Psyllid ID: psy6105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
SSSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNGR
Secondary Structure (PSIPRED)
cccccccccEEEEccccccccccccccccEEEEEEEEEcccccEEEEEEEEEcccccccccccccccccccEEEEEEEEccEEEcEEcccccccccccEEccEEEEEEccccccccEEEEEEEEccccccccccEEEEEcccccccHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccccccccccccccccccEEEEEEEEccccccEEEEEEEEcccccccccccccccccccEEEEEEccccccccccccEEEccccccccccEEEEEccHHHHcccEEEEEEEEccccccccEEEEEEEccccccccHHHHHHHHHcccccHHHHccccccccccHHHHccccccccccccccc
Coil and Loop (DISEMBL)
ssskgsrsfradnycrptignrsipsvadpyVKVYLVCEGkrirkkrtsvkknslnpfyneallfdvpanpyvKVYLVCEGkrirkkrtsvkknslnpfyneallfdvpasnvndvsLIIKVIdydrigsdelmgctaigssfigigrdhwlemldnprqpvtqwyplmetvpgqiplshssnlpsslsclngr
Flexible Loop (DISEMBL)
ssskgsrsfradnycrptignrsipsvadpyVKVYLVCegkrirkkrtsvkknslnpfyneallfdvpanpYVKVYLVCegkrirkkrtsvkknslnpfyneallfdvpasnvnDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQiplshssnlpsslsclngr
Low Complexity Region (SEG)
SSSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIplshssnlpsslsclnGR
Disordered region (IsUnstruct)
************NYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV**********************
Disordered Region (DISOPRED)
*******************************VKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG****KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME**************PSSLSCLN**
Disordered Region (DISEMBL)
*********RADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSS************
Disordered Region (DISPRO)
*****SRSFR***YCR**********VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SSSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q86SS6	491	Synaptotagmin-9 OS=Homo s	yes	N/A	0.469	0.185	0.5	2e-29
P24507	537	Synaptotagmin-C OS=Diplob	N/A	N/A	0.427	0.154	0.519	2e-29
Q9R0N9	491	Synaptotagmin-9 OS=Mus mu	yes	N/A	0.469	0.185	0.5	3e-29
Q925C0	491	Synaptotagmin-9 OS=Rattus	yes	N/A	0.469	0.185	0.490	7e-29
Q5T7P8	510	Synaptotagmin-6 OS=Homo s	no	N/A	0.479	0.182	0.529	4e-26
Q9R0N8	511	Synaptotagmin-6 OS=Mus mu	no	N/A	0.484	0.183	0.524	5e-26
Q62746	511	Synaptotagmin-6 OS=Rattus	no	N/A	0.484	0.183	0.533	5e-26
O35681	587	Synaptotagmin-3 OS=Mus mu	no	N/A	0.525	0.173	0.514	6e-26
P40748	588	Synaptotagmin-3 OS=Rattus	no	N/A	0.525	0.173	0.514	7e-26
Q9BQG1	590	Synaptotagmin-3 OS=Homo s	no	N/A	0.525	0.172	0.514	8e-26

>sp|Q86SS6|SYT9_HUMAN Synaptotagmin-9 OS=Homo sapiens GN=SYT9 PE=2 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 79/102 (77%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+C+G+R++K++TS K+N+LNP YNEA++FDVP  N++ + L I V+DYDR+
Sbjct: 388 SDPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENIDQIHLSIAVMDYDRV 447

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G+    +GRDHW EML  PR+P+  W+ L+E
Sbjct: 448 GHNEIIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLVE 489

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.
Homo sapiens (taxid: 9606)

>sp|P24507|SY63_DIPOM Synaptotagmin-C OS=Diplobatis ommata GN=P65-C PE=2 SV=1

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 81/102 (79%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK  L+C+ +R++K++TS+KKN+LNP YNEAL+FD+P  N+  V++II V+DYD I
Sbjct: 404 SDPYVKASLICDERRLKKRKTSIKKNTLNPVYNEALVFDIPNENMEHVNVIIAVMDYDCI 463

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G++  G GR+HW EML NPR+P+ QW+ L+E
Sbjct: 464 GHNEVIGMCRVGNATDGPGREHWNEMLANPRKPIEQWHQLIE 505

May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone.

Discopyge ommata (taxid: 7785)

>sp|Q9R0N9|SYT9_MOUSE Synaptotagmin-9 OS=Mus musculus GN=Syt9 PE=1 SV=2

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 79/102 (77%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+C+G+R++K++TS K+N+LNP YNEA++FDVP  +++ + L I V+DYDR+
Sbjct: 388 SDPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPESIDQIHLSIAVMDYDRV 447

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G+    +GRDHW EML  PR+P+  W+ LME
Sbjct: 448 GHNEVIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLME 489

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Mus musculus (taxid: 10090)

>sp|Q925C0|SYT9_RAT Synaptotagmin-9 OS=Rattus norvegicus GN=Syt9 PE=2 SV=1

 Score =  126 bits (317), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 79/102 (77%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+C+G+R++K++TS K+N+LNP YNEA++FDVP  +++ + L I V+DYDR+
Sbjct: 388 SDPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPESIDQIHLSIAVMDYDRV 447

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G+    +GRDHW EML  PR+P+  W+ L+E
Sbjct: 448 GHNEVIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLLE 489

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q5T7P8|SYT6_HUMAN Synaptotagmin-6 OS=Homo sapiens GN=SYT6 PE=1 SV=3

 Score =  117 bits (294), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 83/102 (81%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+C+G+R++KK+T++KKN+LNP YNEA++FD+P  N++ VSL+I V+DYDR+
Sbjct: 397 SDPYVKVSLLCDGRRLKKKKTTIKKNTLNPVYNEAIIFDIPPENMDQVSLLISVMDYDRV 456

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G +  G+GRDHW EML  PR+P+  W+ L+E
Sbjct: 457 GHNEIIGVCRVGITAEGLGRDHWNEMLAYPRKPIAHWHSLVE 498

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. May mediate Ca(2+)-regulation of exocytosis in acrosomal reaction in sperm.

Homo sapiens (taxid: 9606)

>sp|Q9R0N8|SYT6_MOUSE Synaptotagmin-6 OS=Mus musculus GN=Syt6 PE=1 SV=2

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 83/103 (80%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+C+G+R++KK+T++KKN+LNP YNEA++FD+P  N++ VSL+I V+DYDR+
Sbjct: 398 SDPYVKVSLLCDGRRLKKKKTTIKKNTLNPIYNEAIIFDIPPENMDQVSLLISVMDYDRV 457

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMET 171
           G +E++G   +G +  G+GRDHW EML  PR+P+  W+ L+E 
Sbjct: 458 GHNEIIGVCRVGINAEGLGRDHWNEMLAYPRKPIAHWHSLVEV 500

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis (By similarity). May mediate Ca(2+)-regulation of exocytosis in acrosomal reaction in sperm.

Mus musculus (taxid: 10090)

>sp|Q62746|SYT6_RAT Synaptotagmin-6 OS=Rattus norvegicus GN=Syt6 PE=2 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 82/103 (79%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+C+G+R++KK+T++KKN+LNP YNEA++FD+P  N++ VSL+I V+DYDR+
Sbjct: 398 SDPYVKVSLLCDGRRLKKKKTTIKKNTLNPVYNEAIIFDIPPENMDQVSLLISVMDYDRV 457

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMET 171
           G +E++G   +G S  G+GRDHW EML  PR+P+  W+ L E 
Sbjct: 458 GHNEIIGVCRVGISAEGLGRDHWNEMLAYPRKPIAHWHCLAEV 500

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. May mediate Ca(2+)-regulation of exocytosis in acrosomal reaction in sperm.

Rattus norvegicus (taxid: 10116)

>sp|O35681|SYT3_MOUSE Synaptotagmin-3 OS=Mus musculus GN=Syt3 PE=1 SV=2

 Score =  117 bits (292), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK  L+ EG+R++K++TS+KKN+LNP YNEAL+FDV   +V +V L I V+DYD I
Sbjct: 464 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 523

Query: 129 GSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G       GR+HW EML NPR+PV  W+ L+E
Sbjct: 524 GHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 566

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Mus musculus (taxid: 10090)

>sp|P40748|SYT3_RAT Synaptotagmin-3 OS=Rattus norvegicus GN=Syt3 PE=1 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK  L+ EG+R++K++TS+KKN+LNP YNEAL+FDV   +V +V L I V+DYD I
Sbjct: 465 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 524

Query: 129 GSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G       GR+HW EML NPR+PV  W+ L+E
Sbjct: 525 GHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 567

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9BQG1|SYT3_HUMAN Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1

 Score =  116 bits (291), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK  L+ EG+R++K++TS+KKN+LNP YNEAL+FDV   +V +V L I V+DYD I
Sbjct: 467 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 526

Query: 129 GSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G       GR+HW EML NPR+PV  W+ L+E
Sbjct: 527 GHNEVIGVCRVGPDAADPHGREHWAEMLANPRKPVEHWHQLVE 569

May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
307210708	477	Synaptotagmin-10 [Harpegnathos saltator]	0.634	0.257	0.784	5e-49
91080815	485	PREDICTED: similar to synaptotagmin X [T	0.628	0.251	0.774	9e-48
350417189	482	PREDICTED: synaptotagmin-9-like [Bombus	0.577	0.232	0.738	1e-46
307174193	440	Synaptotagmin-10 [Camponotus floridanus]	0.634	0.279	0.776	1e-46
332025324	415	Synaptotagmin-10 [Acromyrmex echinatior]	0.628	0.293	0.774	1e-46
340715026	482	PREDICTED: synaptotagmin-9-like [Bombus	0.577	0.232	0.738	2e-46
380019978	479	PREDICTED: synaptotagmin-9-like [Apis fl	0.639	0.258	0.730	2e-46
328788923	479	PREDICTED: synaptotagmin-9 [Apis mellife	0.639	0.258	0.730	2e-46
383855628	484	PREDICTED: synaptotagmin-9-like [Megachi	0.639	0.256	0.769	2e-46
345491983	483	PREDICTED: synaptotagmin-9 [Nasonia vitr	0.639	0.256	0.761	3e-45

>gi|307210708|gb|EFN87131.1| Synaptotagmin-10 [Harpegnathos saltator]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 110/125 (88%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+GKRI+KK+T+VKKNSL P YNEAL+FDVPA N+ DVSLI+KVIDYDRI
Sbjct: 328 SDPYVKVYLLCQGKRIKKKKTTVKKNSLYPVYNEALVFDVPADNIEDVSLIVKVIDYDRI 387

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           G +ELMGCTAIGSSFIGIGRDHWLEMLDNPR+PV QWYPLMETV G IP   S  LP SL
Sbjct: 388 GPNELMGCTAIGSSFIGIGRDHWLEMLDNPRKPVAQWYPLMETVAGHIPAVDSEPLPVSL 447

Query: 189 SCLNG 193
           SCLN 
Sbjct: 448 SCLNS 452

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080815|ref|XP_970240.1| PREDICTED: similar to synaptotagmin X [Tribolium castaneum] gi|270005424|gb|EFA01872.1| hypothetical protein TcasGA2_TC007477 [Tribolium castaneum]

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 113/124 (91%), Gaps = 2/124 (1%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+GKRI+KK+TSVKKN+LNP YNEAL+FDVPA N+ DVSLI+KVIDYDRI
Sbjct: 363 SDPYVKVYLLCQGKRIKKKKTSVKKNTLNPVYNEALVFDVPAENIEDVSLIVKVIDYDRI 422

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIGSSFIGIG+DHWLEMLDNPR PV QWYPL+E++PG IP + S+  P SL
Sbjct: 423 GSNELMGCTAIGSSFIGIGKDHWLEMLDNPRCPVAQWYPLLESIPGHIPANDST--PLSL 480

Query: 189 SCLN 192
           SCLN
Sbjct: 481 SCLN 484

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417189|ref|XP_003491300.1| PREDICTED: synaptotagmin-9-like [Bombus impatiens]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+ +RI+KK+TSVKKN+L P YNE L+FDVPA N+ DVSLI+KVIDYDRI
Sbjct: 357 SDPYVKVYLLCQDRRIKKKKTSVKKNTLFPVYNEILVFDVPAENIEDVSLIVKVIDYDRI 416

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIG+ FIGIGR+ WL+ML+NPR+PVTQWYPLMETVPG IP   S  LP SL
Sbjct: 417 GSNELMGCTAIGADFIGIGREQWLKMLENPRKPVTQWYPLMETVPGHIPAVSSEPLPVSL 476

Query: 189 SCLNGR 194
           SCLN R
Sbjct: 477 SCLNSR 482

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174193|gb|EFN64838.1| Synaptotagmin-10 [Camponotus floridanus]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 111/125 (88%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+GKRI+KK+T+VKKN+L P YNEAL+FDVPA N+ DVSLI+KVIDYDRI
Sbjct: 288 SDPYVKVYLLCQGKRIKKKKTTVKKNTLYPIYNEALVFDVPADNIEDVSLIVKVIDYDRI 347

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIGSSFIGIGRDHWLEMLDNPR+PV QWYPLMET+ G IP   S  LP SL
Sbjct: 348 GSNELMGCTAIGSSFIGIGRDHWLEMLDNPRKPVAQWYPLMETISGHIPAMDSDALPISL 407

Query: 189 SCLNG 193
           SCLN 
Sbjct: 408 SCLNS 412

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025324|gb|EGI65492.1| Synaptotagmin-10 [Acromyrmex echinatior]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 112/124 (90%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+GKRI+KK+T+VKKN+L P YNEAL+FDVP+ N+ DVSLI+KVIDYDRI
Sbjct: 288 SDPYVKVYLLCQGKRIKKKKTTVKKNTLYPIYNEALVFDVPSDNIEDVSLIVKVIDYDRI 347

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIGSSFIGIGRDHWLEMLDNPR+P+ QWYPLMETV G IP   S +LP SL
Sbjct: 348 GSNELMGCTAIGSSFIGIGRDHWLEMLDNPRKPIAQWYPLMETVAGHIPAVDSESLPVSL 407

Query: 189 SCLN 192
           SCLN
Sbjct: 408 SCLN 411

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715026|ref|XP_003396022.1| PREDICTED: synaptotagmin-9-like [Bombus terrestris]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 110/126 (87%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+ +RI+KK+TSVKKN+L P YNE L+FDVPA N+ DVSLI+KVIDYDRI
Sbjct: 357 SDPYVKVYLLCQDRRIKKKKTSVKKNTLFPVYNEILVFDVPAENIEDVSLIVKVIDYDRI 416

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIG+ FIGIGR+ WL+ML+NPR+PVTQWYPLMETVPG IP   S  LP SL
Sbjct: 417 GSNELMGCTAIGADFIGIGREQWLKMLENPRKPVTQWYPLMETVPGHIPSVSSEPLPVSL 476

Query: 189 SCLNGR 194
           SCLN R
Sbjct: 477 SCLNSR 482

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019978|ref|XP_003693876.1| PREDICTED: synaptotagmin-9-like [Apis florea]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 110/126 (87%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+ +RI+KK+TSVKKN+L P YNE L+FDVPA N+ DVSLI+KVIDYDRI
Sbjct: 354 SDPYVKVYLLCQDRRIKKKKTSVKKNTLFPVYNEILVFDVPAENIEDVSLIVKVIDYDRI 413

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIG+ FIGIGR+ WL+ML+NPR+PVTQWYPLMET+PG IP   S  LP SL
Sbjct: 414 GSNELMGCTAIGADFIGIGREQWLKMLENPRKPVTQWYPLMETIPGHIPSVSSEPLPVSL 473

Query: 189 SCLNGR 194
           SCLN R
Sbjct: 474 SCLNSR 479

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788923|ref|XP_003251208.1| PREDICTED: synaptotagmin-9 [Apis mellifera]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 110/126 (87%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+ +RI+KK+TSVKKN+L P YNE L+FDVPA N+ DVSLI+KVIDYDRI
Sbjct: 354 SDPYVKVYLLCQDRRIKKKKTSVKKNTLFPVYNEILVFDVPAENIEDVSLIVKVIDYDRI 413

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIG+ FIGIGR+ WL+ML+NPR+PVTQWYPLMET+PG IP   S  LP SL
Sbjct: 414 GSNELMGCTAIGADFIGIGREQWLKMLENPRKPVTQWYPLMETIPGHIPSVSSEPLPVSL 473

Query: 189 SCLNGR 194
           SCLN R
Sbjct: 474 SCLNSR 479

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855628|ref|XP_003703312.1| PREDICTED: synaptotagmin-9-like [Megachile rotundata]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/126 (76%), Positives = 112/126 (88%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+YL+C+GKRI+KK+T+VKKN+L P YNE L+FDVPA N+ DVSLIIKVIDYDRI
Sbjct: 359 SDPYVKIYLLCQGKRIKKKKTTVKKNTLCPVYNEILVFDVPADNIEDVSLIIKVIDYDRI 418

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIGSSFIGIGRDHWLEMLDNPR+PVTQWYPL ET+ G IP  +S  LP SL
Sbjct: 419 GSNELMGCTAIGSSFIGIGRDHWLEMLDNPRKPVTQWYPLTETIAGHIPAVNSEPLPVSL 478

Query: 189 SCLNGR 194
           SCLN R
Sbjct: 479 SCLNSR 484

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491983|ref|XP_001602728.2| PREDICTED: synaptotagmin-9 [Nasonia vitripennis]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 107/126 (84%), Gaps = 2/126 (1%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKVYL+C+GKRI+KK+TSVKK  L P YNEAL+FDVPA NV DVSLIIKVIDYDRI
Sbjct: 360 SDPYVKVYLLCQGKRIKKKKTSVKKGCLCPVYNEALVFDVPAENVEDVSLIIKVIDYDRI 419

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
           GS+ELMGCTAIG+SFIGIGRDHWLEMLDNPR+PV QWY L ETV G IP   +  LP SL
Sbjct: 420 GSNELMGCTAIGASFIGIGRDHWLEMLDNPRKPVAQWYTLSETVAGHIP--SADQLPVSL 477

Query: 189 SCLNGR 194
           SCL  R
Sbjct: 478 SCLTRR 483

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
UNIPROTKB|F1P5I7	464	SYT6 "Uncharacterized protein"	0.551	0.230	0.523	1.9e-39
UNIPROTKB|F1P1Z3	458	F1P1Z3 "Uncharacterized protei	0.541	0.229	0.518	1.9e-39
UNIPROTKB|E1C2V4	522	SYT10 "Uncharacterized protein	0.546	0.203	0.551	6.3e-38
UNIPROTKB|F5H2A8	342	SYT10 "Synaptotagmin-10" [Homo	0.546	0.309	0.542	1.9e-37
UNIPROTKB|F1PKU1	460	SYT9 "Uncharacterized protein"	0.525	0.221	0.5	1.9e-37
UNIPROTKB|F1RNF4	501	SYT9 "Uncharacterized protein"	0.541	0.209	0.504	2.4e-37
UNIPROTKB|J9P243	425	SYT6 "Uncharacterized protein"	0.525	0.24	0.529	2.4e-37
ZFIN|ZDB-GENE-090601-2	466	syt6a "synaptotagmin VIa" [Dan	0.530	0.221	0.524	2.4e-37
UNIPROTKB|F1MVI4	443	SYT9 "Uncharacterized protein"	0.525	0.230	0.5	3.1e-37
UNIPROTKB|F1MRP4	523	SYT10 "Uncharacterized protein	0.546	0.202	0.551	3.3e-37

UNIPROTKB|F1P5I7 SYT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 56/107 (52%), Positives = 86/107 (80%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+C+G+R++KK+T++KKN+LNP YNEA++FD+P  N++ VSL+I V+DYDR+
Sbjct:   339 SDPYVKVSLLCDGRRLKKKKTTIKKNTLNPTYNEAIIFDIPPENMDQVSLLISVMDYDRV 398

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             G +E++G   +G +  G+GRDHW EML  PR+P+  W+PL+E   G+
Sbjct:   399 GHNEIIGVCRVGVNAEGLGRDHWNEMLAYPRKPIAHWHPLVEQWQGR 445

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030276 "clathrin binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0060478 "acrosomal vesicle exocytosis" evidence=IEA

GO:0097038 "perinuclear endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1P1Z3 F1P1Z3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 55/106 (51%), Positives = 83/106 (78%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+CEG+R++K++TS K+N+LNP YNEA++FDVP  N++ ++L I V+DYDR+
Sbjct:   339 SDPYVKVSLMCEGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENIDQINLSIAVMDYDRV 398

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPG 174
             G +E++G   +G+    +GRDHW EML  PR+P+  W+PL E +PG
Sbjct:   399 GHNEVIGVCQVGNDAESLGRDHWNEMLSYPRKPIAHWHPLAE-IPG 443

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031045 "dense core granule" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|E1C2V4 SYT10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 343 (125.8 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
 Identities = 59/107 (55%), Positives = 85/107 (79%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+CEG+R++K++T+ KKN+LNP YNEA++FD+P  NV+ VSL I V+DYDR+
Sbjct:   398 SDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRV 457

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             G +E++G    G    G+GRDHW EML  PR+P+T W+PL+E +PG+
Sbjct:   458 GHNEVIGVCRTGIDAEGLGRDHWNEMLAYPRKPITHWHPLVE-LPGR 503

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

UNIPROTKB|F5H2A8 SYT10 "Synaptotagmin-10" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 58/107 (54%), Positives = 84/107 (78%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+CEG+R++K++T+ KKN+LNP YNEA++FD+P  NV+ VSL I V+DYDR+
Sbjct:   218 SDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRV 277

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             G +E++G    G    G+GRDHW EML   R+P+T W+PL+E +PG+
Sbjct:   278 GHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWHPLLE-LPGR 323

GO:0005215 "transporter activity" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

UNIPROTKB|F1PKU1 SYT9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 317 (116.6 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 51/102 (50%), Positives = 79/102 (77%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+C+G+R++K++TS K+N+LNP YNEA++FDVP  N++ + L I V+DYDR+
Sbjct:   357 SDPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENIDQIHLSIAVMDYDRV 416

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
             G +E++G   +G+    +GRDHW EML  PR+P+  W+ L+E
Sbjct:   417 GHNEIIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLVE 458

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1RNF4 SYT9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 53/105 (50%), Positives = 80/105 (76%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+CEG+R++K++TS K+N+LNP YNEA++FDVP  N++ + L I V+DYDR+
Sbjct:   388 SDPYVKVSLMCEGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENIDQIHLSIAVMDYDRV 447

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVP 173
             G +E++G   +G+    +GRDHW EML  PR+P+  W+ L+E  P
Sbjct:   448 GHNEIIGVCQVGNDAERLGRDHWSEMLSYPRKPIAHWHALVEVRP 492

GO:0042802 "identical protein binding" evidence=IEA

GO:0031045 "dense core granule" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|J9P243 SYT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 54/102 (52%), Positives = 83/102 (81%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+C+G+R++KK+T++KKN+LNP YNEA++FD+P  N++ VSL+I V+DYDR+
Sbjct:   312 SDPYVKVSLLCDGRRLKKKKTTIKKNTLNPVYNEAIIFDIPPENMDQVSLLISVMDYDRV 371

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
             G +E++G   +G +  G+GRDHW EML  PR+P+  W+ L+E
Sbjct:   372 GHNEIIGVCRVGINAEGLGRDHWNEMLAYPRKPIAHWHSLVE 413

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ZFIN|ZDB-GENE-090601-2 syt6a "synaptotagmin VIa" [Danio rerio (taxid:7955)]

 Score = 328 (120.5 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
 Identities = 54/103 (52%), Positives = 81/103 (78%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             A+PYVKV L+C+G+R++KK+T+ KKN+LNP YNEA++FD+P  +++ VSL I V+DYD +
Sbjct:   353 ADPYVKVSLICDGRRLKKKKTTTKKNTLNPTYNEAIIFDIPPESMDQVSLHISVMDYDLV 412

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMET 171
             G +E++G   +G    G+GRDHW EML  PR+P+  W+PL+E+
Sbjct:   413 GHNEIIGVCRLGCGAEGLGRDHWNEMLAYPRKPIAHWHPLLES 455

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1MVI4 SYT9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 51/102 (50%), Positives = 78/102 (76%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+C+G+R++K++TS K+N+LNP YNEA++FDVP  N++ + L I V+DYDR+
Sbjct:   340 SDPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENIDQIHLSIAVMDYDRV 399

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
             G +E++G   +G+    +GRDHW EML  PR+P+  W+ L E
Sbjct:   400 GHNEIIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLAE 441

GO:0042802 "identical protein binding" evidence=IEA

GO:0031045 "dense core granule" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1MRP4 SYT10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
 Identities = 59/107 (55%), Positives = 84/107 (78%)

Query:    69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             ++PYVKV L+CEG+R++KK+T+ KKN+LNP YNEA++FD+P  NV+ VSL I V+DYDR+
Sbjct:   399 SDPYVKVSLMCEGRRLKKKKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRV 458

Query:   129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             G +E++G    G    G+GRDHW EML   R+P+T W+PL+E +PG+
Sbjct:   459 GHNEVIGVCRTGLDAKGLGRDHWNEMLTYHRKPITHWHPLLE-LPGR 504

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	194
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	4e-57
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	1e-44
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	6e-38
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	8e-32
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	8e-30
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	2e-26
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-20
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	5e-20
pfam00168	85	pfam00168, C2, C2 domain	3e-18
cd00030	102	cd00030, C2, C2 domain	3e-18
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	9e-18
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	4e-16
smart00239	101	smart00239, C2, Protein kinase C conserved region	5e-16
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	2e-15
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-14
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	5e-12
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	1e-11
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	1e-11
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	7e-11
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	1e-10
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	7e-10
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	7e-10
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	8e-10
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-09
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	1e-09
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	3e-09
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	3e-09
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	3e-09
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	4e-09
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	5e-09
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	7e-09
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	1e-08
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-08
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	6e-08
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	1e-07
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	2e-07
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	6e-07
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	7e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	8e-07
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	8e-07
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	3e-06
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	3e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-06
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	4e-06
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	6e-06
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	7e-06
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	9e-06
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	1e-05
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	1e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-05
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	1e-05
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-05
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	5e-05
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	6e-05
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	6e-05
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	7e-05
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	8e-05
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	8e-05
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-04
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	2e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-04
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	2e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-04
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-04
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	3e-04
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	4e-04
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	4e-04
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	4e-04
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	7e-04
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	7e-04
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	0.001
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	0.001
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	0.001
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	0.002
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	0.002
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.003
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	0.003
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	0.003
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	0.003
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	0.004

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score =  176 bits (447), Expect = 4e-57
 Identities = 62/100 (62%), Positives = 83/100 (83%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+CEG+R++KK+TSVKKN+LNP YNEAL+FDVP  NV++VSLII V+DYDR+
Sbjct: 35  SDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRV 94

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G +EL+G   +G +  G GR+HW EML NPR+P+ QW+ L
Sbjct: 95  GHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWHQL 134

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score =  144 bits (365), Expect = 1e-44
 Identities = 48/100 (48%), Positives = 72/100 (72%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L+  GK+++KK+TSVKK +LNP +NEA  FDVPA  + +VSL+I V+D D +
Sbjct: 35  SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G +E++G   +G    G   +HW EML +PR+P+ +W+ L
Sbjct: 95  GRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARWHKL 134

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score =  127 bits (321), Expect = 6e-38
 Identities = 45/100 (45%), Positives = 72/100 (72%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK++L+  GKR++KK+T++KK +LNP+YNE+  F+VP   +  V LI+ V+DYDRI
Sbjct: 36  SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRI 95

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G ++ +G   +G +  G    HW +ML +PR+P+ QW+ L
Sbjct: 96  GKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTL 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score =  111 bits (280), Expect = 8e-32
 Identities = 43/100 (43%), Positives = 69/100 (69%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + KR+ KK+T +KK +LNP +NE+ +F++P   + + +LII V+D DR+
Sbjct: 36  SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRL 95

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
             ++L+G   +G    G+   HW +ML  PRQPV QW+ L
Sbjct: 96  SRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHRL 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score =  106 bits (266), Expect = 8e-30
 Identities = 42/101 (41%), Positives = 65/101 (64%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            A+PYVKV L    KRI KK+T VKK +LNP +NE+ +FD+P+  + D+S+   V+D DR
Sbjct: 35  LADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           +  +E++G   +G    G G  HW E+ + PR+ + +W+ L
Sbjct: 95  VTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHML 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 97.9 bits (244), Expect = 2e-26
 Identities = 44/100 (44%), Positives = 67/100 (67%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           A+P+VKVYL+ +G++I KK+TSVK++  NP +NEA++F VPA  + D+SL + V +    
Sbjct: 36  ADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G    +G   IG +  G+G  HW +ML + R+PV  W+PL
Sbjct: 96  GKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPL 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 82.8 bits (205), Expect = 1e-20
 Identities = 34/98 (34%), Positives = 55/98 (56%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           P+VK+YL  +  +  K +T VKK +LNP +NE   +D+  S++   +L I V D D   S
Sbjct: 36  PFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKS 95

Query: 131 DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           ++ +G   +G +  G    HWL+ L NP + +  W+ L
Sbjct: 96  NDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 81.5 bits (201), Expect = 5e-20
 Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++P+VK+ LV   K I+ K+TS  + +++PFYNE+  F VP   + +VSL+  V  ++  
Sbjct: 35  SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVK 94

Query: 129 GSDELMGCTAIGSSFIGIGR-DHWLEMLDNPRQPVTQWYPL 168
            S++ +G   IG    G    +HW  ML++ R  V QW+ L
Sbjct: 95  SSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 75.0 bits (185), Expect = 3e-18
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYVKV L   G++   K+T V KN+LNP +NE   F+V    + +  L I+V DYDR G
Sbjct: 21  DPYVKVSLG--GQKKDTKKTKVVKNTLNPVWNETFTFEVTLPELAE--LRIEVYDYDRFG 76

Query: 130 SDELMGCT 137
            D+ +G  
Sbjct: 77  KDDFIGEV 84

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 75.6 bits (186), Expect = 3e-18
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 17/99 (17%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYVKV L       +K +T V KN+LNP +NE   F V   +    +L ++V D DR  
Sbjct: 21  DPYVKVSL----GGKQKFKTKVVKNTLNPVWNETFEFPVL--DPESDTLTVEVWDKDRFS 74

Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
            D+ +G   I            L  L +  +    W PL
Sbjct: 75  KDDFLGEVEIP-----------LSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 75.4 bits (185), Expect = 9e-18
 Identities = 33/96 (34%), Positives = 58/96 (60%)

Query: 73  VKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDE 132
           VKV L  +  +++KK+T   K+ +NP +NE ++F++P+  +   S+ ++V++ D  G   
Sbjct: 42  VKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSL 101

Query: 133 LMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
            +G  ++G    G  R HW EMLDNPR+ +  W+ L
Sbjct: 102 PLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQL 137

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 70.8 bits (174), Expect = 4e-16
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
            + YVKV L+   K ++ K+T V   + +P +NE+  F V +  ++  SL + V+    +
Sbjct: 35  TSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94

Query: 129 GSDELMGCTAIGSSFIGIGRD--HWLEMLDNPRQPVTQWYPL 168
              +L+G   +G      G++  HW +ML  P++ + +W+ L
Sbjct: 95  RKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL 136

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 69.8 bits (171), Expect = 5e-16
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYVKV L  +G    KK+T V KN+LNP +NE   F+VP        L I+V D DR G
Sbjct: 22  DPYVKVSL--DGDPKEKKKTKVVKNTLNPVWNETFEFEVP--PPELAELEIEVYDKDRFG 77

Query: 130 SDELMGCTAIG 140
            D+ +G   I 
Sbjct: 78  RDDFIGQVTIP 88

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 28/105 (26%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 66  DVPANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVID 124
           +   + YVK+ L+  +G+ I K +TS+++   +P + E  +F V    +++V+L+  V +
Sbjct: 33  NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92

Query: 125 YDRIGSDELMGCTAIGSSFIGIGR-DHWLEMLDNPRQPVTQWYPL 168
             ++   E++G  ++G +  G    +HW EM ++  Q V +W+ L
Sbjct: 93  KRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTL 137

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 65.4 bits (160), Expect = 6e-14
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + K   K++T   K +LNP +NE   FD+  ++  D  L I+V D+DR 
Sbjct: 34  SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDWDRT 92

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
             ++ MG  + G S          E++   + PV  WY L+
Sbjct: 93  TRNDFMGSLSFGVS----------ELI---KMPVDGWYKLL 120

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 59.8 bits (145), Expect = 5e-12
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           NPYVK YL+ +  R  K++TS+K+N+ NP YNE L + +  S +   +L + V  YDR G
Sbjct: 38  NPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFG 97

Query: 130 SDELMG 135
            +  +G
Sbjct: 98  RNTFLG 103

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 18/102 (17%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           NPYVKVYL+ +  +  K++TSVKKN+ NP +NE L + +  S +   +L + V  +DR G
Sbjct: 37  NPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFG 96

Query: 130 SDELMGCTAIGSSFIG---IGRDHWLEMLDNPRQPVTQWYPL 168
            +          +F+G   I  D W   LD+ +   ++WYPL
Sbjct: 97  RN----------TFLGEVEIPLDSWD--LDSQQ---SEWYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYVK YL+ +     K++TSVKK +LNP +NE L + V    +    L + V   D +G
Sbjct: 38  DPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLG 97

Query: 130 SDELMG 135
            +  +G
Sbjct: 98  RNSFLG 103

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 56.4 bits (137), Expect = 7e-11
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV--PASNVNDVSLIIKVIDYDR 127
           +P VKV  V      +KK TSVKK +  PFYNE   F+       + D  + I V D   
Sbjct: 22  DPVVKVE-VGG----QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76

Query: 128 IGSDELMG 135
           + SD L+G
Sbjct: 77  LRSDTLIG 84

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 71  PYVKVYLVCEGK--RIRKKRTSVKKNSLNPFYNEALLFDVPAS--NVNDVSLIIKVIDYD 126
           P+VKV L+       +   +T VKK +L P ++E+  F+VP    +V    L+  V DYD
Sbjct: 39  PFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYD 98

Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164
            +GS++  G   +  + I    D           P+ Q
Sbjct: 99  LLGSNDFEGEAFLPLNDIPGVEDTSSA---QGFGPLPQ 133

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 54.4 bits (131), Expect = 7e-10
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
          DPYVK YL+ +     K++TSVKK +LNP +NE L + V 
Sbjct: 38 DPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVE 77

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 18/104 (17%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF-DVPASNVNDVSLIIKVIDYD 126
             NPYVKVYL+ +     K+RT   K +LNP +N+   + +V    + + +L + V DYD
Sbjct: 36  LRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95

Query: 127 RIGSDELMGCTAI--GSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           R G ++ +G   I    +            LD+  +P   WYPL
Sbjct: 96  RDGENDFLGEVVIDLADAL-----------LDD--EP--HWYPL 124

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRI 128
           +P+VK+YL+ + K   K  T VK+ +LNP +NE  LF+  P   +    L ++V+DYDR 
Sbjct: 38  DPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95

Query: 129 GSDELMG 135
             ++ +G
Sbjct: 96  SRNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKV 122
            +PYV++YL+ +  +  +++TSVKK++LNP ++E   F V    +   +L + V
Sbjct: 37  PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 17/41 (41%), Positives = 29/41 (70%)

Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
           DPYV++YL+ +  +  +++TSVKK++LNP ++E   F V 
Sbjct: 37 PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF-DVPASNVNDVSLIIKVIDYDR 127
           ++PYVK+ L+    +  K RT     + NP +NE L +  +   ++   +L + V+D DR
Sbjct: 36  SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95

Query: 128 IGSDELMGCTAIGSSFIGIGR 148
            G+D           F+G  R
Sbjct: 96  FGND-----------FLGETR 105

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 6/65 (9%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           P+VK YL   G+++ K  T   K +LNP +NE+    VP S V  V L ++V D+DR G 
Sbjct: 22  PFVKFYL--NGEKVFK--TKTIKKTLNPVWNESFEVPVP-SRVRAV-LKVEVYDWDRGGK 75

Query: 131 DELMG 135
           D+L+G
Sbjct: 76  DDLLG 80

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
             +P+VKV L+ + +R  +  + VK+ + NP ++E  +F V    +   +L + V D DR
Sbjct: 35  HCDPFVKVCLLPDERRSLQ--SKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92

Query: 128 IGSDELMG 135
                ++G
Sbjct: 93  FSRHCIIG 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 14/103 (13%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRI 128
           + +VK YL+ +  +  K++T V K S+NP +N   ++D V   +++   L + V D+D++
Sbjct: 49  DSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKL 108

Query: 129 GSDELMGCTAIGS-SFIGIGR------------DHWLEMLDNP 158
            S++ +G   +G  +    G+              W +MLDNP
Sbjct: 109 SSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNP 151

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 67  VPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYD 126
           V   PYVKVYL+   K I KK+T + + +L+P Y + L+FDV  S       +I   DY 
Sbjct: 49  VLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV--SPTGKTLQVIVWGDYG 106

Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMET 171
           R+     MG   I            L+ LD     V  WY L  T
Sbjct: 107 RMDKKVFMGVAQI-----------LLDDLD-LSNLVIGWYKLFPT 139

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
          +PYVKVYL+ +  +  K++TSVKKN+ NP +NE L + + 
Sbjct: 37 NPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHIS 76

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           PYVKVYL+ + K+  K  T V + +LNP +NE   F VP S + + +L+  V D+DR   
Sbjct: 39  PYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK 96

Query: 131 DELMG 135
            +L+G
Sbjct: 97  HDLIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 49.8 bits (120), Expect = 3e-08
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 70  NPYVKVYLVCEG-KRIRKKRTS-VKKNSLNPFYNEALLFDVPASNVNDVSLI-IKVIDYD 126
           +PYV+V +         K +T  VK N  NP +NE   FDV    V +++ +   V D D
Sbjct: 26  DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDV---TVPELAFLRFVVYDED 82

Query: 127 RIGSD 131
               D
Sbjct: 83  SGDDD 87

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 15/101 (14%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRI 128
           +PYVK YL+ + ++  K++T V + + NP +NE L++D +P  ++    L + V  +D +
Sbjct: 34  DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLD-NPRQPVTQWYPL 168
             +E +G   I              +   +  Q   +WYPL
Sbjct: 94  VENEFLGGVCI-------------PLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 86  KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGC 136
           KK+T V +N LNP +NE   + +  S   D SL I V DY+++G + L+G 
Sbjct: 27  KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS 77

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
          +PYVK YL+ +  R  K++TS+K+N+ NP YNE L + + 
Sbjct: 38 NPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSIS 77

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 11/68 (16%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVS--LIIKVIDYDR 127
           +PYVK      GK + K +T + KN LNP ++E   F +P   + DV+  L IKV DYDR
Sbjct: 22  DPYVKFKY--GGKTVYKSKT-IYKN-LNPVWDEK--FTLP---IEDVTQPLYIKVFDYDR 72

Query: 128 IGSDELMG 135
             +D+ MG
Sbjct: 73  GLTDDFMG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
          +DPYVK+ L+    +  K RT     + NP +NE L +
Sbjct: 36 SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY 73

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 45.6 bits (109), Expect = 8e-07
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 25/107 (23%)

Query: 34  VYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK-KRTSVK 92
           V L   GK++ KK    K                 ++P++++    E        RT V 
Sbjct: 3   VELQFSGKKLDKKDFFGK-----------------SDPFLEISRQSEDGTWVLVYRTEVI 45

Query: 93  KNSLNPFYNEALLFDVPASNVN----DVSLIIKVIDYDRIGSDELMG 135
           KN+LNP +     F +P   +     D  + I+V DYD  G  +L+G
Sbjct: 46  KNTLNPVWKP---FTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIG 89

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           A+PY KV L+ +      K++ + K +LNP ++E+ +F+VP   +   +L + + D+D+ 
Sbjct: 37  ADPYCKVRLLPDRSNT--KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94

Query: 129 GSDELMG 135
             DE +G
Sbjct: 95  SRDECIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 30 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV 67
          PYVKVYL+   K I KK+T + + +L+P Y + L+FDV
Sbjct: 53 PYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN 70
          DPYVKVYL+ + K+  K  T V + +LNP +NE   F VP +
Sbjct: 38 DPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFTFKVPYS 77

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           PYV + L  +     K +T V K +LNP +NE L   VP  N     L ++V D D    
Sbjct: 24  PYVVLTLGNQ-----KVKTRVIKKNLNPVWNEELTLSVP--NPMAP-LKLEVFDKDTFSK 75

Query: 131 DELMG 135
           D+ MG
Sbjct: 76  DDSMG 80

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 88  RTSVKKNSLNP-FYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI 146
           +T V K SLNP + +E   F+V    + D  L I+V+D+D   +++     AIG  +I +
Sbjct: 35  KTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND-----AIGKVYIDL 89

Query: 147 GRDHWLEMLDNPRQPVTQWYPLMET 171
                  +L +    ++ W+P+ +T
Sbjct: 90  N----PLLLKDSVSQISGWFPIYDT 110

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 11 ADNYCRPTIGNRSIPSVADPYVKVYLVCEG-KRIRKKRTS-VKKNSLNPFYNEALLFDV 67
               +P     SI    DPYV+V +         K +T  VK N  NP +NE   FDV
Sbjct: 11 GQQLPKPKGDKGSIV---DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDV 66

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAS 111
           +PYVKV L+ +     K++T+VKK ++NP +NE L + V A 
Sbjct: 38  HPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 81  GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           G+R+   RTS ++++LNP +NE L F+V     N   +  KV+D D+ 
Sbjct: 35  GRRVF--RTSWRRHTLNPVFNERLAFEVYPHEKN-FDIQFKVLDKDKF 79

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKV 75
          DP+VK+YL+ + K   K  T VK+ +LNP +NE  LF+    PY K+
Sbjct: 38 DPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFE--GFPYEKL 80

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 24/108 (22%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD---VPAS----NVNDVSLIIKVI 123
           P+ +V  + + +      T V K +L+P +++ L+FD   +  S      N   +++++ 
Sbjct: 24  PFARVSFLNQSQE-----TEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78

Query: 124 DYDRIGSDELMG-CTAIGSSFIGIGRDHWLEMLDNPRQPVT-QWYPLM 169
           D D +G DE +G   A             +++      P   QW+P+ 
Sbjct: 79  DQDSVGKDEFLGRSVAKPL----------VKLDLEEDFPPKLQWFPIY 116

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEAL-LFDVPASNVNDVSLIIKVIDYDR 127
           ++PYVK+ L+ E +   K +T V + + NP Y+E    + +P + + D+SL   V+ +DR
Sbjct: 38  SDPYVKLQLLPEKEH--KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95

Query: 128 IGSDELMG 135
              D+++G
Sbjct: 96  YSRDDVIG 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 18/99 (18%)

Query: 70  NPYVKVYL----VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDY 125
           +PY  V L    V         RT   +  LNPF+ E  +FD P  +V   +L     D 
Sbjct: 19  DPYCTVSLDQVEVA--------RTKTVE-KLNPFWGEEFVFDDPPPDVTFFTLSFYNKDK 69

Query: 126 DRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ 164
                D ++G  A+    +G G+D W      P  PV  
Sbjct: 70  RSKDRDIVIGKVALSKLDLGQGKDEWF-----PLTPVDP 103

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 24/110 (21%)

Query: 71  PYVKVYLVCEGKRI--RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           PYV V       R+  +  ++ V K +LNP +NE  +++     V    L I++ D D  
Sbjct: 30  PYVIV-------RVGAQTFKSKVIKENLNPKWNE--VYEAVVDEVPGQELEIELFDED-P 79

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPL 178
             D+ +G  +I    +        +        + +W PL +   G++ L
Sbjct: 80  DKDDFLGRLSIDLGSV-------EKK-----GFIDEWLPLEDVKSGRLHL 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PY+K+ L    K+I  +   +    LNP + +  +F++ A+   +  L I V+DYD +
Sbjct: 21  SDPYLKIKL--GKKKINDRDNYIPNT-LNPVFGK--MFELEATLPGNSILKISVMDYDLL 75

Query: 129 GSDELMGCTAI 139
           GSD+L+G T I
Sbjct: 76  GSDDLIGETVI 86

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 24/113 (21%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYN---EALLFDVPASNVNDVSLIIKVIDYD 126
           +PY ++YL   GK +    T VKK + NP +N   E L+ D   S      + + V D D
Sbjct: 14  SPYAELYL--NGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKS-----RVTVVVKD-D 63

Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
           R   D ++G  +I  +          +++D       QW+PL     G+I +S
Sbjct: 64  RDRHDPVLGSVSISLN----------DLIDA-TSVGQQWFPLSGNGQGRIRIS 105

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN 70
          DP+VKV L+ + +R  +  + VK+ + NP ++E  +F V   
Sbjct: 37 DPFVKVCLLPDERRSLQ--SKVKRKTQNPNFDETFVFQVSFK 76

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 88  RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI- 146
           RT   + SL PF+ E   F++P +  +   L   + D D +  D ++G  AI    +   
Sbjct: 37  RTKTVEKSLCPFFGEDFYFEIPRTFRH---LSFYIYDRDVLRRDSVIGKVAIKKEDLHKY 93

Query: 147 -GRDHWLEMLDNPRQPVTQ 164
            G+D W      P QPV  
Sbjct: 94  YGKDTWF-----PLQPVDA 107

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 30 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA 69
          PYVKV L+ +     K++T+VKK ++NP +NE L + V A
Sbjct: 39 PYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 26 SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 66
          S  DPYVK YL+ + ++  K++T V + + NP +NE L++D
Sbjct: 31 SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYD 71

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYV+V +      I K RT    N+LNP ++E L   VP ++ N   + ++V+DY+++G
Sbjct: 23  DPYVRVLV----NGIVKGRTVTISNTLNPVWDEVLY--VPVTSPNQK-ITLEVMDYEKVG 75

Query: 130 SDELMGCTAI 139
            D  +G   I
Sbjct: 76  KDRSLGSVEI 85

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 68  PANPYVKVYL--VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDY 125
             + YV+++L    + K    KRT   KNS+NP +NE   F +  S V +V L + V+D 
Sbjct: 20  TPDCYVELWLPTASDEK----KRTKTIKNSINPVWNETFEFRIQ-SQVKNV-LELTVMDE 73

Query: 126 DRIGSDEL 133
           D +  D L
Sbjct: 74  DYVMDDHL 81

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 71  PYVKVYLV--CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           PYVK+ L        I   +T   K +LNP +NE   F V   N  +  L+ +V D +R+
Sbjct: 23  PYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV---NPREHRLLFEVFDENRL 79

Query: 129 GSDELMG 135
             D+ +G
Sbjct: 80  TRDDFLG 86

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV 67
          DP+V +     G+R+   RTS ++++LNP +NE L F+V
Sbjct: 27 DPFVIISF---GRRVF--RTSWRRHTLNPVFNERLAFEV 60

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 76  YLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMG 135
           Y+          +T VKKN+LNP +NE   F +  ++  D  L + + D++   SD+++G
Sbjct: 462 YITVTFSDRVIGKTRVKKNTLNPVWNET--FYILLNSFTD-PLNLSLYDFNSFKSDKVVG 518

Query: 136 CTAIG 140
            T + 
Sbjct: 519 STQLD 523

Length = 1227

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVND---VSLIIKVID 124
             N YVK+ L  + +   +++TS   +S NP ++E   FDV   +      V++  K+  
Sbjct: 31  TCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90

Query: 125 YDRIGSDELMGCTAIG 140
                   L+GC + G
Sbjct: 91  SRD---SGLLGCMSFG 103

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 71   PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASN-VNDVSLIIKVIDYDRIG 129
            P+VK++L    K + K  T V K +LNP +NE   F +   N V DV L I V D+D   
Sbjct: 1063 PFVKLFL--NEKSVYK--TKVVKKTLNPVWNEE--FTIEVLNRVKDV-LTINVNDWDSGE 1115

Query: 130  SDELMGCTAI 139
             ++L+G   I
Sbjct: 1116 KNDLLGTAEI 1125

Length = 1227

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 44/158 (27%)

Query: 29  DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR 88
           DP+ +V L     +   KRT VKK + NP ++EA  F+           +  G    KK 
Sbjct: 20  DPFARVTL-NYSSKTDTKRTKVKKKTNNPRFDEAFYFE-----------LTIGFSYEKKS 67

Query: 89  TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR 148
                            F V   ++    L +++     +  D+ +G   I         
Sbjct: 68  -----------------FKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIP-------- 102

Query: 149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPS 186
              L+ L         WY L    P + P + SSN  S
Sbjct: 103 ---LQGLQQ-AGSHQAWYFLQ---PREAPGTRSSNDGS 133

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 65  FDVPANPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVPASNVNDVS-LIIKV 122
           F    +PYV   + C   R +++++ V K    NP +NE   F V        + LI+++
Sbjct: 18  FLGKIDPYVI--IQC---RTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRI 72

Query: 123 IDYDRIGSDELMGCTAI 139
           +D D    D+ +G   I
Sbjct: 73  MDKDNFSDDDFIGEATI 89

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 10/73 (13%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVS-LIIKVIDYD 126
             +PYV+V    +G+  +K  T V K + NP +NE          V   S L  KV  + 
Sbjct: 21  KPDPYVEV--TVDGQPPKK--TEVSKKTSNPKWNEHF-----TVLVTPQSTLEFKVWSHH 71

Query: 127 RIGSDELMGCTAI 139
            + +D L+G  ++
Sbjct: 72  TLKADVLLGEASL 84

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 19/82 (23%)

Query: 87  KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI 146
           K T VK  +LNP +NE   F+V   +V++  L + + D+D    D+ +GC  I       
Sbjct: 91  KVTEVKPQTLNPVWNETFRFEV--EDVSNDQLHLDIWDHD----DDFLGCVNIPLK---- 140

Query: 147 GRDHWLEMLDNPRQPVTQWYPL 168
                    D P   +  W+ L
Sbjct: 141 ---------DLPSCGLDSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLV 78
          DPY  V L+   K+   KRT VKK + NP ++EA  FDV  +   +    
Sbjct: 20 DPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQF 69

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 25/131 (19%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLI-IKVIDYDR- 127
           +PY  V L+   K+   KRT VKK + NP ++EA  FDV   +  +     +   D ++ 
Sbjct: 20  DPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79

Query: 128 -----------IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME-TVPGQ 175
                       G D  +G   I            L  LD        WY L        
Sbjct: 80  ELRVDLWHASMGGGDVFLGEVRIP-----------LRGLDLQAGSHQAWYFLQPREEKST 128

Query: 176 IPLSHSSNLPS 186
            P + SS   S
Sbjct: 129 PPGTRSSKDNS 139

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
              +VK  L   G ++ + R S  +N  NP +NE L+F V A    D  LI+ V D    
Sbjct: 21  PEVFVKAQL---GNQVLRTRPSQTRN-GNPSWNEELMF-VAAEPFED-HLILSVEDRVGP 74

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
             DE +G   I  + I        E   + R   ++W+ L 
Sbjct: 75  NKDEPLGRAVIPLNDI--------ERRVDDRPVPSRWFSLE 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 22 RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN 70
          R     ADPY KV L+ +      K++ + K +LNP ++E+ +F+VP  
Sbjct: 31 RDFSGTADPYCKVRLLPDRSNT--KQSKIHKKTLNPEFDESFVFEVPPQ 77

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANP 71
          DPYV + L  +     K +T V K +LNP +NE L   VP NP
Sbjct: 23 DPYVVLTLGNQ-----KVKTRVIKKNLNPVWNEELTLSVP-NP 59

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 19 IGNRSIPSVA----DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVK 74
          +  + + S      + YVK+ L  + +   +++TS   +S NP ++E   FDV    Y K
Sbjct: 19 LEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQK 78

Query: 75 VYLVCEGKRIRKKRTS 90
            LV    ++ K R S
Sbjct: 79 RLLVTVWNKLSKSRDS 94

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++PY  +      +R +   T    N+LNP +N     + P  +  +  L + + D DR
Sbjct: 23  KSDPYAILS--VGAQRFK---TQTIPNTLNPKWNYW--CEFPIFSAQNQLLKLILWDKDR 75

Query: 128 IGSDELMG--CTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSH 180
               + +G    A+   F            D       +W  L  T PG+  +  
Sbjct: 76  FAGKDYLGEFDIALEEVF-----------ADGKTGQSDKWITLKSTRPGKTSVVS 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYV   +     R    RT VKK++ NP +NE     V  +++ +  L + V D++   
Sbjct: 25  DPYVTFSI---SNRRELARTKVKKDTSNPVWNETKYILV--NSLTE-PLNLTVYDFNDKR 78

Query: 130 SDELMG 135
            D+L+G
Sbjct: 79  KDKLIG 84

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVND 115
           ++ YV++    +G++   KRT  K   LNP +NE L+F+V   +   
Sbjct: 21  SSAYVELDF--DGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLS 62

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 9/67 (13%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           A+PYV +   CEG+ +R   + V+K++L+P ++   +F           + I+V + + +
Sbjct: 24  ADPYVIIK--CEGESVR---SPVQKDTLSPEFDTQAIF---YRKKPRSPIKIQVWNSNLL 75

Query: 129 GSDELMG 135
             DE +G
Sbjct: 76  -CDEFLG 81

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 5/38 (13%)

Query: 28 ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLF 65
          ADPYV +   CEG+ +R   + V+K++L+P ++   +F
Sbjct: 24 ADPYVIIK--CEGESVR---SPVQKDTLSPEFDTQAIF 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 13/86 (15%)

Query: 86  KKRTSVKKNSLNPFYNEALLFDVP---ASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSS 142
           K  TSVK+ + +P + E   F++P   + N N  +L + V+  + +G D+ +G  +I  +
Sbjct: 32  KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLN 91

Query: 143 FIGIGRDHWLEMLDNPRQPVTQWYPL 168
                     ++ ++  +  T+W+ L
Sbjct: 92  ----------DLDEDKGRRRTRWFKL 107

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 23/86 (26%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDV------SLIIKVI 123
           +PYV+V     G+   K +TSVKKNS NP +NE ++F        ++       + I++ 
Sbjct: 36  DPYVEVSFA--GQ---KVKTSVKKNSYNPEWNEQIVF-------PEMFPPLCERIKIQIR 83

Query: 124 DYDRIGSDELMGCTAIGSSFIGIGRD 149
           D+DR+G+D+      IG+ FI + + 
Sbjct: 84  DWDRVGNDD-----VIGTHFIDLSKI 104

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
KOG1028|consensus	421		100.0
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.97
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.97
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.96
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.96
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.95
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.95
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.94
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.94
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.94
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.94
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.94
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.91
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.91
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.9
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.9
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.89
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.89
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.89
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.88
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.88
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.88
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.87
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.86
KOG0696|consensus	683		99.85
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.85
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.84
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.84
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.84
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.84
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.84
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.84
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.84
KOG2059|consensus	800		99.83
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.83
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.83
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.83
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.83
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.82
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.82
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.81
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.8
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.8
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.79
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.79
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.79
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.79
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.79
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.78
KOG1030|consensus	168		99.78
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.78
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.78
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.77
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.77
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.77
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.77
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.77
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.76
KOG1013|consensus	362		99.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.75
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.75
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.75
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.75
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.74
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.74
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.74
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.74
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.73
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.73
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.72
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.72
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.7
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.7
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.68
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.68
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.68
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.67
KOG1011|consensus	1283		99.67
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.65
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.64
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.63
KOG1028|consensus	421		99.61
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.6
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.6
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.59
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.59
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.57
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.57
PLN03008	868	Phospholipase D delta	99.49
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.46
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.43
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.39
KOG1328|consensus	1103		99.33
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.27
KOG1326|consensus	1105		99.26
PLN02223	537	phosphoinositide phospholipase C	99.26
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.25
KOG1328|consensus	1103		99.24
PLN02230	598	phosphoinositide phospholipase C 4	99.18
PLN02222	581	phosphoinositide phospholipase C 2	99.16
PLN02952	599	phosphoinositide phospholipase C	99.16
KOG0169|consensus	746		99.14
PLN02228	567	Phosphoinositide phospholipase C	99.06
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.06
KOG1031|consensus	1169		99.05
KOG1326|consensus	1105		99.01
PLN02270	808	phospholipase D alpha	98.86
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.84
KOG0905|consensus	1639		98.81
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	98.7
KOG1011|consensus	1283		98.67
KOG1264|consensus	1267		98.65
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.62
PLN03008	868	Phospholipase D delta	98.51
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	98.51
KOG2059|consensus	800		98.51
KOG1013|consensus	362		98.49
KOG1327|consensus	529		98.42
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.38
PLN02352	758	phospholipase D epsilon	98.26
PLN02223	537	phosphoinositide phospholipase C	98.2
KOG2060|consensus	405		98.19
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.01
PLN02952	599	phosphoinositide phospholipase C	97.98
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	97.88
PLN02230	598	phosphoinositide phospholipase C 4	97.87
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	97.86
PLN02222	581	phosphoinositide phospholipase C 2	97.82
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	97.82
KOG0905|consensus	1639		97.8
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	97.74
PLN02228	567	Phosphoinositide phospholipase C	97.66
KOG0169|consensus	746		97.58
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	97.57
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	97.52
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.5
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	97.5
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	97.48
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	97.39
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	97.36
PLN02964	644	phosphatidylserine decarboxylase	97.36
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	97.36
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	97.33
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	97.31
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	97.29
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	97.26
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	97.24
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	97.23
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	97.18
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	97.17
PLN02270	808	phospholipase D alpha	97.15
KOG1030|consensus	168		97.14
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	97.14
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	97.02
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	97.02
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	97.01
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	97.01
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	96.99
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.99
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	96.96
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.96
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	96.93
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	96.91
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	96.9
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	96.9
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	96.87
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	96.87
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	96.87
KOG3837|consensus	523		96.86
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	96.83
cd00030	102	C2 C2 domain. The C2 domain was first identified i	96.82
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	96.79
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	96.79
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	96.78
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	96.77
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	96.76
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	96.7
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	96.69
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	96.68
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	96.67
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	96.65
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	96.62
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	96.62
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.62
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	96.61
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	96.61
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	96.6
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	96.58
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	96.58
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.58
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	96.56
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	96.55
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	96.52
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	96.5
KOG0696|consensus	683		96.48
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	96.46
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	96.44
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	96.44
PF15627	156	CEP76-C2: CEP76 C2 domain	96.42
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	96.36
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	96.34
KOG1265|consensus	1189		96.33
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	96.32
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	96.28
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	96.26
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	96.19
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.15
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	96.14
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.13
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	96.12
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	96.07
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	96.04
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.99
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	95.95
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.94
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	95.93
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	95.93
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	95.92
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	95.91
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	95.88
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	95.87
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	95.87
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	95.84
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	95.77
KOG2060|consensus	405		95.6
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	95.58
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	95.57
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	95.56
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	95.56
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	95.39
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.3
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	95.18
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	94.68
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	94.52
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	93.65
KOG1327|consensus	529		93.47
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	93.45
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	93.27
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	92.93
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.7
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	92.69
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	92.39
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	92.27
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	91.52
PLN02964	644	phosphatidylserine decarboxylase	91.11
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.4
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	89.98
PLN02352	758	phospholipase D epsilon	89.43
KOG1264|consensus	1267		85.77
PF14924	112	DUF4497: Protein of unknown function (DUF4497)	85.63
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	85.0
KOG4027|consensus	187		83.81
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	82.0
KOG1329|consensus	887		81.36
KOG0906|consensus	843		80.49
KOG1265|consensus	1189		80.03

>KOG1028|consensus

Probab=100.00  E-value=5.1e-35  Score=243.81  Aligned_cols=162  Identities=42%  Similarity=0.734  Sum_probs=153.6

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC------------------
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP------------------   68 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~------------------   68 (194)
                      ..|-+.+..|++|+++|..|.+||||++++.|+  +..+.+|++.++|+||+|||+|.|.+.                  
T Consensus       167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPd--k~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPD--KKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCC--CCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            467899999999999998889999999999998  577899999999999999999999977                  


Q ss_pred             --------------------------------------------------------------------------CCceeE
Q psy6105          69 --------------------------------------------------------------------------ANPYVK   74 (194)
Q Consensus        69 --------------------------------------------------------------------------~dpyv~   74 (194)
                                                                                                +|+||+
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk  324 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVK  324 (421)
T ss_pred             cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEE
Confidence                                                                                      899999


Q ss_pred             EEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHH
Q psy6105          75 VYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEM  154 (194)
Q Consensus        75 v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~  154 (194)
                      +++........+++|.+++++.||+|||+|.|.++.+.+.+..|.|+|||++.++.+++||++.++....+.|..||.+|
T Consensus       325 ~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m  404 (421)
T KOG1028|consen  325 VTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEM  404 (421)
T ss_pred             EEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCCCchHHHHHHHH
Confidence            99998888899999999999999999999999999999998999999999999999999999999999988899999999


Q ss_pred             hhCCCCceEeEEEccC
Q psy6105         155 LDNPRQPVTQWYPLME  170 (194)
Q Consensus       155 l~~p~~~~~~W~~L~~  170 (194)
                      +.+|+.++++||.|.+
T Consensus       405 ~~~p~~pv~~wh~l~~  420 (421)
T KOG1028|consen  405 LNSPRKPVAQWHSLRS  420 (421)
T ss_pred             HhCccCceeeeEeccc
Confidence            9999999999999975

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.97  E-value=1.1e-30  Score=187.07  Aligned_cols=123  Identities=28%  Similarity=0.481  Sum_probs=107.2

Q ss_pred             ceeEEEeeccCCCCCCCCCC--CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIP--SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKR   83 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~--g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~   83 (194)
                      +..|.+.++.|+||.++|.+  +.+||||+|++.++.+                                         +
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~-----------------------------------------k   52 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNA-----------------------------------------K   52 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCc-----------------------------------------c
Confidence            45689999999999999843  5589999999987621                                         1


Q ss_pred             eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                      ..+++|+++++++||+|||+|.|.++.+++.+..|.|+|||++.++++++||++.+++.+.+.+.+||.+|+.+|+++++
T Consensus        53 ~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va  132 (138)
T cd08407          53 LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIA  132 (138)
T ss_pred             cceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchh
Confidence            23667778888888888888889888888888899999999999999999999999999999999999999999999999


Q ss_pred             eEEEcc
Q psy6105         164 QWYPLM  169 (194)
Q Consensus       164 ~W~~L~  169 (194)
                      +||.|.
T Consensus       133 ~WH~L~  138 (138)
T cd08407         133 MWHQLH  138 (138)
T ss_pred             EEEECC
Confidence            999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.97  E-value=4.5e-30  Score=183.83  Aligned_cols=123  Identities=37%  Similarity=0.627  Sum_probs=107.3

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...|.+.++.|+||+++|..|.+||||+|+|.++++.                                         ..
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~-----------------------------------------~~   52 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRK-----------------------------------------IS   52 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcc-----------------------------------------cc
Confidence            4579999999999999999999999999999876211                                         12


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|+++++++||+|||+|.|.++.+++.+..|.|+|||++.++++++||++.|+..+.+.+.+||.+|+.+|++++++|
T Consensus        53 k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~W  132 (136)
T cd08406          53 KKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMW  132 (136)
T ss_pred             ccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEe
Confidence            45677777778888888888888777777889999999999999999999999999999999999999999999999999


Q ss_pred             EEcc
Q psy6105         166 YPLM  169 (194)
Q Consensus       166 ~~L~  169 (194)
                      |.|.
T Consensus       133 H~l~  136 (136)
T cd08406         133 HPLR  136 (136)
T ss_pred             eecC
Confidence            9984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.96  E-value=9.6e-29  Score=175.06  Aligned_cols=120  Identities=22%  Similarity=0.363  Sum_probs=95.2

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..|-+.++.|++|++++..+..||||+|+|...                                         +++..+
T Consensus        14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-----------------------------------------~k~~~K   52 (135)
T cd08692          14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-----------------------------------------GGLLYK   52 (135)
T ss_pred             CeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-----------------------------------------CCccee
Confidence            457788888888887765666677777777755                                         233346


Q ss_pred             eeceeecCCC-CCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC-CcchhhHHHHhhCCCCceEe
Q psy6105          87 KRTSVKKNSL-NPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI-GIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        87 ~kT~~~~~t~-nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~W~~~l~~p~~~~~~  164 (194)
                      +||++++++. +|+|||+|.|+++.+.. +..|.|+|||++..+++++||++.++.++. +.+.+||.+|+.+|++++++
T Consensus        53 kKT~v~k~t~~~P~fNEsF~Fdv~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~  131 (135)
T cd08692          53 KKTRLVKSSNGQVKWGETMIFPVTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTK  131 (135)
T ss_pred             ecCccEECCCCCceecceEEEeCCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeE
Confidence            6777777764 57788888888776543 578999999999999999999999999874 45799999999999999999


Q ss_pred             EEEc
Q psy6105         165 WYPL  168 (194)
Q Consensus       165 W~~L  168 (194)
                      ||.|
T Consensus       132 WH~L  135 (135)
T cd08692         132 WHSL  135 (135)
T ss_pred             eecC
Confidence            9987

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.96  E-value=3.2e-28  Score=174.89  Aligned_cols=124  Identities=23%  Similarity=0.475  Sum_probs=107.4

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...|.+.++.|+||++++..|.+||||++++.|..+                                        ....
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~----------------------------------------~~~~   53 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG----------------------------------------QEIS   53 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC----------------------------------------ccee
Confidence            457899999999999999999999999999997511                                        1112


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc-chhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI-GRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|++++++.||+|||+|.|.++.+++.+..|.++|||++.++++++||++.+++...+. +.+||.+|+.+|++++++
T Consensus        54 ~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~  133 (138)
T cd08408          54 KSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCR  133 (138)
T ss_pred             eccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeE
Confidence            5677778888888888888888887778788999999999999999999999999998875 679999999999999999


Q ss_pred             EEEcc
Q psy6105         165 WYPLM  169 (194)
Q Consensus       165 W~~L~  169 (194)
                      ||+|+
T Consensus       134 WH~l~  138 (138)
T cd08408         134 WHTLL  138 (138)
T ss_pred             eeecC
Confidence            99985

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.95  E-value=9.8e-27  Score=167.15  Aligned_cols=121  Identities=23%  Similarity=0.432  Sum_probs=102.8

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..|.+.++.|+||++.| .+.+||||+|.+.+..+.                                         ..
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~-----------------------------------------~~   51 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKV-----------------------------------------VK   51 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEE-----------------------------------------ee
Confidence            467899999999999999 888999999999876211                                         12


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCC--CCCcchhhHHHHhhCCCCceE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSS--FIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~--~~~~~~~~W~~~l~~p~~~~~  163 (194)
                      +++|++++++.||+|||+|.|.++.+++.+..|.|+|||++..+++++||++.|+..  ..+.+.+||.+|+..|+++++
T Consensus        52 ~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~  131 (137)
T cd08409          52 TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIK  131 (137)
T ss_pred             eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCcee
Confidence            556777777888888888888887777777899999999998999999999999975  446779999999999999999


Q ss_pred             eEEEc
Q psy6105         164 QWYPL  168 (194)
Q Consensus       164 ~W~~L  168 (194)
                      +||.|
T Consensus       132 ~WH~l  136 (137)
T cd08409         132 RWHAL  136 (137)
T ss_pred             EEEeC
Confidence            99998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.95  E-value=8.8e-27  Score=167.28  Aligned_cols=122  Identities=38%  Similarity=0.762  Sum_probs=101.7

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.++.|++|+.+|..|.+||||+|++.+.+....                                         +
T Consensus        15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~-----------------------------------------~   53 (136)
T cd08402          15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK-----------------------------------------K   53 (136)
T ss_pred             CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccc-----------------------------------------e
Confidence            46899999999999999999999999999976421111                                         4


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      ++|++++++.||+|||+|.|.++.+++....|.|+|||++.++++++||++.|++...+.+.+||.+|+..|++++++||
T Consensus        54 ~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh  133 (136)
T cd08402          54 KKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWH  133 (136)
T ss_pred             eeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEE
Confidence            45666666677777777777766555555689999999999999999999999999998899999999999999999999


Q ss_pred             Ecc
Q psy6105         167 PLM  169 (194)
Q Consensus       167 ~L~  169 (194)
                      .|+
T Consensus       134 ~~~  136 (136)
T cd08402         134 TLQ  136 (136)
T ss_pred             EcC
Confidence            985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.94  E-value=6.1e-26  Score=162.90  Aligned_cols=122  Identities=35%  Similarity=0.653  Sum_probs=104.0

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+.+.+++|++|+.+|..|.+||||+|++.+.....                                         .
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~-----------------------------------------~   52 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRI-----------------------------------------S   52 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCcee-----------------------------------------e
Confidence            56799999999999999999999999999997651111                                         2


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||+|+|+|.|.++...+....|.|+|||++.++++++||++.+++...+.+..||.+|+..|++++.+|
T Consensus        53 ~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~W  132 (136)
T cd08404          53 KKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEW  132 (136)
T ss_pred             eEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEE
Confidence            45677777777888888888877665555568999999999999999999999999998788999999999999999999


Q ss_pred             EEc
Q psy6105         166 YPL  168 (194)
Q Consensus       166 ~~L  168 (194)
                      |.|
T Consensus       133 h~l  135 (136)
T cd08404         133 HML  135 (136)
T ss_pred             Eec
Confidence            998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.94  E-value=4.6e-26  Score=163.33  Aligned_cols=121  Identities=31%  Similarity=0.558  Sum_probs=102.9

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..++++++.|++|+.+|..|.+||||+|++.+....                                         ..+
T Consensus        14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~-----------------------------------------~~~   52 (135)
T cd08410          14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKL-----------------------------------------IKT   52 (135)
T ss_pred             CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcc-----------------------------------------cce
Confidence            468999999999999999999999999998764110                                         124


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc-chhhHHHHhhCCCCceEeE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI-GRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~W~~~l~~p~~~~~~W  165 (194)
                      ++|++++++.||+|||+|.|.++.+++.+..|.|+|||++..+++++||++.|+....+. +.+||.+|+..|++++++|
T Consensus        53 ~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~w  132 (135)
T cd08410          53 KKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQW  132 (135)
T ss_pred             EcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEe
Confidence            677777788888888888888876666666899999999999999999999999877665 6799999999999999999


Q ss_pred             EEc
Q psy6105         166 YPL  168 (194)
Q Consensus       166 ~~L  168 (194)
                      |.|
T Consensus       133 h~l  135 (135)
T cd08410         133 HSL  135 (135)
T ss_pred             ecC
Confidence            987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.94  E-value=3.4e-26  Score=164.18  Aligned_cols=123  Identities=37%  Similarity=0.704  Sum_probs=103.1

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..|.+.++.|++|+.+|..|.+||||+|.+.+.+...                                         .
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~-----------------------------------------~   52 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRV-----------------------------------------E   52 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcc-----------------------------------------c
Confidence            45799999999999999999999999999997641111                                         1


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||+|||+|.|.++.+.+.+..|.|+|||++.++++++||++.+++...+.+.+||.+|+..|++++++|
T Consensus        53 ~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~w  132 (136)
T cd08405          53 KKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQW  132 (136)
T ss_pred             cccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEE
Confidence            45666667777777777777776655555568999999999999999999999999999889999999999999999999


Q ss_pred             EEcc
Q psy6105         166 YPLM  169 (194)
Q Consensus       166 ~~L~  169 (194)
                      |.|+
T Consensus       133 h~l~  136 (136)
T cd08405         133 HRLK  136 (136)
T ss_pred             EecC
Confidence            9984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.94  E-value=5.1e-26  Score=162.91  Aligned_cols=123  Identities=52%  Similarity=0.919  Sum_probs=102.6

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      .+..++++++.|++|+++|..|.+||||+|++.+.+...                                         
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~-----------------------------------------   50 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRL-----------------------------------------   50 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCccc-----------------------------------------
Confidence            356799999999999999999999999999997642111                                         


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      .+++|++++++.||.|||+|.|.+..+.+....|.|+|||++.++++++||++.|++...+.+.+||.+|+..|++++++
T Consensus        51 ~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~  130 (134)
T cd08403          51 KKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQ  130 (134)
T ss_pred             ceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeE
Confidence            24566666667777777777777665555556799999999999999999999999998888999999999999999999


Q ss_pred             EEEc
Q psy6105         165 WYPL  168 (194)
Q Consensus       165 W~~L  168 (194)
                      ||.|
T Consensus       131 wh~~  134 (134)
T cd08403         131 WHQL  134 (134)
T ss_pred             eecC
Confidence            9987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.94  E-value=5.9e-26  Score=162.35  Aligned_cols=122  Identities=30%  Similarity=0.501  Sum_probs=102.1

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...|.++++.|++|+++|..|.+||||+|.+.++.....                                         
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~-----------------------------------------   50 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKS-----------------------------------------   50 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccC-----------------------------------------
Confidence            457899999999999999999999999999987622111                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||+|||+|.|.+...++....|.++|||++..+++++||++.+++...+...+||.+|+.+|++++++|
T Consensus        51 ~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~w  130 (133)
T cd08384          51 KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAW  130 (133)
T ss_pred             CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChhee
Confidence            45666666677777777777776655555568999999999988999999999999988888899999999999999999


Q ss_pred             EEc
Q psy6105         166 YPL  168 (194)
Q Consensus       166 ~~L  168 (194)
                      |.|
T Consensus       131 h~l  133 (133)
T cd08384         131 HTL  133 (133)
T ss_pred             ecC
Confidence            987

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.91  E-value=1.7e-23  Score=149.59  Aligned_cols=122  Identities=40%  Similarity=0.715  Sum_probs=100.4

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+.+.++.|++|+.++..+.+||||++++.+......                                         
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-----------------------------------------   51 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLK-----------------------------------------   51 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEee-----------------------------------------
Confidence            467999999999999999999999999999987622222                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||.|||+|.|.+....+....|.|+|||++.++++++||++.++++..+.+.+||.+|+..|++++++|
T Consensus        52 ~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~w  131 (134)
T cd00276          52 KKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARW  131 (134)
T ss_pred             eecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEe
Confidence            44555566666677777777766555444568999999999888999999999999997778999999999999999999


Q ss_pred             EEc
Q psy6105         166 YPL  168 (194)
Q Consensus       166 ~~L  168 (194)
                      |.|
T Consensus       132 h~~  134 (134)
T cd00276         132 HKL  134 (134)
T ss_pred             eeC
Confidence            987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.91  E-value=5.9e-24  Score=147.28  Aligned_cols=103  Identities=17%  Similarity=0.294  Sum_probs=84.3

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...|.+.++.|++|+ .  .|.+||||+|+|++..+ .                                         .
T Consensus        13 ~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k-~-----------------------------------------~   47 (118)
T cd08677          13 KAELHVNILEAENIS-V--DAGCECYISGCVSVSEG-Q-----------------------------------------K   47 (118)
T ss_pred             CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcC-c-----------------------------------------c
Confidence            456889999999998 3  46699999999986411 1                                         1


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC--CcchhhHHH
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI--GIGRDHWLE  153 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~--~~~~~~W~~  153 (194)
                      +++|+++++++||+|||+|.|.++.+++.+..|.|+|||+|.++++++||++.+++...  +.|.+||.+
T Consensus        48 k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~  117 (118)
T cd08677          48 EAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD  117 (118)
T ss_pred             EEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence            45677777777888888888888888888889999999999999999999999999964  678889975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.90  E-value=5.7e-23  Score=151.41  Aligned_cols=125  Identities=25%  Similarity=0.398  Sum_probs=100.1

Q ss_pred             CCCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCe
Q psy6105           3 SKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGK   82 (194)
Q Consensus         3 ~~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~   82 (194)
                      ++....+++.+++|++|+++|..|.+||||+|++.+......                                      
T Consensus        23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~--------------------------------------   64 (162)
T cd04020          23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKS--------------------------------------   64 (162)
T ss_pred             CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCc--------------------------------------
Confidence            345667999999999999999999999999999987522222                                      


Q ss_pred             EeEEeeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC-------------Ccch
Q psy6105          83 RIRKKRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI-------------GIGR  148 (194)
Q Consensus        83 ~~~~~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~-------------~~~~  148 (194)
                         +++|++++++.||+|||+|.|.+ ..+++.+..|.|+|||++.++++++||++.+++..+             +.+.
T Consensus        65 ---~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~  141 (162)
T cd04020          65 ---KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEI  141 (162)
T ss_pred             ---ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHH
Confidence               45666666666777777776663 233445568999999999999999999999999874             4567


Q ss_pred             hhHHHHhhCCCCceEeEEEc
Q psy6105         149 DHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L  168 (194)
                      .||.+|+++|++.+.+-.+|
T Consensus       142 ~~w~~~~~~p~~~~~~~~~~  161 (162)
T cd04020         142 LLWQKMLDNPNSWVEGTLPL  161 (162)
T ss_pred             HHHHHHHhCCCCeEEEEEec
Confidence            89999999999999988877

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.90  E-value=9.7e-23  Score=144.39  Aligned_cols=125  Identities=20%  Similarity=0.295  Sum_probs=92.1

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      .|++++.|++|+++|..|.+||||+|.++..     +.+|+++++|+||+|||.|.|.+...                  
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~-----~~kT~v~~~t~nP~Wne~f~F~v~~~------------------   57 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKE-----KYSTSVKEKTTSPVWKEECSFELPGL------------------   57 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCe-----eeeeeeecCCCCCEeCceEEEEecCc------------------
Confidence            4789999999999999999999999999654     56777777777777777776654300                  


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                                          ..++.....|.++|||++.++++++||++.|+++.          +...++....+||+|
T Consensus        58 --------------------~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~----------l~~~~~~~~~~W~~L  107 (126)
T cd08682          58 --------------------LSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLND----------LDEDKGRRRTRWFKL  107 (126)
T ss_pred             --------------------ccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHH----------hhccCCCcccEEEEC
Confidence                                00112335899999999999899999999999974          333456678899999


Q ss_pred             cCCCCCCccccCCCCcceee
Q psy6105         169 METVPGQIPLSHSSNLPSSL  188 (194)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~  188 (194)
                      .+...  .+....|++.++|
T Consensus       108 ~~~~~--~~~~~~Gei~l~~  125 (126)
T cd08682         108 ESKPG--KDDKERGEIEVDI  125 (126)
T ss_pred             cCCCC--CCccccceEEEEe
Confidence            87543  3344556666544

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.89  E-value=2e-22  Score=145.43  Aligned_cols=114  Identities=28%  Similarity=0.444  Sum_probs=89.2

Q ss_pred             eeEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           7 RSFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ..|.+.++.|+||+++| ..|.+||||+++|.++.+..                                         .
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~-----------------------------------------~   67 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI-----------------------------------------A   67 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc-----------------------------------------c
Confidence            46889999999999874 67899999999999872211                                         2


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEE-ecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVI-DYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~-d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|+++++++||+|||+|.|.+.   +.+..|.|+|| |++.++++++||++.|+|+.+.            .+.....
T Consensus        68 k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~  132 (146)
T cd04028          68 KKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD------------LSNLVIG  132 (146)
T ss_pred             ceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc------------CCCCcee
Confidence            556666677777777777777775   34568999999 5888889999999999999763            2556789


Q ss_pred             EEEccCCCCCCc
Q psy6105         165 WYPLMETVPGQI  176 (194)
Q Consensus       165 W~~L~~~~~~~~  176 (194)
                      ||+|.+..+...
T Consensus       133 Wy~L~~~~~~~~  144 (146)
T cd04028         133 WYKLFPTSSLVD  144 (146)
T ss_pred             EEecCCcccccC
Confidence            999998776543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.89  E-value=8.2e-23  Score=143.94  Aligned_cols=108  Identities=27%  Similarity=0.472  Sum_probs=87.3

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.++.|++|+++| .|.+||||+|++.++....                                         .+
T Consensus        13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~-----------------------------------------~~   50 (122)
T cd08381          13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKT-----------------------------------------TK   50 (122)
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccC-----------------------------------------Cc
Confidence            46899999999999999 9999999999999862111                                         25


Q ss_pred             eeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      ++|++++++.||+|||+|.|.+ +.+++....|.|+|||++.++++++||++.|+|..+..            +.....|
T Consensus        51 ~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W  118 (122)
T cd08381          51 RKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDL------------SQETEKW  118 (122)
T ss_pred             eeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEecccccc------------CCCccce
Confidence            6677777777777777777775 44556667999999999999999999999999997642            4556899


Q ss_pred             EEc
Q psy6105         166 YPL  168 (194)
Q Consensus       166 ~~L  168 (194)
                      |+|
T Consensus       119 ~~L  121 (122)
T cd08381         119 YPL  121 (122)
T ss_pred             EEC
Confidence            987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.89  E-value=1.3e-22  Score=143.63  Aligned_cols=111  Identities=27%  Similarity=0.446  Sum_probs=89.7

Q ss_pred             ceeEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...|.+.++.|+||+++|.. |.+||||++++.|+....                                         
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~-----------------------------------------   52 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNR-----------------------------------------   52 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCcc-----------------------------------------
Confidence            45799999999999999986 899999999999862111                                         


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      .+++|++++++.||+|||+|.|.+..+++....|.++|||++.++++++||++.|+|....            ++.....
T Consensus        53 ~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~------------~~~~~~~  120 (125)
T cd08393          53 GKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD------------WSNTQPT  120 (125)
T ss_pred             ccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc------------cCCCCcc
Confidence            1456777777777777777777776666666799999999999999999999999999763            2456788


Q ss_pred             EEEcc
Q psy6105         165 WYPLM  169 (194)
Q Consensus       165 W~~L~  169 (194)
                      ||+|+
T Consensus       121 W~~L~  125 (125)
T cd08393         121 WYPLQ  125 (125)
T ss_pred             eEECc
Confidence            99985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.88  E-value=2.9e-22  Score=142.14  Aligned_cols=113  Identities=23%  Similarity=0.355  Sum_probs=91.1

Q ss_pred             ceeEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...|.+.++.|+||+++|.. |.+||||++++.|+.+..                                         
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~-----------------------------------------   52 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHN-----------------------------------------   52 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccc-----------------------------------------
Confidence            46789999999999999975 999999999999872111                                         


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      .+++|++++++.||+|||+|.|.++.+++.+..|.++|||++.++++++||++.|+|....         +........+
T Consensus        53 ~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~---------~~~~~~~~~~  123 (128)
T cd08392          53 SKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD---------FEDTDSQRFL  123 (128)
T ss_pred             ceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc---------cCCCCccccc
Confidence            2557777777778888888888877767777899999999999999999999999998763         1122456789


Q ss_pred             EEEc
Q psy6105         165 WYPL  168 (194)
Q Consensus       165 W~~L  168 (194)
                      ||+|
T Consensus       124 W~~l  127 (128)
T cd08392         124 WYPL  127 (128)
T ss_pred             eEEC
Confidence            9998

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.88  E-value=4.2e-22  Score=140.92  Aligned_cols=111  Identities=27%  Similarity=0.442  Sum_probs=88.5

Q ss_pred             ceeEEEeeccCCCCCCCCC-CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRSI-PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~-~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...|.+.++.|++|+++|. .|.+||||+|++.|+.....                                        
T Consensus        14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~----------------------------------------   53 (125)
T cd04029          14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQS----------------------------------------   53 (125)
T ss_pred             CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcccc----------------------------------------
Confidence            5578999999999999876 48999999999988622121                                        


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                       +++|++++++.||+|||+|.|.++.+++.+..|.|+|||++.++++++||++.|++....            +....+.
T Consensus        54 -~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~  120 (125)
T cd04029          54 -KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN------------FDSQHEE  120 (125)
T ss_pred             -ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc------------ccCCccc
Confidence             446666666677777777777776656666789999999999999999999999999773            3677899


Q ss_pred             EEEcc
Q psy6105         165 WYPLM  169 (194)
Q Consensus       165 W~~L~  169 (194)
                      ||+|+
T Consensus       121 w~~l~  125 (125)
T cd04029         121 CLPLH  125 (125)
T ss_pred             EEECc
Confidence            99985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.88  E-value=2.8e-22  Score=141.27  Aligned_cols=113  Identities=20%  Similarity=0.267  Sum_probs=92.9

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ....|.+.++.|+||++++..|.+||||+++|.|+.++                                        ..
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~----------------------------------------~~   51 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSS----------------------------------------TS   51 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCC----------------------------------------CC
Confidence            34579999999999999999999999999999987211                                        00


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      .+++|++++++.||+|||+|.|.++.+++.+..|.++||+++.++++++||++.|+|+.+..           .+....+
T Consensus        52 ~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~-----------~~~~~~~  120 (124)
T cd08680          52 CLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFES-----------SEEMSTK  120 (124)
T ss_pred             ceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccC-----------CCccccc
Confidence            15577777788888888888999888888889999999999999999999999999986631           1335678


Q ss_pred             EEEc
Q psy6105         165 WYPL  168 (194)
Q Consensus       165 W~~L  168 (194)
                      ||+|
T Consensus       121 Wy~l  124 (124)
T cd08680         121 WYNL  124 (124)
T ss_pred             cccC
Confidence            9876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.87  E-value=2.4e-21  Score=135.61  Aligned_cols=111  Identities=24%  Similarity=0.339  Sum_probs=83.6

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcC--CeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCE--GKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~--~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      .|++.++.|++|+.+| .|.+||||+|++...  +.+.                                         +
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~-----------------------------------------~   38 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKK-----------------------------------------R   38 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccc-----------------------------------------c
Confidence            3789999999999998 499999999998631  0111                                         2


Q ss_pred             EeeceeecCCCCCcccceEEEEecCC-CCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPAS-NVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~-~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|+++.+++||+|||+|.|.+..+ .+....|.+.|||++..+++++||++.+++..+.            ++.....
T Consensus        39 k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~------------~~~~~~~  106 (120)
T cd08395          39 KFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIA------------QAGSCAC  106 (120)
T ss_pred             EeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCc------------CCCcEEE
Confidence            44566666666666666666766543 3445689999999998888999999999998763            3667889


Q ss_pred             EEEccCCC
Q psy6105         165 WYPLMETV  172 (194)
Q Consensus       165 W~~L~~~~  172 (194)
                      |++|....
T Consensus       107 w~~L~~~~  114 (120)
T cd08395         107 WLPLGRRI  114 (120)
T ss_pred             EEECcCcc
Confidence            99997653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.86  E-value=4.3e-21  Score=139.10  Aligned_cols=127  Identities=24%  Similarity=0.365  Sum_probs=94.8

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++.++.|++|++  .+|.+||||+|++.+...+..+++|+++++|+||+|||+|.|.+..+         .       
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~---------~-------   62 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTID---------S-------   62 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecc---------c-------
Confidence            37899999999988  67999999999999854344577889999999999999998875411         0       


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      .+            +.+.+.++.+++....|.|.|||++.++++++||++.|++..+..+           ......||+
T Consensus        63 ~~------------~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~  119 (148)
T cd04010          63 SP------------EKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYF  119 (148)
T ss_pred             cc------------ccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceee
Confidence            00            1112334444555568999999999888999999999999876421           135689999


Q ss_pred             ccCCCCCC
Q psy6105         168 LMETVPGQ  175 (194)
Q Consensus       168 L~~~~~~~  175 (194)
                      |.+...-.
T Consensus       120 L~~~~~~~  127 (148)
T cd04010         120 LQPREEKS  127 (148)
T ss_pred             cCCccccc
Confidence            98875333

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG0696|consensus

Probab=99.85  E-value=2.3e-22  Score=163.18  Aligned_cols=114  Identities=29%  Similarity=0.494  Sum_probs=95.6

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+-+++.-|+||.+||-+|.+||||++.|.|+.+.                                         ..++
T Consensus       181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~-----------------------------------------~sKq  219 (683)
T KOG0696|consen  181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKN-----------------------------------------ESKQ  219 (683)
T ss_pred             eEEEEehhhccccccCCCCCCCcceeEEeccCCcc-----------------------------------------hhhh
Confidence            46788999999999999999999999999987221                                         1367


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      +|++++.++||+|||+|+|++.+.+.+ +.|.|+|||||..++++|+|...++++++          +   ..++.+||+
T Consensus       220 KTkTik~~LNP~wNEtftf~Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl----------~---K~p~~GWyK  285 (683)
T KOG0696|consen  220 KTKTIKATLNPVWNETFTFKLKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISEL----------Q---KAPVDGWYK  285 (683)
T ss_pred             hhhhhhhhcCccccceeEEeccccccc-ceeEEEEecccccccccccceecccHHHH----------h---hcchhhHHH
Confidence            777788888888888888888777754 58999999999999999999999999854          3   556889999


Q ss_pred             ccCCCCCCc
Q psy6105         168 LMETVPGQI  176 (194)
Q Consensus       168 L~~~~~~~~  176 (194)
                      |+++++|+.
T Consensus       286 lLsqeEGEy  294 (683)
T KOG0696|consen  286 LLSQEEGEY  294 (683)
T ss_pred             HhhhhcCce
Confidence            999998875

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.85  E-value=4.8e-21  Score=134.30  Aligned_cols=108  Identities=22%  Similarity=0.414  Sum_probs=84.4

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...|.+.+++|+||+++| .|.+||||+++|+|+....                                         .
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~-----------------------------------------~   48 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVR-----------------------------------------F   48 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCc-----------------------------------------c
Confidence            457999999999999999 8899999999999862111                                         1


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC-CCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG-SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~-~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|++++++.||+|||+|.|.+..+++.. .|.++|||++... .+++||++.|++.++.            .+..+.+
T Consensus        49 ~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~  115 (119)
T cd08685          49 RQKTSTVPDSANPLFHETFSFDVNERDYQK-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIV------------NQKEISG  115 (119)
T ss_pred             eEeCccccCCCCCccccEEEEEcChHHhCC-EEEEEEECCCCCcCCCEEEEEEEecHHHhc------------cCccccc
Confidence            556777777777777777777776555443 6889999988775 4789999999998552            2566789


Q ss_pred             EEEc
Q psy6105         165 WYPL  168 (194)
Q Consensus       165 W~~L  168 (194)
                      ||.|
T Consensus       116 Wy~l  119 (119)
T cd08685         116 WYYL  119 (119)
T ss_pred             eEeC
Confidence            9987

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.84  E-value=2.2e-20  Score=131.93  Aligned_cols=110  Identities=22%  Similarity=0.453  Sum_probs=85.6

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.++.|++|+++|..|.+||||+|++.+..  ..                                         
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~-----------------------------------------   51 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR--SN-----------------------------------------   51 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC--CC-----------------------------------------
Confidence            34689999999999999999999999999998651  11                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      .++|++++++.||+|||+|.|.++..++....|.|+|||++.++++++||++.++++++..            +.....|
T Consensus        52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~------------~~~~~~W  119 (124)
T cd08387          52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDL------------SEKLDLW  119 (124)
T ss_pred             cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccC------------CCCcceE
Confidence            2345555556666666666666655555556899999999999999999999999997642            4467899


Q ss_pred             EEccC
Q psy6105         166 YPLME  170 (194)
Q Consensus       166 ~~L~~  170 (194)
                      |+|++
T Consensus       120 ~~l~~  124 (124)
T cd08387         120 RKIQS  124 (124)
T ss_pred             EECcC
Confidence            99974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=1.5e-20  Score=133.25  Aligned_cols=121  Identities=23%  Similarity=0.320  Sum_probs=85.7

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|++++++|++|+++|..|.+||||++++++.     +.+|+++++++||.|||.|.|                      
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~-----~~rT~v~~~t~nP~Wne~f~f----------------------   53 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ-----KKRTRTKPKDLNPVWNEKLVF----------------------   53 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCE-----EecceeEcCCCCCccceEEEE----------------------
Confidence            37899999999999999999999999998753     445655555555555555554                      


Q ss_pred             eceeecCCCCCcccceEEEEecCC-CCCCceEEEEEEecCCCC-CCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPAS-NVNDVSLIIKVIDYDRIG-SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~-~l~~~~l~i~V~d~~~~~-~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                                         .+... .+....|.|+|||++.++ ++++||++.++++.+.           .++....+|
T Consensus        54 -------------------~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~-----------~~~~~~~~w  103 (127)
T cd04022          54 -------------------NVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFV-----------PPSEAVVQR  103 (127)
T ss_pred             -------------------EccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcC-----------CCCCccceE
Confidence                               33221 122347999999998886 8999999999998653           235667899


Q ss_pred             EEccCCCCCCccccCCCCcce
Q psy6105         166 YPLMETVPGQIPLSHSSNLPS  186 (194)
Q Consensus       166 ~~L~~~~~~~~~~~~~~~~~~  186 (194)
                      |+|.......+ .+|...|.+
T Consensus       104 ~~L~~~~~~~~-~~G~l~l~~  123 (127)
T cd04022         104 YPLEKRGLFSR-VRGEIGLKV  123 (127)
T ss_pred             eEeeeCCCCCC-ccEEEEEEE
Confidence            99987543332 344444433

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.84  E-value=2.4e-20  Score=131.78  Aligned_cols=110  Identities=19%  Similarity=0.335  Sum_probs=90.1

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      .+..|.+.++.|+||+++|.+|.+||||++.+.|..  ..                                        
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~--~~----------------------------------------   51 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK--KQ----------------------------------------   51 (124)
T ss_pred             CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC--cc----------------------------------------
Confidence            456899999999999999999999999999998761  11                                        


Q ss_pred             EEeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                       +++|+++++ .||+|||+|.|. +..+++.+..|.++|||++.++++++||++.|+|+...            ++....
T Consensus        52 -~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~------------~~~~~~  117 (124)
T cd08389          52 -RAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLN------------LEGETT  117 (124)
T ss_pred             -eeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccC------------CCCCce
Confidence             445666555 677777777776 66666777799999999999999999999999999764            366789


Q ss_pred             eEEEccC
Q psy6105         164 QWYPLME  170 (194)
Q Consensus       164 ~W~~L~~  170 (194)
                      .||+|+|
T Consensus       118 ~w~~L~p  124 (124)
T cd08389         118 VWLTLEP  124 (124)
T ss_pred             EEEeCCC
Confidence            9999975

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.84  E-value=1.7e-20  Score=129.77  Aligned_cols=106  Identities=23%  Similarity=0.419  Sum_probs=80.0

Q ss_pred             EEEeeccCCCCCCCCC-CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           9 FRADNYCRPTIGNRSI-PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~-~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      +.+++++|++|+.+|. .|.+||||++++++.                                              ++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~----------------------------------------------~~   34 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST----------------------------------------------TY   34 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCe----------------------------------------------eE
Confidence            4789999999999984 788999999988532                                              34


Q ss_pred             eceeecCCCCCcc-cceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhh-CCCCceEeE
Q psy6105          88 RTSVKKNSLNPFY-NEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLD-NPRQPVTQW  165 (194)
Q Consensus        88 kT~~~~~t~nP~~-~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~-~p~~~~~~W  165 (194)
                      +|+++++++||+| ||+|.|.++...+.+..|.|+|||++.++++++||++.+++..+          +. ..+..+.+|
T Consensus        35 kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l----------~~~~~~~~~~~w  104 (110)
T cd08688          35 KTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL----------LLKDSVSQISGW  104 (110)
T ss_pred             ecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHh----------cccCCccccCCe
Confidence            4555555566666 66666666555444468999999999999999999999999844          33 124458899


Q ss_pred             EEccC
Q psy6105         166 YPLME  170 (194)
Q Consensus       166 ~~L~~  170 (194)
                      |+|.+
T Consensus       105 ~~l~~  109 (110)
T cd08688         105 FPIYD  109 (110)
T ss_pred             EEccc
Confidence            99975

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.84  E-value=5.7e-20  Score=128.86  Aligned_cols=118  Identities=18%  Similarity=0.232  Sum_probs=84.2

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|+++++.|++++..+ .|.+||||+|.++..     +.+|+++.+                                  
T Consensus         3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~-----~~kT~v~~~----------------------------------   42 (121)
T cd04016           3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHA-----VYETPTAYN----------------------------------   42 (121)
T ss_pred             EEEEEEEEccCCCcCC-CCCCCceEEEEECCE-----EEEeEEccC----------------------------------
Confidence            5899999999988777 789999999999643     334444433                                  


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCC-CCcchhhHHHHhhCCCCceEeEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSF-IGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~-~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                            ++.||+|||+|.|.+....   ..|.|+|||+|.+++|++||++.+++.. +.            +++.+..||
T Consensus        43 ------~~~nP~WNe~F~f~v~~~~---~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~------------~g~~~~~W~  101 (121)
T cd04016          43 ------GAKNPRWNKTIQCTLPEGV---DSIYIEIFDERAFTMDERIAWTHITIPESVF------------NGETLDDWY  101 (121)
T ss_pred             ------CCCCCccCeEEEEEecCCC---cEEEEEEEeCCCCcCCceEEEEEEECchhcc------------CCCCccccE
Confidence                  1455556665666654321   3799999999999999999999999962 31            366789999


Q ss_pred             EccCCCCCCccccCCCCcceeeee
Q psy6105         167 PLMETVPGQIPLSHSSNLPSSLSC  190 (194)
Q Consensus       167 ~L~~~~~~~~~~~~~~~~~~~~~~  190 (194)
                      +|.+....    ...|.+.++|+|
T Consensus       102 ~L~~~~~~----~~~g~i~l~l~y  121 (121)
T cd04016         102 SLSGKQGE----DKEGMINLVFSY  121 (121)
T ss_pred             eCcCccCC----CCceEEEEEEeC
Confidence            99874422    244566655654

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.84  E-value=3.3e-20  Score=130.95  Aligned_cols=109  Identities=28%  Similarity=0.512  Sum_probs=84.8

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+++.+++|++|+++|..|.+||||+|++.+..  ..                                         
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~--~~-----------------------------------------   51 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KK-----------------------------------------   51 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC--CC-----------------------------------------
Confidence            45799999999999999999999999999998751  11                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||+|||+|.|.+...++....|.|+|||++.++++++||++.++++.+..            +...++|
T Consensus        52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~------------~~~~~~W  119 (124)
T cd08385          52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL------------GHVTEEW  119 (124)
T ss_pred             ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccC------------CCCcceE
Confidence            3355555556666666666666654444456899999999999999999999999997642            5567889


Q ss_pred             EEcc
Q psy6105         166 YPLM  169 (194)
Q Consensus       166 ~~L~  169 (194)
                      +.|.
T Consensus       120 ~~l~  123 (124)
T cd08385         120 RDLE  123 (124)
T ss_pred             EEcc
Confidence            9885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=4.3e-20  Score=134.38  Aligned_cols=127  Identities=21%  Similarity=0.209  Sum_probs=89.9

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      |++.++.|++|+++|..|.+||||+|.+++.     ..+|+++.++                                  
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~-----~~kTk~~~~~----------------------------------   42 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ-----VLRTRPSQTR----------------------------------   42 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCE-----EeeeEeccCC----------------------------------
Confidence            7899999999999999999999999999753     4455544331                                  


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                            +.||+|||.|.|.+....  ...|.|.|+|++..+++++||++.|++..+..+        ..++....+||+|
T Consensus        43 ------t~nP~WNE~F~f~v~~~~--~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~--------~~~~~~~~~W~~L  106 (150)
T cd04019          43 ------NGNPSWNEELMFVAAEPF--EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERR--------VDDRPVPSRWFSL  106 (150)
T ss_pred             ------CCCCcccCcEEEEecCcc--CCeEEEEEEEecCCCCCCeEEEEEEEHHHCccc--------CCCCccCCceEEC
Confidence                  345555555555543211  237889999999888899999999999876432        1235678999999


Q ss_pred             cCCCC---CCccccCCCCcceeeee
Q psy6105         169 METVP---GQIPLSHSSNLPSSLSC  190 (194)
Q Consensus       169 ~~~~~---~~~~~~~~~~~~~~~~~  190 (194)
                      .+...   +.++....|.+.+.|++
T Consensus       107 ~~~~~~~~~~k~~k~~g~l~l~i~~  131 (150)
T cd04019         107 ERPGGAMEQKKKRKFASRIHLRLCL  131 (150)
T ss_pred             cCCCCcccccccCcccccEEEEEEe
Confidence            98643   22344556666666654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG2059|consensus

Probab=99.83  E-value=1.5e-20  Score=159.50  Aligned_cols=167  Identities=22%  Similarity=0.403  Sum_probs=135.1

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-----------------
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-----------------   68 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-----------------   68 (194)
                      ..++++++.-|+||++.+..|.+||||.|.+..+    ...+|.++.+++.|.|.|.|+|.++                 
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E----~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~   79 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE----EVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKR   79 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeecch----hhhhhhhhhhhcCCccccceEEecCcceeeEEEEEecccccc
Confidence            4689999999999999999999999999999864    4799999999999999999999988                 


Q ss_pred             -----------------------------------------------------------------------CCceeEEEE
Q psy6105          69 -----------------------------------------------------------------------ANPYVKVYL   77 (194)
Q Consensus        69 -----------------------------------------------------------------------~dpyv~v~l   77 (194)
                                                                                             +|||++|..
T Consensus        80 D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~  159 (800)
T KOG2059|consen   80 DDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL  159 (800)
T ss_pred             ccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee
Confidence                                                                                   899999998


Q ss_pred             EcCCeEeEEeeceeecCCCCCcccceEEEEecCCC-------------CCCceEEEEEEe-cCCCCCCceeEEEEeCCCC
Q psy6105          78 VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASN-------------VNDVSLIIKVID-YDRIGSDELMGCTAIGSSF  143 (194)
Q Consensus        78 ~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~-------------l~~~~l~i~V~d-~~~~~~~~~iG~~~i~l~~  143 (194)
                      .+..+ ....+|.+++.+.+|.|+|.|.|.+..+.             -....|.+++|+ .+....++|+|++.+++..
T Consensus       160 ~g~~~-~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~  238 (800)
T KOG2059|consen  160 CGPSK-LKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDV  238 (800)
T ss_pred             cccch-hhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhh
Confidence            65433 33479999999999999999999875541             012468889998 5666679999999999975


Q ss_pred             CCcchhhHHHHhhCCCCceEeEEEccCCCCCCcccc--CCCCcceeee
Q psy6105         144 IGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS--HSSNLPSSLS  189 (194)
Q Consensus       144 ~~~~~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~--~~~~~~~~~~  189 (194)
                      ..            .....+.||.|+|.+.|++...  ..|.+.+.+.
T Consensus       239 ~~------------~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~  274 (800)
T KOG2059|consen  239 LR------------QKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVT  274 (800)
T ss_pred             hh------------hccCccceEEEecCCCcccCCCCCCccceeeeEE
Confidence            42            1456689999999998887544  3334444443

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.83  E-value=4.3e-20  Score=130.81  Aligned_cols=111  Identities=25%  Similarity=0.447  Sum_probs=86.2

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+.+|..+.+||||+|.+.+++....                                         
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~-----------------------------------------   53 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKST-----------------------------------------   53 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCc-----------------------------------------
Confidence            357899999999999999999999999999987522122                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC--CCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI--GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~--~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                      +++|++++++.||+|||+|.|.+....+....|.|.|||++.+  +++++||++.+++..+..            +....
T Consensus        54 ~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~------------~~~~~  121 (127)
T cd04030          54 RRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL------------SKGFT  121 (127)
T ss_pred             eEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccc------------cCCcc
Confidence            4566666666677777777776655555556899999998875  689999999999987632            45678


Q ss_pred             eEEEcc
Q psy6105         164 QWYPLM  169 (194)
Q Consensus       164 ~W~~L~  169 (194)
                      +||+|.
T Consensus       122 ~W~~L~  127 (127)
T cd04030         122 QWYDLT  127 (127)
T ss_pred             ceEECc
Confidence            999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=7.7e-20  Score=129.04  Aligned_cols=103  Identities=20%  Similarity=0.211  Sum_probs=78.0

Q ss_pred             EEEeeccCCC---CCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           9 FRADNYCRPT---IGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         9 ~r~~~~~a~~---l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      |.+++++|++   |.++|..|.+||||+|.++..     +.+|+++++++||+|||+|.                     
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~-----~~rTk~~~~~~nP~WnE~f~---------------------   55 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPK-----WVRTRTVEDSSNPRWNEQYT---------------------   55 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCE-----EeEcCcccCCCCCcceeEEE---------------------
Confidence            6799999999   899999999999999998654     44555555555555555555                     


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC------CCCceeEEEEeCCCCCCcchhhHHHHhhCCC
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI------GSDELMGCTAIGSSFIGIGRDHWLEMLDNPR  159 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~------~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~  159 (194)
                                          |.+....   ..|.|+|||++.+      .++++||++.+++..+.            .+
T Consensus        56 --------------------f~v~~~~---~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~------------~~  100 (126)
T cd08379          56 --------------------WPVYDPC---TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLE------------DD  100 (126)
T ss_pred             --------------------EEecCCC---CEEEEEEEECCCccccccCCCCceEEEEEEEHHHcc------------CC
Confidence                                4442211   2689999998876      38999999999998653            25


Q ss_pred             CceEeEEEccCCC
Q psy6105         160 QPVTQWYPLMETV  172 (194)
Q Consensus       160 ~~~~~W~~L~~~~  172 (194)
                      .....||+|.+..
T Consensus       101 ~~~~~~~~L~~~~  113 (126)
T cd08379         101 RVYAHSYPLLSLN  113 (126)
T ss_pred             CEEeeEEEeEeCC
Confidence            6678999998755

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=4.9e-20  Score=129.81  Aligned_cols=110  Identities=29%  Similarity=0.492  Sum_probs=86.7

Q ss_pred             ceeEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...+++.++.|++|+.++ ..|.+||||+|++.+......                                        
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~----------------------------------------   52 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQS----------------------------------------   52 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCc----------------------------------------
Confidence            457899999999999999 788999999999987521111                                        


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                       +++|++++++.||+|||+|.|.+...++....|.|+|||++.++++++||++.++++...            .+....+
T Consensus        53 -~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~------------~~~~~~~  119 (123)
T cd08521          53 -KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD------------LDSQQSE  119 (123)
T ss_pred             -eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEeccccc------------ccCCCcc
Confidence             456666666777777777777766555555689999999999999999999999998763            2556789


Q ss_pred             EEEc
Q psy6105         165 WYPL  168 (194)
Q Consensus       165 W~~L  168 (194)
                      ||+|
T Consensus       120 w~~l  123 (123)
T cd08521         120 WYPL  123 (123)
T ss_pred             EEEC
Confidence            9987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.83  E-value=1.1e-19  Score=129.00  Aligned_cols=113  Identities=21%  Similarity=0.333  Sum_probs=83.4

Q ss_pred             ceeEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      +..+++.+++|++|+++|.. |.+||||+|.+.+.  ..++.+|+++++|+||.|||+|.|.                  
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~--~~~~~kT~v~~~t~nP~wnE~F~f~------------------   74 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE--KEHKVKTRVLRKTRNPVYDETFTFY------------------   74 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC--cCceeeccEEcCCCCCceeeEEEEc------------------
Confidence            46799999999999999986 89999999999876  2223455555555555555555541                  


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                                            .+...++.+..|.++|||++.++++++||++.++|..+..          ..+.+.+.
T Consensus        75 ----------------------~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~  122 (128)
T cd08388          75 ----------------------GIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLV  122 (128)
T ss_pred             ----------------------ccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEE
Confidence                                  2333333445899999999999999999999999997742          11456889


Q ss_pred             EEEccC
Q psy6105         165 WYPLME  170 (194)
Q Consensus       165 W~~L~~  170 (194)
                      |.+|+|
T Consensus       123 ~~~~~~  128 (128)
T cd08388         123 SREIQP  128 (128)
T ss_pred             EEeccC
Confidence            999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.82  E-value=9.2e-20  Score=128.75  Aligned_cols=111  Identities=27%  Similarity=0.441  Sum_probs=84.1

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ....+++.+++|++|+.+|..+.+||||+|++.+......                                        
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~----------------------------------------   53 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKS----------------------------------------   53 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccc----------------------------------------
Confidence            3567999999999999999999999999999987521111                                        


Q ss_pred             EEeeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                       +++|++++++.||+|||+|.|.+ ...++....|.|+|||++.++++++||++.++++...             .....
T Consensus        54 -~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-------------~~~~~  119 (125)
T cd04031          54 -KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-------------LDDEP  119 (125)
T ss_pred             -cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-------------ccCCc
Confidence             45666666667777777777764 2234445689999999999999999999999998621             12236


Q ss_pred             eEEEcc
Q psy6105         164 QWYPLM  169 (194)
Q Consensus       164 ~W~~L~  169 (194)
                      .||+|+
T Consensus       120 ~W~~L~  125 (125)
T cd04031         120 HWYPLQ  125 (125)
T ss_pred             ceEECc
Confidence            899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.82  E-value=1.8e-19  Score=126.75  Aligned_cols=109  Identities=25%  Similarity=0.319  Sum_probs=78.7

Q ss_pred             eEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           8 SFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      +++++++.|++|++++ ..|.+||||+|.+...    ...+|+++++|                                
T Consensus         1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~----~~~kT~v~~kt--------------------------------   44 (121)
T cd08401           1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE----EVFRTKTVEKS--------------------------------   44 (121)
T ss_pred             CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCc----cEEEeeEEECC--------------------------------
Confidence            4778899999999974 5678999999998532    13445444444                                


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                               +||+|||+|.|.++..   ...|.+.|||++.++++++||.+.++++.+..            +.....||
T Consensus        45 ---------~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~------------~~~~~~w~  100 (121)
T cd08401          45 ---------LCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHK------------YYGKDTWF  100 (121)
T ss_pred             ---------CCCccCCeEEEEcCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccC------------CCCcEeeE
Confidence                     4555555555554422   13789999999999999999999999986532            55678999


Q ss_pred             EccCCCCCCc
Q psy6105         167 PLMETVPGQI  176 (194)
Q Consensus       167 ~L~~~~~~~~  176 (194)
                      +|++...+.+
T Consensus       101 ~L~~~~~~~~  110 (121)
T cd08401         101 PLQPVDADSE  110 (121)
T ss_pred             EEEccCCCCc
Confidence            9998755443

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.82  E-value=2e-19  Score=127.04  Aligned_cols=110  Identities=25%  Similarity=0.480  Sum_probs=82.5

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+.+|..|.+||||++.+.++.  ..+.+|+++++++||.|||+|.                     
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~~~kT~v~~~t~~P~Wne~f~---------------------   71 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNLNPHWNETFL---------------------   71 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC--CcceeeeeecCCCCCccceeEE---------------------
Confidence            56799999999999999999999999999997651  2234555555555555555554                     


Q ss_pred             EeeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                                          |.+ +.+.+....|.++|||++.++++++||++.+++..+.            .+.....
T Consensus        72 --------------------f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~  119 (125)
T cd08386          72 --------------------FEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTF  119 (125)
T ss_pred             --------------------EcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcce
Confidence                                432 1222334589999999999999999999999999764            2566789


Q ss_pred             EEEccC
Q psy6105         165 WYPLME  170 (194)
Q Consensus       165 W~~L~~  170 (194)
                      ||.|+|
T Consensus       120 W~~l~~  125 (125)
T cd08386         120 WKDLKP  125 (125)
T ss_pred             EEecCC
Confidence            999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.81  E-value=5.1e-19  Score=124.71  Aligned_cols=106  Identities=21%  Similarity=0.392  Sum_probs=78.2

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|++++++|++|+++|..|.+||||+|++...     ..+|+++++|+                                
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~-----~~kT~v~~~t~--------------------------------   43 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ-----TLETSVVKKSC--------------------------------   43 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCE-----EEeceeecCCC--------------------------------
Confidence            37899999999999999999999999998532     34455555554                                


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                               ||+|||+|.|.+....  ...|.|+|||++.++++++||++.+++..+..            +.....||.
T Consensus        44 ---------nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~------------~~~~~~w~~  100 (123)
T cd04025          44 ---------YPRWNEVFEFELMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ------------AKQEEGWFR  100 (123)
T ss_pred             ---------CCccCcEEEEEcCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHccc------------CCCCCCEEE
Confidence                     4555555555443322  24799999999999999999999999975531            334578999


Q ss_pred             ccCCCC
Q psy6105         168 LMETVP  173 (194)
Q Consensus       168 L~~~~~  173 (194)
                      |.+...
T Consensus       101 L~~~~~  106 (123)
T cd04025         101 LLPDPR  106 (123)
T ss_pred             CCCCCC
Confidence            998653

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.80  E-value=4.5e-19  Score=126.59  Aligned_cols=129  Identities=22%  Similarity=0.343  Sum_probs=91.4

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      |++++++|++|+.+|..|.+||||+|++.+....                                       ....+++
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~---------------------------------------~~~~~~k   42 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGN---------------------------------------GEIDSVQ   42 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCC---------------------------------------Cccccee
Confidence            7899999999999999999999999999854000                                       0011345


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCC---CceEeE
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPR---QPVTQW  165 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~---~~~~~W  165 (194)
                      |.+++++.||+|||+|.|.+...   ...|.++|||++.++++++||++.++++++..+         .+.   .....|
T Consensus        43 T~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~---------~~~~~~~~~~~~  110 (133)
T cd04033          43 TKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTE---------TPGNERRYTFKD  110 (133)
T ss_pred             eeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCc---------Cccccccccchh
Confidence            66666667777777777766432   247899999999999999999999999865321         111   245699


Q ss_pred             EEccCCCCCCccccCCCCcceeeeec
Q psy6105         166 YPLMETVPGQIPLSHSSNLPSSLSCL  191 (194)
Q Consensus       166 ~~L~~~~~~~~~~~~~~~~~~~~~~~  191 (194)
                      |+|.+.....   ...|++.+++.||
T Consensus       111 ~~l~~~~~~~---~~~G~l~~~~~~~  133 (133)
T cd04033         111 YLLRPRSSKS---RVKGHLRLYMAYL  133 (133)
T ss_pred             eeeeecCCCC---cceeEEEEEEeeC
Confidence            9998653322   2466777667765

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.2e-18  Score=122.58  Aligned_cols=120  Identities=21%  Similarity=0.271  Sum_probs=86.6

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +++.+..|++|+.+|..|.+||||++.+...    ...+|+++                                     
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~----~~~kT~~~-------------------------------------   40 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGK----TVYKSKTI-------------------------------------   40 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCE----EEEEeeec-------------------------------------
Confidence            6899999999999999999999999987531    23444444                                     


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                          +++.||+|||+|.|.+..  .. ..|.|+|||++.++++++||++.+++..+.            .+.....|++|
T Consensus        41 ----~~t~nP~Wne~f~f~v~~--~~-~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~------------~~~~~~~~~~L  101 (121)
T cd04042          41 ----YKNLNPVWDEKFTLPIED--VT-QPLYIKVFDYDRGLTDDFMGSAFVDLSTLE------------LNKPTEVKLKL  101 (121)
T ss_pred             ----cCCCCCccceeEEEEecC--CC-CeEEEEEEeCCCCCCCcceEEEEEEHHHcC------------CCCCeEEEEEC
Confidence                445555555555555432  12 479999999999999999999999998653            26678899999


Q ss_pred             cCCCCCCccccCCCCcceeeeecC
Q psy6105         169 METVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      .+...    ....|.+.+.+++-|
T Consensus       102 ~~~~~----~~~~G~l~l~~~~~~  121 (121)
T cd04042         102 EDPNS----DEDLGYISLVVTLTP  121 (121)
T ss_pred             CCCCC----ccCceEEEEEEEECC
Confidence            76543    124556666566543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=1.2e-18  Score=123.31  Aligned_cols=123  Identities=21%  Similarity=0.315  Sum_probs=87.3

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ..+.|++.++.|++|+++   +.+||||+|.+...    ...+|++                                  
T Consensus         2 ~~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~----~~~kT~v----------------------------------   40 (126)
T cd08400           2 QVRSLQLNVLEAHKLPVK---HVPHPYCVISLNEV----KVARTKV----------------------------------   40 (126)
T ss_pred             ceeEEEEEEEEeeCCCCC---CCCCeeEEEEECCE----eEEEeec----------------------------------
Confidence            467899999999999875   47899999999532    1233333                                  


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                             + ++.||.|||+|.|.+....+  ..+.|.|||++.++++++||++.+++..+.            ++...+.
T Consensus        41 -------~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~------------~~~~~~~   98 (126)
T cd08400          41 -------R-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQ------------NGQETDE   98 (126)
T ss_pred             -------C-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHcc------------CCCcccE
Confidence                   2 24556666666665433332  267889999999999999999999998653            2566789


Q ss_pred             EEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         165 WYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       165 W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      ||+|.+...  .+....|++.++++|.+
T Consensus        99 W~~L~~~~~--~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          99 WYPLSSASP--LKGGEWGSLRIRARYSH  124 (126)
T ss_pred             eEEcccCCC--CCCCcCcEEEEEEEEEc
Confidence            999988643  22335577888888764

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.80  E-value=1.1e-18  Score=119.82  Aligned_cols=102  Identities=22%  Similarity=0.308  Sum_probs=76.2

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      |.+.++.|++|+..+..|.+||||+|+++..     ..                                         +
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~-----~~-----------------------------------------k   35 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKT-----TQ-----------------------------------------K   35 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCE-----EE-----------------------------------------e
Confidence            5789999999999999999999999998642     33                                         4


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                      |++++++.||+|||+|.|.+....  ...|.|+|+|++.   +++||++.+++.          +++..++....+||+|
T Consensus        36 T~v~~~t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~----------~l~~~~~~~~~~w~~L  100 (105)
T cd04050          36 SKVKERTNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT---GKSLGSLTLPLS----------ELLKEPDLTLDQPFPL  100 (105)
T ss_pred             CccccCCCCCcccceEEEEeCCCC--CCEEEEEEEECCC---CCccEEEEEEHH----------HhhccccceeeeeEec
Confidence            444445555566666666654322  2378999999875   789999999997          4555566678999999


Q ss_pred             cCC
Q psy6105         169 MET  171 (194)
Q Consensus       169 ~~~  171 (194)
                      .+.
T Consensus       101 ~~~  103 (105)
T cd04050         101 DNS  103 (105)
T ss_pred             CCC
Confidence            764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.79  E-value=2.6e-18  Score=120.81  Aligned_cols=108  Identities=23%  Similarity=0.358  Sum_probs=78.1

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      +|.++++.|++|+++|..|.+||||+|.+...    ...+|+++++|+||.|||.|                        
T Consensus         1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~----~~~kT~v~~~t~nP~Wne~f------------------------   52 (121)
T cd04054           1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNE----VIIRTATVWKTLNPFWGEEY------------------------   52 (121)
T ss_pred             CEEEEEEEeeCCcCCCCCCCCCceEEEEECCE----eeeeeeeEcCCCCCcccceE------------------------
Confidence            47899999999999999999999999998532    13455555555555555544                        


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                                       .|.+...   ...|.|.|||++.++++++||++.+++..+          . ..+....+|++
T Consensus        53 -----------------~~~~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~----------~-~~~~~~~~W~~  101 (121)
T cd04054          53 -----------------TVHLPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVI----------S-AHPRGIDGWMN  101 (121)
T ss_pred             -----------------EEeeCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHh----------c-cCCCCCCcEEE
Confidence                             4444321   137889999999999999999999997532          2 23445789999


Q ss_pred             ccCCCCC
Q psy6105         168 LMETVPG  174 (194)
Q Consensus       168 L~~~~~~  174 (194)
                      |++...+
T Consensus       102 L~~~~~~  108 (121)
T cd04054         102 LTEVDPD  108 (121)
T ss_pred             CeeeCCC
Confidence            9876533

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=2.3e-18  Score=122.04  Aligned_cols=109  Identities=20%  Similarity=0.314  Sum_probs=78.8

Q ss_pred             eEEEeeccCCCCCCCCC--CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           8 SFRADNYCRPTIGNRSI--PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~--~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      .+++.+++|++|+++|.  .|.+||||++.++..     +.+|+++++|+||.|||.                       
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~-----~~kT~~~~~t~~P~Wne~-----------------------   53 (128)
T cd04024           2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQ-----RFKTQTIPNTLNPKWNYW-----------------------   53 (128)
T ss_pred             EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCE-----EEecceecCCcCCccCCc-----------------------
Confidence            47899999999999998  899999999987532     345555555555555544                       


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhC-CCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDN-PRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~-p~~~~~~  164 (194)
                                        |.|.+..  .....|.|+|||++.++++++||++.+++..+          +.. ......+
T Consensus        54 ------------------f~~~~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~----------~~~~~~~~~~~  103 (128)
T cd04024          54 ------------------CEFPIFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEV----------FADGKTGQSDK  103 (128)
T ss_pred             ------------------EEEEecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHh----------hcccccCccce
Confidence                              4444432  12248999999999988999999999999744          221 1234679


Q ss_pred             EEEccCCCCC
Q psy6105         165 WYPLMETVPG  174 (194)
Q Consensus       165 W~~L~~~~~~  174 (194)
                      ||+|.+...+
T Consensus       104 w~~L~~~~~~  113 (128)
T cd04024         104 WITLKSTRPG  113 (128)
T ss_pred             eEEccCcccC
Confidence            9999987554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.79  E-value=1.7e-18  Score=121.41  Aligned_cols=108  Identities=25%  Similarity=0.320  Sum_probs=83.4

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +++.+++|++|+..|..|.+||||++.+.+..  ..                                         +++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~-----------------------------------------~~k   38 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DE-----------------------------------------KKR   38 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--Cc-----------------------------------------cCc
Confidence            67899999999999999999999999986430  11                                         345


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                      |++++++.||+|||+|.|.+....  ...|.|+|||++.+ ++++||++.++++.+.            ++.....|++|
T Consensus        39 T~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~------------~g~~~~~~~~L  103 (119)
T cd04036          39 TKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV-MDDHLGTVLFDVSKLK------------LGEKVRVTFSL  103 (119)
T ss_pred             cceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC-CCcccEEEEEEHHHCC------------CCCcEEEEEEC
Confidence            666666677777777777665432  24799999999988 8999999999998653            36778999999


Q ss_pred             cCCCCC
Q psy6105         169 METVPG  174 (194)
Q Consensus       169 ~~~~~~  174 (194)
                      .+...|
T Consensus       104 ~~~~~g  109 (119)
T cd04036         104 NPQGKE  109 (119)
T ss_pred             CCCCCc
Confidence            876433

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.79  E-value=2.7e-18  Score=122.99  Aligned_cols=133  Identities=21%  Similarity=0.378  Sum_probs=92.4

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      -+|+.++.|++|+++|..|.+||||+|.+...     +.+|+++++|+||.|||.|.|.+.       .+. +       
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~v~~~t~nP~Wne~~~f~~~-------~~~-~-------   61 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQ-----SQETEVIKETLSPTWDQTLIFDEV-------ELY-G-------   61 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCe-----eeEeeeEcCCCCCccCcEEEEeee-------ecc-C-------
Confidence            47999999999999999999999999998643     567888888888888887776421       000 0       


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                               +|..       +. .  ....|.|+|||++..+++++||++.+.......+  .      .++.+..+||+
T Consensus        62 ---------~~~~-------~~-~--~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~--~------~~~~~~~~W~~  114 (135)
T cd04017          62 ---------SPEE-------IA-Q--NPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDL--E------EDFPPKLQWFP  114 (135)
T ss_pred             ---------ChHH-------hh-c--CCCEEEEEEEeCcCCCCCccceEEEeeeeeeccc--C------CCCCCCceEEE
Confidence                     0000       00 0  1137899999999999999999999743221110  0      14677889999


Q ss_pred             ccCCCCCCccccCCCCcceeeeecCC
Q psy6105         168 LMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       168 L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      |....      ...|++.++++.++.
T Consensus       115 L~~~~------~~~Geil~~~~~~~~  134 (135)
T cd04017         115 IYKGG------QSAGELLAAFELIEV  134 (135)
T ss_pred             eecCC------CchhheeEEeEEEEe
Confidence            96432      256788888877664

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.79  E-value=2.3e-18  Score=121.26  Aligned_cols=110  Identities=21%  Similarity=0.334  Sum_probs=84.2

Q ss_pred             ceeEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...+.+.++.|++|+++| ..|.+||||++++.++.  ..                                        
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~----------------------------------------   50 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RR----------------------------------------   50 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CC----------------------------------------
Confidence            456899999999999999 68899999999998651  11                                        


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                       .++|++++++.||+|||+|.|.++...+....|.|.|||++..+++++||++.++|+.+..            ......
T Consensus        51 -~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~  117 (123)
T cd08390          51 -SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL------------VKGGVV  117 (123)
T ss_pred             -ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceec------------CCCceE
Confidence             2345555556666666666666655444445899999999998889999999999997642            455679


Q ss_pred             EEEccC
Q psy6105         165 WYPLME  170 (194)
Q Consensus       165 W~~L~~  170 (194)
                      |++|.+
T Consensus       118 w~~L~~  123 (123)
T cd08390         118 WRDLEP  123 (123)
T ss_pred             EEeCCC
Confidence            999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.78  E-value=2e-18  Score=120.44  Aligned_cols=103  Identities=24%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +++.++.|++|+++|..|.+||||++++...     +.+|+++++|+||.|||.|.                        
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----~~kT~v~~~t~nP~Wne~f~------------------------   52 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNE-----KYKSKVCSKTLNPQWLEQFD------------------------   52 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEECCE-----eEecccccCCCCCceeEEEE------------------------
Confidence            6889999999999999999999999998532     34555555555555555554                        


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                                       |.+...  ....|.|+|||++.++++++||++.++++.+.            .+.....|++|
T Consensus        53 -----------------f~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~------------~~~~~~~w~~L  101 (116)
T cd08376          53 -----------------LHLFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALP------------REQTHSLELEL  101 (116)
T ss_pred             -----------------EEecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCC------------CCCceEEEEEc
Confidence                             444322  12478999999999989999999999998653            25667899999


Q ss_pred             cCC
Q psy6105         169 MET  171 (194)
Q Consensus       169 ~~~  171 (194)
                      .+.
T Consensus       102 ~~~  104 (116)
T cd08376         102 EDG  104 (116)
T ss_pred             cCC
Confidence            764

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>KOG1030|consensus

Probab=99.78  E-value=1e-18  Score=125.99  Aligned_cols=92  Identities=30%  Similarity=0.370  Sum_probs=72.9

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .||+.+..|.+|..+|..+++||||.+.++.+     +.+|+                                      
T Consensus         7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q-----~lkT~--------------------------------------   43 (168)
T KOG1030|consen    7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ-----KLKTR--------------------------------------   43 (168)
T ss_pred             EEEEEEEeecCeeeeccccCCCCeEEEEECCe-----eeeee--------------------------------------
Confidence            58999999999999999999999999999876     44444                                      


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                         ++++++||+|||.|+|.+....   ..|.++|||+|.++.||+||.+.|++..+-.+.
T Consensus        44 ---~v~~n~NPeWNe~ltf~v~d~~---~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   44 ---VVYKNLNPEWNEELTFTVKDPN---TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             ---eecCCCCCcccceEEEEecCCC---ceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence               4445555555555566664432   489999999999999999999999998765433

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.78  E-value=4e-18  Score=122.37  Aligned_cols=132  Identities=20%  Similarity=0.311  Sum_probs=99.1

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      |+++++.|++|+.+ ..|.+||||+|++... ....+.+|++++++.||.|||.|.|.+...        ..+.   .  
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~--------~~~~---~--   65 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIG--------FSYE---K--   65 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccc--------cccc---c--
Confidence            57899999999999 7899999999999842 234578999999999999999999885511        0000   0  


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                          +           .+.+...++....|.|+|||++.++++++||++.+++..+.            .......||+|
T Consensus        66 ----~-----------~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L  118 (137)
T cd08675          66 ----K-----------SFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFL  118 (137)
T ss_pred             ----c-----------ccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEec
Confidence                0           02233455566789999999998889999999999998653            24567899999


Q ss_pred             cCCCCCCccccCCC
Q psy6105         169 METVPGQIPLSHSS  182 (194)
Q Consensus       169 ~~~~~~~~~~~~~~  182 (194)
                      .+..+.....+-+|
T Consensus       119 ~~~~~~~~~~~~~~  132 (137)
T cd08675         119 QPREAPGTRSSNDG  132 (137)
T ss_pred             CCcCCCCCCccccC
Confidence            99876655444443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.78  E-value=2e-18  Score=121.41  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=77.8

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      |+++++.|++|+++    .+||||++.++..     +.                                         +
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~-----~~-----------------------------------------k   31 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNY-----KG-----------------------------------------S   31 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCc-----cc-----------------------------------------c
Confidence            57888889988877    6788888887532     33                                         4


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                      |++++++.||+|||+|.|.+..  +....|.++|||++.. ++++||++.++++.+..+..       ..+....+||+|
T Consensus        32 T~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~-------~~~~~~~~W~~L  101 (121)
T cd08378          32 TKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVP-------PDSPLAPQWYRL  101 (121)
T ss_pred             ccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCC-------CCCCCCcceEEc
Confidence            4445555555555555555432  1335899999999877 78999999999987632110       013346799999


Q ss_pred             cCCCCCCccccCCCCcceee
Q psy6105         169 METVPGQIPLSHSSNLPSSL  188 (194)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~  188 (194)
                      .+...  ...+|...|.+++
T Consensus       102 ~~~~~--~~~~G~i~l~~~~  119 (121)
T cd08378         102 EDKKG--GRVGGELMLAVWF  119 (121)
T ss_pred             cCCCC--CccceEEEEEEEe
Confidence            98764  2344554544443

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.77  E-value=7.6e-18  Score=123.69  Aligned_cols=100  Identities=28%  Similarity=0.440  Sum_probs=78.2

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      +||||+|.+.+.    ...+|++++++.||+|||+|.|.+....   ..|.++|+|++.++ +++||++.++++.+.   
T Consensus        58 sDPYv~V~l~~~----~~~rT~v~~~~~nP~WnE~F~~~~~~~~---~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~---  126 (158)
T cd04015          58 SDPYATVDLAGA----RVARTRVIENSENPVWNESFHIYCAHYA---SHVEFTVKDNDVVG-AQLIGRAYIPVEDLL---  126 (158)
T ss_pred             cCeEEEEEECCe----EeeEEEEeCCCCCCccceEEEEEccCCC---CEEEEEEEeCCCcC-CcEEEEEEEEhHHcc---
Confidence            688998888432    2468888888999999999998875322   47999999998875 589999999998653   


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeee
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSC  190 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~  190 (194)
                               .+....+|++|.+.  +.++..+.+.+.+++.|
T Consensus       127 ---------~g~~~~~w~~L~~~--~~~~~~~~~~l~v~~~f  157 (158)
T cd04015         127 ---------SGEPVEGWLPILDS--NGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ---------CCCCcceEEECcCC--CCCCCCCCCEEEEEEEE
Confidence                     25677899999875  35577777888888776

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.77  E-value=2.7e-18  Score=120.10  Aligned_cols=103  Identities=21%  Similarity=0.319  Sum_probs=75.6

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++++.+|++|+.+|..|.+||||+|.++..     +.+|+++.                                   
T Consensus         2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~-----------------------------------   41 (118)
T cd08681           2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGV-----TKKTKTDF-----------------------------------   41 (118)
T ss_pred             EEEEEEEEccCCCCCCcCCCCCceEEEEECCC-----cccccccc-----------------------------------
Confidence            58999999999999999999999999998653     33343332                                   


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                           +++.||+|||.|.|.+...  ....|.|+|||++..+ +++||++.+++..+          +.  +....+||+
T Consensus        42 -----~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~----------~~--~~~~~~w~~  101 (118)
T cd08681          42 -----RGGQHPEWDEELRFEITED--KKPILKVAVFDDDKRK-PDLIGDTEVDLSPA----------LK--EGEFDDWYE  101 (118)
T ss_pred             -----CCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCCC-CcceEEEEEecHHH----------hh--cCCCCCcEE
Confidence                 2245566666666655433  1248999999998876 89999999999853          22  334689999


Q ss_pred             ccC
Q psy6105         168 LME  170 (194)
Q Consensus       168 L~~  170 (194)
                      |..
T Consensus       102 L~~  104 (118)
T cd08681         102 LTL  104 (118)
T ss_pred             ecc
Confidence            975

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.77  E-value=4.8e-18  Score=119.80  Aligned_cols=107  Identities=21%  Similarity=0.360  Sum_probs=79.2

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++++++|++|+.+|..|.+||||++++.+.    .                                         .+
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~----~-----------------------------------------~~   35 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGG----Q-----------------------------------------TH   35 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCc----c-----------------------------------------ce
Confidence            37999999999999999999999999998521    1                                         34


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCC--CceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS--DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~--~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +|++++++.||.|||+|.|.+..    ...|.|+|||++.+++  +++||++.+++.++          +. .......|
T Consensus        36 kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l----------~~-~~~~~~~~  100 (123)
T cd08382          36 STDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAV----------LP-LKDTGYQR  100 (123)
T ss_pred             EccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHc----------cc-cCCCccce
Confidence            55555556666666666666643    2489999999988865  58999999999854          22 23344679


Q ss_pred             EEccCCCCC
Q psy6105         166 YPLMETVPG  174 (194)
Q Consensus       166 ~~L~~~~~~  174 (194)
                      ++|++....
T Consensus       101 ~~l~~~~~~  109 (123)
T cd08382         101 LDLRKLKKS  109 (123)
T ss_pred             eEeecCCCC
Confidence            999777654

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.77  E-value=4.7e-18  Score=123.49  Aligned_cols=130  Identities=26%  Similarity=0.314  Sum_probs=86.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      +|.++++.|++|+++|.++... +.+     .     ..+                .+.-.+||||+|.+.+.     +.
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~-~~~-----~-----~~~----------------~~~~~~DPYV~V~~~g~-----~~   48 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMAN-VKK-----A-----FLG----------------EKKELVDPYVEVSFAGQ-----KV   48 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhcc-cee-----c-----ccc----------------CCCCCcCcEEEEEECCE-----ee
Confidence            4778999999999998654211 000     0     000                00001467777766432     45


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC-cchhhHHHHhhCCCCceEeEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      +|++++++.||+|||+|.|.+..+... ..|.|+|||+|..+++++||.+.+++..+. .+.+.|.      .....+|+
T Consensus        49 kT~v~~~t~nPvWNE~f~f~v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~l------p~~~p~W~  121 (151)
T cd04018          49 KTSVKKNSYNPEWNEQIVFPEMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFL------PTFGPSFV  121 (151)
T ss_pred             ecceEcCCCCCCcceEEEEEeeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccC------CccCceEE
Confidence            777777888888888888876444333 489999999999999999999999998543 2223332      12346999


Q ss_pred             EccCCCCCCc
Q psy6105         167 PLMETVPGQI  176 (194)
Q Consensus       167 ~L~~~~~~~~  176 (194)
                      .|++.+.+..
T Consensus       122 ~lyg~~~~~~  131 (151)
T cd04018         122 NLYGSPREYS  131 (151)
T ss_pred             EeecCccccc
Confidence            9999876654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.77  E-value=3.9e-18  Score=118.10  Aligned_cols=106  Identities=28%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .++++++.|++|+    +|.+||||+++++..     +++|+++++++||.|||.|.|.+.                   
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~-----~~kT~~~~~t~nP~wne~f~f~~~-------------------   56 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQ-----KKYTSVKKGTNCPFYNEYFFFNFH-------------------   56 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEECCE-----eeeeeEEeccCCCccccEEEEecC-------------------
Confidence            6899999999998    678999999998743     445666666666666666554422                   


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                                          .+..++.+..|.|+|||++.++++++||++.++++.+..+..         .....+|++
T Consensus        57 --------------------~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~---------~~~~~~w~~  107 (111)
T cd04011          57 --------------------ESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPD---------HAFLRKWLL  107 (111)
T ss_pred             --------------------CCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCC---------CcceEEEEE
Confidence                                011122345899999999998889999999999997643222         245689999


Q ss_pred             ccC
Q psy6105         168 LME  170 (194)
Q Consensus       168 L~~  170 (194)
                      |.+
T Consensus       108 L~~  110 (111)
T cd04011         108 LTD  110 (111)
T ss_pred             eeC
Confidence            965

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.76  E-value=1.3e-17  Score=119.56  Aligned_cols=117  Identities=24%  Similarity=0.318  Sum_probs=83.5

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      +--.+++.++.|++|++.|..|.+||||++.++..     ..+|                                    
T Consensus        13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~-----~~kT------------------------------------   51 (136)
T cd08375          13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ-----EHKT------------------------------------   51 (136)
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCE-----eeec------------------------------------
Confidence            44578999999999999999999999999998532     3444                                    


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                           ++++++.||.|||+|.|.+...  ....|.|+|||++.++++++||++.+++.++..+..       ..+.+..+
T Consensus        52 -----~vi~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~~~  117 (136)
T cd08375          52 -----KVVSDTLNPKWNSSMQFFVKDL--EQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETK-------ESKGPITK  117 (136)
T ss_pred             -----cccCCCCCCccCceEEEEecCc--cCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccc-------cCCCcEEE
Confidence                 4444555555555555555321  224899999999999999999999999986543211       22456788


Q ss_pred             EEEccCCCCCCc
Q psy6105         165 WYPLMETVPGQI  176 (194)
Q Consensus       165 W~~L~~~~~~~~  176 (194)
                      |..|.....|+.
T Consensus       118 ~~~~~~~~~g~i  129 (136)
T cd08375         118 RLLLHEVPTGEV  129 (136)
T ss_pred             EeccccccceeE
Confidence            998865554543

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=3.3e-18  Score=118.54  Aligned_cols=93  Identities=20%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             eEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           8 SFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      .+++.++.|++|+.+|.. |.+||||+|++.+.+  ....+|+++++                                 
T Consensus         2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~---------------------------------   46 (111)
T cd04041           2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRK---------------------------------   46 (111)
T ss_pred             EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECC---------------------------------
Confidence            478999999999999998 999999999997541  12344444444                                 


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSF  143 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~  143 (194)
                              +.||+|||+|.|.+...++ ....|.++|||++.++++++||++.+++..
T Consensus        47 --------t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~   96 (111)
T cd04041          47 --------DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE   96 (111)
T ss_pred             --------CCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence                    4555555555554433322 235899999999999999999999999974

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.76  E-value=7.3e-18  Score=120.07  Aligned_cols=115  Identities=30%  Similarity=0.534  Sum_probs=87.3

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.+++|++|+..|..|.+||||+|.+.+.+....                                         .
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~-----------------------------------------~   51 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNET-----------------------------------------K   51 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCc-----------------------------------------e
Confidence            56899999999999999999999999999976422122                                         3


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      ++|++++++.+|.|||+|.|.+...+. ...|.|+|||++..+++++||++.++++.+          +   ......||
T Consensus        52 ~rT~v~~~~~~P~wne~f~~~~~~~~~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l----------~---~~~~~~w~  117 (131)
T cd04026          52 QKTKTIKKTLNPVWNETFTFDLKPADK-DRRLSIEVWDWDRTTRNDFMGSLSFGVSEL----------I---KMPVDGWY  117 (131)
T ss_pred             ecceeecCCCCCCccceEEEeCCchhc-CCEEEEEEEECCCCCCcceeEEEEEeHHHh----------C---cCccCceE
Confidence            455555566666666666666544332 348999999999888999999999999754          2   22668999


Q ss_pred             EccCCCCCCc
Q psy6105         167 PLMETVPGQI  176 (194)
Q Consensus       167 ~L~~~~~~~~  176 (194)
                      +|.+..+|..
T Consensus       118 ~L~~~~~~~~  127 (131)
T cd04026         118 KLLNQEEGEY  127 (131)
T ss_pred             ECcCcccccc
Confidence            9999887764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>KOG1013|consensus

Probab=99.75  E-value=1.1e-19  Score=142.69  Aligned_cols=165  Identities=26%  Similarity=0.377  Sum_probs=147.9

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC------------------
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP------------------   68 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~------------------   68 (194)
                      ..+-.....|.+|.++|++|..|||+++.++|..++..+.+|++..+++||.|+|+-.+..-                  
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~  172 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND  172 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence            34456667789999999999999999999999877777899999999999999998877533                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy6105          69 --------------------------------------------------------------------------------   68 (194)
Q Consensus        69 --------------------------------------------------------------------------------   68 (194)
                                                                                                      
T Consensus       173 ~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng  252 (362)
T KOG1013|consen  173 KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNG  252 (362)
T ss_pred             ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCC
Confidence                                                                                            


Q ss_pred             -CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          69 -ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        69 -~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                       +||||++.+.+.-.+..+++|.+.+++.+|.|++.|.|.+.+..|....+.|+|||++..+..+++|-+..++...+.-
T Consensus       253 ~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr~~v  332 (362)
T KOG1013|consen  253 YSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRRGEV  332 (362)
T ss_pred             CCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccccchh
Confidence             8999999998776777889999999999999999999999999998889999999999988999999999888888778


Q ss_pred             hhhHHHHhhCCCCceEeEEEccCC
Q psy6105         148 RDHWLEMLDNPRQPVTQWYPLMET  171 (194)
Q Consensus       148 ~~~W~~~l~~p~~~~~~W~~L~~~  171 (194)
                      ..||.+.+..+......||.|...
T Consensus       333 ~~h~gr~~~~~~a~~~~ss~l~~~  356 (362)
T KOG1013|consen  333 HKHWGRCLFDQDANFERSSGLETE  356 (362)
T ss_pred             hcCccccccccccccccccccccc
Confidence            899999999999999999999763

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.1e-17  Score=118.51  Aligned_cols=102  Identities=27%  Similarity=0.430  Sum_probs=74.2

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|++.+++|++|+.+|..|.+||||+|+++..     ..+|+++++|+||.|||.|.                       
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~~v~~t~~P~Wne~f~-----------------------   53 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKT-----KKRTKTIPQNLNPVWNEKFH-----------------------   53 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCE-----eeecceecCCCCCccceEEE-----------------------
Confidence            58999999999999999999999999998532     34555555555555555554                       


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-----------CCCceeEEEEeCCCCCCcchhhHHHHhh
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-----------GSDELMGCTAIGSSFIGIGRDHWLEMLD  156 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-----------~~~~~iG~~~i~l~~~~~~~~~W~~~l~  156 (194)
                                        |.+...   ...|.|+|||+|..           +.+++||++.+++..+.           
T Consensus        54 ------------------f~~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~-----------  101 (127)
T cd04027          54 ------------------FECHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS-----------  101 (127)
T ss_pred             ------------------EEecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc-----------
Confidence                              433211   13688889998742           47899999999997542           


Q ss_pred             CCCCceEeEEEccCCC
Q psy6105         157 NPRQPVTQWYPLMETV  172 (194)
Q Consensus       157 ~p~~~~~~W~~L~~~~  172 (194)
                         .....||.|.+..
T Consensus       102 ---~~~~~w~~L~~~~  114 (127)
T cd04027         102 ---GEMDVWYNLEKRT  114 (127)
T ss_pred             ---CCCCeEEECccCC
Confidence               2346899998765

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.75  E-value=1.2e-17  Score=121.50  Aligned_cols=119  Identities=23%  Similarity=0.392  Sum_probs=87.5

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE--EEee-------EEecCCCCceeeeeEEEecCCCceeEE
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR--KKRT-------SVKKNSLNPFYNEALLFDVPANPYVKV   75 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~--~~~T-------~~~~~t~nP~w~e~f~f~~~~dpyv~v   75 (194)
                      -...+++.++.|++|.++|..|.+||||+|.+.+......  +.++       ...++.+++                  
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------   87 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPA------------------   87 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccc------------------
Confidence            3567899999999999999999999999999976421110  0111       111111111                  


Q ss_pred             EEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHh
Q psy6105          76 YLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEML  155 (194)
Q Consensus        76 ~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l  155 (194)
                              ...++|.+++++.||.|||+|.|.+...  ....|.|+|||++    +++||++.++++.+.          
T Consensus        88 --------~~~~kT~v~~~tlnP~WnE~F~f~v~~~--~~~~L~i~V~D~d----d~~IG~v~i~l~~l~----------  143 (153)
T cd08676          88 --------KSIKVTEVKPQTLNPVWNETFRFEVEDV--SNDQLHLDIWDHD----DDFLGCVNIPLKDLP----------  143 (153)
T ss_pred             --------cccEecceecCCCCCccccEEEEEeccC--CCCEEEEEEEecC----CCeEEEEEEEHHHhC----------
Confidence                    1367899999999999999999998532  3458999999987    889999999997542          


Q ss_pred             hCCCCceEeEEEc
Q psy6105         156 DNPRQPVTQWYPL  168 (194)
Q Consensus       156 ~~p~~~~~~W~~L  168 (194)
                         +..+.+||+|
T Consensus       144 ---~~~~d~W~~L  153 (153)
T cd08676         144 ---SCGLDSWFKL  153 (153)
T ss_pred             ---CCCCCCeEeC
Confidence               2346899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.75  E-value=2.4e-17  Score=116.80  Aligned_cols=117  Identities=24%  Similarity=0.320  Sum_probs=81.1

Q ss_pred             eccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeeceee
Q psy6105          13 NYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVK   92 (194)
Q Consensus        13 ~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~~~   92 (194)
                      +.+|++|+.  ..|.+||||+|++...     +.                                         +|+++
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~-----~~-----------------------------------------kT~v~   33 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGV-----KK-----------------------------------------KTRVL   33 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCE-----ee-----------------------------------------eccee
Confidence            467888877  6778888888887532     33                                         44444


Q ss_pred             cCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEccCCC
Q psy6105          93 KNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV  172 (194)
Q Consensus        93 ~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~  172 (194)
                      +++.||+|||+|.|.+.........|.|+|||++..+++++||++.++++.+..            +.....|++|.+..
T Consensus        34 ~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~------------~~~~~~~~~L~~~~  101 (127)
T cd08373          34 ENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVS------------EGLLEVTEPLLDSN  101 (127)
T ss_pred             CCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHccc------------CCceEEEEeCcCCC
Confidence            445555555555555533222345899999999999899999999999986532            45678999997644


Q ss_pred             CCCccccCCCCcceeeeecCC
Q psy6105         173 PGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      .  .+  ..+.+.+.++|.|.
T Consensus       102 ~--~~--~~~~l~l~~~~~~~  118 (127)
T cd08373         102 G--RP--TGATISLEVSYQPP  118 (127)
T ss_pred             C--Cc--ccEEEEEEEEEeCC
Confidence            2  22  23578888888875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.75  E-value=2.6e-17  Score=116.48  Aligned_cols=121  Identities=18%  Similarity=0.289  Sum_probs=82.2

Q ss_pred             EEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeec
Q psy6105          10 RADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRT   89 (194)
Q Consensus        10 r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT   89 (194)
                      -+++++|++|+.  ..|.+||||++.+...   ..+.+|                                         
T Consensus         2 ~v~v~~A~~L~~--~~g~~dpyv~v~~~~~---~~~~kT-----------------------------------------   35 (126)
T cd08678           2 LVKNIKANGLSE--AAGSSNPYCVLEMDEP---PQKYQS-----------------------------------------   35 (126)
T ss_pred             EEEEEEecCCCC--CCCCcCCEEEEEECCC---CcEEEe-----------------------------------------
Confidence            478899999987  7789999999998521   113344                                         


Q ss_pred             eeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEcc
Q psy6105          90 SVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM  169 (194)
Q Consensus        90 ~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~  169 (194)
                      ++++++.||+|||.|.|.+...   ...|.|+|||++..+++++||++.++++.+.          .  +.....||+|+
T Consensus        36 ~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~----------~--~~~~~~~~~L~  100 (126)
T cd08678          36 STQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELR----------K--NPSGRQIFPLQ  100 (126)
T ss_pred             EEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhc----------c--CCceeEEEEec
Confidence            4444455555555555555322   2479999999999989999999999998542          1  33457899998


Q ss_pred             CCCCCCccccCCCCcceeeeecCC
Q psy6105         170 ETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      +....  .....|.+.+.+.+.++
T Consensus       101 ~~~~~--~~~~~G~l~l~~~~~~~  122 (126)
T cd08678         101 GRPYE--GDSVSGSITVEFLFMEP  122 (126)
T ss_pred             CCCCC--CCCcceEEEEEEEEecc
Confidence            76431  22345666666666543

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.75  E-value=2.4e-17  Score=117.76  Aligned_cols=101  Identities=29%  Similarity=0.453  Sum_probs=79.9

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ....+++.+++|++|+.++..|.+||||+|++.+....              +                         ..
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~--------------~-------------------------~~   54 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF--------------P-------------------------DV   54 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcC--------------c-------------------------cc
Confidence            34679999999999999999999999999999865100              0                         01


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCC--CCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASN--VNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~--l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~  144 (194)
                      .+++|+++++++||+|||+|.|.+...+  .....|.|+|||++.++++++||++.++++++
T Consensus        55 ~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l  116 (133)
T cd04009          55 PTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI  116 (133)
T ss_pred             cccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHC
Confidence            2567777788888888888888775432  23468999999999999999999999999865

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.74  E-value=2.1e-17  Score=113.85  Aligned_cols=89  Identities=20%  Similarity=0.283  Sum_probs=64.1

Q ss_pred             EEEeeccCCCCCCCCCC----CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           9 FRADNYCRPTIGNRSIP----SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~----g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      +++++.+|++|++.|..    +.+||||+|+++..     +.+|+++++                               
T Consensus         3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~-----~~kT~v~~~-------------------------------   46 (108)
T cd04039           3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRR-----VFRTSWRRH-------------------------------   46 (108)
T ss_pred             EEEEEEeeeCCCCccccCCCCCccCceEEEEECCE-----eEeeeeecC-------------------------------
Confidence            78999999999988742    35899999887422     334444444                               


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~  144 (194)
                                ++||+|||.|.|.+..... ...|.|.|||++.++++++||++.++|+.+
T Consensus        47 ----------t~nPvWne~f~f~v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l   95 (108)
T cd04039          47 ----------TLNPVFNERLAFEVYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQEL   95 (108)
T ss_pred             ----------CCCCcccceEEEEEeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHH
Confidence                      4555555555555543332 248999999999999999999999999854

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.74  E-value=2.9e-17  Score=114.94  Aligned_cols=103  Identities=22%  Similarity=0.318  Sum_probs=75.1

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .++++++.|++|+.+|..+.+||||+|++...     ..+|++++++                                 
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~-----~~~T~~~~~t---------------------------------   43 (119)
T cd08377           2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNA-----RLQTHTIYKT---------------------------------   43 (119)
T ss_pred             EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCE-----eeecceecCC---------------------------------
Confidence            47899999999999999999999999988532     2344444444                                 


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                              .||.|+|+|.|.+..  + ...|.|+|||++..+++++||++.+++..+.              ....+||+
T Consensus        44 --------~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~--------------~~~~~~~~   98 (119)
T cd08377          44 --------LNPEWNKIFTFPIKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIK--------------NGERKWYA   98 (119)
T ss_pred             --------cCCccCcEEEEEecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCC--------------CCCceEEE
Confidence                    555555555554432  1 2478999999998889999999999997542              22358999


Q ss_pred             ccCCCC
Q psy6105         168 LMETVP  173 (194)
Q Consensus       168 L~~~~~  173 (194)
                      |.+...
T Consensus        99 l~~~~~  104 (119)
T cd08377          99 LKDKKL  104 (119)
T ss_pred             CcccCC
Confidence            987543

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.74  E-value=4.4e-17  Score=115.05  Aligned_cols=106  Identities=25%  Similarity=0.309  Sum_probs=78.5

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +|+.+++|++|+++|..|.+||||+++++..   ....+|+                                       
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~---------------------------------------   39 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDN---------------------------------------   39 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceee---------------------------------------
Confidence            6899999999999999999999999999643   1123333                                       


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP  161 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~  161 (194)
                        +++++.||+|||+|.|.+....  ...|.|+|||++.++++++||++.+++....- ..||..++..|...
T Consensus        40 --~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~  107 (124)
T cd04037          40 --YIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDLLGSDDLIGETVIDLEDRFF-SKHRATCGLPPTYE  107 (124)
T ss_pred             --EEECCCCCccceEEEEEecCCC--CCEEEEEEEECCCCCCCceeEEEEEeeccccc-chHHHhccCCCccc
Confidence              3444555555555555543221  24899999999999999999999999986543 67888887776554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.74  E-value=2.8e-17  Score=115.22  Aligned_cols=107  Identities=23%  Similarity=0.346  Sum_probs=76.2

Q ss_pred             eEEEeeccCCCCCCCCC------CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCC
Q psy6105           8 SFRADNYCRPTIGNRSI------PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG   81 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~------~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~   81 (194)
                      .+++.+++|++|+.+|.      .|.+||||+|+++..     ..+|+++++++||.|||.|.                 
T Consensus         2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~-----~~kT~~~~~t~~P~W~e~f~-----------------   59 (121)
T cd08391           2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ-----TFKSKVIKENLNPKWNEVYE-----------------   59 (121)
T ss_pred             eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE-----eEEccccCCCCCCcccceEE-----------------
Confidence            37899999999999885      368999999988642     45555555555555555544                 


Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP  161 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~  161 (194)
                                              |.+...  ....|.|+|||++.. ++++||++.+++..+.          .  +..
T Consensus        60 ------------------------~~v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~----------~--~~~  100 (121)
T cd08391          60 ------------------------AVVDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVE----------K--KGF  100 (121)
T ss_pred             ------------------------EEeCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhc----------c--cCc
Confidence                                    444321  124899999999888 8899999999997542          1  344


Q ss_pred             eEeEEEccCCCCCC
Q psy6105         162 VTQWYPLMETVPGQ  175 (194)
Q Consensus       162 ~~~W~~L~~~~~~~  175 (194)
                      ..+||+|.+...|.
T Consensus       101 ~~~w~~L~~~~~G~  114 (121)
T cd08391         101 IDEWLPLEDVKSGR  114 (121)
T ss_pred             cceEEECcCCCCce
Confidence            68999998764443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.73  E-value=7.7e-17  Score=114.11  Aligned_cols=101  Identities=19%  Similarity=0.275  Sum_probs=75.3

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.+++|++|.+.|..|.+||||++.+...     ..+|+++++|+||.|||.|.|                     
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~-----~~kT~v~~~t~nP~Wne~f~f---------------------   56 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE-----SVRSPVQKDTLSPEFDTQAIF---------------------   56 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCE-----EEEeCccCCCCCCcccceEEE---------------------
Confidence            358999999999999999999999999987643     455666666666666665553                     


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                                          .+...   ...|.|+|||++.+ ++++||++.+++...              .....+|+
T Consensus        57 --------------------~~~~~---~~~l~i~V~d~~~~-~d~~lG~~~~~l~~~--------------~~~~~~~~   98 (126)
T cd04046          57 --------------------YRKKP---RSPIKIQVWNSNLL-CDEFLGQATLSADPN--------------DSQTLRTL   98 (126)
T ss_pred             --------------------EecCC---CCEEEEEEEECCCC-CCCceEEEEEecccC--------------CCcCceEE
Confidence                                33221   24899999999887 489999999999754              23345889


Q ss_pred             EccCC
Q psy6105         167 PLMET  171 (194)
Q Consensus       167 ~L~~~  171 (194)
                      +|+..
T Consensus        99 ~l~~~  103 (126)
T cd04046          99 PLRKR  103 (126)
T ss_pred             EcccC
Confidence            99743

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.73  E-value=1.1e-16  Score=116.49  Aligned_cols=132  Identities=19%  Similarity=0.243  Sum_probs=86.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+.+...-+-+|++.+.++.+||||++++.-......+.+|+++++|+||+|||.|.|.+.           .     ..
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~-----------~-----~~   68 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNIN-----------R-----KH   68 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEec-----------c-----cc
Confidence            3444444444488888889999999999742222444666777777777777766665532           0     00


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-CCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      +                .|.   ..+....|.|+|||++.+ ++|++||++.++|+.+..            ...+..|+
T Consensus        69 ~----------------~~~---R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~------------~~~~~~~~  117 (155)
T cd08690          69 R----------------SFQ---RVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLET------------KCEIHESV  117 (155)
T ss_pred             c----------------hhh---hhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccc------------cCcceEEE
Confidence            0                010   022345899999999876 579999999999987642            33456799


Q ss_pred             EccCCCCCCccccCCCCcceeee
Q psy6105         167 PLMETVPGQIPLSHSSNLPSSLS  189 (194)
Q Consensus       167 ~L~~~~~~~~~~~~~~~~~~~~~  189 (194)
                      +|..   +.++.-|..++.+++.
T Consensus       118 ~L~~---~~k~~Gg~l~v~ir~r  137 (155)
T cd08690         118 DLMD---GRKATGGKLEVKVRLR  137 (155)
T ss_pred             Ehhh---CCCCcCCEEEEEEEec
Confidence            9863   5556667667666554

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.72  E-value=1.8e-16  Score=110.56  Aligned_cols=116  Identities=24%  Similarity=0.352  Sum_probs=78.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      ++++++..|++|+.+   |.+||||++++...    ...                                         
T Consensus         1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~~----~~~-----------------------------------------   32 (117)
T cd08383           1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQV----EVA-----------------------------------------   32 (117)
T ss_pred             CeEEEEEEecCCCcC---CCCCceEEEEECCE----EeE-----------------------------------------
Confidence            478899999999876   78999999988532    123                                         


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      +|+++++ .||.|||+|.|.+...++....|.|.+||.+...++.++|.+.|.....              +.....||+
T Consensus        33 kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~--------------~~~~~~w~~   97 (117)
T cd08383          33 RTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL--------------GQGKDEWFP   97 (117)
T ss_pred             ecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC--------------CCcceeEEE
Confidence            3444444 5556666666655544444457888899987777778888877766433              556789999


Q ss_pred             ccCCCCCCccccCCCCcceeee
Q psy6105         168 LMETVPGQIPLSHSSNLPSSLS  189 (194)
Q Consensus       168 L~~~~~~~~~~~~~~~~~~~~~  189 (194)
                      |.+...+..   ..|++.+.+.
T Consensus        98 L~~~~~~~~---~~G~l~l~~~  116 (117)
T cd08383          98 LTPVDPDSE---VQGSVRLRAR  116 (117)
T ss_pred             CccCCCCCC---cCceEEEEEE
Confidence            988764321   4455555554

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.72  E-value=3.6e-16  Score=110.54  Aligned_cols=108  Identities=21%  Similarity=0.282  Sum_probs=78.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|.+.+++|++|+.++..|.+||||++.+...  ...                                         .+
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~-----------------------------------------~~   38 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG--KRR-----------------------------------------IA   38 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCC--Cee-----------------------------------------ee
Confidence            36789999999999999999999999986532  112                                         33


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCC-CCceEeEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNP-RQPVTQWY  166 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p-~~~~~~W~  166 (194)
                      +|++++++.||.|||+|.|.+...  ....|.|+|||++.++++++||++.++++..          .... +.....|+
T Consensus        39 kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~----------~~~~~~~~~~~w~  106 (126)
T cd04043          39 KTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPK----------RFGDDGLPREIWL  106 (126)
T ss_pred             cccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHH----------HcCCCCCCceEEE
Confidence            555555556666666666665443  1247999999999888999999999999743          1111 34567899


Q ss_pred             EccC
Q psy6105         167 PLME  170 (194)
Q Consensus       167 ~L~~  170 (194)
                      +|.+
T Consensus       107 ~l~~  110 (126)
T cd04043         107 DLDT  110 (126)
T ss_pred             EcCC
Confidence            9975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1.1e-16  Score=112.03  Aligned_cols=101  Identities=19%  Similarity=0.249  Sum_probs=71.2

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|-+++..||+|++++   ..||||.|.++..     +.                                         
T Consensus         3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~-----k~-----------------------------------------   33 (127)
T cd08394           3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNV-----KS-----------------------------------------   33 (127)
T ss_pred             eEEEEEEEeeCCCCCC---CCCCeEEEEECCE-----Ee-----------------------------------------
Confidence            4778999999997655   4589999998643     33                                         


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      +|++.++ .||.|||+|.|.+..  .. ..|.|+|||++.+ .|++||++.|+|..+..          .......+||+
T Consensus        34 kT~v~~~-~nP~WnE~F~F~~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~----------~~~~~~~~Wy~   98 (127)
T cd08394          34 TTIAVRG-SQPCWEQDFMFEINR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQ----------SNEEGPGEWLT   98 (127)
T ss_pred             EeeECCC-CCCceeeEEEEEEcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHccc----------CCCCCCCccEe
Confidence            4444443 266666666666532  22 3599999999876 89999999999986532          22334479999


Q ss_pred             ccCCC
Q psy6105         168 LMETV  172 (194)
Q Consensus       168 L~~~~  172 (194)
                      |.+.-
T Consensus        99 L~~~~  103 (127)
T cd08394          99 LDSEV  103 (127)
T ss_pred             cChHH
Confidence            99763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.70  E-value=4.2e-16  Score=111.61  Aligned_cols=117  Identities=21%  Similarity=0.217  Sum_probs=82.4

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|-+..++|++|+ +|..|.+||||++++.+....       +...                       +..+   ..++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~-------~~~~-----------------------~~~~---~~~~   47 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRH-------IFPA-----------------------LPHH---GQEC   47 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcc-------cccc-----------------------cccc---ccee
Confidence            3668899999998 888899999999999875110       0000                       0000   1267


Q ss_pred             eceeecCCCCCcc-cceEEEEecCCCCCCceEEEEEEecCCCCC---CceeEEEEeCCCCCCcchhhHHHHhhCC-CCce
Q psy6105          88 RTSVKKNSLNPFY-NEALLFDVPASNVNDVSLIIKVIDYDRIGS---DELMGCTAIGSSFIGIGRDHWLEMLDNP-RQPV  162 (194)
Q Consensus        88 kT~~~~~t~nP~~-~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~---~~~iG~~~i~l~~~~~~~~~W~~~l~~p-~~~~  162 (194)
                      +|.++++++||+| ||+|.|.+...    ..|.|+|||++..+.   +++||++.+++.++-          ..+ ....
T Consensus        48 kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~----------~~~~~~~~  113 (137)
T cd08691          48 RTSIVENTINPVWHREQFVFVGLPT----DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLL----------ERHAIGDQ  113 (137)
T ss_pred             eeeeEcCCCCCceEceEEEEEcCCC----CEEEEEEEecCCCCCccCCceEEEEEEEHHHhc----------ccccCCce
Confidence            7888888888888 88888877532    379999999765433   799999999998542          221 2236


Q ss_pred             EeEEEccCCC
Q psy6105         163 TQWYPLMETV  172 (194)
Q Consensus       163 ~~W~~L~~~~  172 (194)
                      ..||+|....
T Consensus       114 ~~~~~l~k~~  123 (137)
T cd08691         114 ELSYTLGRRT  123 (137)
T ss_pred             EEEEECCcCC
Confidence            7899997554

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.70  E-value=4.3e-16  Score=111.12  Aligned_cols=104  Identities=18%  Similarity=0.254  Sum_probs=74.7

Q ss_pred             eeEEEeeccCCCCCCCCCC----------CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEE
Q psy6105           7 RSFRADNYCRPTIGNRSIP----------SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVY   76 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~----------g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~   76 (194)
                      -.+++.++.|++|.+.|..          |.+||||++.+...    ...+|+++                         
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~----~~~kT~~~-------------------------   54 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDT----HIGKTSTK-------------------------   54 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCE----EEeEEeEc-------------------------
Confidence            4689999999999998863          57888988888532    12344444                         


Q ss_pred             EEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhh
Q psy6105          77 LVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLD  156 (194)
Q Consensus        77 l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~  156 (194)
                                      +++.||.|||+|.|.+..    ...|.|.|||++.++++++||++.++|+.+.          .
T Consensus        55 ----------------~~t~~P~Wne~f~~~v~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~----------~  104 (132)
T cd04014          55 ----------------PKTNSPVWNEEFTTEVHN----GRNLELTVFHDAAIGPDDFVANCTISFEDLI----------Q  104 (132)
T ss_pred             ----------------CCCCCCCcceeEEEEcCC----CCEEEEEEEeCCCCCCCceEEEEEEEhHHhc----------c
Confidence                            445555555555555531    2478999999988889999999999998542          2


Q ss_pred             CCCCceEeEEEcc
Q psy6105         157 NPRQPVTQWYPLM  169 (194)
Q Consensus       157 ~p~~~~~~W~~L~  169 (194)
                      ..+.....|++|.
T Consensus       105 ~~~~~~~~w~~L~  117 (132)
T cd04014         105 RGSGSFDLWVDLE  117 (132)
T ss_pred             cCCCcccEEEEcc
Confidence            2245578999996

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.69  E-value=2.4e-16  Score=113.97  Aligned_cols=111  Identities=25%  Similarity=0.346  Sum_probs=76.5

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++.++.|++|+.+|. +.+||||+++++..     ..+|+++++++||.||                           
T Consensus         3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~-----~~kT~vvk~t~nP~Wn---------------------------   49 (145)
T cd04038           3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQ-----KVKTRVIKKNLNPVWN---------------------------   49 (145)
T ss_pred             EEEEEEEeeECCCCCCC-CCcCcEEEEEECCE-----EEEeeeEcCCCCCeec---------------------------
Confidence            47899999999999997 89999999998643     4455555555555555                           


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchh-hHHHHhhCCCCceEeEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRD-HWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~-~W~~~l~~p~~~~~~W~  166 (194)
                                    |+|.|.+...   ...|.|+|||++.++++++||.+.+++..+..... +|..-+ ..+..+.+|.
T Consensus        50 --------------E~f~f~i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~  111 (145)
T cd04038          50 --------------EELTLSVPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVL  111 (145)
T ss_pred             --------------ccEEEEecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEe
Confidence                          4444544322   24789999999999999999999999987644322 222222 2244566787


Q ss_pred             Ecc
Q psy6105         167 PLM  169 (194)
Q Consensus       167 ~L~  169 (194)
                      +-.
T Consensus       112 ~~~  114 (145)
T cd04038         112 PSV  114 (145)
T ss_pred             cCC
Confidence            753

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=4.7e-16  Score=109.89  Aligned_cols=91  Identities=23%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..++++++.|++|+ .+..|.+||||+|++...                                              +
T Consensus        28 ~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~----------------------------------------------~   60 (127)
T cd04032          28 ATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQ----------------------------------------------E   60 (127)
T ss_pred             EEEEEEEEECCCCC-cCcCCCCCeEEEEEECCc----------------------------------------------c
Confidence            46667777777775 355566677777666422                                              3


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG  145 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~  145 (194)
                      ++|++++++.||+|||+|.|...... ....|.|+|||++.++++++||++.+++.+..
T Consensus        61 ~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          61 KRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             ccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence            45555555566666666655421111 23589999999999999999999999998653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.7e-16  Score=110.38  Aligned_cols=105  Identities=25%  Similarity=0.379  Sum_probs=77.5

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++.+.+|++|+..|..|.+||||++.+...    ...+|.+++++.||.|||.                         
T Consensus         2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~----~~~kT~~~~~t~~P~Wne~-------------------------   52 (120)
T cd04045           2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI----VKGRTVTISNTLNPVWDEV-------------------------   52 (120)
T ss_pred             eEEEEEEeeECCCCccCCCCcCCEEEEEECCE----EeeceeEECCCcCCccCce-------------------------
Confidence            47899999999999999999999999998421    2345555555555555544                         


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                                      |.|.+...   ...|.|+|||++.++++++||++.+++.++          +   +...+.||.
T Consensus        53 ----------------f~~~v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l----------~---~~~~~~~~~  100 (120)
T cd04045          53 ----------------LYVPVTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDL----------I---KKNEDGKYV  100 (120)
T ss_pred             ----------------EEEEecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHh----------h---CCCCCceEE
Confidence                            44444322   138999999999999999999999999744          3   225689999


Q ss_pred             ccCCCC
Q psy6105         168 LMETVP  173 (194)
Q Consensus       168 L~~~~~  173 (194)
                      |....+
T Consensus       101 ~~~~~~  106 (120)
T cd04045         101 EYDDEE  106 (120)
T ss_pred             ecCCCc
Confidence            988763

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.68  E-value=4.5e-16  Score=109.80  Aligned_cols=106  Identities=20%  Similarity=0.318  Sum_probs=76.8

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecC-CCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKN-SLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~-t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      .|++.+++|++|+..+..+.+||||+|.+...     ..+|+++++ ++||.|||.|.                      
T Consensus         2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~t~nP~Wne~f~----------------------   54 (124)
T cd04049           2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQ-----ERKSKVAKGDGRNPEWNEKFK----------------------   54 (124)
T ss_pred             eEEEEEEecCCCCCCCCCCCcCceEEEEECCE-----eeeeeEcCCCCCCCcccceEE----------------------
Confidence            47899999999999999999999999998532     344444442 45555555554                      


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                                         |.+..... ....|.|.|||++.++++++||++.+++.++          +.  +.....|
T Consensus        55 -------------------f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l----------~~--~~~~~~~  103 (124)
T cd04049          55 -------------------FTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL----------FE--EGVEPGT  103 (124)
T ss_pred             -------------------EEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHh----------hh--CCCCcCc
Confidence                               44433211 1247899999999988999999999999743          32  3456899


Q ss_pred             EEccCC
Q psy6105         166 YPLMET  171 (194)
Q Consensus       166 ~~L~~~  171 (194)
                      +.|.+.
T Consensus       104 ~~l~p~  109 (124)
T cd04049         104 AELVPA  109 (124)
T ss_pred             eEeecc
Confidence            999885

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.68  E-value=4.9e-16  Score=109.74  Aligned_cols=109  Identities=20%  Similarity=0.230  Sum_probs=79.6

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +++.+++|++|+..+..+.+||||+|++.+.    .+                                         ++
T Consensus         2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~----~~-----------------------------------------~~   36 (125)
T cd04051           2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPS----HK-----------------------------------------QS   36 (125)
T ss_pred             EEEEEEEcccCCCCCcccCCceEEEEEECCC----cc-----------------------------------------cc
Confidence            7899999999999999999999999999752    12                                         34


Q ss_pred             ceeec-CCCCCcccceEEEEecCCCC--CCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCC---Cce
Q psy6105          89 TSVKK-NSLNPFYNEALLFDVPASNV--NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPR---QPV  162 (194)
Q Consensus        89 T~~~~-~t~nP~~~e~f~f~v~~~~l--~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~---~~~  162 (194)
                      |.+.. ++.||.|||.|.|.+....+  ....|.++|||++.++++++||++.+++.++          +....   ...
T Consensus        37 T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l----------~~~~~~~~~~~  106 (125)
T cd04051          37 TPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL----------LDGASPAGELR  106 (125)
T ss_pred             cccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHh----------hcccCCCCcce
Confidence            44432 35666666666666654421  2358999999999888999999999999854          33322   135


Q ss_pred             EeEEEccCCC
Q psy6105         163 TQWYPLMETV  172 (194)
Q Consensus       163 ~~W~~L~~~~  172 (194)
                      ..||+|....
T Consensus       107 ~~~~~l~~~~  116 (125)
T cd04051         107 FLSYQLRRPS  116 (125)
T ss_pred             eEEEEeECCC
Confidence            7899998643

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.68  E-value=5e-16  Score=108.97  Aligned_cols=103  Identities=24%  Similarity=0.333  Sum_probs=74.1

Q ss_pred             eccCCCCCCCCCCCCCCcEEEEEEEcCC--eEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeece
Q psy6105          13 NYCRPTIGNRSIPSVADPYVKVYLVCEG--KRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTS   90 (194)
Q Consensus        13 ~~~a~~l~~~d~~g~~dpyv~v~l~~~~--~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~   90 (194)
                      .++|++|+.+|..|.+||||+|++.+..  +...                                         .++|+
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~-----------------------------------------~~kT~   44 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVE-----------------------------------------IGRTE   44 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEE-----------------------------------------eccEe
Confidence            3788999999999999999999998762  1222                                         45555


Q ss_pred             eecCCCCCcccceEEEEecCCCCCCceEEEEEEecCC----CCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          91 VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR----IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        91 ~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      +++++.||+|+|+|.|.+..+..  ..|.|+|||++.    ++++++||++.+++..+          +.  +.....|+
T Consensus        45 vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l----------~~--~~~~~~~~  110 (120)
T cd04048          45 VIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI----------VS--SPGQKLTL  110 (120)
T ss_pred             EeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH----------hc--CCCcEEEE
Confidence            66666666666666665433222  379999999987    78999999999999843          32  34456789


Q ss_pred             EccC
Q psy6105         167 PLME  170 (194)
Q Consensus       167 ~L~~  170 (194)
                      +|.+
T Consensus       111 ~l~~  114 (120)
T cd04048         111 PLKG  114 (120)
T ss_pred             EccC
Confidence            8843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.67  E-value=1.1e-15  Score=106.28  Aligned_cols=104  Identities=29%  Similarity=0.421  Sum_probs=77.8

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +++.+++|++|+..+..|.+||||+|.+.+.    ...                                         +
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~----~~~-----------------------------------------~   35 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGE----KVF-----------------------------------------K   35 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCC----cce-----------------------------------------e
Confidence            5788999999999999899999999998532    123                                         4


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                      |+++.++.+|.|||+|.|.+...  ....|.|+|||++..+++++||++.+++..+..            +.....|.+|
T Consensus        36 T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~------------~~~~~~~~~L  101 (115)
T cd04040          36 TKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEP------------EETTELTLPL  101 (115)
T ss_pred             eceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCC------------CCcEEEEEEC
Confidence            44445555666666666655432  234899999999998899999999999975431            4567899999


Q ss_pred             cCC
Q psy6105         169 MET  171 (194)
Q Consensus       169 ~~~  171 (194)
                      .+.
T Consensus       102 ~~~  104 (115)
T cd04040         102 DGQ  104 (115)
T ss_pred             cCC
Confidence            764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1011|consensus

Probab=99.67  E-value=2.9e-16  Score=132.99  Aligned_cols=90  Identities=26%  Similarity=0.352  Sum_probs=71.3

Q ss_pred             CCceeEEEEEcC--CeEeEEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCCCC
Q psy6105          69 ANPYVKVYLVCE--GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG  145 (194)
Q Consensus        69 ~dpyv~v~l~~~--~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~  145 (194)
                      --|||+|.+.+.  +.+.++..|+.+.++..|.|||+|.|-+..+.- ....|.+.|.|+-..+.|..+|...+.|.++.
T Consensus      1145 FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va 1224 (1283)
T KOG1011|consen 1145 FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA 1224 (1283)
T ss_pred             cccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh
Confidence            478999999743  335667778888999999999999998876543 34578899999887788999999999998653


Q ss_pred             cchhhHHHHhhCCCCceEeEEEccC
Q psy6105         146 IGRDHWLEMLDNPRQPVTQWYPLME  170 (194)
Q Consensus       146 ~~~~~W~~~l~~p~~~~~~W~~L~~  170 (194)
                      .            ....+.|++|.-
T Consensus      1225 ~------------kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1225 D------------KGSCACWVPLGR 1237 (1283)
T ss_pred             h------------cCceeEeeeccc
Confidence            1            456789999954

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.65  E-value=1.6e-15  Score=106.86  Aligned_cols=98  Identities=22%  Similarity=0.354  Sum_probs=75.1

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.++.|++|++.+..+.+||||++.+.+......                                         .
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~-----------------------------------------~   53 (123)
T cd04035          15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKAT-----------------------------------------K   53 (123)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCC-----------------------------------------c
Confidence            46899999999999999999999999999976521111                                         4


Q ss_pred             eeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc
Q psy6105          87 KRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI  146 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~  146 (194)
                      ++|++++++.||+|||+|.|. +....+....|.|+|||++.+ .+++||++.++++++..
T Consensus        54 ~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~  113 (123)
T cd04035          54 LRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKP  113 (123)
T ss_pred             eeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCC
Confidence            566666666777777777774 333334445899999999888 88999999999997743

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.64  E-value=3e-15  Score=105.37  Aligned_cols=120  Identities=22%  Similarity=0.237  Sum_probs=80.0

Q ss_pred             eEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           8 SFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      .+++.+++|++|+..+ ..|.+||||++.+...   ....+|+++++                                 
T Consensus         3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~---------------------------------   46 (124)
T cd04044           3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKD---------------------------------   46 (124)
T ss_pred             EEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecC---------------------------------
Confidence            4789999999999766 4567899999998752   12344444444                                 


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE-eE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT-QW  165 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~-~W  165 (194)
                              +.||.|||.|.|.+..   ....|.|+|||++..+++++||++.+++.++..          .  .... .|
T Consensus        47 --------~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~----------~--~~~~~~~  103 (124)
T cd04044          47 --------TSNPVWNETKYILVNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQ----------N--PEQENLT  103 (124)
T ss_pred             --------CCCCcceEEEEEEeCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhcc----------C--ccccCcc
Confidence                    4555555555554431   124899999999988899999999999985432          1  1222 34


Q ss_pred             EEccCCCCCCccccCCCCcceeeeecC
Q psy6105         166 YPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       166 ~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      +.|..   +.+   ..|.+.+++.|+|
T Consensus       104 ~~~~~---~~k---~~G~i~~~l~~~p  124 (124)
T cd04044         104 KNLLR---NGK---PVGELNYDLRFFP  124 (124)
T ss_pred             hhhhc---CCc---cceEEEEEEEeCC
Confidence            55532   222   2378888888876

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.63  E-value=5.8e-15  Score=106.42  Aligned_cols=123  Identities=16%  Similarity=0.195  Sum_probs=83.3

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      -+.+|++.++.|++|++++     +|||.|.|...    ...+|+++.++.||+|+|.|.|                   
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~----~vaRT~v~~~~~nP~W~E~F~f-------------------   60 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKT----LYARTTSKLKTDTLFWGEHFEF-------------------   60 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC-----CceEEEEECCE----EEEEEEEEcCCCCCcceeeEEe-------------------
Confidence            4578999999999999876     69999998754    2346666666555555555554                   


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecC-CC---CCCceeEEEEeCCCCCCcchhhHHHHhhCCCC
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYD-RI---GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQ  160 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~-~~---~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~  160 (194)
                                            ..... .  ..|.|.|+..+ ..   .++++||.+.|++..+.            .+.
T Consensus        61 ----------------------~~~~~-~--~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~------------~~~  103 (146)
T cd04013          61 ----------------------SNLPP-V--SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVS------------SRQ  103 (146)
T ss_pred             ----------------------cCCCc-c--cEEEEEEEEccCccccccCCcEEEEEEEEHHHhc------------CCC
Confidence                                  32111 1  25777776433 22   26789999999997442            378


Q ss_pred             ceEeEEEccCCCCCCc-----cccCCCCcceeeeecC
Q psy6105         161 PVTQWYPLMETVPGQI-----PLSHSSNLPSSLSCLN  192 (194)
Q Consensus       161 ~~~~W~~L~~~~~~~~-----~~~~~~~~~~~~~~~~  192 (194)
                      .+++||+|.+...+..     .....+.+.+++.|.+
T Consensus       104 ~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013         104 FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence            8999999998775531     1335567888877754

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>KOG1028|consensus

Probab=99.61  E-value=2.6e-15  Score=125.79  Aligned_cols=109  Identities=28%  Similarity=0.487  Sum_probs=92.5

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      +||||++++.+..  ..+.+|++.++++||+|||+|.|.++..++....|.++|||+|.|+++++||++.++|.....  
T Consensus       188 sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~--  263 (421)
T KOG1028|consen  188 SDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDL--  263 (421)
T ss_pred             CCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccc--
Confidence            7999999998664  468899999999999999999999988888889999999999999999999999999876531  


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                                ......|+.|++........ + |++-++|.|+|.
T Consensus       264 ----------~~~~~~w~~l~~~~~~~~~~-~-gel~~sL~Y~p~  296 (421)
T KOG1028|consen  264 ----------LSTTLFWKDLQPSSTDSEEL-A-GELLLSLCYLPT  296 (421)
T ss_pred             ----------cccceeeeccccccCCcccc-c-ceEEEEEEeecC
Confidence                      33367899999975444322 2 899999999985

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.60  E-value=1.9e-15  Score=104.41  Aligned_cols=92  Identities=22%  Similarity=0.388  Sum_probs=63.4

Q ss_pred             eccCCCCCCCCCCCCCCcEEEEEEEcCC-eEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeecee
Q psy6105          13 NYCRPTIGNRSIPSVADPYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSV   91 (194)
Q Consensus        13 ~~~a~~l~~~d~~g~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~~   91 (194)
                      .++|++|+.+|..|.+||||+|++.+.. ......+|.++++++||.|| .|.|.+.                       
T Consensus         6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~-----------------------   61 (110)
T cd04047           6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ-----------------------   61 (110)
T ss_pred             EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH-----------------------
Confidence            4688999999999999999999988652 22234555555555555555 3332210                       


Q ss_pred             ecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105          92 KKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        92 ~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~  144 (194)
                                     .+...+. ...|.|+|||++.++++++||++.++++.+
T Consensus        62 ---------------~l~~~~~-~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l   98 (110)
T cd04047          62 ---------------KLCNGDY-DRPIKIEVYDYDSSGKHDLIGEFETTLDEL   98 (110)
T ss_pred             ---------------HhcCCCc-CCEEEEEEEEeCCCCCCcEEEEEEEEHHHH
Confidence                           0111111 248999999999999999999999999854

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.60  E-value=1.1e-14  Score=100.85  Aligned_cols=84  Identities=20%  Similarity=0.267  Sum_probs=59.8

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      |.+.++.|++|+     |.+||||++.+.+.++...                                         +++
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~-----------------------------------------~~K   34 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVK-----------------------------------------KAK   34 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccce-----------------------------------------eee
Confidence            467888999994     5689999998876522122                                         455


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEec-------CCCCCCceeEEEEeCCC
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDY-------DRIGSDELMGCTAIGSS  142 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~-------~~~~~~~~iG~~~i~l~  142 (194)
                      |+++++++||+|||+|.|.+..    ...|.+.|||+       |..++|++||...+.|+
T Consensus        35 Tk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          35 TRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             eeeecCCCCCccceEEEEEeCC----CCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence            5556666666666666666642    24899999997       56688999988888886

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.59  E-value=1.6e-14  Score=102.35  Aligned_cols=117  Identities=22%  Similarity=0.277  Sum_probs=83.7

Q ss_pred             eEEEeeccCCCCCCC--CCCCC--CCcEEEEEEEcCCeEeEEEeeEEecCCCC--ceeeeeEEEecCCCceeEEEEEcCC
Q psy6105           8 SFRADNYCRPTIGNR--SIPSV--ADPYVKVYLVCEGKRIRKKRTSVKKNSLN--PFYNEALLFDVPANPYVKVYLVCEG   81 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~--d~~g~--~dpyv~v~l~~~~~~~~~~~T~~~~~t~n--P~w~e~f~f~~~~dpyv~v~l~~~~   81 (194)
                      .+|+.++-|++++..  +..|.  +||||++.|.+.  ...+++|.+..+++|  |.||+.|.|.+.--|--...+    
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~----   74 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIV----   74 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeE----
Confidence            389999999996654  44774  999999999986  566899999999999  999999999865111000000    


Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI  146 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~  146 (194)
                         ..++.        -.|.    + -..+.+....|.|+|||.|.+++|++||.+.++|..+.+
T Consensus        75 ---~~~~~--------~~~~----~-~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~  123 (133)
T cd08374          75 ---VIKKE--------HFWS----L-DETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR  123 (133)
T ss_pred             ---EEeec--------cccc----c-CcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence               01111        0111    0 001334456999999999999999999999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.59  E-value=1.9e-14  Score=101.72  Aligned_cols=105  Identities=26%  Similarity=0.257  Sum_probs=70.3

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++.+.+|+.+ ..+..+.+||||+|++...    ...+|+++++|                                 
T Consensus         3 ~L~V~i~~a~l~-~~~~~~~~dPyv~v~~~~~----~~~kT~v~~~t---------------------------------   44 (125)
T cd04021           3 QLQITVESAKLK-SNSKSFKPDPYVEVTVDGQ----PPKKTEVSKKT---------------------------------   44 (125)
T ss_pred             eEEEEEEeeECC-CCCcCCCCCeEEEEEECCc----ccEEeeeeCCC---------------------------------
Confidence            578899999844 4445788999999988532    23444444444                                 


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc---eEe
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP---VTQ  164 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~---~~~  164 (194)
                              .+|+|||+|.|.+..    ...|.|+|||++..+.+++||++.++++.+          +..+...   +..
T Consensus        45 --------~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l----------~~~~~~~~~~~~~  102 (125)
T cd04021          45 --------SNPKWNEHFTVLVTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDI----------LKNHNGKLENVKL  102 (125)
T ss_pred             --------CCCccccEEEEEeCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHh----------HhhcCCCccceEE
Confidence                    455555555554432    137999999999999999999999999754          3222222   345


Q ss_pred             EEEccCCC
Q psy6105         165 WYPLMETV  172 (194)
Q Consensus       165 W~~L~~~~  172 (194)
                      |++|....
T Consensus       103 ~~~~~~~~  110 (125)
T cd04021         103 TLNLSSEN  110 (125)
T ss_pred             EEEEEccC
Confidence            99997544

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.57  E-value=2.6e-14  Score=98.90  Aligned_cols=98  Identities=24%  Similarity=0.343  Sum_probs=74.7

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      +||||++.+.+.    ..++|++++++.||+|||.|.|.+...  ....|.|.|+|++.+ ++++||++.++|..+    
T Consensus        13 ~dPYv~v~v~~~----~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l----   81 (111)
T cd04052          13 LSPYAELYLNGK----LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDL----   81 (111)
T ss_pred             CCceEEEEECCE----EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHH----
Confidence            699999999432    357888888999999999999988543  335799999999988 899999999999743    


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                            +.. .....+||+|.+.        ..|.+.+++.+.|
T Consensus        82 ------~~~-~~~~~~w~~L~~~--------~~G~i~~~~~~~p  110 (111)
T cd04052          82 ------IDA-TSVGQQWFPLSGN--------GQGRIRISALWKP  110 (111)
T ss_pred             ------Hhh-hhccceeEECCCC--------CCCEEEEEEEEec
Confidence                  322 3345799999762        2345565566655

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.57  E-value=7e-14  Score=98.85  Aligned_cols=109  Identities=24%  Similarity=0.290  Sum_probs=82.0

Q ss_pred             eeEEEeeccCCCCCCCC--CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           7 RSFRADNYCRPTIGNRS--IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d--~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      +.+++++++|++|+.++  ..+..||||++++.....     +                                   ..
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~-----~-----------------------------------~~   41 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPA-----D-----------------------------------DS   41 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCC-----C-----------------------------------CC
Confidence            46899999999999988  578899999999975410     0                                   01


Q ss_pred             EEeeceeecCCC-CCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          85 RKKRTSVKKNSL-NPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        85 ~~~kT~~~~~t~-nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                      .+++|++++++. ||+|||+|.|.+...+.  ..|.++|||++.. ++++||++.++++.+..               ..
T Consensus        42 ~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~--~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~---------------g~  103 (128)
T cd00275          42 AKFKTKVVKNNGFNPVWNETFEFDVTVPEL--AFLRFVVYDEDSG-DDDFLGQACLPLDSLRQ---------------GY  103 (128)
T ss_pred             CcEeeeeecCCCcCCccCCcEEEEEeCCCe--EEEEEEEEeCCCC-CCcEeEEEEEEhHHhcC---------------ce
Confidence            256777766554 88888888888764432  4789999999888 89999999999985531               14


Q ss_pred             eEEEccCCCC
Q psy6105         164 QWYPLMETVP  173 (194)
Q Consensus       164 ~W~~L~~~~~  173 (194)
                      +|++|.....
T Consensus       104 ~~~~l~~~~~  113 (128)
T cd00275         104 RHVPLLDSKG  113 (128)
T ss_pred             EEEEecCCCC
Confidence            6888876543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03008 Phospholipase D delta

Probab=99.49  E-value=1.2e-13  Score=121.40  Aligned_cols=103  Identities=22%  Similarity=0.368  Sum_probs=87.5

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      +||||+|.+...    +..+|++++++.||+|||+|.|.+...   ...|+++|+|+|.++ +++||++.|++..+.   
T Consensus        77 SDPYV~I~Lg~~----rv~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~---  145 (868)
T PLN03008         77 SDPYVTVVVPQA----TLARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIA---  145 (868)
T ss_pred             CCceEEEEECCc----ceeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcC---
Confidence            899999999432    366999999999999999999998653   248999999999996 589999999998663   


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                               ++..+.+|++|....  .+|..+.+.+.+++.|.|.
T Consensus       146 ---------~Ge~vd~Wl~Ll~~~--~kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        146 ---------SGERISGWFPVLGAS--GKPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             ---------CCCceEEEEEccccC--CCCCCCCcEEEEEEEEEEc
Confidence                     377889999999865  4788889999999988775

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.46  E-value=2.6e-13  Score=88.53  Aligned_cols=85  Identities=31%  Similarity=0.466  Sum_probs=66.3

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      |++.+++|++|+..+..+..||||++.+.....  .                                         .++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~-----------------------------------------~~~   37 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--T-----------------------------------------KYK   37 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--E-----------------------------------------EEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee--e-----------------------------------------eee
Confidence            678999999999999899999999999987511  1                                         345


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEE
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTA  138 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~  138 (194)
                      |.+++++.+|.|+|+|.|.+......  .|.|+|||++.++++++||++.
T Consensus        38 T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   38 TKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             ECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred             eeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence            55666666677777677765555443  4999999999998899999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.43  E-value=4e-13  Score=127.57  Aligned_cols=102  Identities=15%  Similarity=0.154  Sum_probs=74.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++++.+|+||.  +..|.+||||++.++.+    .                                         ++
T Consensus      1981 ~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~----~-----------------------------------------~~ 2013 (2102)
T PLN03200       1981 SLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG----P-----------------------------------------PR 2013 (2102)
T ss_pred             ceEEEEeeccccc--cccCCCCCeEEEEECCC----C-----------------------------------------cc
Confidence            4788999999997  44688999999998843    1                                         33


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      ||++++++.||+|||.|+|.+..+... ..|.|+|||+|.+++ +.||.+.|++...          +  .+..+..||+
T Consensus      2014 kTkvvk~~~nP~Wne~f~~~~~~p~~~-~~l~iev~d~d~f~k-d~~G~~~i~l~~v----------v--~~~~~~~~~~ 2079 (2102)
T PLN03200       2014 QTKVVSHSSSPEWKEGFTWAFDSPPKG-QKLHISCKSKNTFGK-SSLGKVTIQIDRV----------V--MEGTYSGEYS 2079 (2102)
T ss_pred             cccccCCCCCCCcccceeeeecCCCCC-CceEEEEEecCccCC-CCCceEEEEHHHH----------h--cCceeeeeee
Confidence            555555555566666555544333322 379999999999955 5999999999854          2  2678899999


Q ss_pred             ccC
Q psy6105         168 LME  170 (194)
Q Consensus       168 L~~  170 (194)
                      |.+
T Consensus      2080 L~~ 2082 (2102)
T PLN03200       2080 LNP 2082 (2102)
T ss_pred             cCc
Confidence            986

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.39  E-value=3.2e-12  Score=114.63  Aligned_cols=99  Identities=25%  Similarity=0.344  Sum_probs=74.4

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      +||||++.+.+.    ..++|+++++++||+|||.+..++.....  ..+.|.|+|+|...+++.||.+.++|..+..+.
T Consensus      1061 sDpfv~~~ln~k----~vyktkv~KktlNPvwNEe~~i~v~~r~~--D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038        1061 SDPFVKLFLNEK----SVYKTKVVKKTLNPVWNEEFTIEVLNRVK--DVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred             CCceEEEEecce----ecccccchhccCCCCccccceEeeecccc--ceEEEEEeecccCCCccccccccccHhhcCcCC
Confidence            899999998544    38999999999999999999998875543  489999999999999999999999999876543


Q ss_pred             -hhHHHHhhCC-----CCceEeEEEccCCCC
Q psy6105         149 -DHWLEMLDNP-----RQPVTQWYPLMETVP  173 (194)
Q Consensus       149 -~~W~~~l~~p-----~~~~~~W~~L~~~~~  173 (194)
                       ..|.-.+..+     +....-|+.+.+.-.
T Consensus      1135 ~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~~ 1165 (1227)
T COG5038        1135 TTNSNIPLDGKTFIVLDGTLHPGFNFRSKYA 1165 (1227)
T ss_pred             ccceeeeccCcceEecccEeecceecchhhh
Confidence             2333222221     233445666655543

>KOG1328|consensus

Probab=99.33  E-value=6e-13  Score=114.21  Aligned_cols=98  Identities=21%  Similarity=0.369  Sum_probs=82.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      ++-+.++.|+++.+.|.+|.+||||.|.++|.                       |.|.           .     ...+
T Consensus       948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~-----------------------~~fp-----------~-----v~~q  988 (1103)
T KOG1328|consen  948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPK-----------------------FRFP-----------A-----VPVQ  988 (1103)
T ss_pred             chhhhhhccccccccCCCCCCCCeEEEEeccc-----------------------cccc-----------c-----chhh
Confidence            34467899999999999999999999999985                       1111           0     1267


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCC--CceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVN--DVSLIIKVIDYDRIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~--~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~  144 (194)
                      +|+++++|+||+|+|+|.|.|+++...  .+.|.++|.|+|-++.++|-|++.+.|+.+
T Consensus       989 ~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen  989 KTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             hhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCC
Confidence            889999999999999999998887543  568999999999999999999999999875

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.27  E-value=5.8e-11  Score=79.25  Aligned_cols=95  Identities=35%  Similarity=0.507  Sum_probs=71.8

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +++.+++|++|...+..+..+|||++.+.+..  .                                         ..++
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~-----------------------------------------~~~~   38 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--K-----------------------------------------EKKK   38 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--c-----------------------------------------ceEe
Confidence            67888999999888766778899998887651  0                                         1456


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      |+++.++.+|.|||.|.|.+....  ...|.|+|||.+..+.+.++|.+.+++..+..+.
T Consensus        39 T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       39 TKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             eeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence            666666667888887777765543  3589999999888778899999999987665433

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1326|consensus

Probab=99.26  E-value=4.5e-12  Score=111.93  Aligned_cols=58  Identities=22%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      --|+.+..|-+|.+.|.+|.+||||+|.++..   ....+...+.+|+||+|++.|.+...
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~---~~~d~~~yip~tlnPVfgkmfel~~~  671 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK---RTLDRAHYIPNTLNPVFGKMFELECL  671 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeeccc---hhhhhhhcCcCCCCcHHHHHHHhhcc
Confidence            35799999999999999999999999999864   33478899999999999999988655

>PLN02223 phosphoinositide phospholipase C

Probab=99.26  E-value=1.3e-11  Score=104.57  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=68.8

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .||||+|.+.+......+++|.+..++.||+|||+|.|.+..+++  +.|.|.|+|+|..+.+++||+..+++..+..|+
T Consensus       435 ~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy  512 (537)
T PLN02223        435 PDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEVYDYEVSTADAFCGQTCLPVSELIEGI  512 (537)
T ss_pred             CCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEEEecCCCCCCcEEEEEecchHHhcCCc
Confidence            689999999876555566778877889999999999999987776  589999999999889999999999999887666


Q ss_pred             hh
Q psy6105         149 DH  150 (194)
Q Consensus       149 ~~  150 (194)
                      .|
T Consensus       513 R~  514 (537)
T PLN02223        513 RA  514 (537)
T ss_pred             ee
Confidence            44

>cd00030 C2 C2 domain

Probab=99.25  E-value=7.3e-11  Score=78.43  Aligned_cols=102  Identities=31%  Similarity=0.472  Sum_probs=68.0

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKR   88 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~k   88 (194)
                      +.+.+++|++|......+..+|||.+.+...    ...+|.++.++                                  
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~----~~~~T~~~~~~----------------------------------   42 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK----QKFKTKVVKNT----------------------------------   42 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC----ceEecceeCCC----------------------------------
Confidence            3567788888877666777888888887641    13444444444                                  


Q ss_pred             ceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          89 TSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        89 T~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                             .||.|+|.|.|.+...  ....|.|+|++++..+.+.+||.+.+++..+.           .......+|++|
T Consensus        43 -------~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~-----------~~~~~~~~~~~l  102 (102)
T cd00030          43 -------LNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL-----------DSGKEGELWLPL  102 (102)
T ss_pred             -------CCCcccceEEEEccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh-----------hcCCcCcceecC
Confidence                   4555555555544331  22489999999888877899999999997553           235556677765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1328|consensus

Probab=99.24  E-value=1.4e-12  Score=112.04  Aligned_cols=145  Identities=19%  Similarity=0.288  Sum_probs=92.8

Q ss_pred             eeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEE-EeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEeece
Q psy6105          12 DNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRK-KRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTS   90 (194)
Q Consensus        12 ~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~-~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~kT~   90 (194)
                      -.+-|++|.++|.+|.+|||+++.+.|...+... .--+-.+..+.-.|..+               ++-+ -+..+-|+
T Consensus       119 s~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~---------------GpiP-AKlIkats  182 (1103)
T KOG1328|consen  119 SLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDT---------------GPIP-AKLIKATS  182 (1103)
T ss_pred             HHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccC---------------CCCc-HHHhhhcc
Confidence            3567899999999999999999999886211110 00011111111110000               0000 01245688


Q ss_pred             eecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC------------------------------------CCcee
Q psy6105          91 VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG------------------------------------SDELM  134 (194)
Q Consensus        91 ~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~------------------------------------~~~~i  134 (194)
                      +++.|+||.|+|.|.|.|  +++....+.+.|||+|.-.                                    .|+|+
T Consensus       183 vk~~TLnPkW~EkF~F~I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFL  260 (1103)
T KOG1328|consen  183 VKKKTLNPKWSEKFQFTI--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFL  260 (1103)
T ss_pred             cccccCCcchhhheeeeh--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccc
Confidence            899999999999999998  5666679999999987422                                    38999


Q ss_pred             EEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceee
Q psy6105         135 GCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL  188 (194)
Q Consensus       135 G~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~  188 (194)
                      |.+.|++.++.             -..+.+||+|++++... ..+|.-+|-.++
T Consensus       261 GciNipl~EiP-------------~~Gld~WFkLepRS~~S-~VqG~~~LklwL  300 (1103)
T KOG1328|consen  261 GCINIPLAEIP-------------PDGLDQWFKLEPRSDKS-KVQGQVKLKLWL  300 (1103)
T ss_pred             cccccchhcCC-------------cchHHHHhccCcccccc-cccceEEEEEEE
Confidence            99999999885             44556677887765433 233444444444

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.18  E-value=4.2e-11  Score=103.25  Aligned_cols=80  Identities=19%  Similarity=0.284  Sum_probs=70.5

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .||||+|.+.+.+....+++|++..++.||+|||+|.|.+..+++  +.|.|.|+|+|..+.++|||+.+|++..+.+|+
T Consensus       496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy  573 (598)
T PLN02230        496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI  573 (598)
T ss_pred             CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc
Confidence            599999999876655567788888899999999999999887776  589999999999889999999999999988777


Q ss_pred             hh
Q psy6105         149 DH  150 (194)
Q Consensus       149 ~~  150 (194)
                      .|
T Consensus       574 R~  575 (598)
T PLN02230        574 HA  575 (598)
T ss_pred             ce
Confidence            66

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.16  E-value=8.7e-11  Score=101.12  Aligned_cols=80  Identities=19%  Similarity=0.252  Sum_probs=70.2

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .||||+|.+.+.+....+++|+++.++.||+|||+|.|.+..+++  +.|.+.|+|+|..+.+++||+..|++..+..|+
T Consensus       479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy  556 (581)
T PLN02222        479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI  556 (581)
T ss_pred             CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc
Confidence            689999999865555567789999999999999999999877776  589999999998888999999999999988777


Q ss_pred             hh
Q psy6105         149 DH  150 (194)
Q Consensus       149 ~~  150 (194)
                      .|
T Consensus       557 R~  558 (581)
T PLN02222        557 RA  558 (581)
T ss_pred             ce
Confidence            66

>PLN02952 phosphoinositide phospholipase C

Probab=99.16  E-value=8.6e-11  Score=101.48  Aligned_cols=90  Identities=26%  Similarity=0.365  Sum_probs=75.0

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .||||+|.+.+.+....+++|+++.++.||+|||+|.|.+..+++  +.|.|.|+|+|..+.++++|+..|++..+..|+
T Consensus       497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy  574 (599)
T PLN02952        497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI  574 (599)
T ss_pred             CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc
Confidence            589999999876555667899999999999999999999887766  589999999999889999999999999875433


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCC
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQ  175 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~  175 (194)
                                     +|.+|.+.....
T Consensus       575 ---------------R~VpL~~~~G~~  586 (599)
T PLN02952        575 ---------------RSVPLHDKKGEK  586 (599)
T ss_pred             ---------------eeEeCcCCCCCC
Confidence                           478887655433

>KOG0169|consensus

Probab=99.14  E-value=5.1e-11  Score=103.26  Aligned_cols=135  Identities=25%  Similarity=0.384  Sum_probs=94.7

Q ss_pred             eEEEeeccCCCCCCCCC---CCCCCcEEEEEEEcCCeEeEEEeeEEecCC-CCceeeeeEEEecCCCceeEEEEEcCCeE
Q psy6105           8 SFRADNYCRPTIGNRSI---PSVADPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVPANPYVKVYLVCEGKR   83 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~---~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~~~~dpyv~v~l~~~~~~   83 (194)
                      -||+.+.|..-|.+.-.   ++.-+|  +-.+.+.   ....+-+++.+- .-|.++.+- |.-.+||||.|.+.+-+..
T Consensus       582 ~Fr~NGgCGYVlKP~~L~~~~~~F~P--~~~~~~~---~~tL~IkI~sGq~~~~~~~~~~-~~~~~dP~v~VeI~Gvp~D  655 (746)
T KOG0169|consen  582 MFRANGGCGYVLKPDFLLDSGSTFDP--KSNLPPV---KKTLKIKIISGQGWLPDFGKTK-FGEISDPDVYVEIAGVPAD  655 (746)
T ss_pred             hhccCCCccceECcHHHcCCCCccCC--CCCCCCC---CceeEEEEEecCcccCCCCCCc-ccccCCCCEEEEEcccccc
Confidence            37888889888876533   333444  1111111   111223333333 333333221 1112689999998877777


Q ss_pred             eEEeece-eecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhh
Q psy6105          84 IRKKRTS-VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDH  150 (194)
Q Consensus        84 ~~~~kT~-~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~  150 (194)
                      ...++|+ +..++.||.|+|+|.|.+..+++  +.|.+.|+|+|..++|+|+|+.+|++..+.+|+.|
T Consensus       656 ~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyRh  721 (746)
T KOG0169|consen  656 CAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYRH  721 (746)
T ss_pred             hhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEEecCCCCcccccceeeccHHHhhCceee
Confidence            7789999 55689999999999999998888  58999999999999999999999999999888887

>PLN02228 Phosphoinositide phospholipase C

Probab=99.06  E-value=6.9e-10  Score=95.41  Aligned_cols=80  Identities=21%  Similarity=0.322  Sum_probs=69.2

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcc-cceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFY-NEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~-~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      .||||+|.+.+.+....+++|+++.++.||+| +|+|.|.+..+++  +.|.+.|+|+|..+.+++||+..|+++.+..|
T Consensus       458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lRf~V~D~d~~~~d~figq~~lPv~~Lr~G  535 (567)
T PLN02228        458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLWFKVQDYDNDTQNDFAGQTCLPLPELKSG  535 (567)
T ss_pred             CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEEEEEEeCCCCCCCCEEEEEEcchhHhhCC
Confidence            58999999986655556789999888899999 9999999887776  58999999999888999999999999988766


Q ss_pred             hhh
Q psy6105         148 RDH  150 (194)
Q Consensus       148 ~~~  150 (194)
                      +.|
T Consensus       536 YR~  538 (567)
T PLN02228        536 VRA  538 (567)
T ss_pred             eeE
Confidence            655

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.06  E-value=1.4e-09  Score=98.05  Aligned_cols=69  Identities=32%  Similarity=0.530  Sum_probs=56.4

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~  144 (194)
                      +|||++|.+..    ..+++|-....++||+|++.+.-.+....   ..|.+...|+...+.|..||++.+..+..
T Consensus       732 ~dPya~v~~n~----~~k~rti~~~~~~npiw~~i~Yv~v~sk~---~r~~l~~~~~~~sgddr~lg~~~i~vsn~  800 (1227)
T COG5038         732 SDPYATVLVNN----LVKYRTIYGSSTLNPIWNEILYVPVTSKN---QRLTLECMDYEESGDDRNLGEVNINVSNV  800 (1227)
T ss_pred             cccceEEEecc----eeEEEEecccCccccceeeeEEEEecCCc---cEEeeeeecchhccccceeceeeeeeeee
Confidence            89999998854    46899999999999999997766654322   25778888888899999999999999865

>KOG1031|consensus

Probab=99.05  E-value=6.4e-10  Score=94.12  Aligned_cols=130  Identities=18%  Similarity=0.344  Sum_probs=94.6

Q ss_pred             EEEeeccCCCCCCCCCCC-CCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           9 FRADNYCRPTIGNRSIPS-VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g-~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      +-+....||+|+-||... ..|.||.|++...                                              ..
T Consensus         5 l~vki~a~r~lpvmdkasd~tdafveik~~n~----------------------------------------------t~   38 (1169)
T KOG1031|consen    5 LGVKIKAARHLPVMDKASDLTDAFVEIKFANT----------------------------------------------TF   38 (1169)
T ss_pred             ceeEEEeccCCcccccccccchheeEEEeccc----------------------------------------------ce
Confidence            446667778888777544 4566776666543                                              44


Q ss_pred             eceeecCCCCCccc-ceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          88 RTSVKKNSLNPFYN-EALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        88 kT~~~~~t~nP~~~-e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      +|.+-.+++||.|| +.|.|++...++++..|.|.+.|+|..+.++-||.+.|+++-+.-+..  .+.....+..+.+|+
T Consensus        39 ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~a--aqavhgkgtvisgw~  116 (1169)
T KOG1031|consen   39 KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEA--AQAVHGKGTVISGWF  116 (1169)
T ss_pred             ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhH--HhhhcCCceEEeeee
Confidence            55555566777776 568898988899889999999999999999999999999986542111  122334477889999


Q ss_pred             EccCCCCCCccccCCCCcceeee
Q psy6105         167 PLMETVPGQIPLSHSSNLPSSLS  189 (194)
Q Consensus       167 ~L~~~~~~~~~~~~~~~~~~~~~  189 (194)
                      ++.+..-|-+   |..|+-|++.
T Consensus       117 pifdtihgir---geinvivkvd  136 (1169)
T KOG1031|consen  117 PIFDTIHGIR---GEINVIVKVD  136 (1169)
T ss_pred             ecceeccccc---ceeEEEEEEe
Confidence            9999876655   7777776653

>KOG1326|consensus

Probab=99.01  E-value=9.3e-11  Score=103.80  Aligned_cols=54  Identities=26%  Similarity=0.450  Sum_probs=50.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD   66 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~   66 (194)
                      -+|+..+.|++|.+.|..+.+|||+.+.+...     .+.|.++.+|+||.|+++..|.
T Consensus       207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~q-----s~~T~~v~~tl~ptwdq~~~f~  260 (1105)
T KOG1326|consen  207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQ-----SKETEVVPGTLNPTWDQTIIFD  260 (1105)
T ss_pred             hhHHHHHHHHhhcCCCcccCCCchhhhhcccc-----cceeEeecCcCCCCccceeecc
Confidence            46888899999999999999999999999876     7999999999999999999985

>PLN02270 phospholipase D alpha

Probab=98.86  E-value=1.1e-08  Score=90.46  Aligned_cols=103  Identities=24%  Similarity=0.364  Sum_probs=83.4

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCC-CCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      +||||.|.+...    +..+|+++.+. .||+|+|+|...+.-..   ..++++|.|.+.++. .+||.+.|+...+   
T Consensus        47 ~~~y~tv~~~~a----~v~rtr~~~~~~~~p~w~e~f~i~~ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~~---  115 (808)
T PLN02270         47 SQLYATIDLEKA----RVGRTRKIENEPKNPRWYESFHIYCAHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEEI---  115 (808)
T ss_pred             CCceEEEEeCCc----EEEEEeecCCCCCCCccccceEEeeccCc---ceEEEEEecCCccCc-eEEEEEEEEHHHh---
Confidence            799999998654    58899999874 69999998887664322   489999999998865 6999999999744   


Q ss_pred             hhhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         148 RDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       148 ~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                             +.  +..+.+||+|...  +.+|..+...+.+++.|.+.
T Consensus       116 -------~~--g~~i~~~~~~~~~--~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270        116 -------LD--GEEVDRWVEILDN--DKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             -------cC--CCccccEEeccCC--CCCcCCCCCEEEEEEEEEEc
Confidence                   21  6679999999884  47788888999999988764

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.84  E-value=9.5e-10  Score=71.21  Aligned_cols=66  Identities=23%  Similarity=0.419  Sum_probs=59.2

Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc-chhhHHH
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI-GRDHWLE  153 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~W~~  153 (194)
                      ..||+...+..||+|.|+|.|.+...++.+..|.+.|+.  ...+.+.||.+.+++.+.+. +.+||.+
T Consensus        36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~geeE~~HW~e  102 (103)
T cd08684          36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLSTQETDHWLE  102 (103)
T ss_pred             cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCCHHHhhhhhc
Confidence            678888999999999999999999899999999999987  56788999999999999885 6789975

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG0905|consensus

Probab=98.81  E-value=2.6e-09  Score=96.26  Aligned_cols=91  Identities=25%  Similarity=0.498  Sum_probs=79.9

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      +||||+.++.+..++..++||+++++|.||.|||.+.+. ++.+.+.++.|.++||..+.+..+.++|.+.|+|....- 
T Consensus      1545 P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l- 1623 (1639)
T KOG0905|consen 1545 PDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDL- 1623 (1639)
T ss_pred             CCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcch-
Confidence            689999999999999999999999999999999999998 777778888999999999998899999999999987631 


Q ss_pred             hhhHHHHhhCCCCceEeEEEccCC
Q psy6105         148 RDHWLEMLDNPRQPVTQWYPLMET  171 (194)
Q Consensus       148 ~~~W~~~l~~p~~~~~~W~~L~~~  171 (194)
                                 .+...+||+|...
T Consensus      1624 -----------~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1624 -----------LKESVGWYNLGAC 1636 (1639)
T ss_pred             -----------hhhhcceeecccc
Confidence                       3334599999654

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=98.70  E-value=6e-08  Score=66.92  Aligned_cols=54  Identities=30%  Similarity=0.349  Sum_probs=42.0

Q ss_pred             CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCC--CceeEEEEEc
Q psy6105          22 RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA--NPYVKVYLVC   79 (194)
Q Consensus        22 ~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~~   79 (194)
                      ...+|.+||||+|.+...    ...+|++++++.||.|||.|.|.+..  +-.+.+.+.+
T Consensus         7 ~~~~G~~dPYv~v~v~~~----~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d   62 (111)
T cd04052           7 ESKTGLLSPYAELYLNGK----LVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD   62 (111)
T ss_pred             cccCCCCCceEEEEECCE----EEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEE
Confidence            346889999999999642    35789999999999999999998763  3445555543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1011|consensus

Probab=98.67  E-value=1.8e-08  Score=86.40  Aligned_cols=82  Identities=29%  Similarity=0.488  Sum_probs=64.9

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-----------CCCceeEEE
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-----------GSDELMGCT  137 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-----------~~~~~iG~~  137 (194)
                      +||||.+.++..     +++|+++...+||+|||.|.|+.....   ..|.+.|||.|..           .+|+|+|+.
T Consensus       316 sdpyvt~qv~kt-----krrtrti~~~lnpvw~ekfhfechnst---drikvrvwded~dlksklrqkl~resddflgqt  387 (1283)
T KOG1011|consen  316 SDPYVTAQVGKT-----KRRTRTIHQELNPVWNEKFHFECHNST---DRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQT  387 (1283)
T ss_pred             CCCcEEEeeccc-----chhhHhhhhccchhhhhheeeeecCCC---ceeEEEEecCcccHHHHHHHHhhhcccccccce
Confidence            899999988654     789999999999999999999876543   4899999997632           379999999


Q ss_pred             EeCCCCCCcchhhHHHHhhCCCCceEeEEEccCCC
Q psy6105         138 AIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV  172 (194)
Q Consensus       138 ~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~  172 (194)
                      .|.+..+              ...+.-||+|.-+.
T Consensus       388 vievrtl--------------sgemdvwynlekrt  408 (1283)
T KOG1011|consen  388 VIEVRTL--------------SGEMDVWYNLEKRT  408 (1283)
T ss_pred             eEEEEec--------------ccchhhhcchhhcc
Confidence            9988765              33455677775543

>KOG1264|consensus

Probab=98.65  E-value=1.7e-07  Score=82.23  Aligned_cols=77  Identities=23%  Similarity=0.325  Sum_probs=62.3

Q ss_pred             CceeEEEEEcCCeEeE-EeeceeecCCCCCccc-ceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          70 NPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYN-EALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        70 dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~-e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      .|||.|.+.+..-... .+.|.++.+.+||+|| |.|+|++..+++  +.|.+.|+|.|.++...|||++..++..+..|
T Consensus      1086 cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~--A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1086 CPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF--AFLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             CCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce--EEEEEEEecccccCCcceeeeeecchhhhhcc
Confidence            4778887765443333 4455567789999999 999999988876  58999999999999999999999999987655


Q ss_pred             h
Q psy6105         148 R  148 (194)
Q Consensus       148 ~  148 (194)
                      .
T Consensus      1164 f 1164 (1267)
T KOG1264|consen 1164 F 1164 (1267)
T ss_pred             c
Confidence            4

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.62  E-value=1.5e-07  Score=63.41  Aligned_cols=85  Identities=16%  Similarity=0.096  Sum_probs=60.1

Q ss_pred             EEeeccCCCCCCCC---CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105          10 RADNYCRPTIGNRS---IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus        10 r~~~~~a~~l~~~d---~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      .+++.||||+.-.+   ..+.+||||.|++...                                             .+
T Consensus         2 ~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~---------------------------------------------~k   36 (109)
T cd08689           2 TITITSARDVDHIASPRFSKRPETYVSIKVEDV---------------------------------------------ER   36 (109)
T ss_pred             EEEEEEEecCccccchhhccCCCcEEEEEECCE---------------------------------------------EE
Confidence            46777888887666   5666777777777642                                             25


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      .+|+.   +.||.|||+|.|.+.  .  ...++|+|||+.. ...--||..-+.++.+-.+
T Consensus        37 aRTr~---srnd~WnE~F~i~Vd--k--~nEiel~VyDk~~-~~~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          37 ARTKP---SRNDRWNEDFEIPVE--K--NNEEEVIVYDKGG-DQPVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             EeccC---CCCCcccceEEEEec--C--CcEEEEEEEeCCC-CeecceeeehhhHHHHHHH
Confidence            55555   478999999888883  2  2489999999754 2455789999998876443

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN03008 Phospholipase D delta

Probab=98.51  E-value=1.6e-07  Score=83.55  Aligned_cols=40  Identities=33%  Similarity=0.485  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105          25 PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        25 ~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      .+.+||||+|.|+..    ++.+|+++++++||+|||.|.|.+.
T Consensus        74 ~~tSDPYV~I~Lg~~----rv~RTrVi~n~~NPvWNE~F~f~va  113 (868)
T PLN03008         74 VITSDPYVTVVVPQA----TLARTRVLKNSQEPLWDEKFNISIA  113 (868)
T ss_pred             cCCCCceEEEEECCc----ceeeEEeCCCCCCCCcceeEEEEec
Confidence            357899999999543    3679999999999999999999986

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=98.51  E-value=9.8e-08  Score=69.24  Aligned_cols=42  Identities=43%  Similarity=0.706  Sum_probs=36.1

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecC
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA  110 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~  110 (194)
                      +||||+|.+.+......+++|+++++++||+|||+|.|.+..
T Consensus        19 sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~   60 (148)
T cd04010          19 CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTI   60 (148)
T ss_pred             CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEec
Confidence            799999999875444457899999999999999999999853

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG2059|consensus

Probab=98.51  E-value=2.1e-07  Score=80.44  Aligned_cols=88  Identities=28%  Similarity=0.445  Sum_probs=73.4

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .|+|+.|.+..+    ...+|.++.+++.|.|.|.|.|.++.. .  ..|.+-|||.| +++|+.||.+.|.-..+    
T Consensus        26 ~D~yC~v~lD~E----~v~RT~tv~ksL~PF~gEe~~~~iP~~-F--~~l~fYv~D~d-~~~D~~IGKvai~re~l----   93 (800)
T KOG2059|consen   26 RDCYCTVNLDQE----EVCRTATVEKSLCPFFGEEFYFEIPRT-F--RYLSFYVWDRD-LKRDDIIGKVAIKREDL----   93 (800)
T ss_pred             cCcceEEeecch----hhhhhhhhhhhcCCccccceEEecCcc-e--eeEEEEEeccc-cccccccceeeeeHHHH----
Confidence            799999998654    478999999999999999999999753 2  48999999999 89999999999876533    


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCc
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQI  176 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~  176 (194)
                            ...|  ....|+.|++..++..
T Consensus        94 ------~~~~--~~d~W~~L~~VD~dsE  113 (800)
T KOG2059|consen   94 ------HMYP--GKDTWFSLQPVDPDSE  113 (800)
T ss_pred             ------hhCC--CCccceeccccCCChh
Confidence                  3333  6789999999988774

>KOG1013|consensus

Probab=98.49  E-value=8.5e-08  Score=76.30  Aligned_cols=102  Identities=23%  Similarity=0.294  Sum_probs=78.1

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-CC-ceeEEEEEcCC---
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-AN-PYVKVYLVCEG---   81 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-~d-pyv~v~l~~~~---   81 (194)
                      ..+-+.......|.++|.+|-+||||+.++.++-+...+++|.+.++|+||.||+.|.|.+. +| .|+++.+....   
T Consensus       233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~  312 (362)
T KOG1013|consen  233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI  312 (362)
T ss_pred             CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC
Confidence            34556666668889999999999999999999877888999999999999999999999987 22 46666654211   


Q ss_pred             ----------eEeEEeeceeecCCCCCcccceEEEEe
Q psy6105          82 ----------KRIRKKRTSVKKNSLNPFYNEALLFDV  108 (194)
Q Consensus        82 ----------~~~~~~kT~~~~~t~nP~~~e~f~f~v  108 (194)
                                .....+++.+.+....+.|++.+.|..
T Consensus       313 G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~  349 (362)
T KOG1013|consen  313 GKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFER  349 (362)
T ss_pred             CcCccCCCcccccccccchhhcCcccccccccccccc
Confidence                      122356677777778888887766653

>KOG1327|consensus

Probab=98.42  E-value=1.2e-06  Score=74.43  Aligned_cols=74  Identities=28%  Similarity=0.463  Sum_probs=59.7

Q ss_pred             CCceeEEEEE-cCCeEeEEeeceeecCCCCCcccceEEEEecCCCCC----CceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105          69 ANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVN----DVSLIIKVIDYDRIGSDELMGCTAIGSSF  143 (194)
Q Consensus        69 ~dpyv~v~l~-~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~----~~~l~i~V~d~~~~~~~~~iG~~~i~l~~  143 (194)
                      +|||..++-. +.+.....++|.+++++++|.|.+   |.++...+.    +..++|.+||++..+++++||.+...+..
T Consensus       157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~  233 (529)
T KOG1327|consen  157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSE  233 (529)
T ss_pred             CCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHH
Confidence            8999988776 566677889999999999999995   554444332    36899999999999999999999987765


Q ss_pred             CC
Q psy6105         144 IG  145 (194)
Q Consensus       144 ~~  145 (194)
                      ..
T Consensus       234 ~~  235 (529)
T KOG1327|consen  234 LQ  235 (529)
T ss_pred             hc
Confidence            53

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.38  E-value=7e-07  Score=62.23  Aligned_cols=88  Identities=25%  Similarity=0.437  Sum_probs=65.2

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecC-------------CCCCCceEEEEEEecCC--------
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-------------SNVNDVSLIIKVIDYDR--------  127 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~-------------~~l~~~~l~i~V~d~~~--------  127 (194)
                      -++||++.+..-+ .....+|+++.++.-|.|+..+.|..+.             +-+....+.++||+...        
T Consensus        33 VN~yv~i~lSFl~-~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~  111 (143)
T cd08683          33 VNSYVTIHLSFLP-EKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK  111 (143)
T ss_pred             cceEEEEEeccCC-CCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence            5689988865211 1247889999999999999999997541             23456689999998532        


Q ss_pred             --CCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105         128 --IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus       128 --~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                        ..+|-+||.+.|++.          ++|.+ +..+++||++
T Consensus       112 ~~~~~DilLG~v~IPl~----------~Ll~~-rsGitGW~pi  143 (143)
T cd08683         112 IETSGDILLGTVKIPLR----------DLLTK-RSGITGWYPI  143 (143)
T ss_pred             cCcCCcEEEEEEEeeHH----------HHhhc-ccCccccccC
Confidence              235668999999996          55544 8999999986

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02352 phospholipase D epsilon

Probab=98.26  E-value=3.1e-06  Score=75.07  Aligned_cols=97  Identities=14%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .+|||.|.+...    +..+|   .+.-||+|+|+|...+.-  ..+..++++|.|     ...+||.+.|+...+    
T Consensus        36 ~~~y~tv~~~~~----~v~rt---~~~~~p~w~e~f~i~~ah--~~~~~~~f~vk~-----~~~~ig~~~~p~~~~----   97 (758)
T PLN02352         36 KATYVTIKIGNK----KVAKT---SHEYDRVWNQTFQILCAH--PLDSTITITLKT-----KCSILGRFHIQAHQI----   97 (758)
T ss_pred             CCceEEEEeCCc----EEecC---CCCCCCccccceeEEeee--ecCCcEEEEEec-----CCeEEEEEEEEHHHh----
Confidence            589999998543    46677   555699999988776532  222479999987     368999999998743    


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                            +.. +..+++||+|...  +.+|..+ ..+.+++.|.|.
T Consensus        98 ------~~g-~~~~~~~~~~~~~--~~~p~~~-~~~~~~~~~~~~  132 (758)
T PLN02352         98 ------VTE-ASFINGFFPLIME--NGKPNPE-LKLRFMLWFRPA  132 (758)
T ss_pred             ------hCC-CcccceEEEcccC--CCCCCCC-CEEEEEEEEEEh
Confidence                  321 2338999999884  4667766 788888888765

>PLN02223 phosphoinositide phospholipase C

Probab=98.20  E-value=4.1e-06  Score=71.70  Aligned_cols=72  Identities=17%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             eeEEEeeccCCCCCC-----CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCC-C-ceeEEEEE
Q psy6105           7 RSFRADNYCRPTIGN-----RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-N-PYVKVYLV   78 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~-----~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~-d-pyv~v~l~   78 (194)
                      +.+.+++++++.++.     .+.....||||+|.+.+......+++|.+..++.||+|||+|.|.+.. + .++++.+.
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            568899999998741     123456899999999864334456778888899999999999998762 2 24555554

>KOG2060|consensus

Probab=98.19  E-value=1.2e-06  Score=70.96  Aligned_cols=93  Identities=32%  Similarity=0.527  Sum_probs=77.4

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEe-cCCCCCCceeEEEEeCCCCCCcc
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVID-YDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d-~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      ++|||+|+++.++....+.+|+...+|++|.|-+...|+-++.   ...|.++||- +..+..+.|+|.+++-++++.  
T Consensus       291 ~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~---~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~--  365 (405)
T KOG2060|consen  291 PAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP---GKYLQGTVWGDYGRMDHKSFMGVAQIMLDELN--  365 (405)
T ss_pred             cCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC---ccEEEEEEeccccccchHHHhhHHHHHhhhhc--
Confidence            7899999999999989999999999999999999999876553   3589999985 777788899999999988653  


Q ss_pred             hhhHHHHhhCCCCceEeEEEccCCCCCC
Q psy6105         148 RDHWLEMLDNPRQPVTQWYPLMETVPGQ  175 (194)
Q Consensus       148 ~~~W~~~l~~p~~~~~~W~~L~~~~~~~  175 (194)
                               .-..++..||+|.+..+-.
T Consensus       366 ---------ls~~~~igwyKlfgsssl~  384 (405)
T KOG2060|consen  366 ---------LSSSPVIGWYKLFGSSSLV  384 (405)
T ss_pred             ---------cccccceeeeeccCCccCC
Confidence                     2244789999999875433

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.01  E-value=1.3e-05  Score=57.00  Aligned_cols=72  Identities=19%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCC--CcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCC
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLN--PFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSS  142 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~n--P~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~  142 (194)
                      +|+||++.+.+.  ...+++|.+..+++|  |.||++|.|++.........+.+..++....+..+.+....+.+.
T Consensus        25 sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lq   98 (133)
T cd08374          25 SDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQ   98 (133)
T ss_pred             cCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEE
Confidence            799999999764  346899999999999  999999999976654433233333333222233345555555443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02952 phosphoinositide phospholipase C

Probab=97.98  E-value=9.6e-05  Score=64.55  Aligned_cols=73  Identities=19%  Similarity=0.289  Sum_probs=52.6

Q ss_pred             ceeEEEeeccCCCCCCC------CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCC--ceeEEEE
Q psy6105           6 SRSFRADNYCRPTIGNR------SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN--PYVKVYL   77 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~------d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~d--pyv~v~l   77 (194)
                      ...+.++++++..++..      |.....||||+|.+.+......+.+|+++.++.||+|||+|.|.+...  .++++.+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            35788999999887421      112345999999998643345577999999999999999999986632  3455544


Q ss_pred             E
Q psy6105          78 V   78 (194)
Q Consensus        78 ~   78 (194)
                      .
T Consensus       549 ~  549 (599)
T PLN02952        549 R  549 (599)
T ss_pred             E
Confidence            4

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=97.88  E-value=8.4e-06  Score=56.66  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=25.3

Q ss_pred             eeEEecCCCCceeeeeEEEecC----CCceeEEEEE
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVP----ANPYVKVYLV   78 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~----~dpyv~v~l~   78 (194)
                      +|+++++|+||+|||+|.|.++    .+.-+.+.+.
T Consensus        50 kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~   85 (118)
T cd08677          50 QTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR   85 (118)
T ss_pred             EcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence            4899999999999999999988    3334555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>PLN02230 phosphoinositide phospholipase C 4

Probab=97.87  E-value=2.6e-05  Score=67.99  Aligned_cols=72  Identities=13%  Similarity=0.196  Sum_probs=52.1

Q ss_pred             eeEEEeeccCCCCCCC------CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCC-C-ceeEEEEE
Q psy6105           7 RSFRADNYCRPTIGNR------SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-N-PYVKVYLV   78 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~------d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~-d-pyv~v~l~   78 (194)
                      ..+.++++++.+++..      +.....||||+|.+.+......+++|++..++.||+|||+|.|.+.. + .++++.+.
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~  548 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH  548 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence            5788999999976421      22345799999999864333456788999999999999999998652 2 34555443

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=97.86  E-value=1.1e-05  Score=56.36  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=20.0

Q ss_pred             eeEEecCCCCceeeeeEEEecC
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      +|+++.+|+||+|||+|.|.+.
T Consensus        41 kTkv~~~tlnPvwNE~f~F~v~   62 (120)
T cd08395          41 ATKSKNNNWSPKYNETFQFILG   62 (120)
T ss_pred             eeEEecCCCCCccCcEEEEEee
Confidence            4788899999999999999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>PLN02222 phosphoinositide phospholipase C 2

Probab=97.82  E-value=7.9e-05  Score=64.86  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=50.7

Q ss_pred             eeEEEeeccCCCCC---C---CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCC--ceeEEEE
Q psy6105           7 RSFRADNYCRPTIG---N---RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN--PYVKVYL   77 (194)
Q Consensus         7 ~~~r~~~~~a~~l~---~---~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~d--pyv~v~l   77 (194)
                      ..+++.++++.+++   +   .+.....||||+|.+.+......+++|+++.++.||+|||+|.|.+..-  .++++.+
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            46889999998642   1   1223467999999997533344567899999999999999999986522  3444444

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=97.82  E-value=3.8e-05  Score=52.58  Aligned_cols=39  Identities=26%  Similarity=0.485  Sum_probs=31.1

Q ss_pred             CCceeEEEEEcCC-eEeEEeeceeecCCCCCcccceEEEEe
Q psy6105          69 ANPYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDV  108 (194)
Q Consensus        69 ~dpyv~v~l~~~~-~~~~~~kT~~~~~t~nP~~~e~f~f~v  108 (194)
                      +|||+++++.+.. .....++|++++++.||+|| +|.|.+
T Consensus        21 ~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~   60 (110)
T cd04047          21 SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL   60 (110)
T ss_pred             CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH
Confidence            7999999987543 44567999999999999999 555543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG0905|consensus

Probab=97.80  E-value=1.1e-05  Score=73.52  Aligned_cols=58  Identities=28%  Similarity=0.447  Sum_probs=51.6

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEe
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD   66 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~   66 (194)
                      +-+=+..|++|+-..-+..+||||+.+|.|+.++..++||+++++|.||.|||+..|.
T Consensus      1526 LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~ 1583 (1639)
T KOG0905|consen 1526 LTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD 1583 (1639)
T ss_pred             EEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec
Confidence            4566788999966665778999999999999888889999999999999999999987

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=97.74  E-value=5.7e-05  Score=52.46  Aligned_cols=32  Identities=16%  Similarity=0.318  Sum_probs=24.9

Q ss_pred             eEEecCCCCceeeeeEEEecCCCceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPANPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~   79 (194)
                      |+++++|+||+|||.|.|.+...-...+.+.+
T Consensus        35 Tk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d   66 (118)
T cd08686          35 TRVCRDTTEPNWNEEFEIELEGSQTLRILCYE   66 (118)
T ss_pred             eeeecCCCCCccceEEEEEeCCCCEEEEEEEE
Confidence            67899999999999999998754455555543

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PLN02228 Phosphoinositide phospholipase C

Probab=97.66  E-value=0.00017  Score=62.61  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=51.0

Q ss_pred             eeEEEeeccCCCCC---CC---CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCcee-eeeEEEecCCC--ceeEEEE
Q psy6105           7 RSFRADNYCRPTIG---NR---SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFY-NEALLFDVPAN--PYVKVYL   77 (194)
Q Consensus         7 ~~~r~~~~~a~~l~---~~---d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w-~e~f~f~~~~d--pyv~v~l   77 (194)
                      ..+++++++++.|+   ..   +.....||||+|.+.+......+.+|++++++.||+| ||.|.|.+...  .++++.+
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            46889999999873   12   2233579999999975433445679999999999999 99999986522  3444444

>KOG0169|consensus

Probab=97.58  E-value=0.00033  Score=61.78  Aligned_cols=71  Identities=17%  Similarity=0.288  Sum_probs=52.7

Q ss_pred             eeEEEeeccCCCC-CCCCCC---CCCCcEEEEEEEcCCeEeEEEeeE-EecCCCCceeeeeEEEecCCCceeEEEE
Q psy6105           7 RSFRADNYCRPTI-GNRSIP---SVADPYVKVYLVCEGKRIRKKRTS-VKKNSLNPFYNEALLFDVPANPYVKVYL   77 (194)
Q Consensus         7 ~~~r~~~~~a~~l-~~~d~~---g~~dpyv~v~l~~~~~~~~~~~T~-~~~~t~nP~w~e~f~f~~~~dpyv~v~l   77 (194)
                      ..|.++++.+++. +..+.+   ..+||||.|.+.+........+|+ +..++.||.|+|+|+|.+...-++-|++
T Consensus       616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF  691 (746)
T KOG0169|consen  616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRF  691 (746)
T ss_pred             ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEE
Confidence            3699999999954 444433   468999999987655566678899 7778899999999999987433333333

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=97.57  E-value=0.00011  Score=52.68  Aligned_cols=65  Identities=22%  Similarity=0.343  Sum_probs=40.9

Q ss_pred             eEEEeeccCCCC---CCCCCCCCCCcEEEEEE-EcCCeEeEEEeeEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105           8 SFRADNYCRPTI---GNRSIPSVADPYVKVYL-VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus         8 ~~r~~~~~a~~l---~~~d~~g~~dpyv~v~l-~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      -++|++|...+.   ...|.  -.--++.-.- .-.     +++|+++++++||+|||.|.|.++.    +..+.+.+.+
T Consensus        21 V~karnL~~~d~~~~~~~Dp--YVKv~l~~~~~k~~-----kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d   93 (138)
T cd08407          21 VIKAKNLHSDQLKLLLGIDV--SVKVTLKHQNAKLK-----KKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN   93 (138)
T ss_pred             EEEecCCCccccCCCCCCCe--EEEEEEEcCCcccc-----eeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence            467888888762   22342  1112222110 113     6889999999999999999999883    4445555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=97.52  E-value=0.00011  Score=52.62  Aligned_cols=34  Identities=41%  Similarity=0.739  Sum_probs=26.9

Q ss_pred             EeeEEecCCCCceeeeeEEEecC----CCceeEEEEEc
Q psy6105          46 KRTSVKKNSLNPFYNEALLFDVP----ANPYVKVYLVC   79 (194)
Q Consensus        46 ~~T~~~~~t~nP~w~e~f~f~~~----~dpyv~v~l~~   79 (194)
                      ++|+++++|+||+|||+|.|.++    .+.-+++.+.+
T Consensus        54 ~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~   91 (136)
T cd08406          54 KKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE   91 (136)
T ss_pred             cCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence            46899999999999999999987    34445665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.50  E-value=0.00046  Score=50.61  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             CCceeEEEEEcCCeEe-EEeeceeecCCCCCcccceEEEEecCCCCC-CceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105          69 ANPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVPASNVN-DVSLIIKVIDYDRIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~  144 (194)
                      ++.||.+.+..++..+ ....|..+..+..+.|||.+.|++...++. ++.|.|+||+.+..+....||.+.++|-..
T Consensus        30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            6789999887665432 234566666667789999999998777663 578999999977656678999999999764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=97.50  E-value=5.9e-05  Score=54.53  Aligned_cols=22  Identities=36%  Similarity=0.910  Sum_probs=20.0

Q ss_pred             eeEEecCCCCceeeeeEEEecC
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      +|+++++|+||+|||+|.|.+.
T Consensus        70 KT~v~kktlnPvfNE~F~f~v~   91 (146)
T cd04028          70 KTKIARKTLDPLYQQQLVFDVS   91 (146)
T ss_pred             eceecCCCCCCccCCeEEEEEc
Confidence            4789999999999999999875

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=97.48  E-value=0.00051  Score=47.68  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=24.3

Q ss_pred             eEEecCCCCceeeeeEEEecCC--CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA--NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~~   79 (194)
                      |+++++++||.|||.|.|.+..  +..+++.+.+
T Consensus        39 T~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d   72 (119)
T cd04036          39 TKTIKNSINPVWNETFEFRIQSQVKNVLELTVMD   72 (119)
T ss_pred             cceecCCCCCccceEEEEEeCcccCCEEEEEEEE
Confidence            6788899999999999998763  3345555544

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=97.39  E-value=9.9e-05  Score=51.92  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=26.9

Q ss_pred             EEeeEEecCCCCceeeeeEEEecC----CCceeEEEEE
Q psy6105          45 KKRTSVKKNSLNPFYNEALLFDVP----ANPYVKVYLV   78 (194)
Q Consensus        45 ~~~T~~~~~t~nP~w~e~f~f~~~----~dpyv~v~l~   78 (194)
                      +++|+++++++||+|||+|.|.++    .+--+.+++.
T Consensus        53 ~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~   90 (124)
T cd08680          53 LFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC   90 (124)
T ss_pred             eEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence            568999999999999999999987    3344555544

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=97.36  E-value=0.00013  Score=51.31  Aligned_cols=31  Identities=32%  Similarity=0.595  Sum_probs=23.0

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      |+++++++||.|||+|.|.++.    +-.+.+.+.
T Consensus        57 T~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          57 TSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             eeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            4678899999999999999872    334455544

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>PLN02964 phosphatidylserine decarboxylase

Probab=97.36  E-value=0.00042  Score=61.21  Aligned_cols=77  Identities=13%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             CceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC-cch
Q psy6105          70 NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG-IGR  148 (194)
Q Consensus        70 dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~-~~~  148 (194)
                      |+|..+...+.    +..+|...++|.||+||+.-.|.+.+.+..  ...+.|||.+.++.++++|.+.+++..+. .+.
T Consensus        69 ~~~~~~~~~g~----~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi  142 (644)
T PLN02964         69 DKWLACVSFGE----QTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFETNRLSKNTLVGYCELDLFDFVTQEP  142 (644)
T ss_pred             CcEEEEEEecc----eeeeeccccccCCcccchhhceEeccCCcc--eEEEEEEecCCCCHHHhhhheeecHhhccHHHH
Confidence            56554433333    489999999999999999999988776654  46999999999999999999999886643 334


Q ss_pred             hhHH
Q psy6105         149 DHWL  152 (194)
Q Consensus       149 ~~W~  152 (194)
                      +++.
T Consensus       143 ~elk  146 (644)
T PLN02964        143 ESAC  146 (644)
T ss_pred             HHHH
Confidence            4443

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=97.36  E-value=0.00012  Score=51.68  Aligned_cols=32  Identities=38%  Similarity=0.585  Sum_probs=24.6

Q ss_pred             eeEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      +|+++++++||+|||+|.|.++.    +-.+.+.+.
T Consensus        56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            57899999999999999999872    234444443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.33  E-value=9.5e-05  Score=51.79  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=25.0

Q ss_pred             eeEEecCCCCceeeeeEEEec-C----CCceeEEEEEc
Q psy6105          47 RTSVKKNSLNPFYNEALLFDV-P----ANPYVKVYLVC   79 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~-~----~dpyv~v~l~~   79 (194)
                      +|+++++++||.|||+|.|.+ +    .+..+.+.+.+
T Consensus        52 kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d   89 (122)
T cd08381          52 KTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS   89 (122)
T ss_pred             eCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence            478899999999999999986 3    23455555543

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=97.31  E-value=0.00011  Score=51.67  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=34.1

Q ss_pred             eeEEEeeccCCCCC--CCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105           7 RSFRADNYCRPTIG--NRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus         7 ~~~r~~~~~a~~l~--~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      ..++|++|.+.+..  ..|  --.--|+.- -.......   +|+++++|+||+|||+|.|.+.
T Consensus        20 ~vi~a~~L~~~d~~~g~~d--pyVkv~l~p-~~~~~~~~---kT~v~~~t~nP~~nE~f~f~v~   77 (125)
T cd08393          20 HVIQCQDLAAADPKKQRSD--PYVKTYLLP-DKSNRGKR---KTSVKKKTLNPVFNETLRYKVE   77 (125)
T ss_pred             EEEEeCCCCCcCCCCCCCC--cEEEEEEEc-CCCccccc---cCccCcCCCCCccCceEEEECC
Confidence            35788888887753  223  112122210 00000112   5899999999999999999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.29  E-value=0.00016  Score=51.53  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=22.4

Q ss_pred             EEeeEEecCCC-CceeeeeEEEecCC
Q psy6105          45 KKRTSVKKNSL-NPFYNEALLFDVPA   69 (194)
Q Consensus        45 ~~~T~~~~~t~-nP~w~e~f~f~~~~   69 (194)
                      ++||+++++|+ ||+|||+|.|+++.
T Consensus        52 KkKT~v~k~t~~~P~fNEsF~Fdv~~   77 (135)
T cd08692          52 KKKTRLVKSSNGQVKWGETMIFPVTQ   77 (135)
T ss_pred             eecCccEECCCCCceecceEEEeCCc
Confidence            68899999996 69999999999883

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=97.26  E-value=0.00016  Score=52.80  Aligned_cols=6  Identities=50%  Similarity=0.617  Sum_probs=2.4

Q ss_pred             eEEEEE
Q psy6105         117 SLIIKV  122 (194)
Q Consensus       117 ~l~i~V  122 (194)
                      .|++.|
T Consensus       129 ~l~v~i  134 (155)
T cd08690         129 KLEVKV  134 (155)
T ss_pred             EEEEEE
Confidence            344444

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=97.24  E-value=0.00024  Score=49.61  Aligned_cols=19  Identities=21%  Similarity=0.712  Sum_probs=12.8

Q ss_pred             eeeeEEEecCCC-ceeEEEE
Q psy6105          59 YNEALLFDVPAN-PYVKVYL   77 (194)
Q Consensus        59 w~e~f~f~~~~d-pyv~v~l   77 (194)
                      |||.|.|.+..+ -.+.+.+
T Consensus        49 WnE~F~f~v~~~~~~l~~~v   68 (121)
T cd08401          49 FGEDFYFEIPRTFRHLSFYI   68 (121)
T ss_pred             cCCeEEEEcCCCCCEEEEEE
Confidence            999999998732 3344443

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=97.23  E-value=0.0002  Score=49.89  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=20.1

Q ss_pred             eeEEecCCCCceeeeeEEEecC
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      +|+++++|+||.|||+|.|.+.
T Consensus        51 kT~v~~~t~~P~~nE~F~f~v~   72 (119)
T cd08685          51 KTSTVPDSANPLFHETFSFDVN   72 (119)
T ss_pred             eCccccCCCCCccccEEEEEcC
Confidence            5788999999999999999976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=97.18  E-value=0.0003  Score=50.37  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=22.6

Q ss_pred             EEeeEEecCCCCceeeeeEEEecC
Q psy6105          45 KKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        45 ~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      +++|+++++++||+|||+|.|.++
T Consensus        54 ~~kT~v~~~t~nPvfnEtF~f~i~   77 (138)
T cd08408          54 KSKTSIRRGQPDPEFKETFVFQVA   77 (138)
T ss_pred             eccceeecCCCCCcEeeeEEEECC
Confidence            579999999999999999999987

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=97.17  E-value=0.00033  Score=50.03  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=25.6

Q ss_pred             EeeEEecCCCCceeeeeEEEecCCC----ceeEEEEE
Q psy6105          46 KRTSVKKNSLNPFYNEALLFDVPAN----PYVKVYLV   78 (194)
Q Consensus        46 ~~T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~   78 (194)
                      ++|+++++++||.|||.|.|.++.+    ..+.+.+.
T Consensus        53 ~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~   89 (137)
T cd08409          53 KKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM   89 (137)
T ss_pred             eecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence            3788999999999999999998732    34555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>PLN02270 phospholipase D alpha

Probab=97.15  E-value=0.001  Score=59.71  Aligned_cols=56  Identities=20%  Similarity=0.176  Sum_probs=44.3

Q ss_pred             EEEeeccCCCCCCCC------------------CCCCCCcEEEEEEEcCCeEeEEEeeEEecCC-CCceeeeeEEEecC
Q psy6105           9 FRADNYCRPTIGNRS------------------IPSVADPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVP   68 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d------------------~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t-~nP~w~e~f~f~~~   68 (194)
                      |-+.+..|++|+.+|                  ..+.+||||.|.+...    ...+|.++.+. .||.|+|.|...+.
T Consensus        10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a----~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270         10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA----RVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc----EEEEEeecCCCCCCCccccceEEeec
Confidence            557778888887632                  1357899999999864    57899999885 69999999988765

>KOG1030|consensus

Probab=97.14  E-value=0.00075  Score=49.32  Aligned_cols=56  Identities=29%  Similarity=0.331  Sum_probs=34.1

Q ss_pred             eEEEeeccCCCC-CCCCC-----CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-CCceeEEEEEc
Q psy6105           8 SFRADNYCRPTI-GNRSI-----PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-ANPYVKVYLVC   79 (194)
Q Consensus         8 ~~r~~~~~a~~l-~~~d~-----~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-~dpyv~v~l~~   79 (194)
                      -.|+.+|.++|. ...|-     -|...  .+-.....              ++||+|||.|+|.+. ++.-+++.+.+
T Consensus        12 v~~g~~L~~rD~~~sSDPyVVl~lg~q~--lkT~~v~~--------------n~NPeWNe~ltf~v~d~~~~lkv~VyD   74 (168)
T KOG1030|consen   12 VKRGKNLAIRDFLGSSDPYVVLELGNQK--LKTRVVYK--------------NLNPEWNEELTFTVKDPNTPLKVTVYD   74 (168)
T ss_pred             EEeecCeeeeccccCCCCeEEEEECCee--eeeeeecC--------------CCCCcccceEEEEecCCCceEEEEEEe
Confidence            467888888888 55452     11111  22222222              689999999999987 44445555543

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=97.14  E-value=0.00033  Score=49.16  Aligned_cols=11  Identities=9%  Similarity=-0.043  Sum_probs=5.4

Q ss_pred             EEEeeccCCCC
Q psy6105           9 FRADNYCRPTI   19 (194)
Q Consensus         9 ~r~~~~~a~~l   19 (194)
                      ++|++|.+.+.
T Consensus         6 ~~A~~L~~~d~   16 (126)
T cd08682           6 LQARGLLCKGK   16 (126)
T ss_pred             EECcCCcCCCC
Confidence            45555555443

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=97.02  E-value=0.00044  Score=48.45  Aligned_cols=21  Identities=52%  Similarity=0.855  Sum_probs=19.0

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++++||.|||+|.|.+.
T Consensus        57 T~v~~~~~nP~wne~f~f~i~   77 (127)
T cd04030          57 TSVKKDNLNPVFDETFEFPVS   77 (127)
T ss_pred             cccccCCCCCEECeEEEEecC
Confidence            578889999999999999976

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=97.02  E-value=0.0014  Score=46.88  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             EEEeeEEecCCCCcee-eeeEEEecCCCceeEEEEE
Q psy6105          44 RKKRTSVKKNSLNPFY-NEALLFDVPANPYVKVYLV   78 (194)
Q Consensus        44 ~~~~T~~~~~t~nP~w-~e~f~f~~~~dpyv~v~l~   78 (194)
                      .+.+|.++++|+||+| ||.|.|.+..+-.+.+.+.
T Consensus        45 ~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~   80 (137)
T cd08691          45 QECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVK   80 (137)
T ss_pred             ceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEE
Confidence            4789999999999999 9999998864445555554

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=97.01  E-value=0.00042  Score=49.33  Aligned_cols=23  Identities=48%  Similarity=0.986  Sum_probs=21.0

Q ss_pred             EeeEEecCCCCceeeeeEEEecC
Q psy6105          46 KRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        46 ~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      ++|+++++|+||.|||+|.|.++
T Consensus        53 ~kT~v~~~t~nP~wnE~F~f~i~   75 (135)
T cd08410          53 KKTSCMRGTIDPFYNESFSFKVP   75 (135)
T ss_pred             EcCccccCCCCCccceeEEEeCC
Confidence            55889999999999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=97.01  E-value=0.00051  Score=48.50  Aligned_cols=12  Identities=0%  Similarity=-0.186  Sum_probs=6.2

Q ss_pred             eEEEeeccCCCC
Q psy6105           8 SFRADNYCRPTI   19 (194)
Q Consensus         8 ~~r~~~~~a~~l   19 (194)
                      .++|++|.+.+.
T Consensus        22 Vi~a~~L~~~~~   33 (128)
T cd08388          22 IIECRDLPAMDE   33 (128)
T ss_pred             EEEeECCCCCCC
Confidence            345556655443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=96.99  E-value=0.001  Score=46.18  Aligned_cols=21  Identities=38%  Similarity=0.437  Sum_probs=18.5

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |.++++++||+|||.|.|.+.
T Consensus        43 T~vi~~t~nP~wne~f~f~~~   63 (120)
T cd04048          43 TEVIKNNLNPDFVTTFTVDYY   63 (120)
T ss_pred             EeEeCCCCCCCceEEEEEEEE
Confidence            678899999999999999754

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.99  E-value=0.0056  Score=43.95  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             CceeEEEEEcCCeEeE--EeeceeecCC-CCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCC----ceeEEEEeCC
Q psy6105          70 NPYVKVYLVCEGKRIR--KKRTSVKKNS-LNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSD----ELMGCTAIGS  141 (194)
Q Consensus        70 dpyv~v~l~~~~~~~~--~~kT~~~~~t-~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~----~~iG~~~i~l  141 (194)
                      +.||.+.+..++..+.  ...|.....+ ..+.|+|.+.|++...++ .++.|.|+||..+.....    ..||.+.+++
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            4578888876666555  3367766666 799999999999766555 357899999996655444    7999999999


Q ss_pred             CCC
Q psy6105         142 SFI  144 (194)
Q Consensus       142 ~~~  144 (194)
                      -..
T Consensus        83 Fd~   85 (142)
T PF00792_consen   83 FDY   85 (142)
T ss_dssp             B-T
T ss_pred             ECC
Confidence            764

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=96.96  E-value=0.0011  Score=46.35  Aligned_cols=30  Identities=17%  Similarity=0.249  Sum_probs=22.4

Q ss_pred             ecCCCCceeeeeEEEecC--CCceeEEEEEcC
Q psy6105          51 KKNSLNPFYNEALLFDVP--ANPYVKVYLVCE   80 (194)
Q Consensus        51 ~~~t~nP~w~e~f~f~~~--~dpyv~v~l~~~   80 (194)
                      +++|+||.|||.|.|.+.  .+..+.+.+.+.
T Consensus        35 ~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~   66 (121)
T cd08378          35 IERTSNPEWNQVFAFSKDRLQGSTLEVSVWDK   66 (121)
T ss_pred             cCCCCCCccceEEEEEcCCCcCCEEEEEEEeC
Confidence            467899999999999876  345666666543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.96  E-value=0.0026  Score=46.45  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=52.8

Q ss_pred             CCceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCC--CCceeEEEEeCCCCC
Q psy6105          69 ANPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG--SDELMGCTAIGSSFI  144 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~--~~~~iG~~~i~l~~~  144 (194)
                      .+.||.+.+..+++... ...|.......++.|||.+.|++...++ .++.|.|+||+.+..+  ....||.+.++|-..
T Consensus        28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            35677777775554322 3344433334679999999998766555 3578999999966543  467999999999764

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=96.93  E-value=0.00038  Score=49.39  Aligned_cols=24  Identities=42%  Similarity=0.818  Sum_probs=22.3

Q ss_pred             EEeeEEecCCCCceeeeeEEEecC
Q psy6105          45 KKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        45 ~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      +.+|+++++|+||+|||.|.|.+.
T Consensus        56 ~~kT~v~~~t~nP~wnE~f~f~i~   79 (133)
T cd04009          56 TPKTQVKKKTLFPLFDESFEFNVP   79 (133)
T ss_pred             ccccccCcCCCCCccCCEEEEEec
Confidence            588999999999999999999976

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=96.91  E-value=0.0016  Score=45.58  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=25.1

Q ss_pred             eEEecCCCCceeeeeEEEecCCCceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPANPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~   79 (194)
                      |.++++++||.|||.|.|.+..+.-+.+.+.+
T Consensus        37 T~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d   68 (123)
T cd08382          37 TDVAKKTLDPKWNEHFDLTVGPSSIITIQVFD   68 (123)
T ss_pred             ccEEcCCCCCcccceEEEEeCCCCEEEEEEEE
Confidence            56778899999999999998765555655543

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=96.90  E-value=0.00068  Score=46.41  Aligned_cols=12  Identities=50%  Similarity=0.899  Sum_probs=10.7

Q ss_pred             ceeeeeEEEecC
Q psy6105          57 PFYNEALLFDVP   68 (194)
Q Consensus        57 P~w~e~f~f~~~   68 (194)
                      |+|||.|.|.+.
T Consensus        50 PvWne~f~f~v~   61 (108)
T cd04039          50 PVFNERLAFEVY   61 (108)
T ss_pred             CcccceEEEEEe
Confidence            999999999864

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=96.90  E-value=0.00078  Score=46.20  Aligned_cols=12  Identities=25%  Similarity=0.495  Sum_probs=10.7

Q ss_pred             ceeeeeEEEecC
Q psy6105          57 PFYNEALLFDVP   68 (194)
Q Consensus        57 P~w~e~f~f~~~   68 (194)
                      |.|||.|.|.+.
T Consensus        50 P~Wne~f~f~~~   61 (111)
T cd04041          50 PVWEETWFVLVT   61 (111)
T ss_pred             CccceeEEEEeC
Confidence            999999999765

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=96.87  E-value=0.0024  Score=45.01  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=25.8

Q ss_pred             EEeeEEecCCCCceeeeeEEEecCC-CceeEEEEE
Q psy6105          45 KKRTSVKKNSLNPFYNEALLFDVPA-NPYVKVYLV   78 (194)
Q Consensus        45 ~~~T~~~~~t~nP~w~e~f~f~~~~-dpyv~v~l~   78 (194)
                      ..+|.++++|+||.|||+|.|.+.. +..+.+.+.
T Consensus        40 ~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~   74 (133)
T cd04033          40 SVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVF   74 (133)
T ss_pred             ceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEE
Confidence            4688999999999999999998763 333444443

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=96.87  E-value=0.002  Score=45.04  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=23.6

Q ss_pred             eEEecCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA--NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~   78 (194)
                      |+++++++||.|||.|.|.+..  +..+.+.+.
T Consensus        40 T~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~   72 (126)
T cd04043          40 TRTIYDTLNPRWDEEFELEVPAGEPLWISATVW   72 (126)
T ss_pred             ccEecCCCCCcccceEEEEcCCCCCCEEEEEEE
Confidence            5677889999999999999874  345555554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=96.87  E-value=0.00068  Score=47.35  Aligned_cols=21  Identities=38%  Similarity=0.933  Sum_probs=18.8

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++++||.|||+|.|.+.
T Consensus        55 T~v~~~t~~P~wne~f~f~v~   75 (124)
T cd08387          55 SKIHKKTLNPEFDESFVFEVP   75 (124)
T ss_pred             CceEcCCCCCCcccEEEEeCC
Confidence            567888999999999999977

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>KOG3837|consensus

Probab=96.86  E-value=0.00091  Score=55.33  Aligned_cols=106  Identities=16%  Similarity=0.270  Sum_probs=72.9

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCC---------CCCceEEEEEEecCC-CCCCceeEEEE
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASN---------VNDVSLIIKVIDYDR-IGSDELMGCTA  138 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~---------l~~~~l~i~V~d~~~-~~~~~~iG~~~  138 (194)
                      .|.|+++.+.-....-.+.+|.+++.+.+|.|+|.|..++....         +.+..+.|+|+++.. +.+|.++|.+.
T Consensus       388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n  467 (523)
T KOG3837|consen  388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN  467 (523)
T ss_pred             HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence            46788888863333445788999999999999999998875521         123478999999765 47899999999


Q ss_pred             eCCCCCCcchhhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeee
Q psy6105         139 IGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLS  189 (194)
Q Consensus       139 i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~  189 (194)
                      |.|.-+.           + .-.++..++|   ..|.++.-|-.++.|+|.
T Consensus       468 ikle~Le-----------n-~cei~e~~~l---~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  468 IKLEILE-----------N-MCEICEYLPL---KDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eeehhhh-----------c-ccchhhceec---cccccccCCeeEEEEEEe
Confidence            9986432           2 2233444444   445555556666666554

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=96.83  E-value=0.00071  Score=47.86  Aligned_cols=31  Identities=32%  Similarity=0.603  Sum_probs=23.3

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      |+++++++||.|||+|.|.+..    +..+.+.+.
T Consensus        54 T~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384          54 TQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             eeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            5678899999999999999873    234555554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd00030 C2 C2 domain

Probab=96.82  E-value=0.0019  Score=41.95  Aligned_cols=11  Identities=55%  Similarity=0.773  Sum_probs=8.9

Q ss_pred             CCceeEEEEEc
Q psy6105          69 ANPYVKVYLVC   79 (194)
Q Consensus        69 ~dpyv~v~l~~   79 (194)
                      .++|+.+.+.+
T Consensus        20 ~~~~v~v~~~~   30 (102)
T cd00030          20 SDPYVKVSLGG   30 (102)
T ss_pred             CCcEEEEEecc
Confidence            68999999864

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=96.79  E-value=0.0025  Score=44.98  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=18.1

Q ss_pred             CCceeeeeEEEecCCCceeEEEEE
Q psy6105          55 LNPFYNEALLFDVPANPYVKVYLV   78 (194)
Q Consensus        55 ~nP~w~e~f~f~~~~dpyv~v~l~   78 (194)
                      +||.|||+|.|.+..+..+.+.+.
T Consensus        58 ~~P~Wne~f~~~v~~~~~l~~~v~   81 (132)
T cd04014          58 NSPVWNEEFTTEVHNGRNLELTVF   81 (132)
T ss_pred             CCCCcceeEEEEcCCCCEEEEEEE
Confidence            799999999999875545555543

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=96.79  E-value=0.00077  Score=46.85  Aligned_cols=21  Identities=52%  Similarity=0.857  Sum_probs=18.5

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++++||.|||+|.|.+.
T Consensus        56 T~v~~~t~~P~wne~f~f~i~   76 (123)
T cd08521          56 TSVKKNTTNPVFNETLKYHIS   76 (123)
T ss_pred             ccccCCCCCCcccceEEEeCC
Confidence            456788999999999999977

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=96.78  E-value=0.00091  Score=47.57  Aligned_cols=22  Identities=55%  Similarity=1.056  Sum_probs=19.5

Q ss_pred             eeEEecCCCCceeeeeEEEecC
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      +|.++++|+||.|||+|.|.++
T Consensus        55 kT~v~k~t~nP~w~e~F~f~v~   76 (136)
T cd08404          55 KTHVKKCTLNPVFNESFVFDIP   76 (136)
T ss_pred             cCccccCCCCCccCceEEEECC
Confidence            3678889999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=96.77  E-value=0.0011  Score=46.02  Aligned_cols=21  Identities=33%  Similarity=0.744  Sum_probs=19.0

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++++||.|||.|.|.++
T Consensus        54 T~v~~~~~~P~wne~f~f~i~   74 (123)
T cd08390          54 SKVKRKTQNPNFDETFVFQVS   74 (123)
T ss_pred             eeeEcCCCCCccceEEEEEcC
Confidence            578889999999999999977

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=96.76  E-value=0.0009  Score=46.68  Aligned_cols=31  Identities=35%  Similarity=0.619  Sum_probs=23.4

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      |+++++++||.|||.|.|.+..    +-.+.+.+.
T Consensus        55 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~   89 (124)
T cd08385          55 TKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY   89 (124)
T ss_pred             cccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence            5677899999999999999762    334555554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=96.70  E-value=0.0013  Score=46.08  Aligned_cols=14  Identities=29%  Similarity=0.660  Sum_probs=12.6

Q ss_pred             CceeeeeEEEecCC
Q psy6105          56 NPFYNEALLFDVPA   69 (194)
Q Consensus        56 nP~w~e~f~f~~~~   69 (194)
                      ||+|||+|.|.+..
T Consensus        46 nP~WNe~F~f~v~~   59 (121)
T cd04016          46 NPRWNKTIQCTLPE   59 (121)
T ss_pred             CCccCeEEEEEecC
Confidence            89999999999863

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=96.69  E-value=0.00092  Score=45.33  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             ecCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105          51 KKNSLNPFYNEALLFDVPA--NPYVKVYLV   78 (194)
Q Consensus        51 ~~~t~nP~w~e~f~f~~~~--dpyv~v~l~   78 (194)
                      +++|.||.|||.|.|.+..  ...+.+.+.
T Consensus        39 ~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~   68 (105)
T cd04050          39 KERTNNPVWEEGFTFLVRNPENQELEIEVK   68 (105)
T ss_pred             ccCCCCCcccceEEEEeCCCCCCEEEEEEE
Confidence            3568999999999999873  234455544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=96.68  E-value=0.0035  Score=43.93  Aligned_cols=22  Identities=14%  Similarity=0.116  Sum_probs=15.4

Q ss_pred             eeeeeEEEecCCCceeEEEEEc
Q psy6105          58 FYNEALLFDVPANPYVKVYLVC   79 (194)
Q Consensus        58 ~w~e~f~f~~~~dpyv~v~l~~   79 (194)
                      .|||.|.|.+.....+.+.+.+
T Consensus        48 ~Wne~f~~~~~~~~~l~~~V~d   69 (125)
T cd04021          48 KWNEHFTVLVTPQSTLEFKVWS   69 (125)
T ss_pred             ccccEEEEEeCCCCEEEEEEEe
Confidence            6999999987755555555543

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=96.67  E-value=0.00077  Score=47.01  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.4

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++|+||.|||+|.|.+.
T Consensus        57 T~v~~~t~nP~wne~f~f~~~   77 (125)
T cd04031          57 TKTVKKTLNPEWNQTFEYSNV   77 (125)
T ss_pred             ccccCCCCCCccccEEEEccc
Confidence            578899999999999999853

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=96.65  E-value=0.001  Score=46.66  Aligned_cols=20  Identities=40%  Similarity=0.733  Sum_probs=16.3

Q ss_pred             eEEecCCCCceeeeeEEEe-cC
Q psy6105          48 TSVKKNSLNPFYNEALLFD-VP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~-~~   68 (194)
                      |+++++ +||+|||+|.|. +.
T Consensus        55 Tkv~~~-~nP~fnE~F~f~~i~   75 (124)
T cd08389          55 TKVQRG-PNPVFNETFTFSRVE   75 (124)
T ss_pred             cccccC-CCCcccCEEEECCCC
Confidence            355666 899999999998 65

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=96.62  E-value=0.0016  Score=45.35  Aligned_cols=13  Identities=15%  Similarity=0.056  Sum_probs=6.8

Q ss_pred             eEEEeeccCCCCC
Q psy6105           8 SFRADNYCRPTIG   20 (194)
Q Consensus         8 ~~r~~~~~a~~l~   20 (194)
                      -+++.++.+.+..
T Consensus         6 vi~a~~L~~~d~~   18 (121)
T cd04054           6 IVEGKNLPAKDIT   18 (121)
T ss_pred             EEEeeCCcCCCCC
Confidence            3455566555543

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=96.62  E-value=0.0013  Score=46.78  Aligned_cols=32  Identities=41%  Similarity=0.718  Sum_probs=23.9

Q ss_pred             eEEecCCCCceeeeeEEEecCCC----ceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPAN----PYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~~   79 (194)
                      |+++++++||.|||.|.|.+..+    ..+.+.+.+
T Consensus        56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            56788999999999999998622    245555553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.62  E-value=0.012  Score=43.05  Aligned_cols=75  Identities=16%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             CCceeEEEEEcCCeEe-EEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCC----CCceeEEEEeCCC
Q psy6105          69 ANPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG----SDELMGCTAIGSS  142 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~----~~~~iG~~~i~l~  142 (194)
                      ++.||++.+..++..+ ....|..+.. .++.|||.+.|++...++ .++.|.|+||+....+    ....||.+.+.|-
T Consensus        26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF  104 (158)
T cd08398          26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF  104 (158)
T ss_pred             CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence            4677887777655433 2334444443 679999999998876666 3578999999964321    2356999999987


Q ss_pred             CC
Q psy6105         143 FI  144 (194)
Q Consensus       143 ~~  144 (194)
                      ..
T Consensus       105 d~  106 (158)
T cd08398         105 DY  106 (158)
T ss_pred             CC
Confidence            64

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=96.61  E-value=0.0014  Score=45.96  Aligned_cols=11  Identities=9%  Similarity=-0.046  Sum_probs=5.4

Q ss_pred             EEEeeccCCCC
Q psy6105           9 FRADNYCRPTI   19 (194)
Q Consensus         9 ~r~~~~~a~~l   19 (194)
                      ++|+++-+.+.
T Consensus         7 i~A~~L~~~d~   17 (127)
T cd04022           7 VDAQDLMPKDG   17 (127)
T ss_pred             EEeeCCCCCCC
Confidence            44555554443

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=96.61  E-value=0.0011  Score=47.22  Aligned_cols=33  Identities=30%  Similarity=0.690  Sum_probs=24.6

Q ss_pred             eeEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      +|+++++++||.|||.|.|.++.    +..+.+.+.+
T Consensus        55 kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          55 KTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             cCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            46788899999999999999762    3345555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=96.60  E-value=0.0017  Score=45.15  Aligned_cols=25  Identities=16%  Similarity=0.347  Sum_probs=17.9

Q ss_pred             CCceeeeeEEEecCC-CceeEEEEEc
Q psy6105          55 LNPFYNEALLFDVPA-NPYVKVYLVC   79 (194)
Q Consensus        55 ~nP~w~e~f~f~~~~-dpyv~v~l~~   79 (194)
                      +||.|||.|.|.+.. +..+.+.+.+
T Consensus        44 ~nP~Wne~f~f~v~~~~~~l~~~v~D   69 (121)
T cd04042          44 LNPVWDEKFTLPIEDVTQPLYIKVFD   69 (121)
T ss_pred             CCCccceeEEEEecCCCCeEEEEEEe
Confidence            799999999998752 3445555543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=96.58  E-value=0.0017  Score=45.50  Aligned_cols=26  Identities=27%  Similarity=0.568  Sum_probs=18.4

Q ss_pred             CCCCceeeeeEEEecCC-CceeEEEEE
Q psy6105          53 NSLNPFYNEALLFDVPA-NPYVKVYLV   78 (194)
Q Consensus        53 ~t~nP~w~e~f~f~~~~-dpyv~v~l~   78 (194)
                      +|+||.|||.|.|.+.. +--+.+.+.
T Consensus        40 ~t~nP~Wne~f~f~~~~~~~~l~~~v~   66 (126)
T cd08678          40 NTSNPFWDEHFLFELSPNSKELLFEVY   66 (126)
T ss_pred             cCCCCccCceEEEEeCCCCCEEEEEEE
Confidence            57999999999998863 223444444

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=96.58  E-value=0.0015  Score=47.59  Aligned_cols=68  Identities=32%  Similarity=0.455  Sum_probs=52.1

Q ss_pred             eeEEEeeccCCCCCC---------CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC---CCceeE
Q psy6105           7 RSFRADNYCRPTIGN---------RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP---ANPYVK   74 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~---------~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~---~dpyv~   74 (194)
                      +.++|+.|.+.+.-.         .+..+.+||||+|.+.+.     +.+|+++++++||+|||+|.|.+.   .+-.+.
T Consensus         5 ~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~-----~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~   79 (151)
T cd04018           5 KIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQ-----KVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK   79 (151)
T ss_pred             EEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCE-----eeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence            467888888877543         366789999999998754     568999999999999999999854   233455


Q ss_pred             EEEEc
Q psy6105          75 VYLVC   79 (194)
Q Consensus        75 v~l~~   79 (194)
                      +.+.+
T Consensus        80 ~~v~D   84 (151)
T cd04018          80 IQIRD   84 (151)
T ss_pred             EEEEE
Confidence            55543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.58  E-value=0.013  Score=43.67  Aligned_cols=91  Identities=16%  Similarity=0.205  Sum_probs=59.0

Q ss_pred             CceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCC----------------CC
Q psy6105          70 NPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG----------------SD  131 (194)
Q Consensus        70 dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~----------------~~  131 (194)
                      +.||++.+..++..+. ...|..+.....+.|||.+.|++...++ .++.|.|+||+.....                ..
T Consensus        28 ~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~  107 (173)
T cd08693          28 KVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDD  107 (173)
T ss_pred             eEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcc
Confidence            4677776665544332 3455555555679999999998877666 3578999999854321                24


Q ss_pred             ceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105         132 ELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus       132 ~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      ..||.+.+.|-...       ..|..-......|-.
T Consensus       108 ~~ig~~n~~LFd~~-------~~Lr~G~~~L~lW~~  136 (173)
T cd08693         108 NPIAWVNTMVFDYK-------GQLKTGDHTLYMWTY  136 (173)
T ss_pred             eEEEEEeEEEEccc-------chhhcCCeEEEecCC
Confidence            68999999887643       234343444556743

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=96.56  E-value=0.0021  Score=47.12  Aligned_cols=57  Identities=30%  Similarity=0.373  Sum_probs=49.5

Q ss_pred             eEEEeeccCCCCCCCC------------------------------CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCc
Q psy6105           8 SFRADNYCRPTIGNRS------------------------------IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNP   57 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d------------------------------~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP   57 (194)
                      .|++.++.|++|+.+|                              ..|.+||||+|.+...    ...+|++++++.||
T Consensus         8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~----~~~rT~v~~~~~nP   83 (158)
T cd04015           8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA----RVARTRVIENSENP   83 (158)
T ss_pred             eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe----EeeEEEEeCCCCCC
Confidence            4789999999999998                              3567999999999753    25799999999999


Q ss_pred             eeeeeEEEecC
Q psy6105          58 FYNEALLFDVP   68 (194)
Q Consensus        58 ~w~e~f~f~~~   68 (194)
                      .|||.|.|.+.
T Consensus        84 ~WnE~F~~~~~   94 (158)
T cd04015          84 VWNESFHIYCA   94 (158)
T ss_pred             ccceEEEEEcc
Confidence            99999999865

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=96.55  E-value=0.0017  Score=45.36  Aligned_cols=10  Identities=10%  Similarity=0.029  Sum_probs=4.6

Q ss_pred             EEEeeccCCC
Q psy6105           9 FRADNYCRPT   18 (194)
Q Consensus         9 ~r~~~~~a~~   18 (194)
                      ++|++|...+
T Consensus        23 ~~a~~L~~~d   32 (125)
T cd08386          23 LKAVELPAKD   32 (125)
T ss_pred             EEecCCCCcc
Confidence            4455554433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=96.52  E-value=0.0017  Score=44.72  Aligned_cols=10  Identities=10%  Similarity=-0.034  Sum_probs=5.2

Q ss_pred             EEEeeccCCC
Q psy6105           9 FRADNYCRPT   18 (194)
Q Consensus         9 ~r~~~~~a~~   18 (194)
                      ++|++|.+.+
T Consensus         7 ~~a~~L~~~~   16 (116)
T cd08376           7 VEGKNLPPMD   16 (116)
T ss_pred             EEEECCCCCC
Confidence            4555555544

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=96.50  E-value=0.0048  Score=44.54  Aligned_cols=12  Identities=17%  Similarity=0.188  Sum_probs=7.2

Q ss_pred             eEEEeeccCCCC
Q psy6105           8 SFRADNYCRPTI   19 (194)
Q Consensus         8 ~~r~~~~~a~~l   19 (194)
                      -+++.+|.+++.
T Consensus         8 Vi~a~nL~~~d~   19 (145)
T cd04038           8 VVRGTNLAVRDF   19 (145)
T ss_pred             EEeeECCCCCCC
Confidence            356666666555

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>KOG0696|consensus

Probab=96.48  E-value=0.00071  Score=56.49  Aligned_cols=23  Identities=35%  Similarity=0.668  Sum_probs=21.3

Q ss_pred             EeeEEecCCCCceeeeeEEEecC
Q psy6105          46 KRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        46 ~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      ++|++++.|+||+|||+|.|.+.
T Consensus       219 qKTkTik~~LNP~wNEtftf~Lk  241 (683)
T KOG0696|consen  219 QKTKTIKATLNPVWNETFTFKLK  241 (683)
T ss_pred             hhhhhhhhhcCccccceeEEecc
Confidence            67999999999999999999876

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=96.46  E-value=0.0017  Score=46.03  Aligned_cols=33  Identities=58%  Similarity=0.827  Sum_probs=24.0

Q ss_pred             eeEEecCCCCceeeeeEEEecCCC----ceeEEEEEc
Q psy6105          47 RTSVKKNSLNPFYNEALLFDVPAN----PYVKVYLVC   79 (194)
Q Consensus        47 ~T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~~   79 (194)
                      +|+++++++||.|||.|.|.+..+    ..+.+.+.+
T Consensus        54 kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          54 KTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             cCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            466788999999999999988632    234555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=96.44  E-value=0.0014  Score=48.18  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=23.8

Q ss_pred             eEEecCCCCceeeeeEEEecC-----CCceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~~   79 (194)
                      |+++++|+||.|||.|.|.+.     .+..+++.+.+
T Consensus        68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            678899999999999999742     23345665543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=96.44  E-value=0.0022  Score=44.66  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=14.0

Q ss_pred             eeeeEEEecCC--CceeEEEEEc
Q psy6105          59 YNEALLFDVPA--NPYVKVYLVC   79 (194)
Q Consensus        59 w~e~f~f~~~~--dpyv~v~l~~   79 (194)
                      |||+|.|.+..  +..+.+.+.+
T Consensus        47 Wne~f~f~~~~~~~~~l~~~v~d   69 (123)
T cd04025          47 WNEVFEFELMEGADSPLSVEVWD   69 (123)
T ss_pred             cCcEEEEEcCCCCCCEEEEEEEE
Confidence            89999998763  3445555543

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.42  E-value=0.044  Score=39.88  Aligned_cols=96  Identities=21%  Similarity=0.288  Sum_probs=62.4

Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCC-----------CceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHH
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVN-----------DVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLE  153 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~-----------~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~  153 (194)
                      ++.+|+.+..+.+|.|+|.|.|++..+...           ...|.|.|..-|..+...++|.-.++          |..
T Consensus        45 QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~  114 (156)
T PF15627_consen   45 QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLD----------WRK  114 (156)
T ss_pred             ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceeh----------HHH
Confidence            388999999999999999999998765421           23677777665655555566665443          778


Q ss_pred             HhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         154 MLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       154 ~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      +|..+......=-.|.+...+.+-..|-.++.  |+=+|
T Consensus       115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~--lELlP  151 (156)
T PF15627_consen  115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLR--LELLP  151 (156)
T ss_pred             HhccCCCccceeEEEeccCCCCccceeEEEEE--EEeec
Confidence            88887654444445666555554444444443  44444

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=96.36  E-value=0.0052  Score=44.77  Aligned_cols=35  Identities=34%  Similarity=0.501  Sum_probs=26.6

Q ss_pred             EEEeeEEecCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105          44 RKKRTSVKKNSLNPFYNEALLFDVPA--NPYVKVYLV   78 (194)
Q Consensus        44 ~~~~T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~   78 (194)
                      ...+|.++++|+||.|||+|.|.+..  +..+.+.+.
T Consensus        89 ~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~  125 (153)
T cd08676          89 SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIW  125 (153)
T ss_pred             ccEecceecCCCCCccccEEEEEeccCCCCEEEEEEE
Confidence            36889999999999999999998752  334444443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=96.34  E-value=0.0055  Score=42.30  Aligned_cols=9  Identities=11%  Similarity=0.213  Sum_probs=3.8

Q ss_pred             EEEeeccCC
Q psy6105           9 FRADNYCRP   17 (194)
Q Consensus         9 ~r~~~~~a~   17 (194)
                      ++|++|.+.
T Consensus         8 ~~a~~L~~~   16 (121)
T cd08391           8 IEAQDLVAK   16 (121)
T ss_pred             EEccCCccc
Confidence            344444443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>KOG1265|consensus

Probab=96.33  E-value=0.0036  Score=56.34  Aligned_cols=76  Identities=26%  Similarity=0.381  Sum_probs=57.2

Q ss_pred             CCceeEEEEEcCCe--EeEEeeceeec-CCCCCcccc-eEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105          69 ANPYVKVYLVCEGK--RIRKKRTSVKK-NSLNPFYNE-ALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSF  143 (194)
Q Consensus        69 ~dpyv~v~l~~~~~--~~~~~kT~~~~-~t~nP~~~e-~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~  143 (194)
                      ...||.|.+.+-+.  ..+..+|+++. +++||+|+| .|.|. |-.+++  +.|.|.||+.+    ..+||+-.++++.
T Consensus       720 vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiavyeEg----gK~ig~RIlpvd~  793 (1189)
T KOG1265|consen  720 VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAVYEEG----GKFIGQRILPVDG  793 (1189)
T ss_pred             cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeeeeccC----Cceeeeeccchhc
Confidence            56899999975443  22456677665 689999996 58886 444555  58999999743    4699999999999


Q ss_pred             CCcchhh
Q psy6105         144 IGIGRDH  150 (194)
Q Consensus       144 ~~~~~~~  150 (194)
                      +..|+.|
T Consensus       794 l~~GYrh  800 (1189)
T KOG1265|consen  794 LNAGYRH  800 (1189)
T ss_pred             ccCccee
Confidence            9888876

>cd04032 C2_Perforin C2 domain of Perforin

Probab=96.32  E-value=0.0021  Score=45.40  Aligned_cols=31  Identities=23%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             eEEecCCCCceeeeeEEEec-C--CCceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDV-P--ANPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~-~--~dpyv~v~l~   78 (194)
                      |+++++++||+|||+|.|.. .  .+-.+++.+.
T Consensus        63 T~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~   96 (127)
T cd04032          63 TEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVW   96 (127)
T ss_pred             CceecCCCCCcCCCEEEEecccCCCCCEEEEEEE
Confidence            67889999999999999963 2  2345555554

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=96.28  E-value=0.0024  Score=45.59  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=18.6

Q ss_pred             CCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105          53 NSLNPFYNEALLFDVPA--NPYVKVYLV   78 (194)
Q Consensus        53 ~t~nP~w~e~f~f~~~~--dpyv~v~l~   78 (194)
                      +|+||.|||.|.|.+..  +..+.+.+.
T Consensus        56 ~t~nP~Wne~f~f~v~~~~~~~l~i~V~   83 (136)
T cd08375          56 DTLNPKWNSSMQFFVKDLEQDVLCITVF   83 (136)
T ss_pred             CCCCCccCceEEEEecCccCCEEEEEEE
Confidence            57999999999998752  334455554

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=96.26  E-value=0.0031  Score=43.13  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=23.8

Q ss_pred             eEEecCCCCcee-eeeEEEecCC----CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFY-NEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w-~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      |+++++++||.| ||.|.|.+..    +-.+.+.+.+
T Consensus        36 T~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d   72 (110)
T cd08688          36 TDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMD   72 (110)
T ss_pred             cceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEe
Confidence            467788999999 9999999873    2355555543

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=96.19  E-value=0.007  Score=42.23  Aligned_cols=10  Identities=10%  Similarity=0.165  Sum_probs=4.6

Q ss_pred             EEEeeccCCC
Q psy6105           9 FRADNYCRPT   18 (194)
Q Consensus         9 ~r~~~~~a~~   18 (194)
                      ++|++|.+.+
T Consensus         8 ~~a~~L~~~~   17 (128)
T cd04024           8 VEAKDLAAKD   17 (128)
T ss_pred             EEeeCCCccc
Confidence            4445554433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.15  E-value=0.051  Score=40.31  Aligned_cols=48  Identities=13%  Similarity=0.244  Sum_probs=37.1

Q ss_pred             CCcccceEEEEecCCCC-CCceEEEEEEecCCCC---------CCceeEEEEeCCCCC
Q psy6105          97 NPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG---------SDELMGCTAIGSSFI  144 (194)
Q Consensus        97 nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~---------~~~~iG~~~i~l~~~  144 (194)
                      .+.|||.+.|++...++ .++.|.|+||+....+         ....||.+.++|-..
T Consensus        62 ~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          62 RVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             cccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            46799999998766555 3578999999865443         457899999999764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=96.14  E-value=0.0036  Score=43.86  Aligned_cols=29  Identities=21%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             ecCCCCceeeeeEEEecC----CCceeEEEEEc
Q psy6105          51 KKNSLNPFYNEALLFDVP----ANPYVKVYLVC   79 (194)
Q Consensus        51 ~~~t~nP~w~e~f~f~~~----~dpyv~v~l~~   79 (194)
                      ++++.||.|||.|.|.+.    .+-.+.+.+.+
T Consensus        33 ~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d   65 (127)
T cd08373          33 LENELNPVWNETFEWPLAGSPDPDESLEIVVKD   65 (127)
T ss_pred             eCCCcCCcccceEEEEeCCCcCCCCEEEEEEEE
Confidence            456789999999999875    23455555543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.13  E-value=0.023  Score=42.46  Aligned_cols=74  Identities=15%  Similarity=0.122  Sum_probs=51.8

Q ss_pred             ceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCC-CceEEEEEEecCCCC----------------CCce
Q psy6105          71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVN-DVSLIIKVIDYDRIG----------------SDEL  133 (194)
Q Consensus        71 pyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~-~~~l~i~V~d~~~~~----------------~~~~  133 (194)
                      .||++.+..++......+|.....+.++.|||.+.|++...++. ++.|.|+||+....+                .+..
T Consensus        32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (178)
T cd08399          32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQL  111 (178)
T ss_pred             EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccccccccccccce
Confidence            67777666655544455666666677899999999998776663 578999999852211                2557


Q ss_pred             eEEEEeCCCCC
Q psy6105         134 MGCTAIGSSFI  144 (194)
Q Consensus       134 iG~~~i~l~~~  144 (194)
                      ||-+.+.|-..
T Consensus       112 l~wvn~~LFD~  122 (178)
T cd08399         112 LYYVNLLLIDH  122 (178)
T ss_pred             EEEEEEEEEcC
Confidence            78888887653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=96.12  E-value=0.0051  Score=43.25  Aligned_cols=32  Identities=53%  Similarity=0.753  Sum_probs=23.7

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      |++++++.||.|||+|.|.+..    ...+++.+.+
T Consensus        55 T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d   90 (134)
T cd00276          55 TSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD   90 (134)
T ss_pred             CcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence            3566788999999999999873    2456666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=96.07  E-value=0.0044  Score=43.36  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=18.2

Q ss_pred             CCCCceeeeeEEEecC--CCceeEEEEE
Q psy6105          53 NSLNPFYNEALLFDVP--ANPYVKVYLV   78 (194)
Q Consensus        53 ~t~nP~w~e~f~f~~~--~dpyv~v~l~   78 (194)
                      +|+||.|||.|.|.+.  .+..+.+.+.
T Consensus        43 ~t~nP~Wne~f~f~~~~~~~~~L~~~V~   70 (124)
T cd04037          43 NTLNPVFGKMFELEATLPGNSILKISVM   70 (124)
T ss_pred             CCCCCccceEEEEEecCCCCCEEEEEEE
Confidence            4799999999999754  2334555554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=96.04  E-value=0.0056  Score=42.42  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=15.2

Q ss_pred             ceeeeeEEEecCC-CceeEEEEE
Q psy6105          57 PFYNEALLFDVPA-NPYVKVYLV   78 (194)
Q Consensus        57 P~w~e~f~f~~~~-dpyv~v~l~   78 (194)
                      |.|||.|.|.+.. +-.+.+.+.
T Consensus        50 P~Wne~~~~~v~~~~~~l~~~v~   72 (124)
T cd04044          50 PVWNETKYILVNSLTEPLNLTVY   72 (124)
T ss_pred             CcceEEEEEEeCCCCCEEEEEEE
Confidence            8999999998762 334455544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.99  E-value=0.027  Score=42.34  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=48.5

Q ss_pred             eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC-C-CceeEEEEeCCCC
Q psy6105          84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG-S-DELMGCTAIGSSF  143 (194)
Q Consensus        84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~-~-~~~iG~~~i~l~~  143 (194)
                      ...++|.+...+.+|.|+|++-+.++.+......|.+++++...-. + ...+|.+.++|-.
T Consensus        52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            4567888889899999999999999999988899999998843221 1 2579999999854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=95.95  E-value=0.005  Score=42.28  Aligned_cols=15  Identities=53%  Similarity=1.132  Sum_probs=13.5

Q ss_pred             CCceeeeeEEEecCC
Q psy6105          55 LNPFYNEALLFDVPA   69 (194)
Q Consensus        55 ~nP~w~e~f~f~~~~   69 (194)
                      +||.|||+|.|.+..
T Consensus        40 ~~P~Wne~f~f~v~~   54 (117)
T cd08383          40 LNPFWGEEFVFDDPP   54 (117)
T ss_pred             CCCcccceEEEecCC
Confidence            899999999999873

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.94  E-value=0.032  Score=45.83  Aligned_cols=91  Identities=14%  Similarity=0.298  Sum_probs=64.2

Q ss_pred             ceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecC-----CCCCCceEEEEEEecC-CCCCCceeEEEEeCCCCC
Q psy6105          71 PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA-----SNVNDVSLIIKVIDYD-RIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        71 pyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~-----~~l~~~~l~i~V~d~~-~~~~~~~iG~~~i~l~~~  144 (194)
                      .++...+.+.     .-.|..+..+-.|.||..+.+++..     -.++...|+++.|..+ ..+..+.||.+.++|.+.
T Consensus        20 ~vv~a~~ng~-----~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   20 IVVEAKFNGE-----SLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSA   94 (340)
T ss_pred             EEEEEEeCCc-----eeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccc
Confidence            3455555443     6677778888999999999997533     2345678999999877 557889999999999765


Q ss_pred             CcchhhHHHHhhCCCCceEeEEEccCCCC
Q psy6105         145 GIGRDHWLEMLDNPRQPVTQWYPLMETVP  173 (194)
Q Consensus       145 ~~~~~~W~~~l~~p~~~~~~W~~L~~~~~  173 (194)
                       - ..+     ..+.....+||+|.+...
T Consensus        95 -~-~~~-----~~~~~~~~~W~~LL~~~~  116 (340)
T PF12416_consen   95 -V-VPQ-----EKNQKQKPKWYKLLSSSS  116 (340)
T ss_pred             -c-ccc-----ccccccCCCeeEcccccc
Confidence             0 000     111246679999999743

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=95.93  E-value=0.01  Score=40.81  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=18.0

Q ss_pred             CCceeeeeEEEecCC--CceeEEEEEc
Q psy6105          55 LNPFYNEALLFDVPA--NPYVKVYLVC   79 (194)
Q Consensus        55 ~nP~w~e~f~f~~~~--dpyv~v~l~~   79 (194)
                      +||.|||.|.|.+..  +..+.+.+.+
T Consensus        45 ~nP~Wne~f~f~v~~~~~~~l~i~v~d   71 (118)
T cd08681          45 QHPEWDEELRFEITEDKKPILKVAVFD   71 (118)
T ss_pred             CCCccCceEEEEecCCCCCEEEEEEEe
Confidence            599999999999874  3345555543

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=95.93  E-value=0.005  Score=44.73  Aligned_cols=12  Identities=42%  Similarity=0.766  Sum_probs=10.9

Q ss_pred             ceeeeeEEEecC
Q psy6105          57 PFYNEALLFDVP   68 (194)
Q Consensus        57 P~w~e~f~f~~~   68 (194)
                      |.|||.|.|.+.
T Consensus        46 P~WNE~F~f~v~   57 (150)
T cd04019          46 PSWNEELMFVAA   57 (150)
T ss_pred             CcccCcEEEEec
Confidence            899999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=95.92  E-value=0.0046  Score=43.35  Aligned_cols=13  Identities=15%  Similarity=0.342  Sum_probs=6.8

Q ss_pred             CCceeEEEEeCCC
Q psy6105         130 SDELMGCTAIGSS  142 (194)
Q Consensus       130 ~~~~iG~~~i~l~  142 (194)
                      +....|.+.+.+.
T Consensus       108 ~~~~~G~i~~~~~  120 (126)
T cd04046         108 AGEVPGTISVKVT  120 (126)
T ss_pred             CCCCCCEEEEEEE
Confidence            3445566655543

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=95.91  E-value=0.0061  Score=43.26  Aligned_cols=10  Identities=10%  Similarity=0.305  Sum_probs=4.3

Q ss_pred             EEEeeccCCC
Q psy6105           9 FRADNYCRPT   18 (194)
Q Consensus         9 ~r~~~~~a~~   18 (194)
                      ++|+++.+.+
T Consensus         8 ~~a~~L~~~d   17 (135)
T cd04017           8 YQARDLLAAD   17 (135)
T ss_pred             EEeecCcCCC
Confidence            3444444433

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=95.88  E-value=0.0053  Score=42.71  Aligned_cols=32  Identities=19%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             eEEecCCCCceeeeeEEEe-cC----CCceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFD-VP----ANPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~-~~----~dpyv~v~l~~   79 (194)
                      |+++++++||.|||.|.|. +.    .+-.+.+.+.+
T Consensus        56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            4677899999999999995 33    13456666643

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=95.87  E-value=0.0061  Score=42.90  Aligned_cols=31  Identities=29%  Similarity=0.522  Sum_probs=22.5

Q ss_pred             eEEecCCCCceeeeeEEEecCC---CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA---NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~---dpyv~v~l~   78 (194)
                      |++++++.||.|||+|.|.+..   +..+.+.+.
T Consensus        54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~   87 (131)
T cd04026          54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVW   87 (131)
T ss_pred             ceeecCCCCCCccceEEEeCCchhcCCEEEEEEE
Confidence            5677889999999999998762   234555443

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=95.87  E-value=0.0056  Score=42.18  Aligned_cols=10  Identities=20%  Similarity=0.594  Sum_probs=8.3

Q ss_pred             eeeeEEEecC
Q psy6105          59 YNEALLFDVP   68 (194)
Q Consensus        59 w~e~f~f~~~   68 (194)
                      |||+|.|.+.
T Consensus        48 W~e~f~~~~~   57 (119)
T cd08377          48 WNKIFTFPIK   57 (119)
T ss_pred             cCcEEEEEec
Confidence            8999998865

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=95.84  E-value=0.0063  Score=42.73  Aligned_cols=7  Identities=14%  Similarity=0.434  Sum_probs=3.2

Q ss_pred             eeEEEEe
Q psy6105         133 LMGCTAI  139 (194)
Q Consensus       133 ~iG~~~i  139 (194)
                      .-|.+.+
T Consensus       119 ~~G~i~~  125 (127)
T cd04027         119 VSGAIRL  125 (127)
T ss_pred             EeEEEEE
Confidence            4455443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=95.77  E-value=0.033  Score=37.48  Aligned_cols=58  Identities=26%  Similarity=0.316  Sum_probs=41.3

Q ss_pred             CCceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecC
Q psy6105          69 ANPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYD  126 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~  126 (194)
                      ++.||.+.+..++..+. ...|..+.....+.|||.+.|++...++ .++.|.|+||+..
T Consensus        32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            36888888876555433 3455555556668999999998776665 3578999999853

Outlier of C2 family.

>KOG2060|consensus

Probab=95.60  E-value=0.029  Score=46.08  Aligned_cols=73  Identities=26%  Similarity=0.425  Sum_probs=57.6

Q ss_pred             eeEEEeeccCCCCCCCCCCC-CCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-CCceeEEEEEc
Q psy6105           7 RSFRADNYCRPTIGNRSIPS-VADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-ANPYVKVYLVC   79 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g-~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-~dpyv~v~l~~   79 (194)
                      -.+-+....|++|..+...+ .++|||+|++++.+.-..+.+|+...+|+.|.|.+...|.-. ..-|..+...+
T Consensus       269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g  343 (405)
T KOG2060|consen  269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG  343 (405)
T ss_pred             CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence            35667788889998776544 689999999999877778899999999999999998888643 44566666553

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=95.58  E-value=0.0096  Score=41.76  Aligned_cols=14  Identities=36%  Similarity=0.669  Sum_probs=12.3

Q ss_pred             CCceeeeeEEEecC
Q psy6105          55 LNPFYNEALLFDVP   68 (194)
Q Consensus        55 ~nP~w~e~f~f~~~   68 (194)
                      +||.|||.|.|.+.
T Consensus        44 ~nP~WnE~f~f~~~   57 (126)
T cd08400          44 PNPVWSEEFVFDDL   57 (126)
T ss_pred             CCCccCCEEEEecC
Confidence            69999999999854

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=95.57  E-value=0.027  Score=36.57  Aligned_cols=32  Identities=38%  Similarity=0.585  Sum_probs=24.0

Q ss_pred             eEEecCCCCceeeeeEEEecCC--CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA--NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~~   79 (194)
                      |+++.++.||.|||.|.|.+..  ...+.+.+.+
T Consensus        39 T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~   72 (101)
T smart00239       39 TKVVKNTLNPVWNETFEFEVPPPELAELEIEVYD   72 (101)
T ss_pred             eeEecCCCCCcccceEEEEecCcccCEEEEEEEe
Confidence            4566777899999999999875  5666666543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=95.56  E-value=0.0093  Score=40.84  Aligned_cols=27  Identities=37%  Similarity=0.620  Sum_probs=18.7

Q ss_pred             cCCCCceeeeeEEEecCC--CceeEEEEE
Q psy6105          52 KNSLNPFYNEALLFDVPA--NPYVKVYLV   78 (194)
Q Consensus        52 ~~t~nP~w~e~f~f~~~~--dpyv~v~l~   78 (194)
                      .++.||.|||.|.|.+..  +..+.+.+.
T Consensus        40 ~~~~~P~Wne~f~~~~~~~~~~~l~~~v~   68 (115)
T cd04040          40 KKTLNPVWNESFEVPVPSRVRAVLKVEVY   68 (115)
T ss_pred             cCCCCCcccccEEEEeccCCCCEEEEEEE
Confidence            358999999999998763  233444443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=95.56  E-value=0.058  Score=40.74  Aligned_cols=61  Identities=10%  Similarity=0.127  Sum_probs=48.8

Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-C---CCceeEEEEeCCC
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-G---SDELMGCTAIGSS  142 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-~---~~~~iG~~~i~l~  142 (194)
                      .....++|.+...+.+|.|+|++-..++.+......|.+++++...- .   ....+|...++|-
T Consensus        50 ~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          50 EPIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             CcceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            34567888888889999999999999999998899999999884321 1   2246899888885

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=95.39  E-value=0.016  Score=36.77  Aligned_cols=31  Identities=32%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             eEEecCCCCceeeeeEEEecC--CCceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP--ANPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~--~dpyv~v~l~   78 (194)
                      |++++++.+|.|+|.|.|.+.  ....+.+.+.
T Consensus        38 T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~   70 (85)
T PF00168_consen   38 TKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVW   70 (85)
T ss_dssp             ECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEE
T ss_pred             eeeeeccccceeeeeeeeeeecccccceEEEEE
Confidence            567788899999999999965  2223555554

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.30  E-value=0.067  Score=40.11  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=39.4

Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC-C--CceeEEEEeCCCCC
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG-S--DELMGCTAIGSSFI  144 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~-~--~~~iG~~~i~l~~~  144 (194)
                      ....|.+...+.+|.|+|+|-+.++.....+..|.+++++...-. +  ...+|.+.++|-..
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~  121 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDN  121 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-T
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeC
Confidence            467778888889999999999999988878889999999943321 2  26899999999763

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=95.18  E-value=0.017  Score=40.72  Aligned_cols=14  Identities=14%  Similarity=0.679  Sum_probs=12.4

Q ss_pred             CCceeeeeEEEecC
Q psy6105          55 LNPFYNEALLFDVP   68 (194)
Q Consensus        55 ~nP~w~e~f~f~~~   68 (194)
                      .||.|||.|.|.+.
T Consensus        41 ~nP~WnE~F~F~~~   54 (127)
T cd08394          41 SQPCWEQDFMFEIN   54 (127)
T ss_pred             CCCceeeEEEEEEc
Confidence            49999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=94.68  E-value=0.021  Score=39.69  Aligned_cols=34  Identities=35%  Similarity=0.561  Sum_probs=24.5

Q ss_pred             EEeeEEecCCC-CceeeeeEEEecCCC--ceeEEEEE
Q psy6105          45 KKRTSVKKNSL-NPFYNEALLFDVPAN--PYVKVYLV   78 (194)
Q Consensus        45 ~~~T~~~~~t~-nP~w~e~f~f~~~~d--pyv~v~l~   78 (194)
                      +.+|.++.++. ||.|||.|.|.+...  .++++.+.
T Consensus        43 ~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~   79 (128)
T cd00275          43 KFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVY   79 (128)
T ss_pred             cEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEE
Confidence            68888887775 999999999986522  23445443

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=94.52  E-value=0.068  Score=53.14  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             EeeEEecCCCCceeeeeEEEecC
Q psy6105          46 KRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        46 ~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      +||++++++.||.|||.|+|.+.
T Consensus      2013 ~kTkvvk~~~nP~Wne~f~~~~~ 2035 (2102)
T PLN03200       2013 RQTKVVSHSSSPEWKEGFTWAFD 2035 (2102)
T ss_pred             ccccccCCCCCCCcccceeeeec
Confidence            03799999999999999997665

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=93.65  E-value=0.041  Score=38.27  Aligned_cols=18  Identities=33%  Similarity=0.565  Sum_probs=15.2

Q ss_pred             cCCCCceeeeeEEEecCC
Q psy6105          52 KNSLNPFYNEALLFDVPA   69 (194)
Q Consensus        52 ~~t~nP~w~e~f~f~~~~   69 (194)
                      .++.||.|||.|.|.+..
T Consensus        42 ~~~~~P~Wne~f~f~v~~   59 (125)
T cd04051          42 DGGTNPTWNETLRFPLDE   59 (125)
T ss_pred             CCCCCCCCCCEEEEEcCh
Confidence            347999999999999873

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>KOG1327|consensus

Probab=93.47  E-value=0.13  Score=44.49  Aligned_cols=54  Identities=26%  Similarity=0.353  Sum_probs=44.3

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEE-cCCeEeEEEeeEEecCCCCceeeee
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEA   62 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~-~~~~~~~~~~T~~~~~t~nP~w~e~   62 (194)
                      ...-..+|++|..+|..+++|||..++-. .++......+|.++++|+||.|-+.
T Consensus       138 ~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~  192 (529)
T KOG1327|consen  138 VVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF  192 (529)
T ss_pred             eeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc
Confidence            33455678999999999999999987755 4566777899999999999999643

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=93.45  E-value=1.2  Score=31.62  Aligned_cols=82  Identities=18%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             CCCCcccceEEEEecC------CCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEEc
Q psy6105          95 SLNPFYNEALLFDVPA------SNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL  168 (194)
Q Consensus        95 t~nP~~~e~f~f~v~~------~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~L  168 (194)
                      +..-.|+|.|.+.+..      ..+....+.|.|+....-++...+|.+.|+|.+.          ..........=++|
T Consensus        49 ~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey----------~~~~~~~~~~~~~l  118 (143)
T PF10358_consen   49 NGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEY----------ANEDEEPITVRLLL  118 (143)
T ss_pred             ccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHh----------hCcCCCcEEEEEeC
Confidence            4456999999887422      1255667889998864333336999999999854          22224566677788


Q ss_pred             cCCCCCCccccCCCCcceeeeecC
Q psy6105         169 METVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      ...+..      ...|.++|++..
T Consensus       119 ~~~~~~------~a~L~isi~~~~  136 (143)
T PF10358_consen  119 KKCKKS------NATLSISISLSE  136 (143)
T ss_pred             ccCCCC------CcEEEEEEEEEE
Confidence            776221      224555565543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=93.27  E-value=0.031  Score=36.65  Aligned_cols=54  Identities=17%  Similarity=0.119  Sum_probs=37.2

Q ss_pred             eccCCCC-CCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105          13 NYCRPTI-GNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        13 ~~~a~~l-~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      ++.+++| .+...+.....|++--+.-.  +--..+|.++++..||+|.|+|.|.+.
T Consensus         5 v~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFqi~   59 (103)
T cd08684           5 VLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFAIK   59 (103)
T ss_pred             EEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHHHH
Confidence            3444444 44455556667887444321  223799999999999999999999876

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=92.93  E-value=0.52  Score=35.11  Aligned_cols=56  Identities=18%  Similarity=0.200  Sum_probs=42.5

Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCC-----CCCCceeEEEEeCCCC
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR-----IGSDELMGCTAIGSSF  143 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~-----~~~~~~iG~~~i~l~~  143 (194)
                      -+.++....+|.|+|+|-..++........|.+++++...     -.....+|.+.++|-.
T Consensus        55 ~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            3444444489999999999997766677899999998442     2346789999999975

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=92.70  E-value=3.1  Score=30.72  Aligned_cols=87  Identities=14%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             CceeEEEEEcCCeEeEEeeceeec--CCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          70 NPYVKVYLVCEGKRIRKKRTSVKK--NSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        70 dpyv~v~l~~~~~~~~~~kT~~~~--~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      .-|+++.+.  ++.  ..+|....  ....-.|+|.|.+.+..  .. ..|.|.||.... ..+.+|+.+.+++-.....
T Consensus        38 ~~~ikl~~N--~k~--V~~T~~~~l~~dF~v~f~~~f~v~i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~~~  109 (168)
T PF15625_consen   38 RYYIKLFFN--DKE--VSRTRSRPLWSDFRVHFNEIFNVQITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH  109 (168)
T ss_pred             eEEEEEEEC--CEE--EEeeeeEecCCCeEEeccCEEEEEEec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence            357777763  333  33444332  23334778888887743  33 389999999776 6789999999998765321


Q ss_pred             hhhHHHHhhCCCCceEeEEEccCCC
Q psy6105         148 RDHWLEMLDNPRQPVTQWYPLMETV  172 (194)
Q Consensus       148 ~~~W~~~l~~p~~~~~~W~~L~~~~  172 (194)
                      .        .-......||.+.+..
T Consensus       110 ~--------~~~~~~~~~~eFsS~~  126 (168)
T PF15625_consen  110 T--------STDNVPLEEYEFSSDQ  126 (168)
T ss_pred             c--------cccCCceEeEEEcCCc
Confidence            0        0011156777775543

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.69  E-value=0.64  Score=34.77  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=47.3

Q ss_pred             eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCC------CCceeEEEEeCCCCC
Q psy6105          84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG------SDELMGCTAIGSSFI  144 (194)
Q Consensus        84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~------~~~~iG~~~i~l~~~  144 (194)
                      .....|.+...+.+|.|+|++-..++........|.++.++.+--.      ....+|.+.++|-..
T Consensus        53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~  119 (179)
T cd08696          53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRN  119 (179)
T ss_pred             ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecC
Confidence            3467888888899999999999999887777789999999833211      135688888888654

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.39  E-value=1.7  Score=31.79  Aligned_cols=69  Identities=17%  Similarity=0.270  Sum_probs=47.9

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEe-EEEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEEc
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLVC   79 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~~   79 (194)
                      +.||++.++|.++...+   .+|-||++.+-.+++.. ....|..+.. .++.|||-..|.+.     .+....+.+..
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence            57999999999997653   46889998877643222 1234555554 68999999999866     45566666543

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.27  E-value=1.3  Score=33.28  Aligned_cols=60  Identities=10%  Similarity=0.127  Sum_probs=47.0

Q ss_pred             eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecC--CCC-------CCceeEEEEeCCCC
Q psy6105          84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYD--RIG-------SDELMGCTAIGSSF  143 (194)
Q Consensus        84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~--~~~-------~~~~iG~~~i~l~~  143 (194)
                      .....|.+...+.+|.|.|++-..++........|.++.++..  .-.       ....+|.+.++|-.
T Consensus        55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            4577888888889999999999999888777889999999853  111       13468888888865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=91.52  E-value=0.19  Score=35.52  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             CCCcEEEEEE--EcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105          27 VADPYVKVYL--VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        27 ~~dpyv~v~l--~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      ..++||++.+  +++   .+..+|+++.++..|.|+-.|+|.++
T Consensus        32 GVN~yv~i~lSFl~~---~e~r~TrtVArSFcPeF~Hh~Efpc~   72 (143)
T cd08683          32 GVNSYVTIHLSFLPE---KELRRTRTVARSFCPEFNHHVEFPCN   72 (143)
T ss_pred             ccceEEEEEeccCCC---CceeeccchhhhcCCCccceEEEecc
Confidence            3579999885  454   45899999999999999999999866

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=91.11  E-value=0.38  Score=43.00  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=33.3

Q ss_pred             CCcEEE-EEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCC--ceeEEEEE
Q psy6105          28 ADPYVK-VYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN--PYVKVYLV   78 (194)
Q Consensus        28 ~dpyv~-v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~d--pyv~v~l~   78 (194)
                      .|||.. +.++.     +.++|.+.++|+||+||+...|.+..+  -|..+.+.
T Consensus        68 ~~~~~~~~~~g~-----~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  116 (644)
T PLN02964         68 KDKWLACVSFGE-----QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVF  116 (644)
T ss_pred             CCcEEEEEEecc-----eeeeeccccccCCcccchhhceEeccCCcceEEEEEE
Confidence            588765 44543     389999999999999999888876621  24455544

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.40  E-value=3.5  Score=30.83  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLV   78 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~   78 (194)
                      -..||+++++++++.. +......-||++.|-..+......+|..+.-+.++.|||-..|.+.     .+....+.+.
T Consensus         9 ~~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~   85 (178)
T cd08399           9 DRKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY   85 (178)
T ss_pred             CCCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence            3568899999975432 2233334677776655432333446777777788999999999866     4555555554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.98  E-value=0.92  Score=33.71  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEe-EEEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLV   78 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~-~~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~   78 (194)
                      -+.||++++++.++...  ....+-||++.|-..++.. ....|+.+.....+.|||.+.|++.     .+....+.+.
T Consensus         7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~   83 (173)
T cd08693           7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIY   83 (173)
T ss_pred             CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence            35799999999999862  3456678887776543222 2345666665677999999999866     4445555554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PLN02352 phospholipase D epsilon

Probab=89.43  E-value=0.4  Score=43.47  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=26.9

Q ss_pred             CcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC
Q psy6105          29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        29 dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      ||||.|.+...    ...+|   .+.-||.|+|.|...+.
T Consensus        37 ~~y~tv~~~~~----~v~rt---~~~~~p~w~e~f~i~~a   69 (758)
T PLN02352         37 ATYVTIKIGNK----KVAKT---SHEYDRVWNQTFQILCA   69 (758)
T ss_pred             CceEEEEeCCc----EEecC---CCCCCCccccceeEEee
Confidence            99999999864    35677   55669999999988765

>KOG1264|consensus

Probab=85.77  E-value=1.1  Score=40.97  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE-EEeeEEecCCCCceee-eeEEEecCCCceeEEEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYN-EALLFDVPANPYVKVYL   77 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~-e~f~f~~~~dpyv~v~l   77 (194)
                      ..+.++++-||.|+... .|-+.|||.|.+.+..-... .+.|.++.+.+||+|| |.|+|.+..--|+-+.+
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF 1136 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRF 1136 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEE
Confidence            45779999999998444 44566999999986433333 4555667799999999 99999987333333333

>PF14924 DUF4497: Protein of unknown function (DUF4497)

Probab=85.63  E-value=1.1  Score=30.70  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             ceEEEEecCCCC----CCceEEEEEEec-CC--CCCCceeEEEEeCCCCCCcch-hhHHHHhh-CCCCceEeEEEccCCC
Q psy6105         102 EALLFDVPASNV----NDVSLIIKVIDY-DR--IGSDELMGCTAIGSSFIGIGR-DHWLEMLD-NPRQPVTQWYPLMETV  172 (194)
Q Consensus       102 e~f~f~v~~~~l----~~~~l~i~V~d~-~~--~~~~~~iG~~~i~l~~~~~~~-~~W~~~l~-~p~~~~~~W~~L~~~~  172 (194)
                      ....|.+.++.+    ....|.+.+++- ..  .....+||.+.+++...-... +.|.+.-. .....+.+=|+|.+..
T Consensus        11 KScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~   90 (112)
T PF14924_consen   11 KSCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN   90 (112)
T ss_pred             cEEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC
Confidence            345666555433    345777877652 21  356678999999997542211 11211101 1223566789998744


Q ss_pred             CCCccccCCCCcceeeeecCC
Q psy6105         173 PGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      ..   ..|...|-++|+||+.
T Consensus        91 ~~---~~G~I~l~iRLsclG~  108 (112)
T PF14924_consen   91 GN---PVGEISLYIRLSCLGS  108 (112)
T ss_pred             Cc---eeeeEEEEEEEecCcc
Confidence            33   4588999999999975

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=85.00  E-value=4.3  Score=27.10  Aligned_cols=72  Identities=21%  Similarity=0.117  Sum_probs=47.2

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE-EEeeEEecCCCCceeeeeEEEecC-----CCceeEEEEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYLV   78 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l~   78 (194)
                      +.++....++.+.........+|-||.+.|-.+++... ...|..+.-...+.|||-..|.+.     .+....+.+.
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~   88 (100)
T smart00142       11 RNLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIY   88 (100)
T ss_pred             CceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEE
Confidence            34667777777776665444468899998876433221 345666666667999999999765     4455555553

Outlier of C2 family.

>KOG4027|consensus

Probab=83.81  E-value=15  Score=26.93  Aligned_cols=81  Identities=14%  Similarity=0.102  Sum_probs=46.1

Q ss_pred             EEecCCCceeEEEEEcCCeEeEE-e--eceeecCCCCCcccceEEEEecCC-------CCCCceEEEEEEecCCCCCCce
Q psy6105          64 LFDVPANPYVKVYLVCEGKRIRK-K--RTSVKKNSLNPFYNEALLFDVPAS-------NVNDVSLIIKVIDYDRIGSDEL  133 (194)
Q Consensus        64 ~f~~~~dpyv~v~l~~~~~~~~~-~--kT~~~~~t~nP~~~e~f~f~v~~~-------~l~~~~l~i~V~d~~~~~~~~~  133 (194)
                      +|...+|.|++.++...+.+... .  .+-....+..-.+++.+.|+++.+       ...=..|.+.|+..|.+++|.+
T Consensus        21 ~FPe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v  100 (187)
T KOG4027|consen   21 EFPEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCV  100 (187)
T ss_pred             ecCCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCccee
Confidence            44444788999888644432211 1  111111111224555555554332       1122479999999999999999


Q ss_pred             eEEEEeCCCCC
Q psy6105         134 MGCTAIGSSFI  144 (194)
Q Consensus       134 iG~~~i~l~~~  144 (194)
                      .|...|.+...
T Consensus       101 ~GYg~~hiP~~  111 (187)
T KOG4027|consen  101 TGYGMLHIPTE  111 (187)
T ss_pred             eeeeeEecCcC
Confidence            98877776543

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=82.00  E-value=3.6  Score=29.76  Aligned_cols=74  Identities=19%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             CCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeE-EEeeEEecCCCCceeeeeEEEecC-----CCceeEEEE
Q psy6105           4 KGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVP-----ANPYVKVYL   77 (194)
Q Consensus         4 ~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~-~~~T~~~~~t~nP~w~e~f~f~~~-----~dpyv~v~l   77 (194)
                      +....+|+.+.+..++...+ ....+-||.+.|-..++... ...|.......++.|||...|.+.     .+....+.+
T Consensus         5 di~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl   83 (156)
T cd08380           5 DINFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI   83 (156)
T ss_pred             ecCCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence            44567899999998887622 33466788887775433222 233333333368999999999865     455555555


Q ss_pred             E
Q psy6105          78 V   78 (194)
Q Consensus        78 ~   78 (194)
                      .
T Consensus        84 ~   84 (156)
T cd08380          84 Y   84 (156)
T ss_pred             E
Confidence            4

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1329|consensus

Probab=81.36  E-value=2.7  Score=38.66  Aligned_cols=102  Identities=19%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             CceeEEEEEcCCeEeEEeeceeecCC-CCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          70 NPYVKVYLVCEGKRIRKKRTSVKKNS-LNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        70 dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      ++|+.+.+...    ...+|..+.+. .+|.|.+.|.  +...... ..+.+.+.+.+-.+...++|.+.++...+..  
T Consensus       139 e~Ylt~~l~~~----~~~~t~~~~~f~e~s~~~f~~~--~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~--  209 (887)
T KOG1329|consen  139 ENYLTVVLHKA----RYRRTHVIYEFLENSRWSFSFD--IGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCS--  209 (887)
T ss_pred             cchheeeechh----hhhchhhhhcccccchhhhhcc--ccccccc-cEEEEeecCCccccceeEEEEeccchhhhhc--
Confidence            78888877432    24566666554 7899997654  4333333 4788888888877767899999998875532  


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                                +..+.+|+++....  .++..+..+..+++.+.+
T Consensus       210 ----------~~~~~~~~~Il~~d--~~~~~~~~~~~~~~~~~~  241 (887)
T KOG1329|consen  210 ----------GHRIGGWFPILDND--GKPHQKGSNESLRLGFTP  241 (887)
T ss_pred             ----------cccccceeeeeccC--CccccCCcccceEEeeEe
Confidence                      36678899998844  467777777777666554

>KOG0906|consensus

Probab=80.49  E-value=3.1  Score=37.13  Aligned_cols=75  Identities=27%  Similarity=0.254  Sum_probs=49.3

Q ss_pred             CCceeEEEEEcCCeE-eEEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105          69 ANPYVKVYLVCEGKR-IRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSF  143 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~-~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~  143 (194)
                      +|.|++..+...+.. ..--+|+.+.....-.|||.+.+.+...++ .++.+.|++|+....+...++|...+.+..
T Consensus        47 ~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~  123 (843)
T KOG0906|consen   47 SDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG  123 (843)
T ss_pred             hhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence            567776655533221 112233333222223599999998877766 357899999998777788899998887764

>KOG1265|consensus

Probab=80.03  E-value=1.2  Score=40.86  Aligned_cols=90  Identities=23%  Similarity=0.367  Sum_probs=55.3

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEE--cCCeEeEEEeeEEec-CCCCceeee-eEEEe-c--CCCceeEEEEEc
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLV--CEGKRIRKKRTSVKK-NSLNPFYNE-ALLFD-V--PANPYVKVYLVC   79 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~--~~~~~~~~~~T~~~~-~t~nP~w~e-~f~f~-~--~~dpyv~v~l~~   79 (194)
                      ..+++++++++-|..++.+    .||.|.+-  |..-.++.++|+++. +.+||+|+| .|.|. |  +.=.++++.+..
T Consensus       703 ~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             eeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            3578999999999888865    79998875  433233467777665 778999985 67775 2  122355555554


Q ss_pred             CCeEeEEeeceeecCCCCCccc
Q psy6105          80 EGKRIRKKRTSVKKNSLNPFYN  101 (194)
Q Consensus        80 ~~~~~~~~kT~~~~~t~nP~~~  101 (194)
                      .+++..-++--. -..+++-|.
T Consensus       779 EggK~ig~RIlp-vd~l~~GYr  799 (1189)
T KOG1265|consen  779 EGGKFIGQRILP-VDGLNAGYR  799 (1189)
T ss_pred             cCCceeeeeccc-hhcccCcce
Confidence            444333222211 134666555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		6e-27
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		6e-27
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		3e-18
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		4e-18
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		4e-18
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		5e-18
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		2e-16
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		2e-14
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		1e-12
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		2e-12
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		2e-12
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		5e-09
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		5e-09
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-08
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		3e-08
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		3e-08
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		4e-08
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		6e-08
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		6e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-07
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-07
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		3e-07
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		4e-07
2q3x_A	171	The Rim1alpha C2b Domain Length = 171		9e-06
2q3x_A	171	The Rim1alpha C2b Domain Length = 171		2e-05
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		1e-05
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		1e-05
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		4e-05
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		5e-05
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		2e-04
3fbk_A	153	Crystal Structure Of The C2 Domain Of The Human Reg		8e-04

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK  L+ EG+R++K++TS+KKN+LNP YNEAL+FDV   +V +V L I V+DYD I
Sbjct: 173 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 232
Query: 129 GSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G       GR+HW EML NPR+PV  W+ L+E
Sbjct: 233 GHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK  L+ EG+R++K++TS+KKN+LNP YNEAL+FDV   +V +V L I V+DYD I
Sbjct: 174 SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCI 233
Query: 129 GSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQWYPLME 170
           G +E++G   +G       GR+HW EML NPR+PV  W+ L+E
Sbjct: 234 GHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 276

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK++L+  GKR++KK+T++KKN+LNP+YNE+  F+VP   +  V +++ V+DYD+I
Sbjct: 171 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 230
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G ++ +G   +G +  G    HW +ML NPR+P+ QW+ L
Sbjct: 231 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK++L+  GKR++KK+T++KKN+LNP+YNE+  F+VP   +  V +++ V+DYD+I
Sbjct: 39  SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 98
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G ++ +G   +G +  G    HW +ML NPR+P+ QW+ L
Sbjct: 99  GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 138

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK++L+  GKR++KK+T++KKN+LNP+YNE+  F+VP   +  V +++ V+DYD+I
Sbjct: 38  SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 97
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G ++ +G   +G +  G    HW +ML NPR+P+ QW+ L
Sbjct: 98  GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 137

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 73/100 (73%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK++L+  GKR++KK+T++KKN+LNP+YNE+  F+VP   +  V +++ V+DYD+I
Sbjct: 46  SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 105
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           G ++ +G   +G +  G    HW +ML NPR+P+ QW+ L
Sbjct: 106 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 145

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 64/102 (62%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV L    KRI KK+T VKK + N  +NE  +FD+P  ++ ++S+   V+D +R 
Sbjct: 51  SDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERG 110
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
             +E++G   +G++  G G  HW E+ D PR+ + +W+ L +
Sbjct: 111 SRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + KR+ KK+T  KK +LNP +NE+  FD+P   + + ++II V+D D++
Sbjct: 37  SDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKL 96
Query: 129 GSDELMGCTAIGSSFIGIGR-DHWLEMLDNPRQPVTQWYPL 168
             ++++G   + S   G G   HW +M+  PRQPV QW+ L
Sbjct: 97  SRNDVIGKIYL-SWKSGPGEVKHWKDMIARPRQPVAQWHQL 136

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++P+VK++L  +  +  K +T +KK +LNP +NE   +D+  S++   SL I V DYD  
Sbjct: 58  SDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
            S++ +G   +G S  G    HW E L N  + + +W+ L 
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 158

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++P+VK++L  +  +  K +T +KK +LNP +NE   +D+  S++   SL I V DYD  
Sbjct: 58  SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 117
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
            S++ +G   +G S  G    HW E L N  + + +W+ L
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 157

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++P+VK++L  +  +  K +T +KK +LNP +NE   +D+  S++   SL I V DYD  
Sbjct: 36  SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 95
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
            S++ +G   +G S  G    HW E L N  + + +W+ L
Sbjct: 96  KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 135

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           +NPYVK YL+ +  R  K++TS+K++++NP Y+E L +++P S +   +L   V  + R 
Sbjct: 45  SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRF 104
Query: 129 GSDELMGCTAI 139
           G +  +G   I
Sbjct: 105 GRNTFLGEAEI 115

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + + + K++T   K +LNP +NE  +F++   +V +  L ++V D+DR 
Sbjct: 41  SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDV-ERRLSVEVWDWDRT 99
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             ++ MG  + G S          E+L   + PV  WY L+    G+
Sbjct: 100 SRNDFMGAMSFGVS----------ELL---KAPVDGWYKLLNQEEGE 133

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR 
Sbjct: 38  SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 95
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
              +++G   +  + +  G   + W ++
Sbjct: 96  SKHDIIGEFKVPMNTVDFGHVTEEWRDL 123

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR 
Sbjct: 55  SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
              +++G   +  + +  G   + W ++
Sbjct: 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR 
Sbjct: 55  SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
              +++G   +  + +  G   + W ++
Sbjct: 113 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR 
Sbjct: 63  SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 120
Query: 129 GSDELMGCTAIGSSFIGIGR--DHWLEM 154
              +++G   +  + +  G   + W ++
Sbjct: 121 SKHDIIGEFKVPMNTVDFGHVTEEWRDL 148

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + K   K++T   +++LNP +NE+  F +  S+  D  L +++ D+DR 
Sbjct: 38  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 96
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             ++ MG  + G S          E++   + P + WY L+    G+
Sbjct: 97  TRNDFMGSLSFGVS----------ELM---KMPASGWYKLLNQEEGE 130

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + K   K++T   +++LNP +NE+  F +  S+  D  L +++ D+DR 
Sbjct: 37  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 95
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             ++ MG  + G S          E++   + P + WY L+    G+
Sbjct: 96  TRNDFMGSLSFGVS----------ELM---KMPASGWYKLLNQEEGE 129

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + K   K++T   K+SLNP +NE   F +  S+  D  L +++ D+D  
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD-KDRRLSVEIWDWDLT 251
Query: 129 GSDELMGCTAIG-SSFIGIGRDHWLEML 155
             ++ MG  + G S     G D W ++L
Sbjct: 252 SRNDFMGSLSFGISELQKAGVDGWFKLL 279

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + K   K++T   K SLNP +NE   F +  S+  D  L +++ D+D  
Sbjct: 52  SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD-KDRRLSVEIWDWDLT 110
Query: 129 GSDELMGCTAIG-SSFIGIGRDHWLEML 155
             ++ MG  + G S     G D W ++L
Sbjct: 111 SRNDFMGSLSFGISELQKAGVDGWFKLL 138

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 65  FDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVI 123
           F   ++P+VK+YL+ + K   K  T VK+ +LNP +NE  LF+  P   V    L ++V+
Sbjct: 43  FSGTSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVL 100
Query: 124 DYDRIGSDELMGCTAI 139
           DYDR   ++ +G  +I
Sbjct: 101 DYDRFSRNDPIGEVSI 116

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + K   K++T   +++LNP +NE+  F +  S+  D  L +++ D+DR 
Sbjct: 39  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSD-KDRRLSVEIWDWDRT 97
Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQ 175
             ++  G  + G S +              + P + WY L+    G+
Sbjct: 98  TRNDFXGSLSFGVSELX-------------KXPASGWYKLLNQEEGE 131

>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 3/47 (6%)
Query: 20 GNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 66
          G++S P+   PYVKVYL+  G  I KK+T + + +L+P Y ++L+FD
Sbjct: 47 GSKSTPA---PYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90

>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           PYVKVYL+  G  I KK+T + + +L+P Y ++L+FD   S    V  +I   DY R   
Sbjct: 54  PYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD--ESPQGKVLQVIVWGDYGRXDH 111
Query: 131 DELMGCTAI 139
               G   I
Sbjct: 112 KCFXGVAQI 120

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 48  TSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 107
           T ++   L P  +  L     A+PYVK++L+    +  K RT   +N+ NP +NE L + 
Sbjct: 34  TIIRAKGLKPMDSNGL-----ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 108 -VPASNVNDVSLIIKVIDYDRIGSDELMGCT 137
            +   ++   +L I V D D+ G +E +G T
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGET 119

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 48  TSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD 107
           T ++   L P  +  L     A+PYVK++L+    +  K RT   +N+ NP +NE L + 
Sbjct: 32  TIIRAKGLKPMDSNGL-----ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 86
Query: 108 -VPASNVNDVSLIIKVIDYDRIGSDELMGCT 137
            +   ++   +L I V D D+ G +E +G T
Sbjct: 87  GITEEDMQRKTLRISVCDEDKFGHNEFIGET 117

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           +NPYVK+ L+ + K    K+T VK+ +  P + E   F++P       +L++ V+D+D+ 
Sbjct: 54  SNPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKF 111
Query: 129 GSDELMGCTAIGSSFIGIGR-DHWLEML 155
               ++G  ++    + + +  HW + L
Sbjct: 112 SRHCVIGKVSVPLCEVDLVKGGHWWKAL 139

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 24/113 (21%)
Query: 69  ANPYVKVYL---------VCEGKRIRKKRTSVKKNSLNPFYNEALLF-DVPASNVNDVSL 118
           ++P+VKVYL         V       K+RT   + SLNP +N+ +++  +    +   +L
Sbjct: 39  SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL 98
Query: 119 IIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDN-PRQPVTQWYPLME 170
            + V DYDR  S++ +G   I  S            LDN PR     WYPL E
Sbjct: 99  EVTVWDYDRFSSNDFLGEVLIDLSSTS--------HLDNTPR-----WYPLKE 138

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYV++YL+ + +R  +++T V K +LNP ++++  F V    V   +L + V +    
Sbjct: 44  SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 129 GSDE--LMG--CTAIGSSFIGIGRDHWLEMLDN 157
            S +  L+G    A+ S  +  G   W ++ ++
Sbjct: 104 LSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136

>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast Structural Genomics Consortium Target Hr5550a Length = 153

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 25  PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI 84
           P   DPYVK+ L+ E  R+R ++T    +  +P ++E   F V      K  LV    R 
Sbjct: 44  PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA 103
Query: 85  RKKRTS 90
            + R S
Sbjct: 104 SQSRQS 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-46
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-45
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-45
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-44
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-41
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	8e-20
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	9e-41
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-20
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-28
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-27
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-27
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-25
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	8e-25
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-24
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-24
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	5e-24
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-23
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-23
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-23
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-22
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-22
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-22
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-21
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	7e-21
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-20
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-19
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-17
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	6e-17
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	7e-17
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-16
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-16
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	7e-16
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-15
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-15
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-14
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-13
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	8e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	9e-06
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	3e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	4e-07
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	3e-06

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  149 bits (377), Expect = 2e-46
 Identities = 38/103 (36%), Positives = 64/103 (62%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++PYVKV L    KRI KK+T VKK + N  +NE  +FD+P  ++ ++S+   V+D +R
Sbjct: 50  LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER 109

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
              +E++G   +G++  G G  HW E+ D PR+ + +W+ L +
Sbjct: 110 GSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  147 bits (372), Expect = 2e-45
 Identities = 34/103 (33%), Positives = 57/103 (55%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++P+VK++L  +  +  K +T +KK +LNP +NE   +D+  S++   SL I V DYD 
Sbjct: 57  YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI 116

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
             S++ +G   +G S  G    HW E L N  + + +W+ L  
Sbjct: 117 GKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 159

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  145 bits (367), Expect = 4e-45
 Identities = 38/100 (38%), Positives = 64/100 (64%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + KR+ KK+T  KK +LNP +NE+  FD+P   + + ++II V+D D++
Sbjct: 37  SDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKL 96

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
             ++++G   +          HW +M+  PRQPV QW+ L
Sbjct: 97  SRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQL 136

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  144 bits (364), Expect = 2e-44
 Identities = 45/111 (40%), Positives = 75/111 (67%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK++L+  GKR++KK+T++KKN+LNP+YNE+  F+VP   +  V +++ V+DYD+I
Sbjct: 46  SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 105

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
           G ++ +G   +G +  G    HW +ML NPR+P+ QW+ L         L+
Sbjct: 106 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLA 156

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  139 bits (351), Expect = 5e-41
 Identities = 44/103 (42%), Positives = 73/103 (70%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++PYVK++L+  GKR++KK+T++KKN+LNP+YNE+  F+VP   +  V +++ V+DYD+
Sbjct: 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 229

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           IG ++ +G   +G +  G    HW +ML NPR+P+ QW+ L  
Sbjct: 230 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 83.3 bits (206), Expect = 8e-20
 Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 4/103 (3%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR 
Sbjct: 40  SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97

Query: 129 GSDELMGCTAIGSSFI--GIGRDHWLEMLDNPRQPVTQWYPLM 169
              +++G   +  + +  G   + W ++    ++   +   + 
Sbjct: 98  SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDIC 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  138 bits (350), Expect = 9e-41
 Identities = 53/104 (50%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++PYVK  L+ EG+R++K++TS+KKN+LNP YNEAL+FDV   +V +V L I V+DYD 
Sbjct: 172 FSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC 231

Query: 128 IGSDELMGCTAIG-SSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           IG +E++G   +G  +    GR+HW EML NPR+PV  W+ L+E
Sbjct: 232 IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.7 bits (207), Expect = 7e-20
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+YL+ + K+  K +T V + +LNP +NE   F VP + +    L   V D+DR 
Sbjct: 41  SDPYVKIYLLPDRKK--KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRF 98

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
              +L+G   +         D+ LE+ + P      W  ++E
Sbjct: 99  SRHDLIGQVVL---------DNLLELAEQPP-DRPLWRDILE 130

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  102 bits (257), Expect = 2e-28
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 13/108 (12%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
             +PYVK+ L+ E  R+R ++T    +  +P ++E   F V   +     L++ V +   
Sbjct: 46  TCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRAS 104

Query: 128 IG-SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPG 174
                 L+GC + G           ++ L  P + ++ WY L+    G
Sbjct: 105 QSRQSGLIGCMSFG-----------VKSLLTPDKEISGWYYLLGEHLG 141

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  100 bits (252), Expect = 1e-27
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           +NPYVK YL+ +  R  K++TS+K++++NP Y+E L +++P S +   +L   V  + R 
Sbjct: 45  SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRF 104

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSH 180
           G +  +G   I            ++      + +    PL   +  +    H
Sbjct: 105 GRNTFLGEAEIQ-----------MDSWK-LDKKLDHCLPLHGKISAESEGHH 144

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  100 bits (251), Expect = 2e-27
 Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
             PYVKVYL+  G  I KK+T + + +L+P Y ++L+FD        V  +I   DY R+
Sbjct: 52  PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ--GKVLQVIVWGDYGRM 109

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSL 188
                MG   I            LE LD     V  WY L        P        +S 
Sbjct: 110 DHKCFMGVAQIL-----------LEELD-LSSMVIGWYKLFPPSSLVDPTLAPLTRRASQ 157

Query: 189 SCLNGR 194
           S L   
Sbjct: 158 SSLESS 163

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 93.6 bits (233), Expect = 8e-25
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++PYVK+ L+ + K   K++T   K SLNP +NE   F +  S+  D  L +++ D+D 
Sbjct: 51  LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDL 109

Query: 128 IGSDELMGCTAIG-SSFIGIGRDHWLEMLDN 157
              ++ MG  + G S     G D W ++L  
Sbjct: 110 TSRNDFMGSLSFGISELQKAGVDGWFKLLSQ 140

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 92.0 bits (229), Expect = 2e-24
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYV++YL+ + +R  +++T V K +LNP ++++  F V    V   +L + V +    
Sbjct: 44  SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103

Query: 129 GSDE--LMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
            S +  L+G   +            L   +   +  TQWY L E
Sbjct: 104 LSKDKGLLGKVLVA-----------LASEE-LAKGWTQWYDLTE 135

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 91.2 bits (227), Expect = 4e-24
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
             NPYVK YL+ +  +  K++T + + + NP +NE L++       +    L + V+  +
Sbjct: 39  DPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98

Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMET 171
            +  +  +G   +            L+  +   +   +WY L   
Sbjct: 99  SLRENFFLGGITLP-----------LKDFN-LSKETVKWYQLTAA 131

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 91.3 bits (227), Expect = 5e-24
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
            + YV+  +        + +T++KK  L+  + E L+  +    +   +L + +   DR 
Sbjct: 44  CDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF 102

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPG 174
               + G   +G           L+    P     QW  L  + P 
Sbjct: 103 SRHSVAGELRLG-----------LDGTSVP-LGAAQWGELKTSGPS 136

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 89.7 bits (223), Expect = 2e-23
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR
Sbjct: 54  TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
               +++G   +            +  +D       +W  L  
Sbjct: 112 FSKHDIIGEFKVP-----------MNTVD-FGHVTEEWRDLQS 142

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 89.3 bits (222), Expect = 3e-23
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 4/100 (4%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
           P NPYVK+Y + +     K+RT   K +L P +N+  ++  V      +  L I + D  
Sbjct: 41  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 100

Query: 127 RIGSDE--LMGCTAIG-SSFIGIGRDHWLEMLDNPRQPVT 163
           R+  +E   +G   I   + +     HW ++  +   P +
Sbjct: 101 RVREEESEFLGEILIELETALLDDEPHWYKLQTHDSGPSS 140

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 89.0 bits (221), Expect = 5e-23
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR
Sbjct: 62  TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 119

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
               +++G   +            +  +D       +W  L  
Sbjct: 120 FSKHDIIGEFKVP-----------MNTVD-FGHVTEEWRDLQS 150

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 88.2 bits (219), Expect = 1e-22
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 62  ALLFDVPANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLII 120
           ALL        ++V ++ C        RT     S    +NE     +    ++  +L +
Sbjct: 57  ALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRV 116

Query: 121 KVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
            V   DR   +E +G   I            L  +    +  T+WY L+
Sbjct: 117 DVCTTDRSHLEECLGGAQIS-----------LAEVCRSGERSTRWYNLL 154

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 87.9 bits (218), Expect = 1e-22
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 14/107 (13%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            +NPYVK+ L+ + K    K+T VK+ +  P + E   F++P       +L++ V+D+D+
Sbjct: 53  HSNPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK 110

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPG 174
                ++G  ++            L  +D   +    W  L+ + P 
Sbjct: 111 FSRHCVIGKVSVP-----------LCEVD-LVKGGHWWKALIPSGPS 145

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 87.0 bits (216), Expect = 2e-22
 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
            ++PY+K+ ++ E K   K +T V + +L+P ++E   F  +P + + +++L   ++ +D
Sbjct: 43  TSDPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100

Query: 127 RIGSDELMGCTAIGSSFIGIGRD---HWLEMLDNPR 159
           R   D+++G   I  S I +         E++  P 
Sbjct: 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS 136

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 85.1 bits (211), Expect = 1e-21
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
            A+PYVK++L+    +  K RT   +N+ NP +NE L +  +   ++   +L I V D D
Sbjct: 49  LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED 108

Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETV 172
           + G +E +G T              L+ L    Q       L   +
Sbjct: 109 KFGHNEFIGETRFS-----------LKKLK-ANQRKNFNICLERVI 142

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 83.2 bits (206), Expect = 7e-21
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 15/107 (14%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
            ++P+VK+YL+ + K   K  T VK+ +LNP +NE  LF+  P   V    L ++V+DYD
Sbjct: 46  TSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103

Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVP 173
           R   ++ +G  +I            L  +D   Q  T W  L  + P
Sbjct: 104 RFSRNDPIGEVSIP-----------LNKVD-LTQMQTFWKDLKPSGP 138

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 81.2 bits (201), Expect = 2e-20
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
           P NPYVK+Y + +     K+RT   K +L P +N+  ++  V      +  L I + D  
Sbjct: 38  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 97

Query: 127 RIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           R+  +E      +G   I +                  WY L
Sbjct: 98  RVREEESE---FLGEILIELETALL--------DDEPHWYKL 128

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 79.0 bits (195), Expect = 3e-19
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 22/112 (19%)

Query: 69  ANPYVKVYLVCEGKRI---------RKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSL 118
           ++P+VKVYL+    ++          K+RT   + SLNP +N+ +++  +    +   +L
Sbjct: 39  SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL 98

Query: 119 IIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
            + V DYDR  S++ +G   I            L           +WYPL E
Sbjct: 99  EVTVWDYDRFSSNDFLGEVLID-----------LSSTS-HLDNTPRWYPLKE 138

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 18/99 (18%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIG 129
           P V V       +  KK+T    N LNP +NE L FD+    +    SL I V D++ IG
Sbjct: 29  PIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83

Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
            ++L+G   +            L+ L    Q  +  Y L
Sbjct: 84  QNKLIGTATVA-----------LKDLT-GDQSRSLPYKL 110

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 73.5 bits (180), Expect = 6e-17
 Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 26/167 (15%)

Query: 2   SSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNE 61
           SS       +    R ++ + ++       V++    E   ++  R S++ +     +  
Sbjct: 3   SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRI---GEAVGLQPTRWSLRHSLFKKGHQ- 58

Query: 62  ALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIK 121
                   +PY+ V +     ++R  +TS K+ +  P YNE    +V         L + 
Sbjct: 59  ------LLDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCANVTDGGH----LELA 104

Query: 122 VIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           V     +G D  +    +            L            W  L
Sbjct: 105 VFHETPLGYDHFVANCTLQFQE--------LLRTTGASDTFEGWVDL 143

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 72.9 bits (179), Expect = 7e-17
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 71  PYVKVYLVCEGKR-IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           PYV+V L       +   +T   K SLNP +NE +LF V         L+ +V D +R+ 
Sbjct: 43  PYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVFDENRLT 99

Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM-----ETVPGQIPLSHS 181
            D+ +G   +    +                   + + L        V G + L  +
Sbjct: 100 RDDFLGQVDVPLYPLPTENPRLERPY------TFKDFVLHPRSHKSRVKGYLRLKMT 150

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           P+ K+ +   G+      T   KN+L+P +N+     V  ++    S+ I V ++ +I  
Sbjct: 28  PFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHYDLYVGKTD----SITISVWNHKKIHK 80

Query: 131 DE---LMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
            +    +GC  + S+ I   +D   + LD  +   +      + V GQI +S
Sbjct: 81  KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD----TDAVRGQIVVS 128

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 71.0 bits (174), Expect = 3e-16
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 24/132 (18%)

Query: 37  VCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTSVKKNSL 96
           +CE   ++    S++                  +PY+ + +       R  +T+ K+ + 
Sbjct: 12  ICEAVSLKPTAWSLRDAVGPRPQTFL------LDPYIALNV----DDSRIGQTATKQKTN 61

Query: 97  NPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLD 156
           +P +++  + DV     N   + + V     IG D+ +    I             E+L 
Sbjct: 62  SPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFE----------ELLQ 107

Query: 157 NPRQPVTQWYPL 168
           N  +    W  L
Sbjct: 108 NGSRHFEDWIDL 119

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 71.1 bits (174), Expect = 7e-16
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 71  PYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           PYV+V L       +   +T   K SLNP +NE +LF V         ++ +V D +R+ 
Sbjct: 31  PYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEVFDENRLT 87

Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM-----ETVPGQIPLSHS 181
            D+ +G   +    +                   + + L        V G + L  +
Sbjct: 88  RDDFLGQVDVPLYPLPTENPRMERPY------TFKDFVLHPRSHKSRVKGYLRLKMT 138

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           PYV++++        +KRT    N +NP +NE   F +   N  +V L I ++D +    
Sbjct: 29  PYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFILD-PNQENV-LEITLMDANY-VM 83

Query: 131 DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
           DE +G                +  +    +     +   +     + +S
Sbjct: 84  DETLGTATFT-----------VSSMK-VGEKKEVPFIFNQVTEMVLEMS 120

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 67.7 bits (166), Expect = 5e-15
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 17/109 (15%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           P+  + L   G    + +T     +LNP +N+   F +   +++DV L + V D D    
Sbjct: 36  PFCLLEL---GND--RLQTHTVYKNLNPEWNKVFTFPIK--DIHDV-LEVTVFDEDGDKP 87

Query: 131 DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
            + +G  AI    I  G+ +           V +   L +   G I L 
Sbjct: 88  PDFLGKVAIPLLSIRDGQPNCY---------VLKNKDLEQAFKGVIYLE 127

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 20/113 (17%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           PYV++       + +K     +     P +NE  +F V         L  K+ D D    
Sbjct: 33  PYVQLTC---RTQDQKSNV-AEGMGTTPEWNETFIFTVSEGT---TELKAKIFDKDVGTE 85

Query: 131 DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM--ETVPGQIPLSHS 181
           D+ +G   I            LE +          Y ++  E   G+I ++ S
Sbjct: 86  DDAVGEATIP-----------LEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 63.7 bits (155), Expect = 3e-13
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYV+V +  +G+    K+T    N+ +P + + L   V   +     L  +V  +  + 
Sbjct: 58  SPYVEVTV--DGQ---SKKTEKCNNTNSPKWKQPLTVIVTPVSK----LHFRVWSHQTLK 108

Query: 130 SDELMGCTAIGSSFIGIGRDHWLEML 155
           SD L+G  A+         +  LE +
Sbjct: 109 SDVLLGTAALDIYETLKSNNMKLEEV 134

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 71  PYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS 130
           PYV V +   GK   KKRT     +LNP + E   F+   S      + ++V+D D    
Sbjct: 40  PYVTVQV---GKT--KKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDEDDDIK 91

Query: 131 DELMGCTAIGSS-FIGIGRDHWLEMLDNPRQPVTQWYPL 168
             +       S  F+G      +E+     + +  WY L
Sbjct: 92  SRVKQRFKRESDDFLGQTI---IEVRTLSGE-MDVWYNL 126

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 50.3 bits (119), Expect = 8e-08
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
            +PYV++++        +KRT    N +NP +NE   F +      +  L I ++D + +
Sbjct: 42  PDPYVELFIS--TTPDSRKRTRHFNNDINPVWNETFEFILD--PNQENVLEITLMDANYV 97

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM 169
             DE +G      S + +G    +  + N    +     L 
Sbjct: 98  -MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 137

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 44.5 bits (104), Expect = 9e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 26 SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP 68
             DPYV++++        +KRT    N +NP +NE   F + 
Sbjct: 40 DTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWNETFEFILD 80

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNP-FYNEALLFDVPASNVNDVSLIIKVIDYDR 127
           A+   KV       R +   + V +N  +   ++E   + V +S   +  L I++ +Y +
Sbjct: 37  ADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91

Query: 128 IGSDELMGCTAI 139
           + S++L+G   +
Sbjct: 92  VFSNKLIGTFRM 103

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           + Y+KV+    G +  + RT V  N+ NP + + + F+    +     L ++V D D   
Sbjct: 415 DAYLKVFF---GGQ--EFRTGVVWNNNNPRWTDKMDFENVLLSTGGP-LRVQVWDADYGW 468

Query: 130 SDELMGCTAI 139
            D+L+G    
Sbjct: 469 DDDLLGSCDR 478

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 66  DVPANPYVKVYLV-CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLI-IKVI 123
           +   +P V V +         ++   +  N  NP ++    F+V    V D++L+   V 
Sbjct: 517 NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEV---TVPDLALVRFMVE 573

Query: 124 DYDRIGSDELMGCTAI 139
           DYD    ++ +G + I
Sbjct: 574 DYDSSSKNDFIGQSTI 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.95
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.95
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.94
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.94
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.87
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.87
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.87
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.87
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.86
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.86
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.86
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.85
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.85
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.85
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.85
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.85
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.84
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.84
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.84
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.83
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.83
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.83
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.83
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.83
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.83
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.82
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.81
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.81
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.8
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.8
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.8
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.79
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.78
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.66
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.63
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.6
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.6
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.59
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.57
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.55
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.55
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.52
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.51
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.42
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.19
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.18
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.1
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.46
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.43
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	97.56
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	97.49
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	97.46
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	97.25
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	97.17
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	97.17
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	97.16
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	97.09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	97.08
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	97.08
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	97.07
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	97.03
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	97.02
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	96.99
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	96.96
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	96.93
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	96.91
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	96.9
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	96.9
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	96.9
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	96.89
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	96.88
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	96.83
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	96.83
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	96.82
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	96.79
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	96.78
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	96.61
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	96.54
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	96.43
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	96.41
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	96.35
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	95.94
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	95.82
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	95.52
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	95.42
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	95.41
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.63
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	94.15
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	94.1
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	93.89
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	93.66
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	93.27
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	93.27
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	93.05
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	92.88
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	91.88
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	90.61
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	90.18
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	88.17

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=5.6e-36  Score=238.09  Aligned_cols=166  Identities=37%  Similarity=0.742  Sum_probs=151.7

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-----------------
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-----------------   68 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-----------------   68 (194)
                      ...+++.++.|++|+++|.+|.+||||++++.++.  ..+.+|+++++|+||.|||+|.|.+.                 
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCT--TSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCC--CceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            45789999999999999999999999999999752  34688999999999999999999865                 


Q ss_pred             ---------------------------------------------------------------------------CCcee
Q psy6105          69 ---------------------------------------------------------------------------ANPYV   73 (194)
Q Consensus        69 ---------------------------------------------------------------------------~dpyv   73 (194)
                                                                                                 +||||
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv  175 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYV  175 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEE
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEE
Confidence                                                                                       79999


Q ss_pred             EEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHH
Q psy6105          74 KVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLE  153 (194)
Q Consensus        74 ~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~  153 (194)
                      ++.+...+....+++|+++++++||+|||+|.|.++.+++....|.|+|||++.++++++||++.|++...+.+.+||.+
T Consensus       176 ~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~  255 (284)
T 2r83_A          176 KIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSD  255 (284)
T ss_dssp             EEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHH
T ss_pred             EEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHH
Confidence            99998776767789999999999999999999999888877778999999999999999999999999999999999999


Q ss_pred             HhhCCCCceEeEEEccCCCC
Q psy6105         154 MLDNPRQPVTQWYPLMETVP  173 (194)
Q Consensus       154 ~l~~p~~~~~~W~~L~~~~~  173 (194)
                      |+..|+.++++||+|.+..+
T Consensus       256 ~~~~~~~~~~~W~~L~~~~~  275 (284)
T 2r83_A          256 MLANPRRPIAQWHTLQVEEE  275 (284)
T ss_dssp             HHHSTTSCEEEEEECBCHHH
T ss_pred             HHHCCCCchheeeecCCccc
Confidence            99999999999999988643

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1.1e-35  Score=238.05  Aligned_cols=166  Identities=43%  Similarity=0.799  Sum_probs=148.8

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecC-----------------
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVP-----------------   68 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~-----------------   68 (194)
                      ...+++.+++|++|+++|..|.+||||+|++.+++  ..+.+|+++++|+||.|||+|.|.+.                 
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR--KKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST--TSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCC--CeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            45799999999999999999999999999997652  34789999999999999999999875                 


Q ss_pred             ----------------------------------------------------------------------------CCce
Q psy6105          69 ----------------------------------------------------------------------------ANPY   72 (194)
Q Consensus        69 ----------------------------------------------------------------------------~dpy   72 (194)
                                                                                                  +|||
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpy  176 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPY  176 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEE
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcE
Confidence                                                                                        6999


Q ss_pred             eEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCc-chhhH
Q psy6105          73 VKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGI-GRDHW  151 (194)
Q Consensus        73 v~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~W  151 (194)
                      |++++...+....+++|+++++++||+|||+|.|.++.+.+....|.|+|||++.++++++||++.|++...+. +.+||
T Consensus       177 v~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W  256 (296)
T 1dqv_A          177 VKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHW  256 (296)
T ss_dssp             EEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHH
T ss_pred             EEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHH
Confidence            99999755444568899999999999999999999987777667899999999999999999999999999887 89999


Q ss_pred             HHHhhCCCCceEeEEEccCCCC
Q psy6105         152 LEMLDNPRQPVTQWYPLMETVP  173 (194)
Q Consensus       152 ~~~l~~p~~~~~~W~~L~~~~~  173 (194)
                      .+|+.+|++++++||+|++...
T Consensus       257 ~~~~~~~~~~~~~w~~L~~~~~  278 (296)
T 1dqv_A          257 AEMLANPRKPVEHWHQLVEEKT  278 (296)
T ss_dssp             HTSSSSSSSCSCSCCCCBBCC-
T ss_pred             HHHHhCCCCceeEeeeccCccc
Confidence            9999999999999999998653

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.95  E-value=1.7e-27  Score=169.86  Aligned_cols=124  Identities=33%  Similarity=0.615  Sum_probs=101.9

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|.+|.+||||++++.+..+...                                         
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~-----------------------------------------   53 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVE-----------------------------------------   53 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEE-----------------------------------------
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccc-----------------------------------------
Confidence            457899999999999999999999999999987633333                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||+|||+|.|.+....+....|.|+|||++.++++++||++.|++.+.+.+.+||.+|+..|++++++|
T Consensus        54 ~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~W  133 (138)
T 3n5a_A           54 KKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQW  133 (138)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEE
T ss_pred             eEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEE
Confidence            34555555555555555555655544444568999999999999999999999999998889999999999999999999


Q ss_pred             EEccC
Q psy6105         166 YPLME  170 (194)
Q Consensus       166 ~~L~~  170 (194)
                      |+|.|
T Consensus       134 h~L~p  138 (138)
T 3n5a_A          134 HQLKA  138 (138)
T ss_dssp             EECBC
T ss_pred             eecCC
Confidence            99975

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.95  E-value=1.3e-26  Score=168.28  Aligned_cols=124  Identities=31%  Similarity=0.585  Sum_probs=96.3

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..|.+||||+|++.+++....                                         
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~-----------------------------------------   67 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS-----------------------------------------   67 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEE-----------------------------------------
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEec-----------------------------------------
Confidence            457889999999999999999999999999987532222                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|+++++++||+|||+|.|.+...++....|.|+|||++.++++++||++.|++...+.+.+||.+|+..|++.+++|
T Consensus        68 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~~~~~~W  147 (153)
T 1w15_A           68 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKW  147 (153)
T ss_dssp             EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEE
T ss_pred             eEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCCCeeeec
Confidence            44555555566666666666666555555568999999999999999999999999998888999999999999999999


Q ss_pred             EEccC
Q psy6105         166 YPLME  170 (194)
Q Consensus       166 ~~L~~  170 (194)
                      |+|.+
T Consensus       148 h~L~~  152 (153)
T 1w15_A          148 HMLCD  152 (153)
T ss_dssp             EECBC
T ss_pred             ccccc
Confidence            99975

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.94  E-value=8.8e-27  Score=170.28  Aligned_cols=129  Identities=35%  Similarity=0.701  Sum_probs=104.1

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+++.+++|++|+++|..|.+||||+|++.+++....                                         
T Consensus        24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~-----------------------------------------   62 (159)
T 1tjx_A           24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK-----------------------------------------   62 (159)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE-----------------------------------------
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceec-----------------------------------------
Confidence            457899999999999999999999999999987533333                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|+++++++||+|||+|.|.+..+++....|.|+|||++.++++++||++.|++...+.+.+||.+|+..|++.+++|
T Consensus        63 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W  142 (159)
T 1tjx_A           63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW  142 (159)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEE
T ss_pred             eeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeE
Confidence            34555555555555555555555444444458999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCC
Q psy6105         166 YPLMETVPGQ  175 (194)
Q Consensus       166 ~~L~~~~~~~  175 (194)
                      |+|.+..++.
T Consensus       143 ~~L~~~~~~~  152 (159)
T 1tjx_A          143 HTLQVEEEVD  152 (159)
T ss_dssp             EECBCHHHHH
T ss_pred             EECcCccccc
Confidence            9999866543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.94  E-value=4.6e-26  Score=167.63  Aligned_cols=126  Identities=28%  Similarity=0.448  Sum_probs=101.4

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..|.+||||+|++.++.+...                                         
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~-----------------------------------------   74 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKA-----------------------------------------   74 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CC-----------------------------------------
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccc-----------------------------------------
Confidence            457899999999999999999999999999987522222                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|+++++++||+|||+|.|.+..+++....|.|+|||++.++++++||++.|++...+.+.+||.+|+..+++.+++|
T Consensus        75 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~W  154 (166)
T 2cm5_A           75 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERW  154 (166)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEE
T ss_pred             eEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEe
Confidence            44555555566666666666665544444568999999999999999999999999999889999999999999999999


Q ss_pred             EEccCCC
Q psy6105         166 YPLMETV  172 (194)
Q Consensus       166 ~~L~~~~  172 (194)
                      |.|.+..
T Consensus       155 h~L~~~~  161 (166)
T 2cm5_A          155 HQLQNEN  161 (166)
T ss_dssp             EECBC--
T ss_pred             eECCCcc
Confidence            9998854

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=8.4e-23  Score=148.64  Aligned_cols=113  Identities=16%  Similarity=0.173  Sum_probs=83.9

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCC-eEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...+++.++.|++|+++|.+|.+||||++++.+.. ....++                                      
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~--------------------------------------   83 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLF--------------------------------------   83 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEE--------------------------------------
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccce--------------------------------------
Confidence            45789999999999999999999999999998731 111234                                      


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                         +|+++++++||+|||+|.|.+..+++....|.|+|||+|.++++++||++.|++..+.           ..+....+
T Consensus        84 ---kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~-----------~~~~~~~~  149 (155)
T 2z0u_A           84 ---RTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC-----------RSGERSTR  149 (155)
T ss_dssp             ---ECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSC-----------TTCCCEEE
T ss_pred             ---eCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHcc-----------CCCCcccc
Confidence               4444555555555555555544333344589999999999999999999999998763           12567789


Q ss_pred             EEEccC
Q psy6105         165 WYPLME  170 (194)
Q Consensus       165 W~~L~~  170 (194)
                      ||+|++
T Consensus       150 W~~L~~  155 (155)
T 2z0u_A          150 WYNLLS  155 (155)
T ss_dssp             EEEEBC
T ss_pred             ceEccC
Confidence            999975

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.87  E-value=4.1e-22  Score=141.59  Aligned_cols=114  Identities=17%  Similarity=0.331  Sum_probs=83.8

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.++.|++|+. |.+|.+||||+|++.+++....                                         
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~-----------------------------------------   56 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTS-----------------------------------------   56 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCC-----------------------------------------
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCc-----------------------------------------
Confidence            3468999999999997 7889999999999987532223                                         


Q ss_pred             EeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|+++++++||+|||+|.|. +..+++....|.|+|||++.++++++||++.|++..+.            .+....+
T Consensus        57 ~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~------------~~~~~~~  124 (134)
T 2b3r_A           57 KRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFN------------LSKETVK  124 (134)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSC------------TTSCEEE
T ss_pred             eecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhcc------------CCCCcce
Confidence            3455555555555555555555 44333344689999999999999999999999998763            2567899


Q ss_pred             EEEccCCCC
Q psy6105         165 WYPLMETVP  173 (194)
Q Consensus       165 W~~L~~~~~  173 (194)
                      ||+|.+...
T Consensus       125 W~~L~~~~~  133 (134)
T 2b3r_A          125 WYQLTAATY  133 (134)
T ss_dssp             EEECBC---
T ss_pred             eEECCCccC
Confidence            999987653

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.87  E-value=3.5e-21  Score=139.47  Aligned_cols=137  Identities=23%  Similarity=0.291  Sum_probs=94.9

Q ss_pred             CCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeE
Q psy6105           4 KGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKR   83 (194)
Q Consensus         4 ~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~   83 (194)
                      .....+++.+++|++|+++|..|.+||||++++.+...                                        ..
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------------------~~   56 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMN----------------------------------------GV   56 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTT----------------------------------------EE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC----------------------------------------cc
Confidence            45668999999999999999999999999999985410                                        01


Q ss_pred             eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                      ..+++|+++++++||+|||+|.|.+...   ...|.|+|||++.++++++||++.|++..+..+..+.      -.....
T Consensus        57 ~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~------~~~~~~  127 (153)
T 3b7y_A           57 LTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRL------ERPYTF  127 (153)
T ss_dssp             EEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTS------CCCCCC
T ss_pred             ceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcc------cccccc
Confidence            1256777777777777777777777543   2489999999999999999999999999775322110      011235


Q ss_pred             eEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         164 QWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       164 ~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      +||+|.+.....   ...|.+.++++|+|
T Consensus       128 ~w~~L~~~~~~~---~~~G~i~l~l~~~P  153 (153)
T 3b7y_A          128 KDFVLHPRSHKS---RVKGYLRLKMTYLP  153 (153)
T ss_dssp             EEEECBCSSTTC---CCCSEEEEEEEECC
T ss_pred             cccccccccCCC---CcceEEEEEEEEeC
Confidence            999998865322   35678888898876

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.87  E-value=8.7e-22  Score=142.88  Aligned_cols=116  Identities=24%  Similarity=0.483  Sum_probs=88.6

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..|++.+++|++|+++| .|.+||||+|++.+......                                         
T Consensus        26 ~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~-----------------------------------------   63 (153)
T 3fbk_A           26 DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLR-----------------------------------------   63 (153)
T ss_dssp             SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTT-----------------------------------------
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCcc-----------------------------------------
Confidence            457899999999999999 79999999999987522222                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCC-CceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS-DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~-~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|+++++++||+|||+|.|.+...++.. .|.|+|||++.+++ +++||++.|++..           +..++....+
T Consensus        64 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~L~i~V~d~d~~~~~d~~lG~~~i~l~~-----------l~~~~~~~~~  131 (153)
T 3fbk_A           64 HQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSFGVKS-----------LLTPDKEISG  131 (153)
T ss_dssp             CEECCCCTTCSSCEEEEEEEEECCGGGTTS-EEEEEEEECCSSGGGCEEEEEEEEEHHH-----------HTC--CCEEE
T ss_pred             EEeccccCCCCCCccccEEEEecccHHhCC-EEEEEEEeCCCCCCCCcEEEEEEEEHHH-----------hcCCCCcccc
Confidence            456666666667777776777665545544 59999999999876 8999999999963           3445788999


Q ss_pred             EEEccCCCCCC
Q psy6105         165 WYPLMETVPGQ  175 (194)
Q Consensus       165 W~~L~~~~~~~  175 (194)
                      ||+|++...+.
T Consensus       132 W~~L~~~~~g~  142 (153)
T 3fbk_A          132 WYYLLGEHLGR  142 (153)
T ss_dssp             EEECBCTTGGG
T ss_pred             EEECCChhhcc
Confidence            99999977654

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.86  E-value=3.5e-22  Score=144.09  Aligned_cols=118  Identities=23%  Similarity=0.428  Sum_probs=88.0

Q ss_pred             ceeEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      +..+++.+++|++|+++| ..|.+||||++++.++.....                                        
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~----------------------------------------   61 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQG----------------------------------------   61 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGG----------------------------------------
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccC----------------------------------------
Confidence            457999999999999998 689999999999987622122                                        


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                       +++|+++++++||+|||+|.|.+...++....|.|+|||++.++++++||++.|++..+..            +....+
T Consensus        62 -~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~  128 (148)
T 3fdw_A           62 -KRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKL------------DKKLDH  128 (148)
T ss_dssp             -EEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHH------------HCCSEE
T ss_pred             -ccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccc------------cCCccc
Confidence             4556666666666666666666666655556899999999999999999999999975421            345679


Q ss_pred             EEEccCCCCCCc
Q psy6105         165 WYPLMETVPGQI  176 (194)
Q Consensus       165 W~~L~~~~~~~~  176 (194)
                      ||+|++....+.
T Consensus       129 W~~L~~~~~~~~  140 (148)
T 3fdw_A          129 CLPLHGKISAES  140 (148)
T ss_dssp             EEECBCC-----
T ss_pred             eEECcCcccccc
Confidence            999999765543

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=5.5e-21  Score=136.39  Aligned_cols=129  Identities=26%  Similarity=0.304  Sum_probs=94.8

Q ss_pred             CCCCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCC
Q psy6105           2 SSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG   81 (194)
Q Consensus         2 ~~~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~   81 (194)
                      ||.....+++.+++|++|+.+|. |.+||||++++...     +++|+++++++||+|||.|.|.               
T Consensus         2 ~s~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~---------------   60 (140)
T 2dmh_A            2 SSGSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDE-----KKKTKKVDNELNPVWNEILEFD---------------   60 (140)
T ss_dssp             CSCBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSC-----EEECCCCCSCSSCEEEEEEEEE---------------
T ss_pred             CCCCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCE-----eEEeeeecCCCCCccCcEEEEE---------------
Confidence            56677799999999999999998 99999999998754     4566666666666666665554               


Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCC
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQ  160 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~  160 (194)
                                                +....+ ....|.|+|||++.++++++||++.|++..+.            .+.
T Consensus        61 --------------------------v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~------------~~~  102 (140)
T 2dmh_A           61 --------------------------LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLT------------GDQ  102 (140)
T ss_dssp             --------------------------CSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTC------------SSS
T ss_pred             --------------------------ecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhc------------cCC
Confidence                                      332211 23589999999999999999999999998663            255


Q ss_pred             ceEeEEE---ccCCCCCCccccCCCCcceeeeecCC
Q psy6105         161 PVTQWYP---LMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       161 ~~~~W~~---L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      ....||+   |.+....  .  ..|.+.+++.+.|.
T Consensus       103 ~~~~w~~l~~l~~~~~~--~--~~G~l~l~~~~~p~  134 (140)
T 2dmh_A          103 SRSLPYKLISLLNEKGQ--D--TGATIDLVIGYDPP  134 (140)
T ss_dssp             CEEEEEEEEEEECTTCC--E--EEEEEEEEEEECCC
T ss_pred             CceeEEeeeeccCCCCC--C--CCCEEEEEEEEECC
Confidence            6788998   5443211  1  23677777888764

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.86  E-value=1.8e-20  Score=138.92  Aligned_cols=137  Identities=21%  Similarity=0.266  Sum_probs=90.9

Q ss_pred             CCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCC-eEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCe
Q psy6105           4 KGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEG-KRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGK   82 (194)
Q Consensus         4 ~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~-~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~   82 (194)
                      ..+..|++.+++|++|+++|..|.+||||+|++.+.. +...                                      
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~--------------------------------------   46 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILT--------------------------------------   46 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEE--------------------------------------
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCccc--------------------------------------
Confidence            3567899999999999999999999999999998641 1112                                      


Q ss_pred             EeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCce
Q psy6105          83 RIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPV  162 (194)
Q Consensus        83 ~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~  162 (194)
                         +++|+++++++||+|||+|.|.+....   ..|.|+|||++.++++++||++.|+|..+..+..+..      ....
T Consensus        47 ---~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~------~~~~  114 (176)
T 3m7f_B           47 ---SVQTKTIKKSLNPKWNEEILFRVLPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRME------RPYT  114 (176)
T ss_dssp             ---EEECCCCSSCSSCEEEEEEEEEECTTT---CEEEEEEEECC----CEEEEEEEEESCSCCBC------------CCC
T ss_pred             ---ceeCceECCCCCCcccceEEEEEcCCC---CEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCccc------cccc
Confidence               445555555666666666666655322   4899999999999999999999999998753221110      1112


Q ss_pred             EeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         163 TQWYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       163 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      .+||+|.+.....+   ..|.+.+++.|+|.
T Consensus       115 ~~w~~L~~~~~~~~---~~G~l~l~l~~~p~  142 (176)
T 3m7f_B          115 FKDFVLHPRSHKSR---VKGYLRLKMTYLPK  142 (176)
T ss_dssp             CEEEECBCSSTTCC---CCSEEEEEEEECC-
T ss_pred             ccEEEccccCCCCc---cCEEEEEEEEEEeC
Confidence            38999998665433   56788888998874

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=1.3e-20  Score=134.32  Aligned_cols=110  Identities=16%  Similarity=0.213  Sum_probs=82.3

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..|++.++.|+   ++|.+|.+||||+|++.+..+                                          ..+
T Consensus        26 ~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~------------------------------------------~~~   60 (138)
T 1wfm_A           26 AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTG------------------------------------------SVE   60 (138)
T ss_dssp             TEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTE------------------------------------------EEE
T ss_pred             CEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCC------------------------------------------ccc
Confidence            45667777777   356677777777777765310                                          124


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      ++|+++++++||+|||+|.|.+..+++....|.|+|||+|.++++++||++.|+|..+.            .+....+||
T Consensus        61 ~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~------------~~~~~~~W~  128 (138)
T 1wfm_A           61 AQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS------------VPLGAAQWG  128 (138)
T ss_dssp             EECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSS------------SCTTCCEEE
T ss_pred             EecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEccccc------------Cccccccee
Confidence            56777777777888888888877777666799999999999999999999999999773            245678999


Q ss_pred             EccCCCC
Q psy6105         167 PLMETVP  173 (194)
Q Consensus       167 ~L~~~~~  173 (194)
                      +|.+...
T Consensus       129 ~L~~~~~  135 (138)
T 1wfm_A          129 ELKTSGP  135 (138)
T ss_dssp             ECCCCSC
T ss_pred             eCcCCCc
Confidence            9998644

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.85  E-value=1e-20  Score=136.29  Aligned_cols=123  Identities=26%  Similarity=0.379  Sum_probs=88.4

Q ss_pred             CCCCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCC
Q psy6105           2 SSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG   81 (194)
Q Consensus         2 ~~~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~   81 (194)
                      ++.++..+++.+++|++|+++|..|.+||||++.+...     +.+|+++++|+||.|||.|.                 
T Consensus        12 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~~~~~t~nP~Wne~f~-----------------   69 (148)
T 3kwu_A           12 TSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKT-----KKRTKTIYGNLNPVWEENFH-----------------   69 (148)
T ss_dssp             ---CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTE-----EEECCCCCSCSSCEEEEEEE-----------------
T ss_pred             ccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCE-----EEECCccCCCCCCCcccEEE-----------------
Confidence            46778999999999999999999999999999998432     44555555555555555554                 


Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC-----------CCCceeEEEEeCCCCCCcchhh
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI-----------GSDELMGCTAIGSSFIGIGRDH  150 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~-----------~~~~~iG~~~i~l~~~~~~~~~  150 (194)
                                              |.+....   ..|.|+|||++.+           +++++||++.|++..+      
T Consensus        70 ------------------------f~v~~~~---~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l------  116 (148)
T 3kwu_A           70 ------------------------FECHNSS---DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL------  116 (148)
T ss_dssp             ------------------------EEECSTT---CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC------
T ss_pred             ------------------------EEecCCC---CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC------
Confidence                                    4443221   3799999999986           7899999999999866      


Q ss_pred             HHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeee
Q psy6105         151 WLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSC  190 (194)
Q Consensus       151 W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~  190 (194)
                              .....+||+|.+......   ..|.+.+++++
T Consensus       117 --------~~~~~~w~~L~~~~~~~~---~~G~i~l~l~~  145 (148)
T 3kwu_A          117 --------SGEMDVWYNLDKRTDKSA---VSGAIRLHISV  145 (148)
T ss_dssp             --------CSEEEEEEECBCSSTTCC---CCCEEEEEEEE
T ss_pred             --------cCCCCEEEEcccCCCCCC---CceEEEEEEEE
Confidence                    345679999987543332   33556555654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.85  E-value=5.8e-21  Score=141.02  Aligned_cols=112  Identities=28%  Similarity=0.468  Sum_probs=82.6

Q ss_pred             eeEEEeeccCCCCCCCCC-CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           7 RSFRADNYCRPTIGNRSI-PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~-~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ..+++.++.|++|+++|. .|.+||||+|++.++.....+++|+++++|+||+|||+|.                     
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~---------------------   88 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV---------------------   88 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEE---------------------
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEE---------------------
Confidence            458899999999999995 7999999999998764333445555555555555555554                     


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEE-ecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVI-DYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~-d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                                          |.+...   ...|.|+|| |++.++++++||++.|++..+.            .+....+
T Consensus        89 --------------------f~v~~~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~------------~~~~~~~  133 (171)
T 2q3x_A           89 --------------------FDESPQ---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELD------------LSSMVIG  133 (171)
T ss_dssp             --------------------CSSCCT---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSC------------TTSCEEE
T ss_pred             --------------------EEecCC---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcc------------cCCCcce
Confidence                                444222   258999999 9999999999999999998763            2567899


Q ss_pred             EEEccCCCCC
Q psy6105         165 WYPLMETVPG  174 (194)
Q Consensus       165 W~~L~~~~~~  174 (194)
                      ||+|.+....
T Consensus       134 W~~L~~~~~~  143 (171)
T 2q3x_A          134 WYKLFPPSSL  143 (171)
T ss_dssp             EEECBCGGGG
T ss_pred             eEECCCcccc
Confidence            9999987653

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=4e-21  Score=139.19  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=84.0

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..|.+||||+|++.++.  ..+.+|+++++|+||+|||+|.                     
T Consensus        41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~---------------------   97 (152)
T 1rsy_A           41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKKFETKVHRKTLNPVFNEQFT---------------------   97 (152)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC--CSCEECCCCTTCSSCEEEEEEE---------------------
T ss_pred             CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCC--CceEeccccCCCCCCcCcccEE---------------------
Confidence            45789999999999999999999999999998752  2244555555555555555554                     


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                                          |.+..+++....|.|+|||++.++++++||++.|++..+.            .+....+|
T Consensus        98 --------------------f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W  145 (152)
T 1rsy_A           98 --------------------FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEW  145 (152)
T ss_dssp             --------------------ECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEE
T ss_pred             --------------------EeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhcc------------CCCCcceE
Confidence                                4443333333589999999999999999999999998763            25678999


Q ss_pred             EEccCC
Q psy6105         166 YPLMET  171 (194)
Q Consensus       166 ~~L~~~  171 (194)
                      |+|++.
T Consensus       146 ~~L~~~  151 (152)
T 1rsy_A          146 RDLQSA  151 (152)
T ss_dssp             EECBCC
T ss_pred             EECCCC
Confidence            999874

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=7.9e-21  Score=135.86  Aligned_cols=114  Identities=28%  Similarity=0.499  Sum_probs=84.7

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..|.+||||++++.++.  ..+.+|+                                    
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~------------------------------------   66 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK--KHKLETK------------------------------------   66 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCC--SSEEECC------------------------------------
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCC--CccEeCc------------------------------------
Confidence            45789999999999999999999999999998651  1234444                                    


Q ss_pred             EeeceeecCCCCCcccceEEEEe-cCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDV-PASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                           ++++++||+|||+|.|.+ +.+.+....|.|+|||++.++++++||++.|++..+..            +.....
T Consensus        67 -----v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~------------~~~~~~  129 (141)
T 2d8k_A           67 -----VKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL------------TQMQTF  129 (141)
T ss_dssp             -----CCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCT------------TSCEEE
T ss_pred             -----eEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcC------------CCCccE
Confidence                 444455555555555542 21222345899999999999999999999999997742            456789


Q ss_pred             EEEccCCCCC
Q psy6105         165 WYPLMETVPG  174 (194)
Q Consensus       165 W~~L~~~~~~  174 (194)
                      ||+|.+...+
T Consensus       130 W~~L~~~~~~  139 (141)
T 2d8k_A          130 WKDLKPSGPS  139 (141)
T ss_dssp             EECCEECCCC
T ss_pred             EEECcCCCCC
Confidence            9999987543

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.84  E-value=5.7e-22  Score=141.87  Aligned_cols=123  Identities=26%  Similarity=0.413  Sum_probs=93.6

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.+++|++|+++|..|.+||||+|++.+..+     +..++                           ..+....+
T Consensus        18 ~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~-----~~~~~---------------------------~~~~~~~~   65 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRG-----QVMVV---------------------------QNASAEYK   65 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSC-----CCEEC---------------------------CCCCHHHH
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCC-----ccccc---------------------------ccccccce
Confidence            46899999999999999999999999999987511     00000                           01111125


Q ss_pred             eeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      ++|+++++++||+|||+|.|. +..+++....|.|+|||++.++++++||++.|++..+..            +....+|
T Consensus        66 ~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W  133 (142)
T 1rh8_A           66 RRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH------------LDNTPRW  133 (142)
T ss_dssp             TTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG------------GTTCCEE
T ss_pred             eeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEecccccc------------CCCCCeE
Confidence            678888888888888888886 554444456999999999999999999999999987642            3456799


Q ss_pred             EEccCCCC
Q psy6105         166 YPLMETVP  173 (194)
Q Consensus       166 ~~L~~~~~  173 (194)
                      |+|.+..+
T Consensus       134 ~~L~~~~~  141 (142)
T 1rh8_A          134 YPLKEQTE  141 (142)
T ss_dssp             EECBCCCC
T ss_pred             EECCccCC
Confidence            99988654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.84  E-value=4.1e-21  Score=137.12  Aligned_cols=116  Identities=22%  Similarity=0.356  Sum_probs=89.3

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..|.+||||+|++.++.....                                         
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~-----------------------------------------   58 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN-----------------------------------------   58 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSS-----------------------------------------
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCc-----------------------------------------
Confidence            457899999999999999999999999999976521111                                         


Q ss_pred             EeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCC--CceeEEEEeCCCCCCcchhhHHHHhhCCCCce
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGS--DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPV  162 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~--~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~  162 (194)
                      +++|+++++++||+|||+|.|. +..+++....|.|+|||++.+++  +++||++.|++..+.             ....
T Consensus        59 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~-------------~~~~  125 (141)
T 1v27_A           59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-------------LDDE  125 (141)
T ss_dssp             CCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCC-------------CSSE
T ss_pred             ceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccC-------------CCCC
Confidence            4566666666777777777776 34344455699999999999887  999999999998653             2237


Q ss_pred             EeEEEccCCCCCC
Q psy6105         163 TQWYPLMETVPGQ  175 (194)
Q Consensus       163 ~~W~~L~~~~~~~  175 (194)
                      .+||+|.+...+.
T Consensus       126 ~~W~~L~~~~~g~  138 (141)
T 1v27_A          126 PHWYKLQTHDSGP  138 (141)
T ss_dssp             EEEEECBCCSSCC
T ss_pred             CceEECcccccCC
Confidence            8999999877654

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.84  E-value=4.8e-21  Score=137.25  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=84.1

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..|.+||||++++.++.  ..+.+|++++                                 
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~---------------------------------   77 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKKFETKVHR---------------------------------   77 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCC--SCCEECCCCC---------------------------------
T ss_pred             CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCC--CccEECccCc---------------------------------
Confidence            45789999999999999999999999999998752  2234444444                                 


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                              ++.||+|||+|.|.+...++....|.|+|||++.++++++||++.|+|..+.            .+....+|
T Consensus        78 --------~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W  137 (143)
T 3f04_A           78 --------KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEW  137 (143)
T ss_dssp             --------SCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------TTSCEEEE
T ss_pred             --------CCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHcc------------CCCCcceE
Confidence                    4455555555555544333334589999999999999999999999998764            36678899


Q ss_pred             EEccCC
Q psy6105         166 YPLMET  171 (194)
Q Consensus       166 ~~L~~~  171 (194)
                      |+|++.
T Consensus       138 ~~L~~~  143 (143)
T 3f04_A          138 RDLQSA  143 (143)
T ss_dssp             EECBCC
T ss_pred             EECcCC
Confidence            999863

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=9.5e-21  Score=133.28  Aligned_cols=111  Identities=22%  Similarity=0.356  Sum_probs=77.2

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+++.+++|++|+++|..|.+||||++++.+++....+.+|+++++|+||.|||+|.|.+                  
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~------------------   78 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP------------------   78 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECS------------------
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEcc------------------
Confidence            45789999999999999999999999999998763233345555555555555555555431                  


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCC--CceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS--DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~--~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                                            +..+++....|.|+|||++.+++  +++||++.+++..+.             .....
T Consensus        79 ----------------------~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~-------------~~~~~  123 (129)
T 2bwq_A           79 ----------------------VHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-------------LDDEP  123 (129)
T ss_dssp             ----------------------CCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCC-------------CSSCE
T ss_pred             ----------------------CCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccC-------------CCcCC
Confidence                                  12223334589999999999887  999999999998653             12278


Q ss_pred             eEEEcc
Q psy6105         164 QWYPLM  169 (194)
Q Consensus       164 ~W~~L~  169 (194)
                      +||+|+
T Consensus       124 ~W~~Lq  129 (129)
T 2bwq_A          124 HWYKLQ  129 (129)
T ss_dssp             EEEECC
T ss_pred             ccEECc
Confidence            999985

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=3.7e-21  Score=138.86  Aligned_cols=114  Identities=25%  Similarity=0.412  Sum_probs=85.8

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.+++|++|+++|..|.+||||+|++.++.....                                         +
T Consensus        31 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~-----------------------------------------~   69 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES-----------------------------------------K   69 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSS-----------------------------------------C
T ss_pred             CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcc-----------------------------------------e
Confidence            46899999999999999999999999999987522122                                         4


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      ++|+++++++||+|||+|.|.+...++. ..|.|+|||++.++++++||++.|++..+          .   .....+||
T Consensus        70 ~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~l----------~---~~~~~~W~  135 (149)
T 1a25_A           70 QKTKTIKCSLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISEL----------Q---KAGVDGWF  135 (149)
T ss_dssp             EECCCCSSCSSCEEEEEEEEECCSGGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHHH----------T---TCCEEEEE
T ss_pred             EecceeCCCCCCcCCcEEEEEeccccCC-CEEEEEEEECCCCCCCCEEEEEEEEHHHh----------C---cCccCCeE
Confidence            4555555666666666666665443332 47999999999999999999999999743          2   23578999


Q ss_pred             EccCCCCCC
Q psy6105         167 PLMETVPGQ  175 (194)
Q Consensus       167 ~L~~~~~~~  175 (194)
                      +|.+...++
T Consensus       136 ~L~~~~~g~  144 (149)
T 1a25_A          136 KLLSQEEGE  144 (149)
T ss_dssp             ECBCHHHHT
T ss_pred             EccCCCCCc
Confidence            998865443

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=5.9e-21  Score=136.61  Aligned_cols=113  Identities=25%  Similarity=0.378  Sum_probs=81.9

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..| +||||+|++.++.....++                                       
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~---------------------------------------   62 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR---------------------------------------   62 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCE---------------------------------------
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcc---------------------------------------
Confidence            457899999999999999999 9999999998763222334                                       


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCC--CceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS--DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~--~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                        +|+++++++||+|||+|.|.+..+++....|.|+|||++.+++  +++||++.|++..+..            +....
T Consensus        63 --kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~------------~~~~~  128 (142)
T 2dmg_A           63 --KTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL------------AKGWT  128 (142)
T ss_dssp             --ECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTT------------TTCBC
T ss_pred             --cCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccc------------ccccc
Confidence              4444445555555555555543333333589999999998763  5799999999987632            44678


Q ss_pred             eEEEccCCC
Q psy6105         164 QWYPLMETV  172 (194)
Q Consensus       164 ~W~~L~~~~  172 (194)
                      +||+|.+..
T Consensus       129 ~W~~L~~~~  137 (142)
T 2dmg_A          129 QWYDLTEDS  137 (142)
T ss_dssp             CBCCCBCSC
T ss_pred             ceeeccCCC
Confidence            999998764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.83  E-value=1.3e-20  Score=133.48  Aligned_cols=122  Identities=17%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             CCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeE
Q psy6105           4 KGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKR   83 (194)
Q Consensus         4 ~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~   83 (194)
                      .....+++.+++|++|+++|..|.+||||++.+.+.     +.+|+++++|+||.                         
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~~~~~t~nP~-------------------------   59 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGND-----RLQTHTVYKNLNPE-------------------------   59 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTE-----EEECCCCSSCSSCC-------------------------
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCE-----EEEeeeecCCCCCc-------------------------
Confidence            345678999999999999999999999999998653     34455555555554                         


Q ss_pred             eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                                      |||+|.|.+...   ...|.|+|||++.++++++||++.+++..+..              ...
T Consensus        60 ----------------wne~f~f~~~~~---~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~--------------~~~  106 (133)
T 2ep6_A           60 ----------------WNKVFTFPIKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD--------------GQP  106 (133)
T ss_dssp             ----------------CCEEEEEEESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGCCS--------------SCC
T ss_pred             ----------------cccEEEEEecCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHccC--------------CCc
Confidence                            555455544321   24799999999999899999999999987632              225


Q ss_pred             eEEEccCCCCCCccccCCCCcceeeeec
Q psy6105         164 QWYPLMETVPGQIPLSHSSNLPSSLSCL  191 (194)
Q Consensus       164 ~W~~L~~~~~~~~~~~~~~~~~~~~~~~  191 (194)
                      +||+|.+...+.   ...|.+.++++++
T Consensus       107 ~w~~L~~~~~~~---~~~G~i~l~i~~~  131 (133)
T 2ep6_A          107 NCYVLKNKDLEQ---AFKGVIYLEMDLI  131 (133)
T ss_dssp             EECCCBCSCTTS---CCSSEEEEEEEEE
T ss_pred             eEEEeecCCCCC---ccceEEEEEEEEE
Confidence            899998765432   2445666656553

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=135.95  Aligned_cols=105  Identities=21%  Similarity=0.269  Sum_probs=78.6

Q ss_pred             eeEEEeeccCCCCCCCCC----------CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEE
Q psy6105           7 RSFRADNYCRPTIGNRSI----------PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVY   76 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~----------~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~   76 (194)
                      -.|+++++.|++|+++|.          .|.+||||+|.+...    +..+|+++++|+||+|||+|.|.          
T Consensus        29 g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~----~~~kT~v~~ktlnP~WNE~F~f~----------   94 (157)
T 2fk9_A           29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV----RVGQTSTKQKTNKPTYNEEFCAN----------   94 (157)
T ss_dssp             EEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTE----EEEECCCCSSCSSCEEEEEEEEE----------
T ss_pred             cEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCE----eeEEeeecCCCCCCccCcEEEEE----------
Confidence            368999999999999984          367899999988542    23566666666666666666643          


Q ss_pred             EEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhh
Q psy6105          77 LVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLD  156 (194)
Q Consensus        77 l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~  156 (194)
                                                     +..    ...|.|+|||++.++++++||++.|++.          +++.
T Consensus        95 -------------------------------v~~----~~~L~~~V~D~d~~~~dd~iG~~~i~l~----------~l~~  129 (157)
T 2fk9_A           95 -------------------------------VTD----GGHLELAVFHETPLGYDHFVANCTLQFQ----------ELLR  129 (157)
T ss_dssp             -------------------------------EEE----ECEEEEEEEECCSSSSCEEEEEEEEEHH----------HHHH
T ss_pred             -------------------------------cCC----CCEEEEEEEECCCCCCCCEEEEEEEEHH----------Hhhc
Confidence                                           321    1278899999999999999999999986          3443


Q ss_pred             C--CCCceEeEEEccC
Q psy6105         157 N--PRQPVTQWYPLME  170 (194)
Q Consensus       157 ~--p~~~~~~W~~L~~  170 (194)
                      .  ++.....||+|.+
T Consensus       130 ~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A          130 TTGASDTFEGWVDLEP  145 (157)
T ss_dssp             HHTTCSEEEEEEECBS
T ss_pred             ccCCCCcccEEEECCC
Confidence            3  4577899999965

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.82  E-value=2.2e-20  Score=132.60  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=92.1

Q ss_pred             CCCCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEec-CCCCceeeeeEEEecCCCceeEEEEEcC
Q psy6105           2 SSKGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKK-NSLNPFYNEALLFDVPANPYVKVYLVCE   80 (194)
Q Consensus         2 ~~~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~-~t~nP~w~e~f~f~~~~dpyv~v~l~~~   80 (194)
                      |......+++.+++|++|+++|..|.+||||+|++.+.     +.+|++++ +++||.|||+|.                
T Consensus         5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~~~~~~~~nP~Wne~f~----------------   63 (136)
T 1wfj_A            5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-----DQKSNVAEGMGTTPEWNETFI----------------   63 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-----EEECCCCTTCCSSCEEEEEEE----------------
T ss_pred             CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCc-----cceeEeccCCCCCCccCcEEE----------------
Confidence            34556779999999999999999999999999998765     34555555 555555555555                


Q ss_pred             CeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCC
Q psy6105          81 GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQ  160 (194)
Q Consensus        81 ~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~  160 (194)
                                               |.+..   ....|.|+|||++.++++++||++.|++..+          +.. +.
T Consensus        64 -------------------------f~v~~---~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l----------~~~-~~  104 (136)
T 1wfj_A           64 -------------------------FTVSE---GTTELKAKIFDKDVGTEDDAVGEATIPLEPV----------FVE-GS  104 (136)
T ss_dssp             -------------------------EEEES---SCCEEEEEECCSSSCTTTCCSEEEEEESHHH----------HHH-SE
T ss_pred             -------------------------EEECC---CCCEEEEEEEECCCCCCCceEEEEEEEHHHh----------ccC-CC
Confidence                                     44432   1248999999999999999999999999733          222 35


Q ss_pred             ceEeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         161 PVTQWYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       161 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      ...+||+|..   +   ....|.+.+++.+.|.
T Consensus       105 ~~~~w~~L~~---~---~~~~G~i~l~l~~~p~  131 (136)
T 1wfj_A          105 IPPTAYNVVK---D---EEYKGEIWVALSFKPS  131 (136)
T ss_dssp             EEEEEEEEEE---T---TEEEEEEEEEEEEEEC
T ss_pred             CCcEEEEeec---C---CccCEEEEEEEEEEeC
Confidence            5679999981   1   1245677777887764

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.81  E-value=2.9e-19  Score=127.23  Aligned_cols=114  Identities=19%  Similarity=0.368  Sum_probs=83.0

Q ss_pred             ceeEEEeeccCCCCCCCCCC-CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRSIP-SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~-g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...+++.+++|++|+++|.. |.+||||+|++.+++  ..+.+|+++++                               
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~--~~~~kT~v~~~-------------------------------   67 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK--KHKVKTRVLRK-------------------------------   67 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT--CSEEECCCCSS-------------------------------
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCC--CceEecCcCcC-------------------------------
Confidence            34689999999999999985 899999999998751  12444444444                               


Q ss_pred             EEeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                                ++||+|||+|.|. ++.+++....|.|+|||++.++++++||++.|++..+..           ......
T Consensus        68 ----------t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-----------~~~~~~  126 (138)
T 1ugk_A           68 ----------TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL-----------SEGKML  126 (138)
T ss_dssp             ----------CSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCC-----------TTCCEE
T ss_pred             ----------CCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccC-----------CCCcch
Confidence                      4555555555553 444444456899999999999999999999999997642           123446


Q ss_pred             eEEEccCCCC
Q psy6105         164 QWYPLMETVP  173 (194)
Q Consensus       164 ~W~~L~~~~~  173 (194)
                      .|+.|++.+.
T Consensus       127 ~~~~l~~~~~  136 (138)
T 1ugk_A          127 MNREIISGPS  136 (138)
T ss_dssp             EEEECBSSSS
T ss_pred             hhhhhhcCCC
Confidence            7899987543

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.81  E-value=2.2e-20  Score=132.84  Aligned_cols=118  Identities=16%  Similarity=0.248  Sum_probs=82.6

Q ss_pred             ceeEEEeeccCCCCCCCCCCCC-----------CCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSV-----------ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVK   74 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~-----------~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~   74 (194)
                      +..+++.++.|++|+++|..|.           +||||+|.+...    ...+|+++++|+||.|||.|.          
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~----~~~~T~~~~~t~nP~WnE~f~----------   70 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS----RIGQTATKQKTNSPAWHDEFV----------   70 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTE----EEEECCCCSSCSSCEEEEEEE----------
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCe----EeeeeeEECCCcCCccCCEEE----------
Confidence            4578999999999999986544           888888887421    234555555555555555554          


Q ss_pred             EEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHH
Q psy6105          75 VYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEM  154 (194)
Q Consensus        75 v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~  154 (194)
                                                     |.+...    ..|.|+|||++.++++++||++.|++.          ++
T Consensus        71 -------------------------------f~v~~~----~~L~~~V~d~d~~~~dd~iG~~~i~l~----------~l  105 (136)
T 1gmi_A           71 -------------------------------TDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFE----------EL  105 (136)
T ss_dssp             -------------------------------EEEEEE----CEEEEEEEECCSSSSCEEEEEEEEEHH----------HH
T ss_pred             -------------------------------EEecCC----CEEEEEEEeCCCCCCCCEEEEEEEEHH----------Hh
Confidence                                           444321    378999999999999999999999996          44


Q ss_pred             hhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         155 LDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       155 l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      +..+......|++|.+          .|.+.+++.+.+
T Consensus       106 ~~~~~~~~~~w~~L~~----------~G~i~l~l~~~~  133 (136)
T 1gmi_A          106 LQNGSRHFEDWIDLEP----------EGKVYVIIDLSG  133 (136)
T ss_dssp             TSTTCSEEEEEEECBS----------SCEEEEEEEEEE
T ss_pred             cccCCCCccEEEEcCC----------CeEEEEEEEEEe
Confidence            4444556789999965          245566666543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=9e-20  Score=131.22  Aligned_cols=113  Identities=19%  Similarity=0.390  Sum_probs=82.5

Q ss_pred             ceeEEEeeccCCCCCCC-CCC------CCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEE
Q psy6105           6 SRSFRADNYCRPTIGNR-SIP------SVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLV   78 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~-d~~------g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~   78 (194)
                      ...+++.+++|++|+++ |.+      |.+||||+|++.++.  ..                                  
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~--~~----------------------------------   68 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ--KN----------------------------------   68 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCC--SS----------------------------------
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCC--Cc----------------------------------
Confidence            34789999999999984 544      589999999998751  11                                  


Q ss_pred             cCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCC
Q psy6105          79 CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNP  158 (194)
Q Consensus        79 ~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p  158 (194)
                             +++|+++++++||+|||+|.|.+..+++....|.|+|||++.++++++||++.|++..+..            
T Consensus        69 -------~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~------------  129 (147)
T 2enp_A           69 -------SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL------------  129 (147)
T ss_dssp             -------CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCT------------
T ss_pred             -------ceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCC------------
Confidence                   3355555555666666666665544333335899999999999999999999999987632            


Q ss_pred             CCceEeEEEccCCCC
Q psy6105         159 RQPVTQWYPLMETVP  173 (194)
Q Consensus       159 ~~~~~~W~~L~~~~~  173 (194)
                      ......||.|.+..+
T Consensus       130 ~~~~~~w~~L~~~~~  144 (147)
T 2enp_A          130 VKGGHWWKALIPSGP  144 (147)
T ss_dssp             TTCCCEEECCBCCCC
T ss_pred             CCCccEEEEeecCCC
Confidence            344578999997643

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=9.8e-20  Score=127.54  Aligned_cols=108  Identities=20%  Similarity=0.310  Sum_probs=80.7

Q ss_pred             CceeEEEeeccCCCCCCC---CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCC
Q psy6105           5 GSRSFRADNYCRPTIGNR---SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG   81 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~---d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~   81 (194)
                      ++..+++.+++|++|+++   |..|.+||||++++.+..  ..                                     
T Consensus         1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~--~~-------------------------------------   41 (126)
T 1rlw_A            1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DS-------------------------------------   41 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TC-------------------------------------
T ss_pred             CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC--Cc-------------------------------------
Confidence            456799999999999984   777999999999997641  12                                     


Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP  161 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~  161 (194)
                          +++|+++++++||+|||+|.|.+....  ...|.|+|||++.++ +++||++.+++..+.            .+..
T Consensus        42 ----~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~------------~~~~  102 (126)
T 1rlw_A           42 ----RKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSMK------------VGEK  102 (126)
T ss_dssp             ----CEECCCCTTCSSCEEEEEEEEEECTTS--CCEEEEEEEECCSSC-CEEEEEEEEEGGGSC------------TTCE
T ss_pred             ----eEEccccCCCCCCcccceEEEEecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHcc------------CCCc
Confidence                345555555555555555555553322  248999999999884 899999999998763            3667


Q ss_pred             eEeEEEccC
Q psy6105         162 VTQWYPLME  170 (194)
Q Consensus       162 ~~~W~~L~~  170 (194)
                      ...||+|.+
T Consensus       103 ~~~~~~L~~  111 (126)
T 1rlw_A          103 KEVPFIFNQ  111 (126)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEcCC
Confidence            789999976

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.80  E-value=1.1e-19  Score=129.87  Aligned_cols=112  Identities=24%  Similarity=0.332  Sum_probs=82.4

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+++.+++|++|+++|..|.+||||++++.+......+.                                       
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~---------------------------------------   68 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL---------------------------------------   68 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEE---------------------------------------
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCccee---------------------------------------
Confidence            45789999999999999999999999999998752222344                                       


Q ss_pred             EeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                        +|+++++++||+|||+|.|. +...++....|.|+|||++.++++++||++.|++..+..            +.....
T Consensus        69 --kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~------------~~~~~~  134 (142)
T 2chd_A           69 --RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA------------NQRKNF  134 (142)
T ss_dssp             --ECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCT------------TCCEEE
T ss_pred             --eCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCC------------CCccEE
Confidence              44445555555555555554 332333334899999999999999999999999987642            556677


Q ss_pred             EEEccC
Q psy6105         165 WYPLME  170 (194)
Q Consensus       165 W~~L~~  170 (194)
                      |.+|..
T Consensus       135 ~~~L~~  140 (142)
T 2chd_A          135 NICLER  140 (142)
T ss_dssp             EEECBC
T ss_pred             EEeccc
Confidence            888865

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.79  E-value=6.1e-19  Score=124.59  Aligned_cols=123  Identities=20%  Similarity=0.300  Sum_probs=84.7

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++.+++|++|+++|..|.+||||++++.+.   ...++|+++++|+||.|||+|.                      
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~---~~~~kT~v~~~t~nP~wne~f~----------------------   59 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS---GQCHSTDTVKNTLDPKWNQHYD----------------------   59 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT---CCEEECCCCSSCSSCEEEEEEE----------------------
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC---CceEECCccCCCCCCCccCEEE----------------------
Confidence            468899999999999999999999999998653   1245555555555555555554                      


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCC---CceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGS---DELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~---~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                                         |.+....    .|.|+|||++.+++   +++||++.|++..+.          . ......
T Consensus        60 -------------------f~v~~~~----~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~----------~-~~~~~~  105 (132)
T 3pyc_A           60 -------------------LYVGKTD----SITISVWNHKKIHKKQGAGFLGCVRLLSNAIS----------R-LKDTGY  105 (132)
T ss_dssp             -------------------EEEETTC----CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHH----------H-HTTSCC
T ss_pred             -------------------EEeCCCC----EEEEEEEECCCCCCCCCCCceEEEEEeHHHhh----------c-ccccCc
Confidence                               4443221    48999999998876   799999999986331          1 133445


Q ss_pred             eEEEccCCCCCCccccCCCCcceeee
Q psy6105         164 QWYPLMETVPGQIPLSHSSNLPSSLS  189 (194)
Q Consensus       164 ~W~~L~~~~~~~~~~~~~~~~~~~~~  189 (194)
                      +|++|....... +....|++.++++
T Consensus       106 ~~~~L~~~~~~~-~~~~~G~i~v~l~  130 (132)
T 3pyc_A          106 QRLDLCKLNPSD-TDAVRGQIVVSLQ  130 (132)
T ss_dssp             EEEECBCSSTTC-CCCCCSEEEEEEE
T ss_pred             EEEeeeecCCCC-CCceeEEEEEEEE
Confidence            899998854322 3344556665554

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=5.9e-19  Score=130.46  Aligned_cols=127  Identities=20%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ....+++.+++|++|++.+..+.+||||+|++.+     .+.+|+++++|+||+                          
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-----~~~kT~v~~~tlnP~--------------------------   82 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-----QSKKTEKCNNTNSPK--------------------------   82 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-----EEEECCCCSSCSSCE--------------------------
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-----EEeEccccCCCCCCe--------------------------
Confidence            4567889999999998444344589999988853     244455555555555                          


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCC--Cce
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPR--QPV  162 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~--~~~  162 (194)
                                     |||+|.|.+..    ...|.|+|||++.++++++||++.|++..+..+         .++  ...
T Consensus        83 ---------------Wne~f~f~v~~----~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~---------~~~~~~~~  134 (173)
T 2nq3_A           83 ---------------WKQPLTVIVTP----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKS---------NNMKLEEV  134 (173)
T ss_dssp             ---------------EEEEEEEEECT----TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHH---------TTTEESSE
T ss_pred             ---------------ECCEEEEEeCC----CCEEEEEEEECCCCCCCceEEEEEEEHHHhccc---------CCCCccee
Confidence                           55545554421    248999999999999999999999999743211         111  234


Q ss_pred             EeEEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         163 TQWYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       163 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      ..|++|.....   .....|++.++|++|+.
T Consensus       135 ~~~~~L~~~~~---~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          135 VVTLQLGGDKE---PTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEESSC---TTSEEEEEEEEEESEEC
T ss_pred             EEEEECccCCC---CCcccEEEEEEEeeeec
Confidence            78999988632   22345778888888753

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.66  E-value=1.8e-16  Score=134.92  Aligned_cols=114  Identities=19%  Similarity=0.278  Sum_probs=83.2

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      +...+++.+++|++|+++|..|.+||||++.+++.     +.+|+++++|+||.|||+|.                    
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~-----~~~T~~~~~t~nP~w~e~f~--------------------  439 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQ-----SYTTRTIQDTLNPKWNFNCQ--------------------  439 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTE-----EEECCCCSSCSSCEEEEEEE--------------------
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCe-----eccCCccCCCCCCccCceEE--------------------
Confidence            44578999999999999999999999999998543     45555555555555555554                    


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                                           |.+...  ....|.|+|||+|.++++++||++.+++..+..+..+        ..+...
T Consensus       440 ---------------------f~~~~~--~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~--------~~~~~~  488 (510)
T 3jzy_A          440 ---------------------FFIKDL--YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES--------KGPMTR  488 (510)
T ss_dssp             ---------------------EEESCT--TTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHH--------HCSCCE
T ss_pred             ---------------------EEecCC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCC--------CCceee
Confidence                                 444222  2247999999999999999999999999865433222        235789


Q ss_pred             EEEccCCCCC
Q psy6105         165 WYPLMETVPG  174 (194)
Q Consensus       165 W~~L~~~~~~  174 (194)
                      |++|.+...|
T Consensus       489 ~~~l~~~~~G  498 (510)
T 3jzy_A          489 RLLLHEVPTG  498 (510)
T ss_dssp             EEECBSSSSC
T ss_pred             eecCCCCCCc
Confidence            9999876443

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.63  E-value=1.4e-15  Score=129.87  Aligned_cols=90  Identities=22%  Similarity=0.296  Sum_probs=68.8

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      +...|++.++.|++|++ |..|.+||||+|+++..     +.+|+++++++||+|||.|.|.                  
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~-----~~kTkvik~tlNP~Wne~f~f~------------------  447 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQ-----EFRTGVVWNNNNPRWTDKMDFE------------------  447 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTE-----EEECCCBCSCSSCBCCCCEEEE------------------
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCE-----eeeeeeecCCCCCCCCeEEEEE------------------
Confidence            35579999999999998 99999999999998632     3666666666666666665543                  


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCC
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSS  142 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~  142 (194)
                                             +.... ....|.|+|||+|.+++|++||++.++|.
T Consensus       448 -----------------------~~~~~-~~~~L~~~V~D~D~~~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          448 -----------------------NVLLS-TGGPLRVQVWDADYGWDDDLLGSCDRSPH  481 (540)
T ss_dssp             -----------------------EEETT-TCCCEEEEEEECCSSSCCEEEEEEEECCC
T ss_pred             -----------------------EecCC-CCCEEEEEEEECCCCCCCCEEEEEEEEee
Confidence                                   21101 12479999999999999999999999997

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.60  E-value=3.9e-15  Score=105.03  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=58.7

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      ...+.+.+..|+++.+   .|.+||||+|. ...      .+|++++                                 
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~~~------~kt~~~~---------------------------------   40 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK-VQN------VKSTTIA---------------------------------   40 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEE-ETT------EEEECCC---------------------------------
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEE-ecC------EEEeEec---------------------------------
Confidence            3567889999998752   67889999988 221      2222222                                 


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG  145 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~  145 (194)
                             .++.||+|||+|.|.+...   +..|.|+|||+| +++|++||++.|+|..+.
T Consensus        41 -------~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~   89 (131)
T 2cjt_A           41 -------VRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIR   89 (131)
T ss_dssp             -------EESSSCEEEEEEEEEECCC---SSEEEEEEEECC-SSCEEEEEEEEEEGGGSC
T ss_pred             -------CCCCCceECCEEEEEEeCC---CCeEEEEEEECC-CCCCCeEEEEEEEHHHhh
Confidence                   1244555555555555422   237999999999 889999999999998763

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.60  E-value=4.5e-15  Score=117.41  Aligned_cols=108  Identities=27%  Similarity=0.501  Sum_probs=85.2

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      +||||++.+.+...  .+++|+++++++||+|||+|.|.+..+++....|.|+|||++.++++++||++.+++..+.   
T Consensus        40 ~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~---  114 (284)
T 2r83_A           40 SDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD---  114 (284)
T ss_dssp             CCEEEEEEEETCTT--SCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCC---
T ss_pred             CCeEEEEEEEcCCC--ceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcc---
Confidence            79999999975432  3678999999999999999999987766666799999999999999999999999998764   


Q ss_pred             hhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         149 DHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       149 ~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                               .+....+|++|.+...+..  ...|.+.+++.+.|
T Consensus       115 ---------~~~~~~~w~~L~~~~~~~~--~~~G~i~l~l~~~p  147 (284)
T 2r83_A          115 ---------FGHVTEEWRDLQSAEKEEQ--EKLGDICFSLRYVP  147 (284)
T ss_dssp             ---------CSSCEEEEEECBCCSSCCC--CCCCEEEEEEEEET
T ss_pred             ---------cCCcceeEEEeeccccccc--cccccEEEEEEecC
Confidence                     2567789999987653321  23345555566554

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.59  E-value=2.8e-15  Score=105.66  Aligned_cols=121  Identities=14%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      -++|++.+.+|.+|+     |.+|||+++.+-..                                              
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~----------------------------------------------   48 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTFRGQ----------------------------------------------   48 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEETTE----------------------------------------------
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEEecc----------------------------------------------
Confidence            478888888888887     57788888777322                                              


Q ss_pred             Eeeceeec-CCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKK-NSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~-~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|++++ ++.||+|||.|.|++......+..|.+.|+|++.++++.+||++.++|..          +...+  .+..
T Consensus        49 k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~----------lv~~~--~l~l  116 (144)
T 3l9b_A           49 SFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQK----------VVEEN--RVEV  116 (144)
T ss_dssp             EEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHH----------HHHHS--EEEE
T ss_pred             ceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHH----------hccCC--eEEE
Confidence            55555555 45666666666666655545567999999999999999999999999973          34333  4456


Q ss_pred             EEEccCCCCCCccccCCCCcceeeeecCC
Q psy6105         165 WYPLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       165 W~~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      +-+|.+..  .+++.  ..+...|+|.|+
T Consensus       117 ~~~LvD~n--~~~~~--a~I~l~l~Y~pp  141 (144)
T 3l9b_A          117 SDTLIDDN--NAIIK--TSLSMEVRYQAA  141 (144)
T ss_dssp             EEEEECTT--SCEEE--EEEEEEEEEEET
T ss_pred             eecccCCC--CCccc--cEEEEEEEecCC
Confidence            78887744  44443  455556777765

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.57  E-value=9.4e-15  Score=127.08  Aligned_cols=110  Identities=19%  Similarity=0.277  Sum_probs=84.7

Q ss_pred             CceeEEEeeccCCCCCCCCC--CCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCe
Q psy6105           5 GSRSFRADNYCRPTIGNRSI--PSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGK   82 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~--~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~   82 (194)
                      ....|+++++.|++|+.+|.  .|.+||||+|.+.+.....                                       
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~---------------------------------------  535 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDT---------------------------------------  535 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGC---------------------------------------
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCc---------------------------------------
Confidence            45678999999999999884  7889999999987531111                                       


Q ss_pred             EeEEeeceeecCC-CCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105          83 RIRKKRTSVKKNS-LNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP  161 (194)
Q Consensus        83 ~~~~~kT~~~~~t-~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~  161 (194)
                        .+++|++++++ +||+|||+|.|.+..+++  ..|.|+|||+|.++++++||++.|++..+..               
T Consensus       536 --~~~kTkvi~~ng~NP~WnE~f~F~v~~~el--~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~---------------  596 (624)
T 1djx_A          536 --GSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ---------------  596 (624)
T ss_dssp             --EEEECCCCTTCSSSCEEEEEEEEEESCGGG--CEEEEEEEECCSSSCCEEEEEEEEEGGGBCC---------------
T ss_pred             --ceeecccccCCCCCCccCceEEEEEecCCC--CEEEEEEEEcCCCCCCceeEEEEEEHHHcCC---------------
Confidence              25577777765 778888877787765554  4899999999999999999999999987642               


Q ss_pred             eEeEEEccCCC
Q psy6105         162 VTQWYPLMETV  172 (194)
Q Consensus       162 ~~~W~~L~~~~  172 (194)
                      -.+|++|.+..
T Consensus       597 G~r~v~L~d~~  607 (624)
T 1djx_A          597 GYRHVHLLSKN  607 (624)
T ss_dssp             EEEEEEEECTT
T ss_pred             CcEEEeCCCCC
Confidence            13699998754

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.55  E-value=5.2e-15  Score=130.23  Aligned_cols=109  Identities=20%  Similarity=0.309  Sum_probs=82.5

Q ss_pred             CceeEEEeeccCCCCCC---CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCC
Q psy6105           5 GSRSFRADNYCRPTIGN---RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG   81 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~---~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~   81 (194)
                      ....+++.+++|++|++   +|..|.+||||+|++.+..  ..                                     
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~--~~-------------------------------------   56 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DS-------------------------------------   56 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST--TC-------------------------------------
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC--CC-------------------------------------
Confidence            35679999999999999   8999999999999997641  12                                     


Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP  161 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~  161 (194)
                          +++|+++++++||+|||+|.|.+....  ...|.|+|||+|.++ +++||++.|++..+..            +..
T Consensus        57 ----k~kTkvik~tlNPvWNEtF~F~v~~~~--~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~------------g~~  117 (749)
T 1cjy_A           57 ----RKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSMKV------------GEK  117 (749)
T ss_dssp             ----CEECCCCTTCSSCEEEEEEEEEECTTS--CCBCEEEEEECCSSS-CEEEEEECCBSTTSCT------------TCC
T ss_pred             ----eEecceEcCCCCCeeeeEEEEEecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHcCC------------CCc
Confidence                345555555555555555556554322  247999999999998 9999999999987642            555


Q ss_pred             eEeEEEccCC
Q psy6105         162 VTQWYPLMET  171 (194)
Q Consensus       162 ~~~W~~L~~~  171 (194)
                      ..+|++|.+.
T Consensus       118 ~~~w~~L~~~  127 (749)
T 1cjy_A          118 KEVPFIFNQV  127 (749)
T ss_dssp             CCEEEEETTT
T ss_pred             eEEEEecCCC
Confidence            6789999875

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.55  E-value=6e-15  Score=129.69  Aligned_cols=114  Identities=25%  Similarity=0.419  Sum_probs=85.7

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+.+.++.|++|.++|.+|.+||||++.+.++++...                                         +
T Consensus       172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~-----------------------------------------k  210 (674)
T 3pfq_A          172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES-----------------------------------------K  210 (674)
T ss_dssp             SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCS-----------------------------------------C
T ss_pred             ceeeeeeecccccCCCCcccccCcccccccccCccccc-----------------------------------------c
Confidence            45778889999999999999999999999887632222                                         4


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      ++|+++++++||+|||+|.|.+...+.. ..|.|+|||+|.++++++||++.+++.++          .   .....+|+
T Consensus       211 ~kT~v~~~tlnP~wne~f~f~~~~~~~~-~~L~v~v~d~d~~~~dd~iG~~~i~l~~l----------~---~~~~~~w~  276 (674)
T 3pfq_A          211 QKTKTIKSSLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISEL----------Q---KAGVDGWF  276 (674)
T ss_dssp             EECCCCSSCSSCEEEEEEEEECCSTTTT-CEEEEEEEECCSSSCCEECCBCCCBTTHH----------H---HCCEEEEE
T ss_pred             ccccccccccCCCccceeeeecccCCcc-ceeeeEEeecccccccccccccccchhhh----------c---cCCcccce
Confidence            4566666666666666666666544433 47999999999999999999999999843          3   23458999


Q ss_pred             EccCCCCCC
Q psy6105         167 PLMETVPGQ  175 (194)
Q Consensus       167 ~L~~~~~~~  175 (194)
                      .|.+...+.
T Consensus       277 ~Lls~~~g~  285 (674)
T 3pfq_A          277 KLLSQEEGE  285 (674)
T ss_dssp             ECBCTTGGG
T ss_pred             eecccccce
Confidence            998876544

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.52  E-value=3.1e-14  Score=104.46  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++++..|+++.   ..|.+||||+|. ...      .+|++++                                  
T Consensus        14 ~~L~V~V~~A~~l~---~~g~~DPYV~v~-~~~------~kt~~~~----------------------------------   49 (167)
T 2cjs_A           14 SLLCVGVKKAKFDG---AQEKFNTYVTLK-VQN------VESTTIA----------------------------------   49 (167)
T ss_dssp             CEEEEEEEEEECSS---CGGGCEEEEEEE-ETT------EEEECCC----------------------------------
T ss_pred             EEEEEEEEEEECCC---CCCCCCeEEEEE-ecc------eEEEEec----------------------------------
Confidence            46788888888774   267788888887 211      2333322                                  


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG  145 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~  145 (194)
                            .++.||+|||+|.|.+...   ...|.|+|||+| +++|++||++.|+|..+.
T Consensus        50 ------~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~   98 (167)
T 2cjs_A           50 ------VRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIR   98 (167)
T ss_dssp             ------EESSSCEEEEEEEEECCCT---TSEEEEEEEECC-SSCCEEEEEEEEEGGGSC
T ss_pred             ------CCCCCCCCCCEEEEEeeCC---CCEEEEEEEECC-CCCCceEEEEEEEHHHhc
Confidence                  1244555555555555421   237999999999 889999999999998764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.51  E-value=2.2e-14  Score=114.30  Aligned_cols=108  Identities=29%  Similarity=0.521  Sum_probs=81.3

Q ss_pred             CCceeEEEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeC-CCCCCcc
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIG-SSFIGIG  147 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~-l~~~~~~  147 (194)
                      +||||++.+.+++.  .+++|+++++++||+|||+|.|.+..+++....|.|+|||+|.++++++||++.++ +...   
T Consensus        41 ~dPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~---  115 (296)
T 1dqv_A           41 SDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLEL---  115 (296)
T ss_dssp             CCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGG---
T ss_pred             cCeEEEEEEEcCCC--eeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEecccccc---
Confidence            79999999864322  47799999999999999999999977776667899999999999999999999996 3221   


Q ss_pred             hhhHHHHhhCCCCceEeEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         148 RDHWLEMLDNPRQPVTQWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       148 ~~~W~~~l~~p~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                             . ........|+.|.+...+.   ...|.+.+++.+++
T Consensus       116 -------~-~~~~~~~~w~~L~~~~~~~---~~~G~i~vsl~y~~  149 (296)
T 1dqv_A          116 -------A-EQPPDRPLWRDILEGGSEK---ADLGELNFSLCYLP  149 (296)
T ss_dssp             -------G-SSCSSCCCCEECBCCSSCC---SCCCEEEEEEEEET
T ss_pred             -------c-cCCccceeeeccccccccc---cccceEEEEEEecc
Confidence                   1 1133456899998754322   24466666676655

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.42  E-value=1.6e-14  Score=122.33  Aligned_cols=104  Identities=17%  Similarity=0.222  Sum_probs=11.6

Q ss_pred             CCceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCC---CCceeeeeEEEecCCCceeEEEEEcC
Q psy6105           4 KGSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNS---LNPFYNEALLFDVPANPYVKVYLVCE   80 (194)
Q Consensus         4 ~~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t---~nP~w~e~f~f~~~~dpyv~v~l~~~   80 (194)
                      +....+++.++.|++|+++|     ||||++++.+.    ...+|+++++|   +||+|||+                  
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~----~~~kT~v~~kt~~glnP~WnE~------------------   60 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDM----LYARTTSKPRSASGDTVFWGEH------------------   60 (483)
T ss_dssp             EEEECC------------------------------------------------------CC------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCe----EEeeeeEEeCCCCCCCCccccE------------------
Confidence            34567889999999999987     89999988643    13455555555   55555555                  


Q ss_pred             CeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEec-C---CCCCCceeEEEEeCCCCCCcchhhHHHHhh
Q psy6105          81 GKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDY-D---RIGSDELMGCTAIGSSFIGIGRDHWLEMLD  156 (194)
Q Consensus        81 ~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~-~---~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~  156 (194)
                                             |.|.+... .  ..|.|+|||. +   ..+++++||++.|++..+.           
T Consensus        61 -----------------------F~f~~~~~-~--~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~-----------  103 (483)
T 3bxj_A           61 -----------------------FEFNNLPA-V--RALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLA-----------  103 (483)
T ss_dssp             -----------------------EECC-----------------------------------------------------
T ss_pred             -----------------------EEEecCCC-c--cEEEEEEEecCCccccCCCCceEEEEEEEHHHhc-----------
Confidence                                   44443211 1  3688899983 4   3678999999999998663           


Q ss_pred             CCCCceEeEEEccCCC
Q psy6105         157 NPRQPVTQWYPLMETV  172 (194)
Q Consensus       157 ~p~~~~~~W~~L~~~~  172 (194)
                       ++....+||+|.+..
T Consensus       104 -~~~~~~~W~~L~~~~  118 (483)
T 3bxj_A          104 -GRHFTEQWYPVTLPT  118 (483)
T ss_dssp             ----CCEECC------
T ss_pred             -CCCCCCeEEECCCCC
Confidence             255678999997654

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.19  E-value=8.8e-11  Score=104.46  Aligned_cols=58  Identities=22%  Similarity=0.436  Sum_probs=46.9

Q ss_pred             EEeeceeecC-CCCCcccce-EEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          85 RKKRTSVKKN-SLNPFYNEA-LLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        85 ~~~kT~~~~~-t~nP~~~e~-f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .+++|+++++ ++||+|||+ |.|. +..+++  ..|.++|||++    +++||++.|+|+.+..|+
T Consensus       685 ~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V~D~d----ddfiG~~~ipL~~L~~Gy  745 (816)
T 3qr0_A          685 KKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIVSEEN----GKFIGHRVMPLDGIKPGY  745 (816)
T ss_dssp             EEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEEEETT----SCEEEEEEEESTTCCCEE
T ss_pred             ceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEEEecC----CCeeeEEEEEHHHcCCcc
Confidence            3678888775 599999997 9998 766555  48999999974    789999999999886543

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.18  E-value=5e-11  Score=106.62  Aligned_cols=74  Identities=27%  Similarity=0.340  Sum_probs=53.3

Q ss_pred             CCceeEEEEEcCCe-EeEEeeceeecC-CCCCcccc-eEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCC
Q psy6105          69 ANPYVKVYLVCEGK-RIRKKRTSVKKN-SLNPFYNE-ALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFI  144 (194)
Q Consensus        69 ~dpyv~v~l~~~~~-~~~~~kT~~~~~-t~nP~~~e-~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~  144 (194)
                      +||||+|.+.+.+. ...+++|+++++ ++||+||| +|.|. +..+++  ..|.++|||++    +++||++.|+|..+
T Consensus       742 ~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~D~d----ddfiG~~~lpL~~L  815 (885)
T 3ohm_B          742 VGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAFEEG----GKFVGHRILPVSAI  815 (885)
T ss_dssp             CCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEEETT----TEEEEEEEEETTTC
T ss_pred             CCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEEcCC----ccEEeeEEEEHHHc
Confidence            45555555543111 112468888875 59999998 69998 655554  48999999986    79999999999988


Q ss_pred             Ccch
Q psy6105         145 GIGR  148 (194)
Q Consensus       145 ~~~~  148 (194)
                      ..|+
T Consensus       816 ~~Gy  819 (885)
T 3ohm_B          816 RSGY  819 (885)
T ss_dssp             CCEE
T ss_pred             CCCc
Confidence            5543

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.10  E-value=1.5e-10  Score=103.18  Aligned_cols=83  Identities=24%  Similarity=0.368  Sum_probs=57.7

Q ss_pred             CCceeEEEEEcCCe-EeEEeece-eec-CCCCCcccc-eEEE-EecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCC
Q psy6105          69 ANPYVKVYLVCEGK-RIRKKRTS-VKK-NSLNPFYNE-ALLF-DVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSF  143 (194)
Q Consensus        69 ~dpyv~v~l~~~~~-~~~~~kT~-~~~-~t~nP~~~e-~f~f-~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~  143 (194)
                      +||||+|.+.+.+. ...+++|+ +++ +++||+||| +|.| .+..+++  ..|.|.|||++    +++||++.|++..
T Consensus       695 ~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el--~~Lr~~V~D~d----~d~iG~~~ipl~~  768 (799)
T 2zkm_X          695 VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVMEEG----NKFLGHRIIPINA  768 (799)
T ss_dssp             CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEEETT----TEEEEEEEEEGGG
T ss_pred             CCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc--cEEEEEEEEeC----CCccceEeeehhh
Confidence            34555555543111 11256788 676 468999999 6999 7866665  38999999986    7999999999987


Q ss_pred             CCcchhhHHHHhhCCCCceEeEEEccCCC
Q psy6105         144 IGIGRDHWLEMLDNPRQPVTQWYPLMETV  172 (194)
Q Consensus       144 ~~~~~~~W~~~l~~p~~~~~~W~~L~~~~  172 (194)
                      +..|               -+|.+|.+..
T Consensus       769 L~~G---------------~r~v~L~~~~  782 (799)
T 2zkm_X          769 LNSG---------------YHHLCLHSES  782 (799)
T ss_dssp             BCCE---------------EEEEEEECTT
T ss_pred             cCCC---------------cEEEeccCCC
Confidence            7432               4578887654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.46  E-value=1.5e-06  Score=59.49  Aligned_cols=83  Identities=14%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             CCceeEEEEEcCCeEeEEeec-eeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRT-SVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT-~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      .|||+.|.+... ......+| ..+++|..|+|||+|.-.+..    .+.|.|.|++...    ++++.+.|++.     
T Consensus        27 lDPy~aV~vdE~-~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a~----~fvAn~tV~~e-----   92 (126)
T 1yrk_A           27 NQPFCAVKMKEA-LSTERGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAAE----EPVSEVTVGVS-----   92 (126)
T ss_dssp             CCCEEEEEEEEE-EEETTEEEEECCSCCBCCCTTCEEEEECCT----TCEEEEEEEEETT----EEEEEEEEEHH-----
T ss_pred             CCceEEEEeeee-EEcccceeecccCCCCCcCccceEEeeeeC----CEEEEEEEEcCCC----CeeeEEEEEHH-----
Confidence            689998887422 11112344 666789999999999888764    3589999996443    89999999997     


Q ss_pred             hhhHHHHhhC---CCCceEeEEEccC
Q psy6105         148 RDHWLEMLDN---PRQPVTQWYPLME  170 (194)
Q Consensus       148 ~~~W~~~l~~---p~~~~~~W~~L~~  170 (194)
                           +++.+   .+...+-|..|+|
T Consensus        93 -----dL~~~c~~~~g~~e~WvdLeP  113 (126)
T 1yrk_A           93 -----VLAERCKKNNGKAEFWLDLQP  113 (126)
T ss_dssp             -----HHHHHHHTTTTEEEEEEECBS
T ss_pred             -----HHHhhhccCCCceEEEEeccc
Confidence                 34433   4667789999988

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.43  E-value=1e-06  Score=61.19  Aligned_cols=84  Identities=15%  Similarity=0.209  Sum_probs=60.6

Q ss_pred             CCceeEEEEEcCCeEeEEeec-eeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcc
Q psy6105          69 ANPYVKVYLVCEGKRIRKKRT-SVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIG  147 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~~~kT-~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~  147 (194)
                      .|||+.|.+-.. ......+| ..+++|..|+|||+|.-.+..    .+.|.|.|++...    ++|+.+.|++.     
T Consensus        32 lDPY~aV~VdE~-~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a~----~fVAn~tV~~e-----   97 (138)
T 2enj_A           32 VNPYCAVLVKEY-VESENGQMYIQKKPTMYPPWDSTFDAHINK----GRVMQIIVKGKNV----DLISETTVELY-----   97 (138)
T ss_dssp             CCCEEEEEEEEE-EEETTEEEEEEEEEEECCCSSSEEEECCCS----SCEEEEEEECSSC----SCCEEEEEESH-----
T ss_pred             CCceEEEEeeee-eeccCceeecccCCCCCccccceEeeeEEC----CeEEEEEEEcCCC----CeeeEEEEEHH-----
Confidence            689998887422 11112555 556678999999998877654    3589999995332    89999999997     


Q ss_pred             hhhHHHHhhC---CCCceEeEEEccCC
Q psy6105         148 RDHWLEMLDN---PRQPVTQWYPLMET  171 (194)
Q Consensus       148 ~~~W~~~l~~---p~~~~~~W~~L~~~  171 (194)
                           +++.+   .+...+-|..|+|.
T Consensus        98 -----dL~~~ck~~~g~~e~WvdLeP~  119 (138)
T 2enj_A           98 -----SLAERCRKNNGKTEIWLELKPQ  119 (138)
T ss_dssp             -----HHHHHHHHTTTCEEEEEECBSS
T ss_pred             -----HHHhhhccCCCceEEEEecccC
Confidence                 44433   45677899999883

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=97.56  E-value=0.00027  Score=48.35  Aligned_cols=68  Identities=12%  Similarity=0.123  Sum_probs=43.4

Q ss_pred             EEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEee-EEecCCCCceeeeeEEEecCCCceeEEEE
Q psy6105           9 FRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRT-SVKKNSLNPFYNEALLFDVPANPYVKVYL   77 (194)
Q Consensus         9 ~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T-~~~~~t~nP~w~e~f~f~~~~dpyv~v~l   77 (194)
                      +|+.-..+..-.-+...-..||||.|.+...- .....+| .++++|..|+||++|.-.+...-.+.+.+
T Consensus         8 lRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~-~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~Gr~l~i~V   76 (126)
T 1yrk_A            8 LRIAFNSYELGSLQAEDEANQPFCAVKMKEAL-STERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVL   76 (126)
T ss_dssp             EEEEEEEEECSSCCCSSSSCCCEEEEEEEEEE-EETTEEEEECCSCCBCCCTTCEEEEECCTTCEEEEEE
T ss_pred             EEeeeccccccccCCccccCCceEEEEeeeeE-EcccceeecccCCCCCcCccceEEeeeeCCEEEEEEE
Confidence            45554444332222334578999999987430 1113466 88899999999999998877444444444

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=97.49  E-value=4.6e-05  Score=54.60  Aligned_cols=18  Identities=17%  Similarity=0.207  Sum_probs=15.9

Q ss_pred             ecCCCCceeeeeEEEecC
Q psy6105          51 KKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        51 ~~~t~nP~w~e~f~f~~~   68 (194)
                      +++|+||+|||+|.|.+.
T Consensus        88 ~~~tlnP~wnE~F~f~v~  105 (155)
T 2z0u_A           88 LDASDTLVFNEVFWVSMS  105 (155)
T ss_dssp             EECCSSEEEEEEEEEECC
T ss_pred             CCCCCCCccccEEEEEcC
Confidence            457899999999999987

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=97.46  E-value=0.0011  Score=45.94  Aligned_cols=69  Identities=12%  Similarity=0.095  Sum_probs=45.7

Q ss_pred             eEEEeeccCCCCCCCC-CCCCCCcEEEEEEEcCCeEeEEEee-EEecCCCCceeeeeEEEecCCCceeEEEE
Q psy6105           8 SFRADNYCRPTIGNRS-IPSVADPYVKVYLVCEGKRIRKKRT-SVKKNSLNPFYNEALLFDVPANPYVKVYL   77 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d-~~g~~dpyv~v~l~~~~~~~~~~~T-~~~~~t~nP~w~e~f~f~~~~dpyv~v~l   77 (194)
                      -+|+.-..+...+-+. ..-..||||.|.+... ......+| .++++|..|+|||+|.-.+...-.+.+.+
T Consensus        11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~-~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~Gr~l~i~V   81 (138)
T 2enj_A           11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEY-VESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIV   81 (138)
T ss_dssp             CEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEE-EEETTEEEEEEEEEEECCCSSSEEEECCCSSCEEEEEE
T ss_pred             ceEEEeeccccCCCCCcccccCCceEEEEeeee-eeccCceeecccCCCCCccccceEeeeEECCeEEEEEE
Confidence            3566655555544443 2346899999998742 01124788 88899999999999998877444444443

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=97.25  E-value=0.00038  Score=49.29  Aligned_cols=32  Identities=34%  Similarity=0.555  Sum_probs=24.3

Q ss_pred             eEEecCCCCceeeeeEEEecCCC----ceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPAN----PYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~~   79 (194)
                      |+++++|+||+|||+|.|.+..+    ..+.+.+.+
T Consensus        71 T~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           71 THVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             CCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             cCcccCCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            57888999999999999998743    345555543

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=97.17  E-value=0.00015  Score=50.45  Aligned_cols=32  Identities=19%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             eEEecCCCCceeeeeEEEe-cC----CCceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFD-VP----ANPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~-~~----~dpyv~v~l~~   79 (194)
                      |+++++|+||+|||+|.|. +.    .+..+.+.+.+
T Consensus        60 T~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           60 TKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             CCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             CCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            6788899999999999998 76    23456666543

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=97.17  E-value=0.0015  Score=44.43  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=24.7

Q ss_pred             eEEecCCCCceeeeeEEEecC--CCceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP--ANPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~--~dpyv~v~l~~   79 (194)
                      |+++++|+||+|||+|.|.+.  ....+.+.+.+
T Consensus        45 T~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d   78 (126)
T 1rlw_A           45 TRHFNNDINPVWNETFEFILDPNQENVLEITLMD   78 (126)
T ss_dssp             CCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEE
T ss_pred             ccccCCCCCCcccceEEEEecCCCCCEEEEEEEE
Confidence            678889999999999999985  33455665553

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=97.16  E-value=0.00054  Score=48.42  Aligned_cols=35  Identities=31%  Similarity=0.376  Sum_probs=27.8

Q ss_pred             EEeeEEecCCCCceeeeeEEEecC-CCceeEEEEEc
Q psy6105          45 KKRTSVKKNSLNPFYNEALLFDVP-ANPYVKVYLVC   79 (194)
Q Consensus        45 ~~~T~~~~~t~nP~w~e~f~f~~~-~dpyv~v~l~~   79 (194)
                      ..+|+++++|+||.|||+|.|.+. .+..+.+.+.+
T Consensus        59 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d   94 (153)
T 3b7y_A           59 SVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFD   94 (153)
T ss_dssp             EEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEE
T ss_pred             eeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEE
Confidence            688999999999999999999876 33455555543

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.09  E-value=0.00019  Score=50.17  Aligned_cols=27  Identities=26%  Similarity=0.498  Sum_probs=19.7

Q ss_pred             cCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          52 KNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        52 ~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      ++|+||+|||+|.|.+..    +..+.+.+.
T Consensus        68 ~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~   98 (142)
T 2dmg_A           68 KKTLNPVFDQSFDFSVSLPEVQRRTLDVAVK   98 (142)
T ss_dssp             CSCSSCEEEEEEEECCCHHHHHHCEEEEEEE
T ss_pred             CCCCCCCcCceEEEEecHHHhCcCEEEEEEE
Confidence            478999999999999762    234555554

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=97.08  E-value=0.00025  Score=51.42  Aligned_cols=11  Identities=18%  Similarity=0.250  Sum_probs=6.3

Q ss_pred             eEEEeeccCCC
Q psy6105           8 SFRADNYCRPT   18 (194)
Q Consensus         8 ~~r~~~~~a~~   18 (194)
                      .++|++|.+.+
T Consensus        36 v~~a~~L~~~d   46 (171)
T 2q3x_A           36 VIRARSLTQKP   46 (171)
T ss_dssp             EEEEESCCCCC
T ss_pred             EEEeeCCCCCC
Confidence            35566666654

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=97.08  E-value=0.00035  Score=48.38  Aligned_cols=32  Identities=34%  Similarity=0.671  Sum_probs=24.1

Q ss_pred             eEEecCCCCceeeeeEEEecCCC----ceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPAN----PYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~d----pyv~v~l~~   79 (194)
                      |+++++|+||.|||+|.|.+..+    ..+.+.+.+
T Consensus        57 T~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           57 TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             CCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            57888999999999999998733    245555543

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=97.07  E-value=0.0005  Score=50.05  Aligned_cols=13  Identities=23%  Similarity=0.084  Sum_probs=7.8

Q ss_pred             CceeEEEEeCCCC
Q psy6105         131 DELMGCTAIGSSF  143 (194)
Q Consensus       131 ~~~iG~~~i~l~~  143 (194)
                      ....|.+.+.+..
T Consensus       147 ~~~~G~L~v~l~~  159 (173)
T 2nq3_A          147 TETIGDLSICLDG  159 (173)
T ss_dssp             TSEEEEEEEEEES
T ss_pred             CcccEEEEEEEee
Confidence            3456777666653

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=97.03  E-value=0.00018  Score=50.21  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=26.0

Q ss_pred             EeeEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105          46 KRTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        46 ~~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      .+|+++++|+||+|||+|.|.+..    +..+.+.+.+
T Consensus        61 ~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T 1wfm_A           61 AQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             EECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             EecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEE
Confidence            468999999999999999999763    2345555543

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=97.02  E-value=0.00041  Score=49.48  Aligned_cols=32  Identities=47%  Similarity=0.779  Sum_probs=23.7

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      |+++++|+||.|||+|.|.+..    +..+.+.+.+
T Consensus        66 T~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           66 TTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            5678899999999999999862    2345555543

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=96.99  E-value=0.00035  Score=49.21  Aligned_cols=22  Identities=41%  Similarity=1.016  Sum_probs=19.7

Q ss_pred             eEEecCCCCceeeeeEEEecCC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA   69 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~   69 (194)
                      |+++++|+||.|||+|.|.+..
T Consensus        65 T~v~~~t~nP~wne~f~f~v~~   86 (148)
T 3fdw_A           65 TSIKRDTVNPLYDETLRYEIPE   86 (148)
T ss_dssp             CCCCSSCSSCEEEEEEEEECCS
T ss_pred             cccCCCCCCCcEeeEEEEEeCh
Confidence            6788999999999999999874

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=96.96  E-value=0.00034  Score=50.27  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=24.2

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      |+++++|+||+|||+|.|.+..    +..+.+.+.+
T Consensus        78 T~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           78 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            5677899999999999999863    3355565543

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.93  E-value=0.00087  Score=46.55  Aligned_cols=9  Identities=0%  Similarity=-0.293  Sum_probs=5.0

Q ss_pred             eeEEEEeCC
Q psy6105         133 LMGCTAIGS  141 (194)
Q Consensus       133 ~iG~~~i~l  141 (194)
                      .-|.+.+.+
T Consensus       121 ~~G~l~l~~  129 (140)
T 2dmh_A          121 TGATIDLVI  129 (140)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            446666554

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=96.91  E-value=0.00039  Score=47.63  Aligned_cols=10  Identities=10%  Similarity=0.062  Sum_probs=4.9

Q ss_pred             EEEeeccCCC
Q psy6105           9 FRADNYCRPT   18 (194)
Q Consensus         9 ~r~~~~~a~~   18 (194)
                      ++|++|.+.+
T Consensus        25 ~~a~~L~~~d   34 (129)
T 2bwq_A           25 LGAKDLPSRE   34 (129)
T ss_dssp             EEEESCCCCT
T ss_pred             EEeeCCCCCC
Confidence            4455555444

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.90  E-value=0.00022  Score=50.18  Aligned_cols=32  Identities=25%  Similarity=0.483  Sum_probs=23.7

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      |+++++|+||+|||+|.|.+..    +..+.+.+.+
T Consensus        72 T~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d  107 (147)
T 2enp_A           72 TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVD  107 (147)
T ss_dssp             CCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEEC
T ss_pred             eecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEE
Confidence            5678899999999999999762    2345555543

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=96.90  E-value=0.00033  Score=48.96  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=17.4

Q ss_pred             CceeeeeEEEecCC----CceeEEEEEc
Q psy6105          56 NPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus        56 nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      ||.|||+|.|.+..    +..+.+.+.+
T Consensus        81 nP~wne~f~f~v~~~~l~~~~L~i~V~d  108 (143)
T 3f04_A           81 NPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             SCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             CCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence            79999999998762    2455565543

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=96.90  E-value=0.00035  Score=49.46  Aligned_cols=10  Identities=10%  Similarity=-0.014  Sum_probs=4.6

Q ss_pred             EEEeeccCCC
Q psy6105           9 FRADNYCRPT   18 (194)
Q Consensus         9 ~r~~~~~a~~   18 (194)
                      ++|++|.+.+
T Consensus        49 ~~a~~L~~~d   58 (152)
T 1rsy_A           49 IQAAELPALD   58 (152)
T ss_dssp             EEEESCCCCS
T ss_pred             EEeECCCCcc
Confidence            4445554443

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=96.89  E-value=0.00073  Score=46.53  Aligned_cols=11  Identities=18%  Similarity=0.307  Sum_probs=5.6

Q ss_pred             EEEeeccCCCC
Q psy6105           9 FRADNYCRPTI   19 (194)
Q Consensus         9 ~r~~~~~a~~l   19 (194)
                      ++|++|.+.+.
T Consensus        12 ~~a~~L~~~d~   22 (132)
T 3pyc_A           12 LCAKNLAKKDF   22 (132)
T ss_dssp             EEEESCCCCST
T ss_pred             EEeECCCCCCC
Confidence            45555555443

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=96.88  E-value=0.00041  Score=48.92  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=23.9

Q ss_pred             eEEecCCCCceeeeeEEEecCC---CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA---NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~---dpyv~v~l~~   79 (194)
                      |+++++|+||.|||+|.|.+..   +..+.+.+.+
T Consensus        72 T~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d  106 (149)
T 1a25_A           72 TKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD  106 (149)
T ss_dssp             CCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred             cceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEE
Confidence            6788899999999999999863   2345555543

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=96.83  E-value=0.00073  Score=49.04  Aligned_cols=32  Identities=34%  Similarity=0.415  Sum_probs=24.7

Q ss_pred             eEEecCCCCceeeeeEEEecCC-CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA-NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~-dpyv~v~l~~   79 (194)
                      |+++++++||.|||.|.|.+.. +..+.+.+.+
T Consensus        50 T~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B           50 TKTIKKSLNPKWNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEE
T ss_pred             CceECCCCCCcccceEEEEEcCCCCEEEEEEEE
Confidence            5788899999999999998863 3356666654

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=96.83  E-value=0.00045  Score=48.97  Aligned_cols=21  Identities=24%  Similarity=0.486  Sum_probs=19.0

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++|+||.|||+|.|.+.
T Consensus        67 T~v~~~t~nP~wne~f~f~v~   87 (153)
T 3fbk_A           67 TQTVPDCRDPAFHEHFFFPVQ   87 (153)
T ss_dssp             CCCCTTCSSCEEEEEEEEECC
T ss_pred             ccccCCCCCCccccEEEEecc
Confidence            678889999999999999984

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.82  E-value=0.00045  Score=48.20  Aligned_cols=27  Identities=30%  Similarity=0.599  Sum_probs=19.2

Q ss_pred             CCCCceeeeeEEEec-C----CCceeEEEEEc
Q psy6105          53 NSLNPFYNEALLFDV-P----ANPYVKVYLVC   79 (194)
Q Consensus        53 ~t~nP~w~e~f~f~~-~----~dpyv~v~l~~   79 (194)
                      +|+||+|||+|.|.+ +    .+..+.+.+.+
T Consensus        70 ~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  101 (141)
T 2d8k_A           70 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLD  101 (141)
T ss_dssp             TCSSCCCCEEEEECSCCHHHHTTSEEEEEEEE
T ss_pred             CCCCCccccEEEECccCHHHcccCEEEEEEEE
Confidence            479999999999985 3    23456666543

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=96.79  E-value=0.00063  Score=47.44  Aligned_cols=27  Identities=22%  Similarity=0.566  Sum_probs=19.4

Q ss_pred             cCCCCceeeeeEEEe-cCC----CceeEEEEE
Q psy6105          52 KNSLNPFYNEALLFD-VPA----NPYVKVYLV   78 (194)
Q Consensus        52 ~~t~nP~w~e~f~f~-~~~----dpyv~v~l~   78 (194)
                      ++|+||.|||+|.|. +..    ...+.+.+.
T Consensus        74 ~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           74 RNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             CSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            468999999999998 542    234555554

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.61  E-value=0.00069  Score=46.73  Aligned_cols=12  Identities=8%  Similarity=0.202  Sum_probs=7.0

Q ss_pred             eEEEeeccCCCC
Q psy6105           8 SFRADNYCRPTI   19 (194)
Q Consensus         8 ~~r~~~~~a~~l   19 (194)
                      .++|++|.+.+.
T Consensus        19 v~~a~~L~~~d~   30 (133)
T 2ep6_A           19 VLKAADLLAADF   30 (133)
T ss_dssp             EEEEESCCCSSS
T ss_pred             EEeeECCCCCCC
Confidence            356666666554

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=96.54  E-value=0.00042  Score=48.15  Aligned_cols=31  Identities=19%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             eEEecCCCCceeeeeEEEec-CC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDV-PA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~-~~----dpyv~v~l~   78 (194)
                      |+++++|+||+|||+|.|.+ ..    +..+.+.+.
T Consensus        62 T~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           62 TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             CCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            67888999999999999984 32    245555554

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=96.43  E-value=0.0012  Score=46.26  Aligned_cols=12  Identities=8%  Similarity=-0.139  Sum_probs=6.1

Q ss_pred             eEEEeeccCCCC
Q psy6105           8 SFRADNYCRPTI   19 (194)
Q Consensus         8 ~~r~~~~~a~~l   19 (194)
                      .++|++|.+.+.
T Consensus        23 v~~a~~L~~~d~   34 (148)
T 3kwu_A           23 VVCAQGLQAKDK   34 (148)
T ss_dssp             EEEEESCCCCST
T ss_pred             EEeeeCCCCCCC
Confidence            345555555443

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=96.41  E-value=0.0011  Score=45.91  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=14.9

Q ss_pred             ceeeeeEEEe-cCC----CceeEEEEE
Q psy6105          57 PFYNEALLFD-VPA----NPYVKVYLV   78 (194)
Q Consensus        57 P~w~e~f~f~-~~~----dpyv~v~l~   78 (194)
                      |+|||+|.|. +..    +..+.+.+.
T Consensus        71 P~wne~f~f~~v~~~~~~~~~l~i~V~   97 (138)
T 1ugk_A           71 PAFDETFTFYGIPYTQIQELALHFTIL   97 (138)
T ss_dssp             CEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred             CcEeeEEEEcCcCHHHhccCEEEEEEE
Confidence            9999999995 652    234555553

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=96.35  E-value=0.0013  Score=45.37  Aligned_cols=12  Identities=8%  Similarity=-0.022  Sum_probs=7.3

Q ss_pred             eEEEeeccCCCC
Q psy6105           8 SFRADNYCRPTI   19 (194)
Q Consensus         8 ~~r~~~~~a~~l   19 (194)
                      .++|++|.+.+.
T Consensus        16 v~~a~~L~~~d~   27 (136)
T 1wfj_A           16 LVSAKGLEDADF   27 (136)
T ss_dssp             EEEEEECSSCCS
T ss_pred             EEeccCCCCccc
Confidence            456666766554

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=95.94  E-value=0.0026  Score=43.97  Aligned_cols=14  Identities=14%  Similarity=0.631  Sum_probs=12.8

Q ss_pred             CCceeeeeEEEecC
Q psy6105          55 LNPFYNEALLFDVP   68 (194)
Q Consensus        55 ~nP~w~e~f~f~~~   68 (194)
                      +||.|||+|.|.+.
T Consensus        44 ~nP~WnE~f~f~v~   57 (131)
T 2cjt_A           44 SQPSWEQDFMFEIN   57 (131)
T ss_dssp             SSCEEEEEEEEEEC
T ss_pred             CCceECCEEEEEEe
Confidence            69999999999876

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=95.82  E-value=0.00072  Score=47.08  Aligned_cols=35  Identities=26%  Similarity=0.475  Sum_probs=27.4

Q ss_pred             EEEeeEEecCCCCceeeeeEEEe-cC----CCceeEEEEE
Q psy6105          44 RKKRTSVKKNSLNPFYNEALLFD-VP----ANPYVKVYLV   78 (194)
Q Consensus        44 ~~~~T~~~~~t~nP~w~e~f~f~-~~----~dpyv~v~l~   78 (194)
                      .+.+|+++++|+||+|||.|.|. +.    .+..+.+.+.
T Consensus        64 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~  103 (142)
T 1rh8_A           64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVW  103 (142)
T ss_dssp             HHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEE
T ss_pred             ceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEE
Confidence            46889999999999999999997 55    2345666654

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=95.52  E-value=0.029  Score=48.84  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=25.2

Q ss_pred             eeEEecCC-CCceeeeeEEEecCCC--ceeEEEEEc
Q psy6105          47 RTSVKKNS-LNPFYNEALLFDVPAN--PYVKVYLVC   79 (194)
Q Consensus        47 ~T~~~~~t-~nP~w~e~f~f~~~~d--pyv~v~l~~   79 (194)
                      +|++++++ +||+|||+|.|.+...  .++++.+.+
T Consensus       539 kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          539 QTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             ECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             ecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57888887 9999999999987632  356666544

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=95.42  E-value=0.0064  Score=43.84  Aligned_cols=25  Identities=12%  Similarity=0.284  Sum_probs=17.8

Q ss_pred             CCceeeeeEEEecC-CCceeEEEEEc
Q psy6105          55 LNPFYNEALLFDVP-ANPYVKVYLVC   79 (194)
Q Consensus        55 ~nP~w~e~f~f~~~-~dpyv~v~l~~   79 (194)
                      +||.|||+|.|.+. .+..+.+.+.+
T Consensus        53 ~nP~WnE~f~f~v~~~~~~L~~~V~D   78 (167)
T 2cjs_A           53 SQPSWEQDFMFEINRLDLGLTVEVWN   78 (167)
T ss_dssp             SSCEEEEEEEEECCCTTSEEEEEEEE
T ss_pred             CCCCCCCEEEEEeeCCCCEEEEEEEE
Confidence            69999999999987 23345555543

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=95.41  E-value=0.012  Score=41.21  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=23.5

Q ss_pred             EeeEEec-CCCCceeeeeEEEecC----CCceeEEEE
Q psy6105          46 KRTSVKK-NSLNPFYNEALLFDVP----ANPYVKVYL   77 (194)
Q Consensus        46 ~~T~~~~-~t~nP~w~e~f~f~~~----~dpyv~v~l   77 (194)
                      ++|++++ +++||+|||.|.|++.    .+-++.|.+
T Consensus        50 ~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V   86 (144)
T 3l9b_A           50 FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQI   86 (144)
T ss_dssp             EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEE
T ss_pred             eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEE
Confidence            0477887 6999999999999877    344555554

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.63  E-value=0.099  Score=39.23  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             eEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCC----CCCceeEEEEeCCCC
Q psy6105          84 IRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI----GSDELMGCTAIGSSF  143 (194)
Q Consensus        84 ~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~----~~~~~iG~~~i~l~~  143 (194)
                      ...++|.+...+.+|.|+|++-..++.+......|.+++++..--    .....+|.+.++|-.
T Consensus        76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            456788888889999999999999999988889999999974321    223478999999854

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=94.15  E-value=0.0097  Score=50.15  Aligned_cols=8  Identities=13%  Similarity=-0.047  Sum_probs=0.0

Q ss_pred             EEeeccCC
Q psy6105          10 RADNYCRP   17 (194)
Q Consensus        10 r~~~~~a~   17 (194)
                      .|++|.+.
T Consensus        19 eAk~L~~~   26 (483)
T 3bxj_A           19 EARELPPK   26 (483)
T ss_dssp             --------
T ss_pred             EcCCcCCC
Confidence            34444443

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=94.10  E-value=0.016  Score=49.59  Aligned_cols=13  Identities=23%  Similarity=0.383  Sum_probs=7.9

Q ss_pred             eeEEEeeccCCCCC
Q psy6105           7 RSFRADNYCRPTIG   20 (194)
Q Consensus         7 ~~~r~~~~~a~~l~   20 (194)
                      ..++|++|.+ +..
T Consensus       399 ~V~~A~~L~~-D~~  411 (540)
T 3nsj_A          399 SNFRAEHLWG-DYT  411 (540)
T ss_dssp             EEEEEESCCC-SSC
T ss_pred             EEEEccCCCc-ccC
Confidence            3466777776 543

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=93.89  E-value=0.15  Score=45.71  Aligned_cols=70  Identities=19%  Similarity=0.334  Sum_probs=53.7

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCe--EeEEEeeEEecC-CCCceeeee-EEEe-cC--CCceeEEEEEc
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGK--RIRKKRTSVKKN-SLNPFYNEA-LLFD-VP--ANPYVKVYLVC   79 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~--~~~~~~T~~~~~-t~nP~w~e~-f~f~-~~--~dpyv~v~l~~   79 (194)
                      ..|.+++++|++|+.+    .+||||+|.+.+...  ...+++|+++++ ++||+|||. |.|. +.  .-.++++.+.+
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            5699999999999853    689999999986322  235789999886 699999998 9998 64  22466776654


Q ss_pred             C
Q psy6105          80 E   80 (194)
Q Consensus        80 ~   80 (194)
                      .
T Consensus       726 ~  726 (816)
T 3qr0_A          726 E  726 (816)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=93.27  E-value=0.033  Score=49.41  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=24.7

Q ss_pred             eEEecCCCCceeeeeEEEecCC--CceeEEEEEc
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA--NPYVKVYLVC   79 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~--dpyv~v~l~~   79 (194)
                      |+++++|+||+|||+|.|.+..  ...+++.+.+
T Consensus        60 Tkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D   93 (749)
T 1cjy_A           60 TRHFNNDINPVWNETFEFILDPNQENVLEITLMD   93 (749)
T ss_dssp             CCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred             cceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence            5778899999999999999873  3456666654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=93.27  E-value=0.033  Score=46.82  Aligned_cols=11  Identities=9%  Similarity=-0.079  Sum_probs=5.7

Q ss_pred             eEEEeeccCCC
Q psy6105           8 SFRADNYCRPT   18 (194)
Q Consensus         8 ~~r~~~~~a~~   18 (194)
                      .++|++|.+.+
T Consensus       393 v~~a~~L~~~d  403 (510)
T 3jzy_A          393 VIEATELKACK  403 (510)
T ss_dssp             EEEEESCCCCS
T ss_pred             eceeecCCCCC
Confidence            34555665544

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=93.05  E-value=0.28  Score=44.58  Aligned_cols=76  Identities=12%  Similarity=0.098  Sum_probs=53.2

Q ss_pred             CCceeEEEEEcCCeEe-EEeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCC--C----------CCcee
Q psy6105          69 ANPYVKVYLVCEGKRI-RKKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRI--G----------SDELM  134 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~--~----------~~~~i  134 (194)
                      .+.||.+.+..++..+ ....|..+....+|.|||.+.|++...++ .++.|.|+||+...-  +          ....|
T Consensus       235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~l  314 (940)
T 2wxf_A          235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPI  314 (940)
T ss_dssp             CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEE
T ss_pred             ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceE
Confidence            5678888887666544 24445555557789999999998766555 357899999985321  1          24589


Q ss_pred             EEEEeCCCCC
Q psy6105         135 GCTAIGSSFI  144 (194)
Q Consensus       135 G~~~i~l~~~  144 (194)
                      |.+.+++-..
T Consensus       315 g~~~~~lFd~  324 (940)
T 2wxf_A          315 AWANLMLFDY  324 (940)
T ss_dssp             EEEEEESBCT
T ss_pred             EEEeeeEECC
Confidence            9999988754

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=92.88  E-value=0.14  Score=46.28  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=52.0

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCe-EeEEEeeEEecC-CCCceeee-eEEEe-cC--CCceeEEEEEcC
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGK-RIRKKRTSVKKN-SLNPFYNE-ALLFD-VP--ANPYVKVYLVCE   80 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~-~~~~~~T~~~~~-t~nP~w~e-~f~f~-~~--~dpyv~v~l~~~   80 (194)
                      ..|++++++|++|+.+    .+||||+|.+.+... ...+++|+++++ ++||+||| +|.|. +.  .-.++++.+.+.
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            4799999999999853    689999999985211 123578999976 59999999 69998 54  234566666543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=91.88  E-value=0.066  Score=46.86  Aligned_cols=21  Identities=43%  Similarity=0.624  Sum_probs=19.2

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++|+||.|||+|.|.+.
T Consensus       213 T~v~~~tlnP~wne~f~f~~~  233 (674)
T 3pfq_A          213 TKTIKSSLNPEWNETFRFQLK  233 (674)
T ss_dssp             CCCCSSCSSCEEEEEEEEECC
T ss_pred             ccccccccCCCccceeeeecc
Confidence            678899999999999999876

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=90.61  E-value=0.3  Score=43.68  Aligned_cols=70  Identities=21%  Similarity=0.301  Sum_probs=51.1

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCe-EeEEEeeE-Eec-CCCCceeee-eEEE-ecC--CCceeEEEEEc
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGK-RIRKKRTS-VKK-NSLNPFYNE-ALLF-DVP--ANPYVKVYLVC   79 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~-~~~~~~T~-~~~-~t~nP~w~e-~f~f-~~~--~dpyv~v~l~~   79 (194)
                      ..|.+.+++|++|+.    +.+||||+|.+.+... ..++++|+ +++ +++||+||| +|.| .+.  .-.++++.+.+
T Consensus       678 ~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D  753 (799)
T 2zkm_X          678 TTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME  753 (799)
T ss_dssp             EEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEE
T ss_pred             eeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEEE
Confidence            469999999999985    4689999999975211 12357898 776 569999999 7999 764  22356666654


Q ss_pred             C
Q psy6105          80 E   80 (194)
Q Consensus        80 ~   80 (194)
                      .
T Consensus       754 ~  754 (799)
T 2zkm_X          754 E  754 (799)
T ss_dssp             T
T ss_pred             e
Confidence            3

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=90.18  E-value=0.44  Score=43.89  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             CCceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecCCC----CCCceeEEEEeCCC
Q psy6105          69 ANPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYDRI----GSDELMGCTAIGSS  142 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~~~----~~~~~iG~~~i~l~  142 (194)
                      .+.||.+.+..++..+. ...|..+. ..+|.|||.+.|++.-.++ .++.|.|+||+....    +....||-+.+.+-
T Consensus       375 ~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf  453 (1091)
T 3hhm_A          375 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF  453 (1091)
T ss_dssp             CCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred             ceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence            46899999986665443 34454443 4577899999999766555 356899999985432    13457999999987


Q ss_pred             CC
Q psy6105         143 FI  144 (194)
Q Consensus       143 ~~  144 (194)
                      ..
T Consensus       454 d~  455 (1091)
T 3hhm_A          454 DY  455 (1091)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=88.17  E-value=0.54  Score=43.43  Aligned_cols=76  Identities=13%  Similarity=0.018  Sum_probs=50.3

Q ss_pred             CCceeEEEEEcCCeEeE-EeeceeecCCCCCcccceEEEEecCCCC-CCceEEEEEEecC----CC--------------
Q psy6105          69 ANPYVKVYLVCEGKRIR-KKRTSVKKNSLNPFYNEALLFDVPASNV-NDVSLIIKVIDYD----RI--------------  128 (194)
Q Consensus        69 ~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~~~e~f~f~v~~~~l-~~~~l~i~V~d~~----~~--------------  128 (194)
                      .+.||.+.+..++..+. ...|..+....+|.|||.+.|++...++ .++.|.|+||+..    ..              
T Consensus       371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~  450 (1092)
T 2y3a_A          371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAVLDKVKTKKSTKTINPSKYQTI  450 (1092)
T ss_dssp             CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC---------------------
T ss_pred             ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEecCccccccccccccccccccc
Confidence            57788888876665442 3445555557789999999999877666 3578999999852    10              


Q ss_pred             ----CCCceeEEEEeCCCCC
Q psy6105         129 ----GSDELMGCTAIGSSFI  144 (194)
Q Consensus       129 ----~~~~~iG~~~i~l~~~  144 (194)
                          +....||.+.+++-..
T Consensus       451 ~~~~~~~~~lg~~~~~lFd~  470 (1092)
T 2y3a_A          451 RKAGKVHYPVAWVNTMVFDF  470 (1092)
T ss_dssp             ---------CCEEEEESBCT
T ss_pred             cccccccceeEEEeeeeECC
Confidence                1134788888888653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	194
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-33
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-29
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-28
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	6e-28
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-14
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-14
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-12
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	7e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-09
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-09
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-08
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	4e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	6e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-05
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-08
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	6e-05
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	6e-07
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-04
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	5e-04
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	5e-04

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  114 bits (285), Expect = 3e-33
 Identities = 38/101 (37%), Positives = 63/101 (62%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYVKV L    KRI KK+T VKK + N  +NE  +FD+P  ++ ++S+   V+D +R  
Sbjct: 37  DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS 96

Query: 130 SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
            +E++G   +G++  G G  HW E+ D PR+ + +W+ L +
Sbjct: 97  RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (261), Expect = 2e-29
 Identities = 44/102 (43%), Positives = 73/102 (71%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK++L+  GKR++KK+T++KKN+LNP+YNE+  F+VP   +  V +++ V+DYD+I
Sbjct: 46  SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 105

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           G ++ +G   +G +  G    HW +ML NPR+P+ QW+ L  
Sbjct: 106 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYVK  L+ EG+R++K++TS+KKN+LNP YNEAL+FDV   +V +V L I V+DYD IG
Sbjct: 42  DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG 101

Query: 130 SDELMGCTAIG-SSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
            +E++G   +G  +    GR+HW EML NPR+PV  W+ L+E
Sbjct: 102 HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 143

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =   99 bits (248), Expect = 6e-28
 Identities = 34/100 (34%), Positives = 57/100 (57%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++P+VK++L  +  +  K +T +KK +LNP +NE   +D+  S++   SL I V DYD  
Sbjct: 36  SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG 95

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
            S++ +G   +G S  G    HW E L N  + + +W+ L
Sbjct: 96  KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 135

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.6 bits (162), Expect = 4e-15
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVK+ L+ + K   K++T   K SLNP +NE   F +   +  D  L +++ D+D  
Sbjct: 36  SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK-ESDKDRRLSVEIWDWDLT 94

Query: 129 GSDELMGCTAIG-SSFIGIGRDHWLEMLDNP 158
             ++ MG  + G S     G D W ++L   
Sbjct: 95  SRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (158), Expect = 1e-14
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYD 126
           P NPYVK+Y + +     K+RT   K +L P +N+  ++  V      +  L I + D  
Sbjct: 34  PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA 93

Query: 127 RIG--SDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           R+     E +G   I              +          WY L
Sbjct: 94  RVREEESEFLGEILIE-------------LETALLDDEPHWYKL 124

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.6 bits (159), Expect = 2e-14
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 14/100 (14%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++PYVKV+L+ + K+  K  T V + +LNP +NE   F VP S +   +L++ V D+DR 
Sbjct: 55  SDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
              +++G   +            +  +D       +W  L
Sbjct: 113 SKHDIIGEFKVP-----------MNTVD-FGHVTEEWRDL 140

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 7e-12
 Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEAL-LFDVPASNVNDVSLIIKVIDYD 126
            ++PY+K+ ++ E K   K +T V + +L+P ++E    + +P + + +++L   ++ +D
Sbjct: 43  TSDPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100

Query: 127 RIGSDELMGCTAIGSSFIGIGRD---HWLEMLDNP 158
           R   D+++G   I  S I +         E++  P
Sbjct: 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.3 bits (132), Expect = 7e-11
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 79  CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTA 138
               R +K +T V + +LNP +NE   F VP + +    L   V D+DR    +L+G   
Sbjct: 47  LLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV 106

Query: 139 IGSSFIGIGRDHWLEMLDNPRQPVTQWYPLME 170
           +         D+ LE+ + P      W  ++E
Sbjct: 107 L---------DNLLELAEQPPD-RPLWRDILE 128

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (127), Expect = 4e-10
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 22/111 (19%)

Query: 68  PANPYVKVYLVCEGKRIR---------KKRTSVKKNSLNPFYNEALLFD-VPASNVNDVS 117
            ++P+VKVYL+    ++          K+RT   + SLNP +N+ +++  +    +   +
Sbjct: 38  YSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKT 97

Query: 118 LIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
           L + V DYDR  S++ +G   I            L           +WYPL
Sbjct: 98  LEVTVWDYDRFSSNDFLGEVLID-----------LSSTS-HLDNTPRWYPL 136

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 2e-09
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTS-VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            +P V V +   G+    ++T+ +  N  NP ++    F+V  +  +   +   V DYD 
Sbjct: 27  VDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEV--TVPDLALVRFMVEDYDS 84

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLD 156
              ++ +G + I  + +  G    + +L 
Sbjct: 85  SSKNDFIGQSTIPWNSLKQG-YRHVHLLS 112

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 21  NRSIPSVADPYVKVYLVCEGKRIRKKRTS-VKKNSLNPFYNEALLFDVPANPYVKVYLVC 79
           N++  S+ DP V V +   G+    ++T+ +  N  NP ++    F+V       V  + 
Sbjct: 20  NKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV 79

Query: 80  EGKRIRKK-----RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKV 122
           E      K     ++++  NSL   Y    L           +L +K+
Sbjct: 80  EDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFVKI 127

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 2e-09
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 68  PANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDR 127
            + P+  V +       R K    KK ++ P +       +    V    + I ++    
Sbjct: 23  ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV----IQIVLMRAAE 78

Query: 128 IGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
               E+            +G     E           W  L
Sbjct: 79  DPMSEVT-----------VGVSVLAERCKKNNGKAEFWLDL 108

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 8/49 (16%), Positives = 17/49 (34%)

Query: 29 DPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYL 77
           P+  V +       R K    KK ++ P +       +     +++ L
Sbjct: 25 QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVL 73

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-09
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           + YV+  +        + +T++KK  L+  + E L+  +    +   +L + +   DR  
Sbjct: 45  DCYVQGSVAN-RTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS 103

Query: 130 SDELMGCTAIGSSFIGIGR--DHWLEMLDNPRQPVT 163
              + G   +G     +      W E+      P +
Sbjct: 104 RHSVAGELRLGLDGTSVPLGAAQWGELK--TSGPSS 137

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 50.3 bits (119), Expect = 6e-09
 Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 31  YVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKKRTS 90
            +K+  +CE   ++    S++            +   P    +  Y+       R  +T+
Sbjct: 7   LLKIK-ICEAVSLKPTAWSLRDA----------VGPRPQTFLLDPYIALNVDDSRIGQTA 55

Query: 91  VKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDH 150
            K+ + +P +++  + DV           + V     IG D+ +    I           
Sbjct: 56  TKQKTNSPAWHDEFVTDVCNGRKI----ELAVFHDAPIGYDDFVANCTI----------Q 101

Query: 151 WLEMLDNPRQPVTQWYPL 168
           + E+L N  +    W  L
Sbjct: 102 FEELLQNGSRHFEDWIDL 119

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 11 ADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPAN 70
               R  +G R    + DPY+           R  +T+ K+ + +P +++  + DV   
Sbjct: 21 TAWSLRDAVGPRPQTFLLDPYIA----LNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG 76

Query: 71 PYVKVYLVCEGKR 83
            +++ +  +   
Sbjct: 77 RKIELAVFHDAPI 89

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 17/111 (15%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
            +PYV++++        +KRT    N +NP +NE   F+       +  L I ++D +  
Sbjct: 27  PDPYVELFIS--TTPDSRKRTRHFNNDINPVWNET--FEFILDPNQENVLEITLMDANY- 81

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
             DE +G      S +               +     +   +     + +S
Sbjct: 82  VMDETLGTATFTVSSM------------KVGEKKEVPFIFNQVTEMVLEMS 120

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 64  LFDVPANPYVKVYLV---CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLII 120
           L +     YV+V L     + KR  + + S   NS+NP + E              SL +
Sbjct: 13  LSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRV 72

Query: 121 KVIDYDR 127
            V++   
Sbjct: 73  AVMEEGN 79

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 6e-05
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 25 PSVADPYVKVYLV---CEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLV 78
                YV+V L     + KR  + + S   NS+NP + E               L 
Sbjct: 15 ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR 71

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.7 bits (105), Expect = 6e-07
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
            +PYV++          +K    +     P +NE  +F V         L  K+ D D  
Sbjct: 31  MDPYVQLTCRT----QDQKSNVAEGMGTTPEWNETFIFTVSEG---TTELKAKIFDKDVG 83

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLM--ETVPGQIPLS 179
             D+ +G   I            LE +          Y ++  E   G+I ++
Sbjct: 84  TEDDAVGEATIP-----------LEPVFVEGSIPPTAYNVVKDEEYKGEIWVA 125

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 70  NPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIG 129
           +PYV+V +       + K+T    N+ +P + + L   V   +        +V  +  + 
Sbjct: 28  SPYVEVTVDG-----QSKKTEKCNNTNSPKWKQPLTVIVTPVSKL----HFRVWSHQTLK 78

Query: 130 SDELMGCTAI 139
           SD L+G  A+
Sbjct: 79  SDVLLGTAAL 88

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 20/100 (20%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
            N YV +      K    K T++      P + +  +F++   N  D+ L ++V +   I
Sbjct: 20  FNTYVTL------KVQNVKSTTIAVRGSQPSWEQDFMFEI---NRLDLGLTVEVWNKGLI 70

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPL 168
             D ++G   I              +  +  +   +W  L
Sbjct: 71  -WDTMVGTVWI---------PLR-TIRQSNEEGPGEWLTL 99

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 17/111 (15%)

Query: 69  ANPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRI 128
           ++P+  +          + +T     +LNP +N+   F +         L + V D D  
Sbjct: 27  SDPFCLLE-----LGNDRLQTHTVYKNLNPEWNKVFTFPI---KDIHDVLEVTVFDEDGD 78

Query: 129 GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYPLMETVPGQIPLS 179
              + +G  AI    I  G+ +   +         +   L +   G I L 
Sbjct: 79  KPPDFLGKVAIPLLSIRDGQPNCYVL---------KNKDLEQAFKGVIYLE 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	194
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.96
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.95
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.95
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.92
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.88
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.87
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.85
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.84
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.84
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.83
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.81
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.78
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.77
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.77
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.77
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.76
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.75
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.67
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.61
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.47
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	98.3
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	97.31
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	97.05
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	96.95
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	96.92
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	96.91
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	96.85
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	96.82
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	96.79
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	96.68
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.56
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	96.51
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	96.37
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	96.36
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	96.35
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	96.3
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	96.24
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	95.58
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	95.22
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	95.01
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	93.52
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	93.34

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=2e-28  Score=173.44  Aligned_cols=124  Identities=31%  Similarity=0.585  Sum_probs=98.7

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+.+.+++|++|+++|..|.+||||+|++.++.....                                         
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~-----------------------------------------   52 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS-----------------------------------------   52 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEE-----------------------------------------
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCc-----------------------------------------
Confidence            346899999999999999999999999999987633322                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||.|||+|.|.++..++....|.|+|||++.++++++||++.|++.+.+.+.+||.+|+..|++++++|
T Consensus        53 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~W  132 (138)
T d1w15a_          53 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKW  132 (138)
T ss_dssp             EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEE
T ss_pred             cccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeEC
Confidence            44555666666666666666776666666678999999999999999999999999999889999999999999999999


Q ss_pred             EEccC
Q psy6105         166 YPLME  170 (194)
Q Consensus       166 ~~L~~  170 (194)
                      |+|++
T Consensus       133 h~L~~  137 (138)
T d1w15a_         133 HMLCD  137 (138)
T ss_dssp             EECBC
T ss_pred             eEccc
Confidence            99975

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.6e-27  Score=168.38  Aligned_cols=124  Identities=28%  Similarity=0.461  Sum_probs=102.6

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+++.+++|++|+.++..|.+||||+|++.++.....                                         
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~-----------------------------------------   52 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKA-----------------------------------------   52 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CC-----------------------------------------
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccce-----------------------------------------
Confidence            457899999999999999999999999999987632222                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||+|||+|.|.++.+++....|.|+|||++.++++++||++.|++.+...+.+||.+|+..|++++++|
T Consensus        53 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~W  132 (137)
T d2cm5a1          53 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERW  132 (137)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEE
T ss_pred             eecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEc
Confidence            44555666666666666666666656666678999999999999999999999999998888899999999999999999


Q ss_pred             EEccC
Q psy6105         166 YPLME  170 (194)
Q Consensus       166 ~~L~~  170 (194)
                      |+|++
T Consensus       133 h~L~~  137 (137)
T d2cm5a1         133 HQLQN  137 (137)
T ss_dssp             EECBC
T ss_pred             eeccC
Confidence            99975

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.8e-27  Score=171.04  Aligned_cols=126  Identities=36%  Similarity=0.726  Sum_probs=105.9

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+.+.+++|++|++++..+.+||||+|++.+.++...                                         
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~-----------------------------------------   62 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK-----------------------------------------   62 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE-----------------------------------------
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcccc-----------------------------------------
Confidence            347899999999999999999999999999987632222                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      +++|++++++.||+|||+|.|.++.+++....|.|+|||++.++++++||++.|++.+.+.+.+||.+|+..|++++++|
T Consensus        63 ~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~W  142 (157)
T d1uowa_          63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW  142 (157)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEE
T ss_pred             ceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEe
Confidence            44566666666777777777777666666678999999999999999999999999999889999999999999999999


Q ss_pred             EEccCCC
Q psy6105         166 YPLMETV  172 (194)
Q Consensus       166 ~~L~~~~  172 (194)
                      |+|.+..
T Consensus       143 h~L~~~~  149 (157)
T d1uowa_         143 HTLQVEE  149 (157)
T ss_dssp             EECBCHH
T ss_pred             EeCCCCc
Confidence            9998743

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.5e-27  Score=168.33  Aligned_cols=125  Identities=43%  Similarity=0.798  Sum_probs=101.7

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..+++.+++|+||+.++..|.+||||+|++.++.....                                         
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~-----------------------------------------   57 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK-----------------------------------------   57 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTS-----------------------------------------
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccce-----------------------------------------
Confidence            346899999999999999999999999999987632222                                         


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCC-cchhhHHHHhhCCCCceEe
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIG-IGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~W~~~l~~p~~~~~~  164 (194)
                      +++|++++++.||+|||.|.|.+...++....|.|.|||++.++++++||++.|++.... .+.+||.+|+.+|++++++
T Consensus        58 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~  137 (145)
T d1dqva2          58 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEH  137 (145)
T ss_dssp             CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCS
T ss_pred             eecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeE
Confidence            345555555666666666666665555566689999999999999999999999998875 4788999999999999999


Q ss_pred             EEEccCC
Q psy6105         165 WYPLMET  171 (194)
Q Consensus       165 W~~L~~~  171 (194)
                      ||+|.+.
T Consensus       138 Wh~L~~~  144 (145)
T d1dqva2         138 WHQLVEE  144 (145)
T ss_dssp             CCCCBBC
T ss_pred             eEECCCC
Confidence            9999885

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.1e-23  Score=145.30  Aligned_cols=114  Identities=26%  Similarity=0.421  Sum_probs=84.7

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..|++.+++|++|+++|..|.+||||+|++.+......++                                        
T Consensus        15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~----------------------------------------   54 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ----------------------------------------   54 (132)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCE----------------------------------------
T ss_pred             CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCcccc----------------------------------------
Confidence            4689999999999999999999999999998763333334                                        


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                       +|++++++.||+|||+|.|.+..... ...|.|+|||++.++++++||.+.|++..+.             ...+.+||
T Consensus        55 -kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~-------------~~~~~~W~  119 (132)
T d1a25a_          55 -KTKTIKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQ-------------KAGVDGWF  119 (132)
T ss_dssp             -ECCCCSSCSSCEEEEEEEEECCSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHT-------------TCCEEEEE
T ss_pred             -EEeeecCCCCCccceEEEEEeEcccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcC-------------CCCCCeEE
Confidence             45555555555555555555443222 2379999999999999999999999997432             34578999


Q ss_pred             EccCCCCCC
Q psy6105         167 PLMETVPGQ  175 (194)
Q Consensus       167 ~L~~~~~~~  175 (194)
                      +|.+.+.|+
T Consensus       120 ~L~~~~~ge  128 (132)
T d1a25a_         120 KLLSQEEGE  128 (132)
T ss_dssp             ECBCHHHHT
T ss_pred             ECCCCCCCc
Confidence            998866544

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.1e-23  Score=147.87  Aligned_cols=122  Identities=27%  Similarity=0.439  Sum_probs=95.4

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .|++.+++|++|+++|..|.+||||+|++.+..     .+.......                           ....++
T Consensus        19 ~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~-----~~~~~~~~~---------------------------~~~~~~   66 (142)
T d1rh8a_          19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGR-----GQVMVVQNA---------------------------SAEYKR   66 (142)
T ss_dssp             EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSS-----CCCEECCCC---------------------------CHHHHT
T ss_pred             EEEEEEEEeECCCCcCCCCCCCcCEEEEEecCc-----ccccccccC---------------------------CCceee
Confidence            589999999999999999999999999998762     111111110                           011257


Q ss_pred             eceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                      +|++++++.||.|||+|.|. +..+++....|.|+|||++.++++++||++.|+|..+..            +....+||
T Consensus        67 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~------------~~~~~~W~  134 (142)
T d1rh8a_          67 RTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH------------LDNTPRWY  134 (142)
T ss_dssp             TTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG------------GTTCCEEE
T ss_pred             eccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCC------------CCCceEEE
Confidence            88888889999999999997 444455566899999999999999999999999997642            45568999


Q ss_pred             EccCCCC
Q psy6105         167 PLMETVP  173 (194)
Q Consensus       167 ~L~~~~~  173 (194)
                      +|++.+.
T Consensus       135 ~L~~~~~  141 (142)
T d1rh8a_         135 PLKEQTE  141 (142)
T ss_dssp             ECBCCCC
T ss_pred             ECcCcCC
Confidence            9998764

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.1e-21  Score=139.15  Aligned_cols=110  Identities=25%  Similarity=0.467  Sum_probs=85.1

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..|++.+++|++|+++|..|.+||||+|++.+..  ..+                                        
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~--~~~----------------------------------------   70 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKK----------------------------------------   70 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC--CSC----------------------------------------
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCC--Cee----------------------------------------
Confidence            45799999999999999999999999999998762  122                                        


Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                       ++|++++++.||+|||+|.|.+...++....|.|+|||++.++++++||++.|+|..+.            .+....+|
T Consensus        71 -~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~------------~~~~~~~W  137 (143)
T d1rsya_          71 -FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD------------FGHVTEEW  137 (143)
T ss_dssp             -EECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC------------CSSCEEEE
T ss_pred             -EEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhcc------------CCCCCccE
Confidence             34555555555556665556554444444589999999999999999999999998763            36677899


Q ss_pred             EEccC
Q psy6105         166 YPLME  170 (194)
Q Consensus       166 ~~L~~  170 (194)
                      |+|++
T Consensus       138 ~~L~s  142 (143)
T d1rsya_         138 RDLQS  142 (143)
T ss_dssp             EECBC
T ss_pred             EeCCC
Confidence            99976

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-21  Score=136.03  Aligned_cols=118  Identities=17%  Similarity=0.192  Sum_probs=85.4

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      .+++.++.|++|+++|..|.+||||++.+++.     +.+|+                                      
T Consensus         7 ~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~-----~~~T~--------------------------------------   43 (126)
T d2ep6a1           7 ILQVKVLKAADLLAADFSGKSDPFCLLELGND-----RLQTH--------------------------------------   43 (126)
T ss_dssp             EEEEEEEEEESCCCSSSSSCCCEEEEEEETTE-----EEECC--------------------------------------
T ss_pred             EEEEEEEEeECCCCCCCCCCcCeEEEEEcCCe-----EEEEE--------------------------------------
Confidence            58999999999999999999999999998643     34444                                      


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                         +++++.||+|||+|.|.+...  . ..|.|+|||++.++++++||++.|++..+.              ....+||.
T Consensus        44 ---~~~~t~nP~wne~f~f~v~~~--~-~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~--------------~~~~~~~~  103 (126)
T d2ep6a1          44 ---TVYKNLNPEWNKVFTFPIKDI--H-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIR--------------DGQPNCYV  103 (126)
T ss_dssp             ---CCSSCSSCCCCEEEEEEESCT--T-CEEEEEEEEEETTEEEEECCBCEEEGGGCC--------------SSCCEECC
T ss_pred             ---eeCCceeEEEEEEEEEEEecc--C-ceeEEEEEEccCCcCcceEEEEEEEHHHCC--------------CCCceEEE
Confidence               444455555555555555432  1 379999999999999999999999998663              22357999


Q ss_pred             ccCCCCCCccccCCCCcceeeeec
Q psy6105         168 LMETVPGQIPLSHSSNLPSSLSCL  191 (194)
Q Consensus       168 L~~~~~~~~~~~~~~~~~~~~~~~  191 (194)
                      |........ .  .|.+.+++.++
T Consensus       104 l~~~~~~~~-~--~G~i~l~~~~i  124 (126)
T d2ep6a1         104 LKNKDLEQA-F--KGVIYLEMDLI  124 (126)
T ss_dssp             CBCSCTTSC-C--SSEEEEEEEEE
T ss_pred             ccccCCCCc-e--eEEEEEEEEEE
Confidence            977654432 2  35566666654

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.2e-21  Score=134.58  Aligned_cols=113  Identities=26%  Similarity=0.503  Sum_probs=83.1

Q ss_pred             CceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           5 GSRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      .+..+++.++.|++|+.+|..|.+||||++++.++.  ..                                        
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~--~~----------------------------------------   53 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR--KK----------------------------------------   53 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST--TS----------------------------------------
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCC--Cc----------------------------------------
Confidence            456799999999999999999999999999997651  11                                        


Q ss_pred             EEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEe
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQ  164 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~  164 (194)
                       +++|++++++.||+|||+|.|.+...++....|.|+|||++.++++++||++.|++...         +... ......
T Consensus        54 -~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~---------l~~~-~~~~~~  122 (130)
T d1dqva1          54 -KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLE---------LAEQ-PPDRPL  122 (130)
T ss_dssp             -CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTG---------GGSS-CSSCCC
T ss_pred             -eEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhh---------hhcC-CCCCcE
Confidence             34455555555666666666665555555568999999999999999999999986532         1212 233457


Q ss_pred             EEEccC
Q psy6105         165 WYPLME  170 (194)
Q Consensus       165 W~~L~~  170 (194)
                      ||+|.+
T Consensus       123 W~~L~~  128 (130)
T d1dqva1         123 WRDILE  128 (130)
T ss_dssp             CEECBC
T ss_pred             EEeccc
Confidence            999976

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.4e-21  Score=132.12  Aligned_cols=110  Identities=22%  Similarity=0.365  Sum_probs=77.5

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeE
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIR   85 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~   85 (194)
                      +..|++.++.|++|++++.++.+||||+|++.++.....+                                        
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~----------------------------------------   52 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNK----------------------------------------   52 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGE----------------------------------------
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccc----------------------------------------
Confidence            4579999999999999999999999999999876333333                                        


Q ss_pred             EeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCC--CCCceeEEEEeCCCCCCcchhhHHHHhhCCCCce
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRI--GSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPV  162 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~--~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~  162 (194)
                       ++|++++++.||+|||+|.|. +..+++....|.|+|||++.+  +++++||++.|+|..+.             ....
T Consensus        53 -~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~-------------~~~~  118 (125)
T d2bwqa1          53 -RRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-------------LDDE  118 (125)
T ss_dssp             -EECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCC-------------CSSC
T ss_pred             -cccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcC-------------CCCC
Confidence             445555555555555555554 344445556899999998875  34669999999998663             2234


Q ss_pred             EeEEEcc
Q psy6105         163 TQWYPLM  169 (194)
Q Consensus       163 ~~W~~L~  169 (194)
                      .+||+|+
T Consensus       119 ~~Wy~L~  125 (125)
T d2bwqa1         119 PHWYKLQ  125 (125)
T ss_dssp             EEEEECC
T ss_pred             CEEEeCc
Confidence            6899995

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.9e-19  Score=126.65  Aligned_cols=75  Identities=19%  Similarity=0.330  Sum_probs=63.7

Q ss_pred             EeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeE
Q psy6105          86 KKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQW  165 (194)
Q Consensus        86 ~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W  165 (194)
                      .++|++++++.||+|||+|.|.+...++....|.|+|||++.++++++||++.|+|..+..            ......|
T Consensus        60 ~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~W  127 (138)
T d1wfma_          60 EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV------------PLGAAQW  127 (138)
T ss_dssp             EEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSS------------CTTCCEE
T ss_pred             ceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccC------------CCCceEe
Confidence            5678888888888899989998887777778999999999999999999999999987632            4556899


Q ss_pred             EEccCCC
Q psy6105         166 YPLMETV  172 (194)
Q Consensus       166 ~~L~~~~  172 (194)
                      |.|.+..
T Consensus       128 ~~L~~~~  134 (138)
T d1wfma_         128 GELKTSG  134 (138)
T ss_dssp             EECCCCS
T ss_pred             EeCCCCC
Confidence            9998854

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=1.9e-19  Score=126.34  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=86.9

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      =.|++.+++|++|+++|..|.+||||++++.+.     ..+|++++                                  
T Consensus        10 G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~-----~~~t~~~~----------------------------------   50 (136)
T d1wfja_          10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-----DQKSNVAE----------------------------------   50 (136)
T ss_dssp             EEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-----EEECCCCT----------------------------------
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCccEEEEEeee-----eEEEEEEe----------------------------------
Confidence            379999999999999999999999999988654     33333332                                  


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWY  166 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~  166 (194)
                            .++.||+|||+|.|.+....   ..|.|+|||++.+++|++||++.|+|..          ++.. +.....||
T Consensus        51 ------~~~~nP~Wne~f~f~v~~~~---~~L~v~V~d~d~~~~d~~iG~~~i~L~~----------l~~~-~~~~~~~~  110 (136)
T d1wfja_          51 ------GMGTTPEWNETFIFTVSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEP----------VFVE-GSIPPTAY  110 (136)
T ss_dssp             ------TCCSSCEEEEEEEEEEESSC---CEEEEEECCSSSCTTTCCSEEEEEESHH----------HHHH-SEEEEEEE
T ss_pred             ------cCCCcEEEeeEEEEEEcCcc---ceEEEEEEEecCCCCCCEEEEEEEEhHH----------hccc-CCcCcEEE
Confidence                  13455556665556554322   3699999999999999999999999963          2222 45557899


Q ss_pred             EccCCCCCCccccCCCCcceeeeecCC
Q psy6105         167 PLMETVPGQIPLSHSSNLPSSLSCLNG  193 (194)
Q Consensus       167 ~L~~~~~~~~~~~~~~~~~~~~~~~~~  193 (194)
                      +|....   +   ..|.+.+++++.|.
T Consensus       111 ~l~~~~---~---~~G~i~l~l~~~p~  131 (136)
T d1wfja_         111 NVVKDE---E---YKGEIWVALSFKPS  131 (136)
T ss_dssp             EEEETT---E---EEEEEEEEEEEEEC
T ss_pred             EecCCC---c---cCEEEEEEEEEEeC
Confidence            996421   1   23567777888764

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-18  Score=121.33  Aligned_cols=113  Identities=20%  Similarity=0.396  Sum_probs=81.5

Q ss_pred             ceeEEEeeccCCCCCCCCCCCC-CCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSV-ADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~-~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ...|++.+++|++|+.+|..+. +||||++.+.++  ...+                                       
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~--~~~~---------------------------------------   59 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE--KKHK---------------------------------------   59 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT--TCSE---------------------------------------
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCC--CCEe---------------------------------------
Confidence            3468999999999999987764 799999999876  1223                                       


Q ss_pred             EEeeceeecCCCCCcccceEEEE-ecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          85 RKKRTSVKKNSLNPFYNEALLFD-VPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        85 ~~~kT~~~~~t~nP~~~e~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                        ++|++++++.||.|||+|.|. ++..++....|.|+|||++.++++++||++.|+|..+..           ....+.
T Consensus        60 --~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~-----------~~~~~~  126 (138)
T d1ugka_          60 --VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL-----------SEGKML  126 (138)
T ss_dssp             --EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCC-----------TTCCEE
T ss_pred             --EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccC-----------CCCeEE
Confidence              345555555555555555554 444555566899999999999999999999999987631           234556


Q ss_pred             eEEEccCCC
Q psy6105         164 QWYPLMETV  172 (194)
Q Consensus       164 ~W~~L~~~~  172 (194)
                      .|..+...+
T Consensus       127 ~~~~~~~~p  135 (138)
T d1ugka_         127 MNREIISGP  135 (138)
T ss_dssp             EEEECBSSS
T ss_pred             EEeeccCCC
Confidence            777765443

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.3e-19  Score=122.91  Aligned_cols=123  Identities=20%  Similarity=0.187  Sum_probs=83.2

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+.+++++|++++.++..+.+||||+|.+++.     ..+|+++++|.||.|||.|.                      
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~----------------------   58 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ-----SKKTEKCNNTNSPKWKQPLT----------------------   58 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTE-----EEECCCCSSCSSCEEEEEEE----------------------
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCe-----EEeeEEEEecccEEEcceEE----------------------
Confidence            468999999999999999999999999998754     45566666666666555555                      


Q ss_pred             eeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCC-CC--ceE
Q psy6105          87 KRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNP-RQ--PVT  163 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p-~~--~~~  163 (194)
                                         |.+...    ..|.|+|||++.+++|++||++.++|..          ++... ++  ...
T Consensus        59 -------------------f~~~~~----~~l~~~V~d~d~~~~d~~iG~~~i~L~~----------l~~~~~~~~~~~~  105 (133)
T d2nq3a1          59 -------------------VIVTPV----SKLHFRVWSHQTLKSDVLLGTAALDIYE----------TLKSNNMKLEEVV  105 (133)
T ss_dssp             -------------------EEECTT----CEEEEEEEECCSSSCCEEEEEEEEEHHH----------HHHHTTTEESSEE
T ss_pred             -------------------EEEEec----ceeEEEEEEccCCCCCceEEEEEEEHHH----------hhhhcCCceeeEE
Confidence                               444321    2789999999999999999999999863          33322 22  234


Q ss_pred             eEEEccCCCCCCccccCCCCcceeeeecC
Q psy6105         164 QWYPLMETVPGQIPLSHSSNLPSSLSCLN  192 (194)
Q Consensus       164 ~W~~L~~~~~~~~~~~~~~~~~~~~~~~~  192 (194)
                      .|..|.....   +....|+|.+.++.|.
T Consensus       106 ~~l~l~~~~~---~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1         106 VTLQLGGDKE---PTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEESSC---TTSEEEEEEEEEESEE
T ss_pred             EEEecCCCCC---CceEEEEEEEEEeeEE
Confidence            4555544332   3335567777777653

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.6e-19  Score=123.92  Aligned_cols=109  Identities=20%  Similarity=0.316  Sum_probs=78.7

Q ss_pred             CceeEEEeeccCCCCCCC---CCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCC
Q psy6105           5 GSRSFRADNYCRPTIGNR---SIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEG   81 (194)
Q Consensus         5 ~~~~~r~~~~~a~~l~~~---d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~   81 (194)
                      +|-.|+++++.|+||+..   |..|.+||||++.+++.  ...+.+|++++++.                          
T Consensus         1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~--~~~~~~T~~~~~t~--------------------------   52 (126)
T d1rlwa_           1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT--PDSRKRTRHFNNDI--------------------------   52 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS--TTCCEECCCCTTCS--------------------------
T ss_pred             CCcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCc--ccceeEeeecCCCc--------------------------
Confidence            477899999999999874   55789999999999764  12234444444444                          


Q ss_pred             eEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCc
Q psy6105          82 KRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQP  161 (194)
Q Consensus        82 ~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~  161 (194)
                                     ||.|||+|.|.+...  ....|.|+|||++.. ++++||++.|+|..+.            ++..
T Consensus        53 ---------------nP~wne~f~f~i~~~--~~~~L~v~V~d~d~~-~d~~lG~~~i~L~~l~------------~~~~  102 (126)
T d1rlwa_          53 ---------------NPVWNETFEFILDPN--QENVLEITLMDANYV-MDETLGTATFTVSSMK------------VGEK  102 (126)
T ss_dssp             ---------------SCEEEEEEEEEECTT--SCCEEEEEEEECCSS-CCEEEEEEEEEGGGSC------------TTCE
T ss_pred             ---------------cceeceeeeecccCc--ccCcEEEEEEECCCC-CCCeEEEEEEEHHHcc------------CCCe
Confidence                           455555445544322  224799999999876 5799999999998763            3677


Q ss_pred             eEeEEEccCC
Q psy6105         162 VTQWYPLMET  171 (194)
Q Consensus       162 ~~~W~~L~~~  171 (194)
                      ...||+|.+.
T Consensus       103 ~~~~~~L~~~  112 (126)
T d1rlwa_         103 KEVPFIFNQV  112 (126)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEEccCC
Confidence            8899999664

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.5e-18  Score=120.93  Aligned_cols=108  Identities=19%  Similarity=0.297  Sum_probs=74.4

Q ss_pred             eeEEEeeccCCCCCC--CCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEe
Q psy6105           7 RSFRADNYCRPTIGN--RSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRI   84 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~--~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~   84 (194)
                      ..+++.+++|++|+.  +|.+|.+||||+|++.+......                                        
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~----------------------------------------   43 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTG----------------------------------------   43 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCE----------------------------------------
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcE----------------------------------------
Confidence            579999999999964  56778899999999976421222                                        


Q ss_pred             EEeeceeec-CCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceE
Q psy6105          85 RKKRTSVKK-NSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVT  163 (194)
Q Consensus        85 ~~~kT~~~~-~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~  163 (194)
                       +++|++++ +++||.|||+|.|.+.....  ..|.|+|||+|.++++++||++.|+|..+..               ..
T Consensus        44 -~~~T~~v~~~~~nP~wne~f~f~~~~~~~--~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~---------------g~  105 (131)
T d1qasa2          44 -SRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ---------------GY  105 (131)
T ss_dssp             -EEECCCCSSCSSSCEEEEEEEEEESCGGG--CEEEEEEEECCTTTCCEEEEEEEEEGGGBCC---------------EE
T ss_pred             -EEEEEEEecccCCceEEEEEEEEEEcchh--ceEEEEEEEecCCCCCcEEEEEEEEEeccCC---------------CC
Confidence             33444443 23466666666665544332  3799999999999999999999999987632               24


Q ss_pred             eEEEccCCC
Q psy6105         164 QWYPLMETV  172 (194)
Q Consensus       164 ~W~~L~~~~  172 (194)
                      +|++|.+..
T Consensus       106 ~~~~L~~~~  114 (131)
T d1qasa2         106 RHVHLLSKN  114 (131)
T ss_dssp             EEEEEECTT
T ss_pred             EEEECCCCC
Confidence            689997754

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.75  E-value=2.5e-18  Score=120.56  Aligned_cols=106  Identities=18%  Similarity=0.292  Sum_probs=74.9

Q ss_pred             ceeEEEeeccCCCCCCCC-----------CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeE
Q psy6105           6 SRSFRADNYCRPTIGNRS-----------IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVK   74 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d-----------~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~   74 (194)
                      |-.++++++.|++|++.+           ..+.+||||+|.++..    ...+|+++                       
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~----~~~~T~~~-----------------------   57 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS----RIGQTATK-----------------------   57 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTE----EEEECCCC-----------------------
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCC----cCcEeeEE-----------------------
Confidence            456899999999998765           3456677777776432    12344444                       


Q ss_pred             EEEEcCCeEeEEeeceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHH
Q psy6105          75 VYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEM  154 (194)
Q Consensus        75 v~l~~~~~~~~~~kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~  154 (194)
                                        +++.||+|||+|.|.+...    ..|.|+|||++.++++++||.+.|+|.          ++
T Consensus        58 ------------------~~t~~P~Wne~f~f~v~~~----~~l~i~V~d~~~~~~d~~iG~~~i~l~----------~l  105 (136)
T d1gmia_          58 ------------------QKTNSPAWHDEFVTDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFE----------EL  105 (136)
T ss_dssp             ------------------SSCSSCEEEEEEEEEEEEE----CEEEEEEEECCSSSSCEEEEEEEEEHH----------HH
T ss_pred             ------------------cCCCCccCccEEEEEEecC----CceEEEEEEecCCCCceeEEEEEEEHH----------Hh
Confidence                              4445555555555554321    378999999999999999999999996          55


Q ss_pred             hhCCCCceEeEEEccC
Q psy6105         155 LDNPRQPVTQWYPLME  170 (194)
Q Consensus       155 l~~p~~~~~~W~~L~~  170 (194)
                      +..+......|++|.+
T Consensus       106 ~~~~~~~~~~w~~L~p  121 (136)
T d1gmia_         106 LQNGSRHFEDWIDLEP  121 (136)
T ss_dssp             TSTTCSEEEEEEECBS
T ss_pred             hhcCCcceeEEEeCCC
Confidence            6666677889999975

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=6.4e-17  Score=111.98  Aligned_cols=101  Identities=17%  Similarity=0.228  Sum_probs=70.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      -|.+++.-|++|.++|   ..||||+|.++..                                              +.
T Consensus         3 ~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~----------------------------------------------k~   33 (128)
T d2cjta1           3 LLCVGVKKAKFDGAQE---KFNTYVTLKVQNV----------------------------------------------KS   33 (128)
T ss_dssp             EEEEEEEEEECSSCGG---GCEEEEEEEETTE----------------------------------------------EE
T ss_pred             EEEEEEEEEECCCCCC---CcCeEEEEEeCCE----------------------------------------------EE
Confidence            4678889999998876   5789998888532                                              33


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      +|.++++ .||+|||.|.|.+...   ...|.|+|||++.. +|++||++.|+|..+          +...+....+||+
T Consensus        34 ~T~~~k~-~nP~Wne~f~f~v~~~---~~~L~v~V~d~~~~-~d~~lG~~~I~L~~l----------~~~~~~~~~~W~~   98 (128)
T d2cjta1          34 TTIAVRG-SQPSWEQDFMFEINRL---DLGLTVEVWNKGLI-WDTMVGTVWIPLRTI----------RQSNEEGPGEWLT   98 (128)
T ss_dssp             ECCCEES-SSCEEEEEEEEEECCC---SSEEEEEEEECCSS-CEEEEEEEEEEGGGS----------CBCSSCCCCEEEE
T ss_pred             EEEEecC-CCCeEEEEEEEeeccc---cceEEEEEEeCCCc-CCcceEEEEEEehhh----------ccCCCCCCCeeEE
Confidence            4444432 3566666666665432   23799999999876 589999999999865          2233456678999


Q ss_pred             ccCCC
Q psy6105         168 LMETV  172 (194)
Q Consensus       168 L~~~~  172 (194)
                      |....
T Consensus        99 L~~~~  103 (128)
T d2cjta1          99 LDSQA  103 (128)
T ss_dssp             CBC--
T ss_pred             CCccc
Confidence            97754

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=7.1e-16  Score=105.98  Aligned_cols=107  Identities=14%  Similarity=0.143  Sum_probs=72.0

Q ss_pred             eEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEEe
Q psy6105           8 SFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRKK   87 (194)
Q Consensus         8 ~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~~   87 (194)
                      -+|+.+-....-+.++.+|.+||||+|++.+.....                                         +.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~-----------------------------------------~~~   42 (123)
T d1bdya_           4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTD-----------------------------------------RGK   42 (123)
T ss_dssp             EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGG-----------------------------------------GTT
T ss_pred             eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccc-----------------------------------------cce
Confidence            356665555555566778889999999987531111                                         123


Q ss_pred             eceeecCCCCCcccceEEEEecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcchhhHHHHhhCCCCceEeEEE
Q psy6105          88 RTSVKKNSLNPFYNEALLFDVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGRDHWLEMLDNPRQPVTQWYP  167 (194)
Q Consensus        88 kT~~~~~t~nP~~~e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~W~~~l~~p~~~~~~W~~  167 (194)
                      +|.++++|+||+|||+|.|.+...    ..|.|.|||+|    ++++|.+.+++..+.       ......+.....|++
T Consensus        43 ~t~~~kkT~nP~WnE~F~~~v~~~----~~l~i~V~d~d----d~~~g~~~i~l~~l~-------~~~~~~~~~~~~W~~  107 (123)
T d1bdya_          43 TLVQKKPTMYPEWKSTFDAHIYEG----RVIQIVLMRAA----EDPMSEVTVGVSVLA-------ERCKKNNGKAEFWLD  107 (123)
T ss_dssp             BEEECSCCBCCCTTCEEEEECCTT----CEEEEEEEEET----TEEEEEEEEEHHHHH-------HHHHTTTTEEEEEEE
T ss_pred             EEEEeCCCCCcccceEEEEEEccc----cEEEEEEEEcc----ccccCccEEehhhee-------eccccCCCcccEEEe
Confidence            455666677777777777766432    37899999975    689999999987542       222234678889999


Q ss_pred             ccC
Q psy6105         168 LME  170 (194)
Q Consensus       168 L~~  170 (194)
                      |.+
T Consensus       108 L~~  110 (123)
T d1bdya_         108 LQP  110 (123)
T ss_dssp             CBS
T ss_pred             CCC
Confidence            964

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-14  Score=96.63  Aligned_cols=94  Identities=21%  Similarity=0.330  Sum_probs=62.6

Q ss_pred             eeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCCCceeEEEEEcCCeEeEE
Q psy6105           7 RSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPANPYVKVYLVCEGKRIRK   86 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~dpyv~v~l~~~~~~~~~   86 (194)
                      ..+++++++|++|+.+    ..||||+|.|.+..                 .                     +.....+
T Consensus         1 ~tl~V~Visaq~L~~~----~~dPyV~V~l~g~~-----------------~---------------------D~~~~~~   38 (122)
T d2zkmx2           1 TTLSITVISGQFLSER----SVRTYVEVELFGLP-----------------G---------------------DPKRRYR   38 (122)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEECCT-----------------T---------------------SCCCCEE
T ss_pred             CEEEEEEEEeeCCCCC----CCCcEEEEEEECcC-----------------C---------------------CCCccEE
Confidence            3689999999999765    37899999987420                 0                     0000112


Q ss_pred             eeceeecCCCCCcccce-EEE-EecCCCCCCceEEEEEEecCCCCCCceeEEEEeCCCCCCcch
Q psy6105          87 KRTSVKKNSLNPFYNEA-LLF-DVPASNVNDVSLIIKVIDYDRIGSDELMGCTAIGSSFIGIGR  148 (194)
Q Consensus        87 ~kT~~~~~t~nP~~~e~-f~f-~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~  148 (194)
                      .+|.+..+++||+|||. |.| .+...++  +.|.+.|||++    +++||++.++++.+.+|+
T Consensus        39 t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~D~d----~~~lG~~~ipl~~l~~Gy   96 (122)
T d2zkmx2          39 TKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVMEEG----NKFLGHRIIPINALNSGY   96 (122)
T ss_dssp             CCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEEETT----TEEEEEEEEEGGGBCCEE
T ss_pred             EEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEEECCC----CCEEEEEEEEcccCcCCc
Confidence            23333456788888765 433 3443343  48999999975    789999999999775443

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=8.8e-08  Score=64.69  Aligned_cols=10  Identities=20%  Similarity=0.551  Sum_probs=8.7

Q ss_pred             CCceeEEEEE
Q psy6105          69 ANPYVKVYLV   78 (194)
Q Consensus        69 ~dpyv~v~l~   78 (194)
                      +||||+|.+.
T Consensus        24 ~dPY~~v~l~   33 (123)
T d1bdya_          24 SQPFCAVKMK   33 (123)
T ss_dssp             CCCEEEEEEE
T ss_pred             CCCEEEEEEc
Confidence            7899999984

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00032  Score=46.33  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=13.1

Q ss_pred             eeeeEEEecC--CCceeEEEEEc
Q psy6105          59 YNEALLFDVP--ANPYVKVYLVC   79 (194)
Q Consensus        59 w~e~f~f~~~--~dpyv~v~l~~   79 (194)
                      |||+|.|.+.  ....+.+.+.+
T Consensus        56 wne~f~f~i~~~~~~~L~v~V~d   78 (126)
T d1rlwa_          56 WNETFEFILDPNQENVLEITLMD   78 (126)
T ss_dssp             EEEEEEEEECTTSCCEEEEEEEE
T ss_pred             eceeeeecccCcccCcEEEEEEE
Confidence            8888888765  23345555543

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00027  Score=47.49  Aligned_cols=14  Identities=21%  Similarity=0.192  Sum_probs=8.9

Q ss_pred             CCCceeEEEEeCCC
Q psy6105         129 GSDELMGCTAIGSS  142 (194)
Q Consensus       129 ~~~~~iG~~~i~l~  142 (194)
                      +.....|++.+.|+
T Consensus       115 ~~~~~~G~L~v~l~  128 (133)
T d2nq3a1         115 EPTETIGDLSICLD  128 (133)
T ss_dssp             CTTSEEEEEEEEEE
T ss_pred             CCceEEEEEEEEEe
Confidence            34556787777654

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.00047  Score=46.37  Aligned_cols=31  Identities=35%  Similarity=0.607  Sum_probs=23.2

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      |++++++.||.|||+|.|.++.    +..+.+.+.
T Consensus        56 T~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~   90 (138)
T d1w15a_          56 THVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL   90 (138)
T ss_dssp             CCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred             ceeECCCCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence            5688899999999999999863    233555554

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.00015  Score=48.47  Aligned_cols=31  Identities=32%  Similarity=0.622  Sum_probs=23.2

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      |+++++|.||.|||+|.|.+..    +..+.+.+.
T Consensus        57 T~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~   91 (130)
T d1dqva1          57 TKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY   91 (130)
T ss_dssp             CCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred             ceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence            5778899999999999998762    234555554

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.00018  Score=48.18  Aligned_cols=18  Identities=44%  Similarity=0.630  Sum_probs=15.7

Q ss_pred             ecCCCCceeeeeEEEecC
Q psy6105          51 KKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        51 ~~~t~nP~w~e~f~f~~~   68 (194)
                      +++|+||.|||.|.|.+.
T Consensus        59 ~~~t~nP~wne~f~f~v~   76 (132)
T d1a25a_          59 IKCSLNPEWNETFRFQLK   76 (132)
T ss_dssp             CSSCSSCEEEEEEEEECC
T ss_pred             ecCCCCCccceEEEEEeE
Confidence            457899999999999876

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00039  Score=46.00  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             CCCCceeeeeEEEecC-CCceeEEEEE
Q psy6105          53 NSLNPFYNEALLFDVP-ANPYVKVYLV   78 (194)
Q Consensus        53 ~t~nP~w~e~f~f~~~-~dpyv~v~l~   78 (194)
                      +|+||.|||.|.|.+. ....+.+.+.
T Consensus        47 ~t~nP~wne~f~f~v~~~~~~L~i~V~   73 (126)
T d2ep6a1          47 KNLNPEWNKVFTFPIKDIHDVLEVTVF   73 (126)
T ss_dssp             SCSSCCCCEEEEEEESCTTCEEEEEEE
T ss_pred             CceeEEEEEEEEEEEeccCceeEEEEE
Confidence            3689999999999986 3445556654

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.00026  Score=47.53  Aligned_cols=31  Identities=29%  Similarity=0.592  Sum_probs=23.8

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      |+++++|.||.|||.|.|.++.    +..+.+.+.
T Consensus        56 T~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~   90 (137)
T d2cm5a1          56 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW   90 (137)
T ss_dssp             CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             CEeEcCCCCCccceEEEEEeEHHHccccEEEEEee
Confidence            6788999999999999999872    234555554

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.79  E-value=0.00038  Score=47.98  Aligned_cols=31  Identities=48%  Similarity=0.838  Sum_probs=23.6

Q ss_pred             eEEecCCCCceeeeeEEEecCC----CceeEEEEE
Q psy6105          48 TSVKKNSLNPFYNEALLFDVPA----NPYVKVYLV   78 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~   78 (194)
                      |++++++.||+|||+|.|.++.    +..+.+.+.
T Consensus        66 T~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~  100 (157)
T d1uowa_          66 TTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVL  100 (157)
T ss_dssp             CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             cccccCCCCcccCCeEEEEecHHHcCccEEEEEEc
Confidence            5678899999999999999872    334555554

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.0007  Score=45.79  Aligned_cols=31  Identities=29%  Similarity=0.554  Sum_probs=23.2

Q ss_pred             EEecCCCCceeeeeEEEecC----CCceeEEEEEc
Q psy6105          49 SVKKNSLNPFYNEALLFDVP----ANPYVKVYLVC   79 (194)
Q Consensus        49 ~~~~~t~nP~w~e~f~f~~~----~dpyv~v~l~~   79 (194)
                      +++++|.||.|||.|.|.+.    .+..+.+.+.+
T Consensus        74 ~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d  108 (143)
T d1rsya_          74 KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD  108 (143)
T ss_dssp             CCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred             EEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence            36778999999999999876    33456666543

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.51  E-value=0.0012  Score=43.86  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=21.2

Q ss_pred             eEEe-cCCCCceeeeeEEEecC--CCceeEEEEE
Q psy6105          48 TSVK-KNSLNPFYNEALLFDVP--ANPYVKVYLV   78 (194)
Q Consensus        48 T~~~-~~t~nP~w~e~f~f~~~--~dpyv~v~l~   78 (194)
                      |+++ ++++||.|||+|.|.+.  ...++.+.+.
T Consensus        47 T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~   80 (131)
T d1qasa2          47 TAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE   80 (131)
T ss_dssp             CCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             EEEEecccCCceEEEEEEEEEEcchhceEEEEEE
Confidence            3444 45689999999999765  3345555554

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=96.37  E-value=0.0012  Score=44.33  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=17.1

Q ss_pred             CCceeeeeEEEecCCCceeEEEEE
Q psy6105          55 LNPFYNEALLFDVPANPYVKVYLV   78 (194)
Q Consensus        55 ~nP~w~e~f~f~~~~dpyv~v~l~   78 (194)
                      .||.|||.|.|.+...-.+.+.+.
T Consensus        61 ~~P~Wne~f~f~v~~~~~l~i~V~   84 (136)
T d1gmia_          61 NSPAWHDEFVTDVCNGRKIELAVF   84 (136)
T ss_dssp             SSCEEEEEEEEEEEEECEEEEEEE
T ss_pred             CCccCccEEEEEEecCCceEEEEE
Confidence            699999999998863334444443

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00073  Score=45.45  Aligned_cols=20  Identities=30%  Similarity=0.745  Sum_probs=16.4

Q ss_pred             EEecCCCCceeeeeEEEe-cC
Q psy6105          49 SVKKNSLNPFYNEALLFD-VP   68 (194)
Q Consensus        49 ~~~~~t~nP~w~e~f~f~-~~   68 (194)
                      +++++++||.|||+|.|. ++
T Consensus        63 ~v~~~t~nP~wne~f~f~~~~   83 (138)
T d1ugka_          63 RVLRKTLDPAFDETFTFYGIP   83 (138)
T ss_dssp             CCCSSCSSCEEEEEEEEECCC
T ss_pred             eeEeCCCCCceeeEEEEeeeC
Confidence            356789999999999996 44

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00073  Score=44.56  Aligned_cols=31  Identities=19%  Similarity=0.405  Sum_probs=21.6

Q ss_pred             EEecCCCCceeeeeEEEe-cC----CCceeEEEEEc
Q psy6105          49 SVKKNSLNPFYNEALLFD-VP----ANPYVKVYLVC   79 (194)
Q Consensus        49 ~~~~~t~nP~w~e~f~f~-~~----~dpyv~v~l~~   79 (194)
                      +++++|+||.|||+|.|. +.    .+..+.+.+.+
T Consensus        56 ~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d   91 (125)
T d2bwqa1          56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   91 (125)
T ss_dssp             CCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence            456789999999999996 44    23345565543

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0013  Score=44.21  Aligned_cols=70  Identities=16%  Similarity=0.150  Sum_probs=55.4

Q ss_pred             ceeEEEeeccCCCCCCCCCCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEecCC----CceeEEEEEc
Q psy6105           6 SRSFRADNYCRPTIGNRSIPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDVPA----NPYVKVYLVC   79 (194)
Q Consensus         6 ~~~~r~~~~~a~~l~~~d~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~----dpyv~v~l~~   79 (194)
                      ...|.+.++.|++|.   ..|.+||||+++|.++.+ ...++|++++++.||+|||.|.|.+..    ...+.+.+.+
T Consensus        25 ~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~-~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d   98 (138)
T d1wfma_          25 KAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT   98 (138)
T ss_dssp             TTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCC-ccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEee
Confidence            346889999999984   467899999999998633 446889999999999999999999863    2345555543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.00044  Score=46.92  Aligned_cols=21  Identities=76%  Similarity=1.134  Sum_probs=19.0

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |+++++|+||.|||.|.|.+.
T Consensus        61 T~~~~~t~~P~wne~f~F~v~   81 (145)
T d1dqva2          61 TSIKKNTLNPTYNEALVFDVA   81 (145)
T ss_dssp             CCCCCSCSSCEEEECCCCCCC
T ss_pred             CEEEeCCCCceecceEEEEEe
Confidence            677889999999999999876

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.58  E-value=0.0022  Score=42.71  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=16.3

Q ss_pred             CCceeeeeEEEecCC-CceeEEEEE
Q psy6105          55 LNPFYNEALLFDVPA-NPYVKVYLV   78 (194)
Q Consensus        55 ~nP~w~e~f~f~~~~-dpyv~v~l~   78 (194)
                      +||.|||.|.|.+.. ..-+.+.+.
T Consensus        54 ~nP~Wne~f~f~v~~~~~~L~v~V~   78 (136)
T d1wfja_          54 TTPEWNETFIFTVSEGTTELKAKIF   78 (136)
T ss_dssp             SSCEEEEEEEEEEESSCCEEEEEEC
T ss_pred             CcEEEeeEEEEEEcCccceEEEEEE
Confidence            489999999998773 222444443

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.22  E-value=0.00071  Score=45.51  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=40.6

Q ss_pred             eeEEEeeccCCCCCCC-C-------CCCCCCcEEEEEEEcCCeEeEEEeeEEecCCCCceeeeeEEEec-C----CCcee
Q psy6105           7 RSFRADNYCRPTIGNR-S-------IPSVADPYVKVYLVCEGKRIRKKRTSVKKNSLNPFYNEALLFDV-P----ANPYV   73 (194)
Q Consensus         7 ~~~r~~~~~a~~l~~~-d-------~~g~~dpyv~v~l~~~~~~~~~~~T~~~~~t~nP~w~e~f~f~~-~----~dpyv   73 (194)
                      .-++|++|.+.+.... |       ..+....  .  .........+.+|+++++|+||.|||.|.|.. .    .+..+
T Consensus        23 ~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~--~--~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L   98 (142)
T d1rh8a_          23 HILQARNLVPRDNNGYSDPFVKVYLLPGRGQV--M--VVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL   98 (142)
T ss_dssp             EEEEEESCCCCSSSSCSCCEEEEEETTSSCCC--E--ECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEE
T ss_pred             EEEEeECCCCcCCCCCCCcCEEEEEecCcccc--c--ccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEE
Confidence            3578888887765433 2       1111111  1  11111123467899999999999999999973 3    33456


Q ss_pred             EEEEE
Q psy6105          74 KVYLV   78 (194)
Q Consensus        74 ~v~l~   78 (194)
                      .+.+.
T Consensus        99 ~i~V~  103 (142)
T d1rh8a_          99 EVTVW  103 (142)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.01  E-value=0.013  Score=38.71  Aligned_cols=20  Identities=15%  Similarity=0.479  Sum_probs=15.4

Q ss_pred             eEEecCCCCceeeeeEEEecC
Q psy6105          48 TSVKKNSLNPFYNEALLFDVP   68 (194)
Q Consensus        48 T~~~~~t~nP~w~e~f~f~~~   68 (194)
                      |.+++ +.||.|||.|.|.+.
T Consensus        35 T~~~k-~~nP~Wne~f~f~v~   54 (128)
T d2cjta1          35 TIAVR-GSQPSWEQDFMFEIN   54 (128)
T ss_dssp             CCCEE-SSSCEEEEEEEEEEC
T ss_pred             EEEec-CCCCeEEEEEEEeec
Confidence            34444 459999999999875

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.041  Score=35.71  Aligned_cols=35  Identities=23%  Similarity=0.471  Sum_probs=21.1

Q ss_pred             EEeeEEecCCCCceeeee-EEEe-cC--CCceeEEEEEc
Q psy6105          45 KKRTSVKKNSLNPFYNEA-LLFD-VP--ANPYVKVYLVC   79 (194)
Q Consensus        45 ~~~T~~~~~t~nP~w~e~-f~f~-~~--~dpyv~v~l~~   79 (194)
                      +.++.+..+++||.|||. |.|. +.  .-.++.+.+.+
T Consensus        38 ~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D   76 (122)
T d2zkmx2          38 RTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME   76 (122)
T ss_dssp             ECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEE
T ss_pred             EEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEEC
Confidence            344445678999999976 4443 32  22356666654