~~~~~~~a~~~T~~-----G~i~ieL~~~~aP~tv~nF~~l~~----------~g~Y~g~~f~rv~~~~~iq~G~~~~~-   68 (164)
T d2a2na1           5 PKRVSDSAIIHTSM-----GDIHTKLFPVECPKTVENFCVHSR----------NGYYNGHTFHRIIKGFMIQTGDPTGT-   68 (164)
T ss_dssp             CCCCCSEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTTSS-
T ss_pred             CccccCEEEEEece-----eEEEEEEcCCCChHHHHHHHHHHh----------CCCcccceeeEEeeeeeEeecccccc-
Confidence            34455677887765     999999999999999999999995          57899999999999999999999743 


Q ss_pred             CCCCccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102          86 GTGGESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~  164 (426)
                      +.++....+..|.+|. ..+.|++     +|+              ++|++.   +       |+  +++|||||+++  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------------l~~~~~---~-------~~--s~~sqFfI~~~--  115 (164)
T d2a2na1          69 GMGGESIWGGEFEDEFHSTLRHDR-----PYT--------------LSMANA---G-------SN--TNGSQFFITVV--  115 (164)
T ss_dssp             SSCCCCTTSSCBCCCCCTTCCSCS-----SSE--------------EEECCS---S-------TT--CBCSCEEEESS--
T ss_pred             cCCCceeeecccccccccccccCc-----cce--------------eehhhc---C-------CC--CCcccceeccc--
Confidence            3333333345566654 5677777     888              999999   8       88  99999999999  


Q ss_pred             ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102         165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG  244 (426)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG  244 (426)
                           +.+ +||+                                                             .|++||
T Consensus       116 -----~~~-~ld~-------------------------------------------------------------~~tVFG  128 (164)
T d2a2na1         116 -----PTP-WLDN-------------------------------------------------------------KHTVFG  128 (164)
T ss_dssp             -----CCG-GGTT-------------------------------------------------------------TSCEEE
T ss_pred             -----Ccc-cccc-------------------------------------------------------------ceeEEE
Confidence                 999 9999                                                             999999


Q ss_pred             hhhccccHHHHHhhchh--hCCcccccchhh
Q psy6102         245 CVRQGFGVAREVSYVEA--ENDKPLVLNQME  273 (426)
Q Consensus       245 ~VieGldvl~~I~~l~~--~~~~P~~~i~il  273 (426)
                      +|++|++++++|+.+++  ..++|..++.|.
T Consensus       129 ~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~  159 (164)
T d2a2na1         129 RVTKGMEVVQRISNVKVNPKTDKPYEDVSII  159 (164)
T ss_dssp             EEEECHHHHHHHHTSCBCTTTCCBSSCCBEE
T ss_pred             EecChHHHHHHHHcCCcCCCCCCcCCCcEEE
Confidence            99999999999999888  347888877664

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=3.5e-30  Score=229.03  Aligned_cols=154  Identities=34%  Similarity=0.459  Sum_probs=128.5

Q ss_pred             ceEEEEEEECCeeeeeEEEEecCCCChHHHHHHHHhhhCCCCCCCC-----CccccccCCcccccccccEEeeCccccCC
Q psy6102          11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-----GKALHFTGSHFHRIIPQFMIQGGDITNFN   85 (426)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~~~l~~~~~P~~~~nf~~l~~~~~~~~~~-----~k~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (426)
                      ..|.|+|+     .|+|+||||++.||+||+||++||+++.+.+..     .+..||+++.|||+++++++|||++. .+
T Consensus         4 ~~~ti~T~-----~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~-~~   77 (171)
T d1w74a_           4 ATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GT   77 (171)
T ss_dssp             EEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT-SS
T ss_pred             EEEEEEEC-----CEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEccccc-CC
Confidence            45666665     599999999999999999999999987655422     34568999999999999999999996 34


Q ss_pred             CCCCccccCCCcCCcc-ccccCCCCCCCCCCcchhhhhhhhhhcceeeeeeccccCCCCCCCCCCCccccceEEEEeecc
Q psy6102          86 GTGGESIYGPCFEDEN-FKLKGIYPKNKYPGIYPSLVKAMFRMLTFTSMVCLFSLGSGLGLGLASTLVGSYQFSCTVSFL  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sqF~i~~~~~  164 (426)
                      +.++.   +..+.+|. ...+|++     +|+              |+|++.   +       |+  +++|||||+++  
T Consensus        78 ~~~~~---~~~~~~e~~~~~~~~~-----~g~--------------v~~~~~---~-------~~--s~~sqFfIt~~--  121 (171)
T d1w74a_          78 GRGGP---GYKFADEFHPELQFDK-----PYL--------------LAMANA---G-------PG--TNGSQFFITVG--  121 (171)
T ss_dssp             SSCCS---SCCBCCCCCTTCCSCS-----SSE--------------EEECCS---S-------TT--CBSSCEEEESS--
T ss_pred             CCCCc---ccccccccCCCcCCCC-----CEE--------------EEEEec---C-------CC--CCCcceEeecc--
Confidence            44443   34466664 4677888     899              999999   8       89  99999999999  


Q ss_pred             ccccCchhhhhhhhHHHHHHHHhhhhhhhhhhhchhhhhHhhhcchHHHhhhccCCCCccchhHHHHHhhhcccccceec
Q psy6102         165 NTFTNNCEIHLQRLNVKLRKIEADLSILEAKHYYNQGALEKKRGITEHKKKLETGRGKEISRKQYRDLVKKKKKKNGIFG  244 (426)
Q Consensus       165 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~vFG  244 (426)
                           +.| +||+                                                             +|++||
T Consensus       122 -----~~p-~ld~-------------------------------------------------------------~~tVFG  134 (171)
T d1w74a_         122 -----KTP-HLNR-------------------------------------------------------------RHTIFG  134 (171)
T ss_dssp             -----CCG-GGTT-------------------------------------------------------------TSCEEE
T ss_pred             -----CCC-cccc-------------------------------------------------------------ccEEEE
Confidence                 999 9999                                                             999999


Q ss_pred             hhhc--cccHHHHHhhchh-hCCcccccchhh
Q psy6102         245 CVRQ--GFGVAREVSYVEA-ENDKPLVLNQME  273 (426)
Q Consensus       245 ~Vie--Gldvl~~I~~l~~-~~~~P~~~i~il  273 (426)
                      +|++  ||+++++|+.+++ .+++|..++.|.
T Consensus       135 ~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I~  166 (171)
T d1w74a_         135 EVIDAESQRVVEAISKTATDGNDRPTDPVVIE  166 (171)
T ss_dssp             EECSHHHHHHHHHHHTSCBCTTSCBSSCCEEE
T ss_pred             EEeccccHHHHHHHHcCCcCCCCccCCCcEEE
Confidence            9994  9999999999988 568888776654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.87  E-value=1.8e-21  Score=171.21  Aligned_cols=154  Identities=31%  Similarity=0.518  Sum_probs=137.2

Q ss_pred             chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      .+.+..+..+++.|+.+|+.|+|.+|+..|++||.+++...... ........+....+|.|+|.||+++++|.+|+.+|
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~   87 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS-EKESKASESFLLAAFLNLAMCYLKLREYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc-hhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhh
Confidence            44556789999999999999999999999999999875433221 22233345667789999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      +++|.++|++.++|+++|.++..+|++++|+.+|++++.++|+|+.+...+..+...+.++.+.+++.|++||..
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999963

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-21  Score=170.06  Aligned_cols=155  Identities=30%  Similarity=0.525  Sum_probs=137.3

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      ..+.++.+..+++.|+.+|+.|+|++|+..|++||++++....... .......+....+|.++|.||+++|+|++|+.+
T Consensus         6 ~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~   84 (170)
T d1p5qa1           6 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-EEAQKAQALRLASHLNLAMCHLKLQAFSAAIES   84 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch-HHHhhhchhHHHHHHHHHHHHHhhhhcccccch
Confidence            3445567889999999999999999999999999998765433222 222233455678999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q psy6102         349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  424 (426)
Q Consensus       349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~f~~  424 (426)
                      ++++|+++|+++.+|+++|.||..+|++++|+.+|++|++++|+|+.+...+..+...+.+..+.++..|++||+.
T Consensus        85 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          85 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999974

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=8e-21  Score=166.77  Aligned_cols=148  Identities=26%  Similarity=0.495  Sum_probs=135.0

Q ss_pred             chhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHH
Q psy6102         270 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  349 (426)
Q Consensus       270 i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~  349 (426)
                      ......+..++..|+.++..|+|.+|+..|++||++.+.............++|....++.++|.|++++|+|++|+.+|
T Consensus        21 ~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  100 (169)
T d1ihga1          21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  100 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhh
Confidence            34455677889999999999999999999999999877665555556666778999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT  417 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~  417 (426)
                      ++||+++|+++++|+++|.+|..+|++++|+.+|++|++++|+|..+...+..+...+.+..+++|++
T Consensus       101 ~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~~  168 (169)
T d1ihga1         101 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA  168 (169)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999998888754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.83  E-value=2e-20  Score=161.94  Aligned_cols=143  Identities=25%  Similarity=0.361  Sum_probs=124.0

Q ss_pred             cchhhhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHH
Q psy6102         269 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  348 (426)
Q Consensus       269 ~i~ilk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~  348 (426)
                      ..+.+..+..++..|+.+|+.|+|.+|+..|++||.+++...............+....++.|+|.||++++++++|+++
T Consensus        10 ~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~   89 (153)
T d2fbna1          10 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH   89 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhh
Confidence            34556678899999999999999999999999999987654443333333333455677999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         349 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       349 ~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      |++||+++|+++++|+++|.+|..+|++++|+.+|+++++++|+|..+...+..+...+++.+
T Consensus        90 ~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          90 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999999988776543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-19  Score=149.59  Aligned_cols=115  Identities=21%  Similarity=0.289  Sum_probs=110.8

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+++.|+.+++.|+|++|+..|++||++                +|.++.+|.++|.|+.++|++++|+.+|.++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   65 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL----------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD   65 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCcchhhhhcccccccccccccccchhhhhHHH
Confidence            3567889999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      ++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..++.+..
T Consensus        66 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-18  Score=151.49  Aligned_cols=121  Identities=19%  Similarity=0.352  Sum_probs=115.7

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ++.+..++..|+.+|+.|+|++|+.+|++|+++                +|.+..+|.++|.|++.+|++++|+.+|+++
T Consensus         7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ka   70 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------NPSNAIYYGNRSLAYLRTECYGYALGDATRA   70 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc----------------chhhhhhhhhhHHHHHhccccchHHHHHHHH
Confidence            467889999999999999999999999999999                9999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         353 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      |+++|++..+|+++|.++..+|++++|+.+|++++.++|++..++..+..+...+++
T Consensus        71 l~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          71 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888766544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.1e-18  Score=155.14  Aligned_cols=104  Identities=22%  Similarity=0.369  Sum_probs=100.3

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+++.|+.+|+.|+|++|+..|++||++                +|.++.+|+++|.||+++|+|++|+.+|++||+
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----------------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~   66 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALE   66 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence            3677999999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      ++|+++.+|+++|.+|..+|++++|+.+|++|++++|++.
T Consensus        67 l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999999999999999999998654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.4e-16  Score=131.72  Aligned_cols=118  Identities=21%  Similarity=0.315  Sum_probs=105.8

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      +.+..++++|+.+|..|+|++|+.+|++||++                +|.+..++.++|.||.++|+|++|+.+|++||
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL----------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            35788999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         354 LMEPNNV-------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       354 ~ldp~~~-------kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +++|.+.       .+|+++|.++..++++++|+.+|++++.++|. +.+...+..+.+.++
T Consensus        66 ~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            9998774       57888999999999999999999999999875 566666666655443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.2e-15  Score=140.12  Aligned_cols=122  Identities=15%  Similarity=0.111  Sum_probs=114.3

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..++.+|..|++.|+|++|+..|++||++                +|.++.+|+++|.++.++|++++|+.+|++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   98 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL   98 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----------------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH
Confidence            46889999999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      +++|+++.+++++|.++..+|++++|+..|+++++++|.+......+..+....+...
T Consensus        99 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~  156 (259)
T d1xnfa_          99 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ  156 (259)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHH
Confidence            9999999999999999999999999999999999999999988877777666655443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.8e-16  Score=127.83  Aligned_cols=113  Identities=14%  Similarity=0.209  Sum_probs=103.5

Q ss_pred             hccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCC
Q psy6102         281 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---KAYKRAINLCDDILLMEP  357 (426)
Q Consensus       281 ~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l---g~~~~Ai~~~~~AL~ldp  357 (426)
                      .+.+.+...+++++|.+.|.+||.+                +|.++.+++|+|.|+++.   +++.+|+..++++|..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~----------------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA----------------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----------------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            5677889999999999999999999                999999999999999874   556679999999999998


Q ss_pred             CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         358 NN--VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       358 ~~--~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      .+  ..+|+++|.+|..+|++++|+++|+++++++|+|..++..+..+...+++
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            66  56999999999999999999999999999999999999999988887654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=4.3e-15  Score=126.87  Aligned_cols=118  Identities=20%  Similarity=0.318  Sum_probs=107.9

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHc----------cCHHHHHHHHHH
Q psy6102         282 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF----------KAYKRAINLCDD  351 (426)
Q Consensus       282 ~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~l----------g~~~~Ai~~~~~  351 (426)
                      .+..+-+.+.|++|+..|++|+++                +|.++.+++++|.++..+          +.+++|+..|++
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~----------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~k   66 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKS----------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE   66 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhh----------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            466778889999999999999999                999999999999999865          556899999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~lg~-----------~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ||+++|+++.+|+++|.+|..+|+           |++|+++|++|++++|++..++..|+.+.+..+.+.+..|
T Consensus        67 Al~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          67 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988764           7999999999999999999999999999998888877654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-14  Score=129.49  Aligned_cols=123  Identities=15%  Similarity=0.171  Sum_probs=110.1

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++..|..++..|+|++|+..|.++                   .+.++.+|+|+|.||+.+|++++|+++|++||+
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i-------------------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV-------------------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS-------------------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc-------------------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            3456678899999999999999999752                   455678999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----------------QQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n----------------~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                      ++|+++.+|+++|.++..+|++++|+++|++|+...|.+                .+++.+++.++..+++..++...
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~  142 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ  142 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999999999999999987654                36778899999999999988764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.2e-14  Score=136.57  Aligned_cols=116  Identities=12%  Similarity=0.076  Sum_probs=67.8

Q ss_pred             HHHhccchhhhhh-hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy6102         278 TIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  356 (426)
Q Consensus       278 ~~~~~G~~~f~~g-~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ld  356 (426)
                      +|..+|..+...+ ++++|+..|.++++.                +|.+..+|.++|.++.++|++++|+++++++++++
T Consensus        79 a~~~r~~~l~~l~~~~~eal~~~~~al~~----------------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d  142 (315)
T d2h6fa1          79 VWHFRRVLLKSLQKDLHEEMNYITAIIEE----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD  142 (315)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHH----------------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh
Confidence            3444444444433 344555555555444                66666666666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Q psy6102         357 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  409 (426)
Q Consensus       357 p~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~  409 (426)
                      |++..+|+++|.++..++++++|+++|+++++++|.|..++..++.+...++.
T Consensus       143 p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         143 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            66666666666666666666666666666666666666666666655554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=1.8e-14  Score=117.20  Aligned_cols=94  Identities=13%  Similarity=0.133  Sum_probs=86.7

Q ss_pred             HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy6102         278 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  357 (426)
Q Consensus       278 ~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp  357 (426)
                      ..+.+|..+++.|++.+|+..|++++..                +|.++.+|.++|.++.+++++++|+.+++++++++|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   81 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK----------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP   81 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc----------------ccccchhhhhhhhhhhhhhhHHHhhccccccccccc
Confidence            3567899999999999999999999998                899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6102         358 NNVKALFRRGRAQVSMNNFEQGLQDYEQAL  387 (426)
Q Consensus       358 ~~~kal~~lg~a~~~lg~~~~Al~~l~kAl  387 (426)
                      ++..+|+.+|.+|..+|++++|+++|+++|
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999876

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.8e-14  Score=133.59  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=66.6

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  401 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~  401 (426)
                      .|....++..+|.++.++|++++|+..++++++++|+++.+++++|.+|..+|++++|+++|++|++++|+++.++..++
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg  380 (388)
T d1w3ba_         301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG  380 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            67777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHh
Q psy6102         402 FVRKQMR  408 (426)
Q Consensus       402 ~i~~~l~  408 (426)
                      .++..++
T Consensus       381 ~~~~~~~  387 (388)
T d1w3ba_         381 NTLKEMQ  387 (388)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHcC
Confidence            7776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.6e-14  Score=133.16  Aligned_cols=124  Identities=10%  Similarity=0.037  Sum_probs=68.7

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHcc-CHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDIL  353 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg-~~~~Ai~~~~~AL  353 (426)
                      .++++..+|..+.+.+.+++|+.+|++||++                +|.+..+|.+||.++..++ ++++|+.+++++|
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----------------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al  105 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL----------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAII  105 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH----------------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            4444445555555555555555555555555                5555555555555555554 2555555555555


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  414 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~  414 (426)
                      +++|++..+|+++|.++..+|++++|+++|++|++++|++..++..++.++..+++++++.
T Consensus       106 ~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al  166 (315)
T d2h6fa1         106 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL  166 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHH
Confidence            5555555555555555555555555555555555555555555555555555555554443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=131.00  Aligned_cols=120  Identities=9%  Similarity=0.112  Sum_probs=107.1

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+..+|..+...|++++|+..|++++..                .|.+..+|.++|.++.++|++++|+++|++++++
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  235 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV----------------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL  235 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhccccccccc----------------ccccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence            466888999999999999999999999999                8999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH-----------HHHHHHHHHHHhhHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI-----------LKEIAFVRKQMRHHL  411 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a-----------~~~l~~i~~~l~~~~  411 (426)
                      +|+++.+|+.+|.+|..+|++++|+..|++|++++|++..+           +..++.+...+++.+
T Consensus       236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999988754           345666666665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.47  E-value=2e-14  Score=123.68  Aligned_cols=116  Identities=8%  Similarity=0.149  Sum_probs=94.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..++..|+.++..|+|++|+..|++||++.+.....    ......+....+|.++|.||.++|+|++|+.+++++|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~----~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhh----hhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            45556677999999999999999999999986543311    01111233567999999999999999999999999998


Q ss_pred             hCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q psy6102         355 MEPN-----------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  394 (426)
Q Consensus       355 ldp~-----------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~  394 (426)
                      +.|.           ...+|+++|.+|..+|++++|+++|++|+++.|+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            7542           356899999999999999999999999999977553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.8e-13  Score=123.02  Aligned_cols=121  Identities=9%  Similarity=-0.009  Sum_probs=107.9

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102         283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  362 (426)
Q Consensus       283 G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka  362 (426)
                      +..+....+++.|+..+++++....            ..++..+.+++++|.+|.++|++++|+.+|++||.++|+++.+
T Consensus         6 ~~~~~~~~~~e~al~~~~e~l~~~~------------~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a   73 (259)
T d1xnfa_           6 AVPLQPTLQQEVILARMEQILASRA------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV   73 (259)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSC------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHHhhh------------cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH
Confidence            4455566788899999988876411            1145678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         363 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       363 l~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      |+++|.++..+|++++|+.+|++|++++|++..++..++.++..+++.+++..
T Consensus        74 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  126 (259)
T d1xnfa_          74 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD  126 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999988764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.9e-13  Score=118.54  Aligned_cols=102  Identities=15%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..++++|..++..|+|++|+..|++||++                +|.++.+|+++|.|+.++|+|++|+.+|++|+..
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l----------------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~   99 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINR----------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ   99 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHH----------------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            356899999999999999999999999999                9999999999999999999999999999999987


Q ss_pred             CCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Q psy6102         356 EPNN----------------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  393 (426)
Q Consensus       356 dp~~----------------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n  393 (426)
                      .+.+                .++++++|.++..+|++++|++.|++|+.+.|+.
T Consensus       100 ~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         100 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            6643                5889999999999999999999999999999875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.8e-13  Score=125.61  Aligned_cols=130  Identities=17%  Similarity=0.203  Sum_probs=120.9

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+..+|..++..|++++|+..|++|+++                +|.++.++.++|.++..+|++.+|++.++.++.
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  299 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL----------------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR  299 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc
Confidence            4556778899999999999999999999998                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      ..|.+..+++.+|.++..+|++++|++.|+++++++|++..++..++.++..+++.++|.. .|++.
T Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  365 (388)
T d1w3ba_         300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM-HYKEA  365 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH-HHHHH
T ss_pred             cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998865 34443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.3e-12  Score=119.05  Aligned_cols=123  Identities=15%  Similarity=0.148  Sum_probs=110.2

Q ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy6102         279 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  358 (426)
Q Consensus       279 ~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~  358 (426)
                      .......+...+.+.+|+..|.+++++.+              +...+.++.++|.++..+|++++|+..+++++.++|+
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~al~~~p--------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  204 (323)
T d1fcha_         139 SKRILGSLLSDSLFLEVKELFLAAVRLDP--------------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN  204 (323)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHST--------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             chhhHHHHHHhhHHHHHHHHHHHHHHHhh--------------cccccccchhhHHHHHHHHHHhhhhcccccccccccc
Confidence            34445566778899999999999999821              2235788999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         359 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       359 ~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      ++.+|+.+|.++..+|++++|+++|+++++++|++..++..++.++..++++++|..
T Consensus       205 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         205 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=2.5e-12  Score=104.18  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      ..++++|.++++.|++.+|+..++++++++|+++.+|+.+|.++..++++++|+.+|++|++++|++..++..++.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHhh
Q psy6102         407 MRHHLNLEKMTYARM  421 (426)
Q Consensus       407 l~~~~~a~k~~~~k~  421 (426)
                      +++.++|.+ .++++
T Consensus        97 ~g~~~~A~~-~l~~~  110 (112)
T d1hxia_          97 EHNANAALA-SLRAW  110 (112)
T ss_dssp             HHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHH-HHHHH
Confidence            999999965 55544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-11  Score=101.26  Aligned_cols=91  Identities=13%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      .-+...|..+++.|+|++|+..|+++|+++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHH
Q psy6102         407 MRHHLNLEKMT  417 (426)
Q Consensus       407 l~~~~~a~k~~  417 (426)
                      +++++++.+..
T Consensus        84 ~~~~~~A~~~~   94 (117)
T d1elwa_          84 LNRFEEAKRTY   94 (117)
T ss_dssp             TTCHHHHHHHH
T ss_pred             ccCHHHHHHHH
Confidence            99999998643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=4.9e-12  Score=111.17  Aligned_cols=90  Identities=16%  Similarity=0.066  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      +..+...|.++++.|+|++|+..|++||.++|+++.+|+++|.||..+|++++|+.+|++|++++|++..++..++.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHH
Q psy6102         406 QMRHHLNLEK  415 (426)
Q Consensus       406 ~l~~~~~a~k  415 (426)
                      .+++++++..
T Consensus        84 ~l~~~~~A~~   93 (201)
T d2c2la1          84 EMESYDEAIA   93 (201)
T ss_dssp             HTTCHHHHHH
T ss_pred             HCCCHHHHHH
Confidence            9999999874

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4e-12  Score=99.99  Aligned_cols=90  Identities=11%  Similarity=0.020  Sum_probs=77.2

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .++.++++|..+++.|+|.+|+..|++|+++.+...         ...+....++.++|.|+.++|++++|+..|+++|+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~---------~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE---------ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---------CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh---------ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            467789999999999999999999999999865432         12456688999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHc
Q psy6102         355 MEPNNVKALFRRGRAQVSM  373 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~l  373 (426)
                      ++|+++.++.+++.+...+
T Consensus        75 l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          75 LDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HCTTCHHHHHHHHHHHHHH
T ss_pred             hCcCCHHHHHHHHHHHHHh
Confidence            9999999999988765543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-11  Score=105.72  Aligned_cols=91  Identities=18%  Similarity=0.127  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  405 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~  405 (426)
                      +..+..+|..+++.|+|++|+.+|+++|+++|+++.+|+++|.++..+|++++|+.+|++|++++|++..++..++.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHH
Q psy6102         406 QMRHHLNLEKM  416 (426)
Q Consensus       406 ~l~~~~~a~k~  416 (426)
                      .+++++++...
T Consensus        90 ~~g~~~eA~~~  100 (159)
T d1a17a_          90 ALGKFRAALRD  100 (159)
T ss_dssp             HTTCHHHHHHH
T ss_pred             HcCCHHHHHHH
Confidence            99999998763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.8e-12  Score=98.29  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH
Q psy6102         325 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  397 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~-------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~  397 (426)
                      .++-++++|.++++.|+|.+|+.++++|+++.|.+       ..+|.++|.++..+|++++|+..|++||+++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35668899999999999999999999999986543       78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy6102         398 KEIAFVRKQMRH  409 (426)
Q Consensus       398 ~~l~~i~~~l~~  409 (426)
                      .+++.+.+.+.+
T Consensus        84 ~Nl~~~~~~l~k   95 (95)
T d1tjca_          84 GNLKYFEYIMAK   95 (95)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCc
Confidence            999988887653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.2e-11  Score=99.08  Aligned_cols=90  Identities=10%  Similarity=0.107  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH-------HH
Q psy6102         326 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI-------LK  398 (426)
Q Consensus       326 ~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a-------~~  398 (426)
                      +..+.++|.++++.|+|++|+.+|+++|+++|+++.+++++|.||..+|+|++|+.+|++|++++|.+..+       +.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44667999999999999999999999999999999999999999999999999999999999999988654       44


Q ss_pred             HHHHHHHHHhhHHHHHH
Q psy6102         399 EIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       399 ~l~~i~~~l~~~~~a~k  415 (426)
                      .++.++..++.++++..
T Consensus        84 ~lg~~~~~~~~~~~A~~  100 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIH  100 (128)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHH
Confidence            55556666666666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=3e-10  Score=99.71  Aligned_cols=129  Identities=12%  Similarity=0.015  Sum_probs=106.4

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcc------cchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ------SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI  346 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~------~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai  346 (426)
                      ....+.+...|..+...|++++|+..|.+|+.+.+....      .+.......+.+....++.+++.+++++|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            446778899999999999999999999999997432211      12234445566788899999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCcHHHHHHHHH
Q psy6102         347 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA-------LDLLPNDQQILKEIAF  402 (426)
Q Consensus       347 ~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kA-------l~l~P~n~~a~~~l~~  402 (426)
                      .+++++|.++|.+..+|..++.+|..+|++.+|++.|+++       +-++|.. +.......
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~-~l~~l~~~  149 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP-TLRALNER  149 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH-HHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH-HHHHHHHH
Confidence            9999999999999999999999999999999999999998       4467763 33333333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=3.7e-10  Score=105.93  Aligned_cols=137  Identities=12%  Similarity=0.128  Sum_probs=113.7

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      ...+..|...|+.|...++|++|+.+|.+|+++......          .+....+|.++|.||.++|++++|+++++++
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~----------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN----------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            346778999999999999999999999999998544331          3445789999999999999999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         353 LLMEPNN------VKALFRRGRAQVS-MNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       353 L~ldp~~------~kal~~lg~a~~~-lg~~~~Al~~l~kAl~l~P~n------~~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      +.+.+..      ..++.++|.++.. ++++++|++.|++|+++.+.+      ..++..++.++..++++.++.. .|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~-~~~  182 (290)
T d1qqea_         104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYS  182 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred             hHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH-HHH
Confidence            9987655      7789999998865 699999999999999885432      4567888999999999988876 344


Q ss_pred             h
Q psy6102         420 R  420 (426)
Q Consensus       420 k  420 (426)
                      +
T Consensus       183 ~  183 (290)
T d1qqea_         183 K  183 (290)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=2.1e-10  Score=99.04  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=84.0

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+.++|..+++.|+|++|+..|++||++                +|.++.+|+++|.++.++|++++|+.+|++++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~----------------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEI----------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhh----------------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            36678889999999999999999999999999                99999999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHH
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGL  380 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al  380 (426)
                      +++|++..++..++.+...+..+.++.
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987776665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.02  E-value=8.2e-10  Score=95.34  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=81.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+.++|.+|++.++|.+|+..|++||.+                +|.+..+|+++|.|+..+|+|++|+.+|.+++.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l----------------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGL----------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhc----------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556788999999999999999999999999                999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHH
Q psy6102         355 MEPNNVKALFRRGRAQVSMNNFEQ  378 (426)
Q Consensus       355 ldp~~~kal~~lg~a~~~lg~~~~  378 (426)
                      ++|++..++..++.+...++.+.+
T Consensus       127 l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         127 VNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999988776665543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.8e-10  Score=95.47  Aligned_cols=89  Identities=18%  Similarity=0.113  Sum_probs=82.2

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+.++|.+|++.|+|++|+..+++||++                +|.++.+|+++|.|+..+|+|++|+.+|++++++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~----------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALEL----------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhc----------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            445778999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHH
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGL  380 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al  380 (426)
                      +|++..+...++.+...+....+..
T Consensus       126 ~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         126 YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988776666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.1e-09  Score=104.24  Aligned_cols=122  Identities=10%  Similarity=0.077  Sum_probs=111.5

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC--HHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YKRAINLCDDI  352 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~--~~~Ai~~~~~A  352 (426)
                      ....+...+..+...+++.+|+..|+++++.                +|.+..+|.++|.++..+++  +++|+..++++
T Consensus        72 ~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~----------------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  135 (334)
T d1dcea1          72 VLQHLETEKSPEESAALVKAELGFLESCLRV----------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARF  135 (334)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHh----------------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHH
Confidence            3455677888899999999999999999999                99999999999999998875  89999999999


Q ss_pred             HHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHH
Q psy6102         353 LLMEPNNVKAL-FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  412 (426)
Q Consensus       353 L~ldp~~~kal-~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~  412 (426)
                      +.++|.+..++ +.+|.++...+.+++|+.+++++++++|++..++..++.++..++++++
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~  196 (334)
T d1dcea1         136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  196 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHH
Confidence            99999999986 5678899999999999999999999999999999999999999887653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.98  E-value=6.1e-10  Score=94.77  Aligned_cols=83  Identities=16%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      +..+.++|..|++.++|++|+..|++||++                +|.++.+|+++|.++..+|++++|+.+|++++++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~----------------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKI----------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccc----------------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456788999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q psy6102         356 EPNNVKALFRRGRAQVSMN  374 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg  374 (426)
                      +|++..+...++.+...+.
T Consensus       131 ~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999988876553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5.7e-10  Score=113.05  Aligned_cols=117  Identities=8%  Similarity=-0.024  Sum_probs=85.6

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  353 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL  353 (426)
                      ..+..+..+|..+.+.+++.+|+..|.+++..                ++  ..++.++|.++..+++|++|+.+|++|+
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----------------IC--QHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             -------------------------CCHHHHH----------------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC----------------CH--HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            35567888999999999999999999999877                33  3588899999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q psy6102         354 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  408 (426)
Q Consensus       354 ~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~  408 (426)
                      +++|++..+|+++|.++...|++.+|+.+|.+|+.++|..+.++.+|..+.....
T Consensus       180 ~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999998877654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=9.5e-09  Score=95.98  Aligned_cols=137  Identities=7%  Similarity=0.038  Sum_probs=109.2

Q ss_pred             hHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH-ccCHHHHHHHHHHH
Q psy6102         274 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDI  352 (426)
Q Consensus       274 k~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~-lg~~~~Ai~~~~~A  352 (426)
                      ..+..+.+.|++|.+.+++++|+.+|.+|+++.+....          ......++.++|.++.. ++++++|++.|++|
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ----------FRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc----------chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999998654332          23446788999998865 79999999999999


Q ss_pred             HHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         353 LLMEPN------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-------QILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       353 L~ldp~------~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~-------~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      +++.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+.       ........++...++...+.+ .+.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~-~~~  223 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR-TLQ  223 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHH-HHH
Confidence            988532      366799999999999999999999999999988774       334555666666777766654 444


Q ss_pred             hh
Q psy6102         420 RM  421 (426)
Q Consensus       420 k~  421 (426)
                      ++
T Consensus       224 ~~  225 (290)
T d1qqea_         224 EG  225 (290)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=5.5e-09  Score=88.06  Aligned_cols=75  Identities=12%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         335 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM----------NNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       335 ~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l----------g~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      .+.+++.|++|+..|++|++++|+++.+++++|.++..+          +.+++|+..|++|++++|++..++.+++.++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            456788899999999999999999999999999999854          5568999999999999999999999999999


Q ss_pred             HHHhh
Q psy6102         405 KQMRH  409 (426)
Q Consensus       405 ~~l~~  409 (426)
                      ..+++
T Consensus        86 ~~~g~   90 (145)
T d1zu2a1          86 TSFAF   90 (145)
T ss_dssp             HHHHH
T ss_pred             HHccc
Confidence            88765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.2e-09  Score=84.51  Aligned_cols=91  Identities=8%  Similarity=0.005  Sum_probs=79.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPNDQ--QILKEIAFVR  404 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~l---g~~~~Al~~l~kAl~l~P~n~--~a~~~l~~i~  404 (426)
                      .+++..+..++++++|.+.|+++|.++|+++.+++++|.++...   +++++|+..|++++..+|.+.  .++..++.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            36778889999999999999999999999999999999999874   455679999999999998764  5899999999


Q ss_pred             HHHhhHHHHHHHHHHhh
Q psy6102         405 KQMRHHLNLEKMTYARM  421 (426)
Q Consensus       405 ~~l~~~~~a~k~~~~k~  421 (426)
                      ..+|+++++.+ .|.+.
T Consensus        83 ~~~g~~~~A~~-~~~~a   98 (122)
T d1nzna_          83 YRLKEYEKALK-YVRGL   98 (122)
T ss_dssp             HHTTCHHHHHH-HHHHH
T ss_pred             HHHhhhHHHHH-HHHHH
Confidence            99999999986 34433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1e-07  Score=90.10  Aligned_cols=115  Identities=6%  Similarity=0.000  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCH
Q psy6102         291 RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILLMEPNNV  360 (426)
Q Consensus       291 ~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~----------~~~Ai~~~~~AL~ldp~~~  360 (426)
                      ..++|+..|.++|++                +|.+..+|..++.++..++.          +.+|+.+++++++.+|+++
T Consensus        44 ~~~~al~~~~~~l~~----------------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~  107 (334)
T d1dcea1          44 LDESVLELTSQILGA----------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  107 (334)
T ss_dssp             CSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             ccHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence            348999999999999                99999999999888776554          8999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHhhHHHHHHHHHHhhh
Q psy6102         361 KALFRRGRAQVSMNN--FEQGLQDYEQALDLLPNDQQILK-EIAFVRKQMRHHLNLEKMTYARMF  422 (426)
Q Consensus       361 kal~~lg~a~~~lg~--~~~Al~~l~kAl~l~P~n~~a~~-~l~~i~~~l~~~~~a~k~~~~k~f  422 (426)
                      .+|+.+|.++..+++  +++|+..++++++++|.+..++. .++.++...+..+++.. .+.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~-~~~~~i  171 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLI  171 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH-HHHTTT
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH-HHHHHH
Confidence            999999999988875  89999999999999999998865 55567666677766653 444444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=7.9e-08  Score=78.18  Aligned_cols=85  Identities=11%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q psy6102         325 YTAALLNMAAVQLKFK---AYKRAINLCDDILLMEPNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  400 (426)
Q Consensus       325 ~~~~~~nlA~~~~~lg---~~~~Ai~~~~~AL~ldp~~-~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l  400 (426)
                      .+...++.|+|+.+..   +..+|+..++.+++.+|.+ .++||.+|.+|+.+|+|++|+.+++++|+++|+|.+++...
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            3678899999999764   5579999999999999976 58999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy6102         401 AFVRKQMRH  409 (426)
Q Consensus       401 ~~i~~~l~~  409 (426)
                      ..+...+.+
T Consensus       114 ~~Ie~~~~k  122 (124)
T d2pqrb1         114 SMVEDKIQK  122 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            988877654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.62  E-value=1.5e-08  Score=94.20  Aligned_cols=117  Identities=7%  Similarity=-0.087  Sum_probs=100.2

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102         283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  362 (426)
Q Consensus       283 G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka  362 (426)
                      +..+++.|++++|+..|+++|+.                +|.+..++.+++.++...|++++|+..++++++++|++..+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~----------------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKA----------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            45678899999999999999999                99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         363 LFRRGRAQVSMNNFEQGLQDYEQALDL-LPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       363 l~~lg~a~~~lg~~~~Al~~l~kAl~l-~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +..++.++...+..+++...+.++..+ +|.+.........+....++.+++..
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~  120 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE  120 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHH
Confidence            999999998888888877765554443 45555666666777777788877765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.60  E-value=5.8e-08  Score=82.23  Aligned_cols=87  Identities=15%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc----
Q psy6102         330 LNMAAVQLKFKAYKRAINLCDDILLMEPNN------------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----  393 (426)
Q Consensus       330 ~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~------------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n----  393 (426)
                      ...|..+++.|+|++|+..|++||++.|+.            ..+|.++|.+|..+|++++|+.++++++++.|..    
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            344888899999999999999999998865            4689999999999999999999999999986532    


Q ss_pred             -------HHHHHHHHHHHHHHhhHHHHHHH
Q psy6102         394 -------QQILKEIAFVRKQMRHHLNLEKM  416 (426)
Q Consensus       394 -------~~a~~~l~~i~~~l~~~~~a~k~  416 (426)
                             ..++.+++.++..+++++++...
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~  122 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPE  122 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHH
Confidence                   34678899999999999988753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.4e-08  Score=100.83  Aligned_cols=119  Identities=11%  Similarity=-0.020  Sum_probs=74.9

Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q psy6102         283 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  362 (426)
Q Consensus       283 G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~ka  362 (426)
                      +......+.|+.|+..|.+++.+                +|.+...+.++|.++.+.+++++|+..+.+++.++|  ..+
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~  154 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNV----------------DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHC  154 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-----------------------------------------------CCHHHHHHH--HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC----------------ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHH
Confidence            33344556677777777777766                889999999999999999999999999999998887  478


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         363 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       363 l~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      ++++|.++..++++++|+.+|++|++++|++..++..++.++...++..+|...-.+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988754433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.8e-07  Score=84.90  Aligned_cols=130  Identities=12%  Similarity=-0.005  Sum_probs=104.6

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .++...-+|..++..|++++|+..|++|++..+...           .+....++..+|.++..+|++++|+..+.+++.
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~-----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC-----------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455666689999999999999999999999832211           122356899999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         355 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--------DQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       355 ldp~~------~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~--------n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.+..      ..+++.++.++...+++..|...+.+++.+.+.        ...+...++.++...++...+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~  154 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  154 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH
Confidence            76533      567899999999999999999999999986432        23466677888888888777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=3.1e-07  Score=84.66  Aligned_cols=137  Identities=10%  Similarity=0.012  Sum_probs=103.0

Q ss_pred             HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy6102         275 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  354 (426)
Q Consensus       275 ~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~  354 (426)
                      .+..+...|..+...+++++|+..+.+++...+.            ..+.....+.++|.+++.+|++++|+..+++++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  279 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc------------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566778899999999999999999998876221            1355577889999999999999999999999985


Q ss_pred             h------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6102         355 M------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---------QQILKEIAFVRKQMRHHLNLEKMTYA  419 (426)
Q Consensus       355 l------dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n---------~~a~~~l~~i~~~l~~~~~a~k~~~~  419 (426)
                      +      .|....+++.+|.+|..+|++++|++.|++|+++.+..         ......+.......++..+++++..+
T Consensus       280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~  359 (366)
T d1hz4a_         280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ  359 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            4      46678899999999999999999999999999985432         11222222222333444566666555


Q ss_pred             hhhc
Q psy6102         420 RMFQ  423 (426)
Q Consensus       420 k~f~  423 (426)
                      +++.
T Consensus       360 ~ll~  363 (366)
T d1hz4a_         360 RILR  363 (366)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=9.1e-07  Score=76.84  Aligned_cols=94  Identities=9%  Similarity=-0.063  Sum_probs=85.8

Q ss_pred             CcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHH
Q psy6102         322 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN----------------------VKALFRRGRAQVSMNNFEQG  379 (426)
Q Consensus       322 ~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~----------------------~kal~~lg~a~~~lg~~~~A  379 (426)
                      +-.....+.+.|......|++++|+..|.+||.+.+..                      ..++..++.++..+|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            34556788999999999999999999999999997643                      36899999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHH
Q psy6102         380 LQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  415 (426)
Q Consensus       380 l~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~a~k  415 (426)
                      +.+++++++++|.+..++..+..++..+|+..++.+
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999999999999999998864

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.5e-06  Score=81.19  Aligned_cols=119  Identities=4%  Similarity=-0.056  Sum_probs=62.6

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFKAYKRAINLCDDILLM  355 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~l  355 (426)
                      ..|...+......++++.|...|.++++.                .|.+ ..+|...+....+.++++.|.+.+.++++.
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~----------------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~  163 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTS----------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHH----------------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            34555556666666777777777777665                3322 234445555555555555555555555555


Q ss_pred             CCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHH
Q psy6102         356 EPNNVKALFRRGRAQV-SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  411 (426)
Q Consensus       356 dp~~~kal~~lg~a~~-~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~  411 (426)
                      .|.+...|...|.... ..++.+.|...|++++...|++..++......+...++..
T Consensus       164 ~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~  220 (308)
T d2onda1         164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH
Confidence            5555555555444432 2345555555555555555555555555555544444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.36  E-value=7.7e-07  Score=82.23  Aligned_cols=79  Identities=13%  Similarity=0.112  Sum_probs=72.4

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHH
Q psy6102         334 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  412 (426)
Q Consensus       334 ~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~l~~~~~  412 (426)
                      .-.++.|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..+...++.+....+...+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            4456789999999999999999999999999999999999999999999999999999999999999888876665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=3.4e-06  Score=78.69  Aligned_cols=128  Identities=9%  Similarity=-0.060  Sum_probs=106.9

Q ss_pred             HHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh
Q psy6102         277 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILLM  355 (426)
Q Consensus       277 ~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~-lg~~~~Ai~~~~~AL~l  355 (426)
                      ..|...++...+.++++.|+..|.+|++.                .|.....|...|..... .++.+.|...++++++.
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~----------------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~  198 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKARED----------------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTS----------------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34677778888899999999999999988                78888899998877554 68999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy6102         356 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ----QILKEIAFVRKQMRHHLNLEKMTYARM  421 (426)
Q Consensus       356 dp~~~kal~~lg~a~~~lg~~~~Al~~l~kAl~l~P~n~----~a~~~l~~i~~~l~~~~~a~k~~~~k~  421 (426)
                      .|+++..|...+..+...|+++.|...|++|+...|.++    .++..........|....+. .+++|+
T Consensus       199 ~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~-~~~~r~  267 (308)
T d2onda1         199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRR  267 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH-HHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence            999999999999999999999999999999999887553    46777777767666665543 345543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=2.3e-05  Score=63.27  Aligned_cols=78  Identities=13%  Similarity=0.052  Sum_probs=62.7

Q ss_pred             HHHHhccchhh---hhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcch-HHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6102         277 RTIKNSGNEYF---KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFKAYKRAINLCDDI  352 (426)
Q Consensus       277 ~~~~~~G~~~f---~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~-~~~~~nlA~~~~~lg~~~~Ai~~~~~A  352 (426)
                      +..++.|..+.   ...+.++||..+.++++.                +|.. -++++++|.+|+++|+|++|+.+++++
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~----------------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----------------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----------------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc----------------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33444444444   346788999999998887                6655 479999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHH
Q psy6102         353 LLMEPNNVKALFRRGRAQ  370 (426)
Q Consensus       353 L~ldp~~~kal~~lg~a~  370 (426)
                      |+++|+|..|..-+-.+-
T Consensus       100 L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         100 FEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHCTTCHHHHHHHHHHH
T ss_pred             HccCCCcHHHHHHHHHHH
Confidence            999999999876665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.90  E-value=7.8e-05  Score=66.97  Aligned_cols=107  Identities=17%  Similarity=0.179  Sum_probs=87.5

Q ss_pred             HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----ccCHHHHHHHHHH
Q psy6102         276 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDD  351 (426)
Q Consensus       276 a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----lg~~~~Ai~~~~~  351 (426)
                      +.+++.+|..+++++||.+|+.+|++|.+.                  .+..+++++|.+|..    ..++..|+.++..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~------------------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~   63 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL------------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK   63 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcc
Confidence            568899999999999999999999999764                  467899999999998    7799999999998


Q ss_pred             HHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy6102         352 ILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  404 (426)
Q Consensus       352 AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~  404 (426)
                      +....  ++.+.+.+|.++..    ..+.+.|+..++++....+  ..+...+....
T Consensus        64 a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~  116 (265)
T d1ouva_          64 ACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIY  116 (265)
T ss_dssp             HHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             ccccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccc
Confidence            77554  88889999988875    4788999999999987754  34444444333

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00026  Score=57.25  Aligned_cols=82  Identities=15%  Similarity=0.080  Sum_probs=62.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Q psy6102         289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNNVKALF  364 (426)
Q Consensus       289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----lg~~~~Ai~~~~~AL~ldp~~~kal~  364 (426)
                      ..++++|+..|++|.+.                  .++.+++++|.+|+.    ..++.+|+++++++.+.  .++.+.+
T Consensus        36 ~~~~~~a~~~~~~aa~~------------------g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~   95 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL------------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL   95 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             ccCHHHHHHHHhhhhcc------------------cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHH
Confidence            35677788888777654                  456778888888876    56788888888888765  4788888


Q ss_pred             HHHHHHHH----cCChHHHHHHHHHHHHhC
Q psy6102         365 RRGRAQVS----MNNFEQGLQDYEQALDLL  390 (426)
Q Consensus       365 ~lg~a~~~----lg~~~~Al~~l~kAl~l~  390 (426)
                      ++|.+|..    ..++.+|+..|++|.++.
T Consensus        96 ~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          96 ILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            88888776    467888888888888763

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.68  E-value=0.00011  Score=65.85  Aligned_cols=104  Identities=16%  Similarity=0.168  Sum_probs=79.2

Q ss_pred             HHHhccchhhh----hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHH----ccCHHHHHHHH
Q psy6102         278 TIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLC  349 (426)
Q Consensus       278 ~~~~~G~~~f~----~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~----lg~~~~Ai~~~  349 (426)
                      .+..+|..++.    ..+...+...++++.+                  ..++.+++++|.++..    .+++++|+.+|
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~------------------~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~  205 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACD------------------LKDSPGCFNAGNMYHHGEGATKNFKEALARY  205 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhcccc------------------ccccccccchhhhcccCcccccchhhhhhhH
Confidence            34455555553    4455666666666654                  4568899999999998    77999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy6102         350 DDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFV  403 (426)
Q Consensus       350 ~~AL~ldp~~~kal~~lg~a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i  403 (426)
                      .++.+.  .++.+++++|.+|..    ..++++|++.|++|..+.  +..+...+..+
T Consensus       206 ~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~l  259 (265)
T d1ouva_         206 SKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQL  259 (265)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTC
T ss_pred             hhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHHH
Confidence            999887  479999999999986    458999999999999885  45555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=0.00029  Score=56.93  Aligned_cols=94  Identities=15%  Similarity=0.105  Sum_probs=78.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhcccchhhhhhhcCcchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy6102         289 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  368 (426)
Q Consensus       289 ~g~y~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~p~~~~~~~nlA~~~~~lg~~~~Ai~~~~~AL~ldp~~~kal~~lg~  368 (426)
                      .+|+++|+.+|++|.+.                .  ++.++++++.  ....++++|+.+++++.+.  .++.+.+.+|.
T Consensus         6 ~kd~~~A~~~~~kaa~~----------------g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~   63 (133)
T d1klxa_           6 KKDLKKAIQYYVKACEL----------------N--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHHHT----------------T--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHC----------------C--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHH
Confidence            46899999999999876                2  3345566653  3467899999999999875  68999999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy6102         369 AQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  406 (426)
Q Consensus       369 a~~~----lg~~~~Al~~l~kAl~l~P~n~~a~~~l~~i~~~  406 (426)
                      +|..    ..++++|++.|+++.+.  .++.+...|+.++..
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            9986    57899999999999876  678899999998876

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.91  E-value=0.4  Score=35.53  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=31.6

Q ss_pred             hhHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhh
Q psy6102         273 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY  309 (426)
Q Consensus       273 lk~a~~~~~~G~~~f~~g~y~~Ai~~y~kAl~~~~~~  309 (426)
                      ...+..+...|..+-..|+|++|+.+|.+||+++-..
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~   48 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV   48 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4567778899999999999999999999999986443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.46  E-value=3.1  Score=29.56  Aligned_cols=24  Identities=21%  Similarity=0.083  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q psy6102         327 AALLNMAAVQLKFKAYKRAINLCD  350 (426)
Q Consensus       327 ~~~~nlA~~~~~lg~~~~Ai~~~~  350 (426)
                      ..+-.+|.-+++.|.|++||++..
T Consensus         9 H~~~RrAer~l~~~rydeAIech~   32 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHR   32 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344455555555555555555543