Psyllid ID: psy6107

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPLFRF
Secondary Structure (PSIPRED)
cEEEEEEHHEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHEEEEcccccccccccccHHHHHHHHHHHHHHHHHEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEccccHHHEEcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHEEEEEEEHHccccccccccHHHHHHHHHHHHHHHHHHHccccHccc
Coil and Loop (DISEMBL)
MVYYFIRFIAASDKLWFMLEMYSfvdyftippsfvsIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLlensgdpfefnnpqqlsyWTCVYFLIVTMStvgygdvycqtILGRTFLVFFLLVglvsdpfplfrf
Flexible Loop (DISEMBL)
MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVsdpfplfrf
Low Complexity Region (SEG)
MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTflvffllvglvSDPFPLFRF
Disordered region (IsUnstruct)
*VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPLF**
Disordered Region (DISOPRED)
MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPLFRF
Disordered Region (DISEMBL)
MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPLFRF
Disordered Region (DISPRO)
MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPLFRF
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPLFRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q03720	1200	Calcium-activated potassi	yes	N/A	0.944	0.126	0.934	4e-80
Q95V25	1140	Calcium-activated potassi	yes	N/A	0.944	0.133	0.718	1e-60
Q8AYS8	1137	Calcium-activated potassi	yes	N/A	0.944	0.133	0.692	1e-57
Q08460	1209	Calcium-activated potassi	yes	N/A	0.944	0.125	0.686	4e-57
Q62976	1209	Calcium-activated potassi	yes	N/A	0.944	0.125	0.686	4e-57
Q12791	1236	Calcium-activated potassi	no	N/A	0.944	0.122	0.686	4e-57
Q9BG98	1179	Calcium-activated potassi	yes	N/A	0.944	0.128	0.686	4e-57
O18867	1151	Calcium-activated potassi	yes	N/A	0.944	0.132	0.686	4e-57
O18866	1152	Calcium-activated potassi	yes	N/A	0.944	0.131	0.686	4e-57
Q28204	1166	Calcium-activated potassi	yes	N/A	0.944	0.130	0.686	4e-57

>sp|Q03720|SLO_DROME Calcium-activated potassium channel slowpoke OS=Drosophila melanogaster GN=slo PE=1 SV=3

 Score =  296 bits (758), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/152 (93%), Positives = 148/152 (97%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 176 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 235

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLN+LKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDP +FNN  +LSYWTCVYFL
Sbjct: 236 LQYLNVLKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPLDFNNAHRLSYWTCVYFL 295

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYC+T+LGRTFLVFFLLVGL 
Sbjct: 296 IVTMSTVGYGDVYCETVLGRTFLVFFLLVGLA 327

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Kinetics are determined by alternative splicing, phosphorylation status and its combination interaction with Slob and 14-3-3-zeta. While the interaction with Slob1 alone increases its activity, its interaction with both Slob1 and 14-3-3-zeta decreases its activity.
Drosophila melanogaster (taxid: 7227)

>sp|Q95V25|SLO1_CAEEL Calcium-activated potassium channel slo-1 OS=Caenorhabditis elegans GN=slo-1 PE=1 SV=2

 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 135/153 (88%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct: 190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct: 250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           ++VTMSTVGYGD+YC T+ GR F++FF+L GL 
Sbjct: 310 VLVTMSTVGYGDIYCTTLCGRLFMIFFILFGLA 342

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a central role in synapses by regulating neurotransmitter release.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8AYS8|KCMA1_CHICK Calcium-activated potassium channel subunit alpha-1 OS=Gallus gallus GN=KCNMA1 PE=1 SV=2

 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 185 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 244

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L SIFIS WLTAAG IHL+ENSGDP+E F N QQL+YW CVY 
Sbjct: 245 LQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNNQQLTYWECVYL 304

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 305 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 337

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Gallus gallus (taxid: 9031)

>sp|Q08460|KCMA1_MOUSE Calcium-activated potassium channel subunit alpha-1 OS=Mus musculus GN=Kcnma1 PE=1 SV=2

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 226 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 285

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L+SIFIS WLTAAG IHL+ENSGDP+E F N Q L+YW CVY 
Sbjct: 286 LQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQNNQALTYWECVYL 345

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 346 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 378

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Mus musculus (taxid: 10090)

>sp|Q62976|KCMA1_RAT Calcium-activated potassium channel subunit alpha-1 OS=Rattus norvegicus GN=Kcnma1 PE=1 SV=3

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 227 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 286

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L+SIFIS WLTAAG IHL+ENSGDP+E F N Q L+YW CVY 
Sbjct: 287 LQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQNNQALTYWECVYL 346

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 347 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 379

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Rattus norvegicus (taxid: 10116)

>sp|Q12791|KCMA1_HUMAN Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 226 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 285

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L+SIFIS WLTAAG IHL+ENSGDP+E F N Q L+YW CVY 
Sbjct: 286 LQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQNNQALTYWECVYL 345

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 346 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 378

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Homo sapiens (taxid: 9606)

>sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit alpha-1 OS=Oryctolagus cuniculus GN=KCNMA1 PE=2 SV=1

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 227 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 286

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L+SIFIS WLTAAG IHL+ENSGDP+E F N Q L+YW CVY 
Sbjct: 287 LQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQNNQALTYWECVYL 346

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 347 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 379

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Oryctolagus cuniculus (taxid: 9986)

>sp|O18867|KCMA1_MACMU Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Macaca mulatta GN=KCNMA1 PE=2 SV=1

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 199 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 258

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L+SIFIS WLTAAG IHL+ENSGDP+E F N Q L+YW CVY 
Sbjct: 259 LQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQNNQALTYWECVYL 318

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 319 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 351

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Macaca mulatta (taxid: 9544)

>sp|O18866|KCMA1_PIG Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Sus scrofa GN=KCNMA1 PE=2 SV=2

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 200 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 259

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L+SIFIS WLTAAG IHL+ENSGDP+E F N Q L+YW CVY 
Sbjct: 260 LQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQNNQALTYWECVYL 319

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 320 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 352

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Sus scrofa (taxid: 9823)

>sp|Q28204|KCMA1_BOVIN Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus GN=KCNMA1 PE=1 SV=2

 Score =  219 bits (559), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/153 (68%), Positives = 130/153 (84%), Gaps = 1/153 (0%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           ++Y+ +RFIAA+DKLWF LE+ S VD+FT+PP FVS+YL+R+W+GLRFLRALRL+   +I
Sbjct: 214 LLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEI 273

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
           LQ+LNILKTS+SI+L  L+SIFIS WLTAAG IHL+ENSGDP+E F N Q L+YW CVY 
Sbjct: 274 LQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPWENFQNNQALTYWECVYL 333

Query: 120 LIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           L+VTMSTVGYGDVY +T LGR F+VFF+L GL 
Sbjct: 334 LMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLA 366

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
213972570	1153	slowpoke [Nasonia vitripennis]	0.944	0.131	0.980	3e-81
380027780	1127	PREDICTED: calcium-activated potassium c	0.944	0.134	0.973	3e-81
347970447	1154	AGAP003709-PF [Anopheles gambiae str. PE	0.944	0.131	0.967	3e-81
347970449	1154	AGAP003709-PD [Anopheles gambiae str. PE	0.944	0.131	0.967	3e-81
340718576	1168	PREDICTED: calcium-activated potassium c	0.944	0.130	0.973	4e-81
328776884	1152	PREDICTED: calcium-activated potassium c	0.944	0.131	0.973	4e-81
380027784	1114	PREDICTED: calcium-activated potassium c	0.944	0.136	0.973	4e-81
350401913	1152	PREDICTED: calcium-activated potassium c	0.944	0.131	0.973	4e-81
380027782	1136	PREDICTED: calcium-activated potassium c	0.944	0.133	0.973	4e-81
347970443	1154	AGAP003709-PB [Anopheles gambiae str. PE	0.944	0.131	0.967	4e-81

>gi|213972570|ref|NP_001135433.1| slowpoke [Nasonia vitripennis]

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/152 (98%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 148 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 207

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF NPQQLSYWTCVYFL
Sbjct: 208 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFKNPQQLSYWTCVYFL 267

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 
Sbjct: 268 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLA 299

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027780|ref|XP_003697596.1| PREDICTED: calcium-activated potassium channel slowpoke-like isoform 1 [Apis florea]

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/152 (97%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 148 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 207

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF NPQQLSYWTCVYFL
Sbjct: 208 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFTNPQQLSYWTCVYFL 267

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYCQT+LGRTFLVFFLLVGL 
Sbjct: 268 IVTMSTVGYGDVYCQTVLGRTFLVFFLLVGLA 299

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970447|ref|XP_003436579.1| AGAP003709-PF [Anopheles gambiae str. PEST] gi|333468940|gb|EGK97123.1| AGAP003709-PF [Anopheles gambiae str. PEST]

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 147/152 (96%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 157 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 216

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDP EFNNPQQLSYWTCVYFL
Sbjct: 217 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPLEFNNPQQLSYWTCVYFL 276

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYC+T+LGRTFLVFFLLVGL 
Sbjct: 277 IVTMSTVGYGDVYCETVLGRTFLVFFLLVGLA 308

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970449|ref|XP_003436580.1| AGAP003709-PD [Anopheles gambiae str. PEST] gi|333468938|gb|EGK97121.1| AGAP003709-PD [Anopheles gambiae str. PEST]

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 147/152 (96%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 157 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 216

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDP EFNNPQQLSYWTCVYFL
Sbjct: 217 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPLEFNNPQQLSYWTCVYFL 276

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYC+T+LGRTFLVFFLLVGL 
Sbjct: 277 IVTMSTVGYGDVYCETVLGRTFLVFFLLVGLA 308

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718576|ref|XP_003397741.1| PREDICTED: calcium-activated potassium channel slowpoke-like [Bombus terrestris]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/152 (97%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 164 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 223

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF NPQQLSYWTCVYFL
Sbjct: 224 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFTNPQQLSYWTCVYFL 283

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYCQT+LGRTFLVFFLLVGL 
Sbjct: 284 IVTMSTVGYGDVYCQTVLGRTFLVFFLLVGLA 315

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776884|ref|XP_397429.3| PREDICTED: calcium-activated potassium channel slowpoke-like [Apis mellifera]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/152 (97%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 148 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 207

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF NPQQLSYWTCVYFL
Sbjct: 208 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFTNPQQLSYWTCVYFL 267

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYCQT+LGRTFLVFFLLVGL 
Sbjct: 268 IVTMSTVGYGDVYCQTVLGRTFLVFFLLVGLA 299

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027784|ref|XP_003697598.1| PREDICTED: calcium-activated potassium channel slowpoke-like isoform 3 [Apis florea]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/152 (97%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 148 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 207

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF NPQQLSYWTCVYFL
Sbjct: 208 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFTNPQQLSYWTCVYFL 267

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYCQT+LGRTFLVFFLLVGL 
Sbjct: 268 IVTMSTVGYGDVYCQTVLGRTFLVFFLLVGLA 299

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401913|ref|XP_003486304.1| PREDICTED: calcium-activated potassium channel slowpoke-like isoform 2 [Bombus impatiens]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/152 (97%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 148 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 207

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF NPQQLSYWTCVYFL
Sbjct: 208 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFTNPQQLSYWTCVYFL 267

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYCQT+LGRTFLVFFLLVGL 
Sbjct: 268 IVTMSTVGYGDVYCQTVLGRTFLVFFLLVGLA 299

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027782|ref|XP_003697597.1| PREDICTED: calcium-activated potassium channel slowpoke-like isoform 2 [Apis florea]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/152 (97%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 148 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 207

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF NPQQLSYWTCVYFL
Sbjct: 208 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFTNPQQLSYWTCVYFL 267

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYCQT+LGRTFLVFFLLVGL 
Sbjct: 268 IVTMSTVGYGDVYCQTVLGRTFLVFFLLVGLA 299

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970443|ref|XP_003436577.1| AGAP003709-PB [Anopheles gambiae str. PEST] gi|333468936|gb|EGK97119.1| AGAP003709-PB [Anopheles gambiae str. PEST]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 147/152 (96%), Positives = 150/152 (98%)

Query: 1   MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
           MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct: 157 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 216

Query: 61  LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
           LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDP EFNNPQQLSYWTCVYFL
Sbjct: 217 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPLEFNNPQQLSYWTCVYFL 276

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           IVTMSTVGYGDVYC+T+LGRTFLVFFLLVGL 
Sbjct: 277 IVTMSTVGYGDVYCETVLGRTFLVFFLLVGLA 308

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
FB|FBgn0003429	1200	slo "slowpoke" [Drosophila mel	0.875	0.117	0.936	2.2e-68
UNIPROTKB|H7BRM5	1118	slo-1 "Protein SLO-1, isoform	0.869	0.125	0.737	2.2e-53
UNIPROTKB|H7BRM7	1131	slo-1 "SLO-1" [Caenorhabditis	0.869	0.123	0.737	2.3e-53
UNIPROTKB|H8ESD8	1138	slo-1 "Protein SLO-1, isoform	0.869	0.123	0.737	2.3e-53
UNIPROTKB|H8ESE4	1138	slo-1 "Protein SLO-1, isoform	0.869	0.123	0.737	2.3e-53
UNIPROTKB|H8ESE5	1140	slo-1 "Protein SLO-1, isoform	0.869	0.122	0.737	2.3e-53
UNIPROTKB|Q95V25	1140	slo-1 "Calcium-activated potas	0.869	0.122	0.737	2.3e-53
UNIPROTKB|H8ESD6	1146	slo-1 "Protein SLO-1, isoform	0.869	0.122	0.737	2.4e-53
UNIPROTKB|H7BRM4	1153	slo-1 "Protein SLO-1, isoform	0.869	0.121	0.737	2.4e-53
UNIPROTKB|H8ESE3	1153	slo-1 "Protein SLO-1, isoform	0.869	0.121	0.737	2.4e-53

FB|FBgn0003429 slo "slowpoke" [Drosophila melanogaster (taxid:7227)]

 Score = 702 (252.2 bits), Expect = 2.2e-68, P = 2.2e-68
 Identities = 132/141 (93%), Positives = 138/141 (97%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             MVY+FIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI
Sbjct:   176 MVYFFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 235

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
             LQYLN+LKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDP +FNN  +LSYWTCVYFL
Sbjct:   236 LQYLNVLKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPLDFNNAHRLSYWTCVYFL 295

Query:   121 IVTMSTVGYGDVYCQTILGRT 141
             IVTMSTVGYGDVYC+T+LGRT
Sbjct:   296 IVTMSTVGYGDVYCETVLGRT 316

GO:0016020 "membrane" evidence=IDA

GO:0015269 "calcium-activated potassium channel activity" evidence=NAS;IDA

GO:0006813 "potassium ion transport" evidence=NAS;IDA

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=NAS;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=NAS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0042493 "response to drug" evidence=IMP

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0048512 "circadian behavior" evidence=IMP

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H7BRM5 slo-1 "Protein SLO-1, isoform h" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.2e-53, P = 2.2e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H7BRM7 slo-1 "SLO-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.3e-53, P = 2.3e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESD8 slo-1 "Protein SLO-1, isoform k" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.3e-53, P = 2.3e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESE4 slo-1 "Protein SLO-1, isoform g" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.3e-53, P = 2.3e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESE5 slo-1 "Protein SLO-1, isoform f" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.3e-53, P = 2.3e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|Q95V25 slo-1 "Calcium-activated potassium channel slo-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.3e-53, P = 2.3e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESD6 slo-1 "Protein SLO-1, isoform m" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   205 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 264

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   265 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 324

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   325 VLVTMSTVGYGDIYCTTLCGR 345

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H7BRM4 slo-1 "Protein SLO-1, isoform e" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESE3 slo-1 "Protein SLO-1, isoform j" [Caenorhabditis elegans (taxid:6239)]

 Score = 562 (202.9 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 104/141 (73%), Positives = 126/141 (89%)

Query:     1 MVYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDI 60
             +VY+FIRFIAASDK+WF+LEMYS++D+FTIPPSFV+IYL R W+G RFLRALRLMTVPDI
Sbjct:   190 LVYFFIRFIAASDKVWFLLEMYSWIDFFTIPPSFVAIYLQRNWLGFRFLRALRLMTVPDI 249

Query:    61 LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYF 119
             LQYLNILKTSSSIRL QLV+IF++V LT AG++HLLENSGD F+ F NP +++Y   VYF
Sbjct:   250 LQYLNILKTSSSIRLTQLVTIFVAVCLTGAGLVHLLENSGDFFKGFINPHRITYADSVYF 309

Query:   120 LIVTMSTVGYGDVYCQTILGR 140
             ++VTMSTVGYGD+YC T+ GR
Sbjct:   310 VLVTMSTVGYGDIYCTTLCGR 330

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28265	KCMA1_CANFA	No assigned EC number	0.6666	0.9440	0.1311	yes	N/A
Q8AYS8	KCMA1_CHICK	No assigned EC number	0.6928	0.9440	0.1336	yes	N/A
Q28204	KCMA1_BOVIN	No assigned EC number	0.6862	0.9440	0.1303	yes	N/A
Q03720	SLO_DROME	No assigned EC number	0.9342	0.9440	0.1266	yes	N/A
Q62976	KCMA1_RAT	No assigned EC number	0.6862	0.9440	0.1257	yes	N/A
Q9BG98	KCMA1_RABIT	No assigned EC number	0.6862	0.9440	0.1289	yes	N/A
Q95V25	SLO1_CAEEL	No assigned EC number	0.7189	0.9440	0.1333	yes	N/A
O18866	KCMA1_PIG	No assigned EC number	0.6862	0.9440	0.1319	yes	N/A
O18867	KCMA1_MACMU	No assigned EC number	0.6862	0.9440	0.1320	yes	N/A
Q08460	KCMA1_MOUSE	No assigned EC number	0.6862	0.9440	0.1257	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	161
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	3e-07
PRK10537	393	PRK10537, PRK10537, voltage-gated potassium channe	1e-05
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	2e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-04

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 81  IFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
           I + + L    + + LE               +   +YF  VT++T+GYGD+   T  GR
Sbjct: 1   ILLLLVLIFGTVYYSLEE--------EGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGR 52

Query: 141 TFLVFFLLVGL 151
            F + ++L+G+
Sbjct: 53  LFTIIYILIGI 63

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 100 GDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
           GD F   +P   S  T  YF IVTMSTVGYGD+   +   R F +  +++G+
Sbjct: 159 GDGF---SPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGI 207

Length = 393

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 23/172 (13%)

Query: 4   YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQY 63
             ++FIA   K  +    ++ +D+  + PS VS+ L         LR LRL+ +  +L+ 
Sbjct: 14  MLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLGEDSGLLRVLRLLRLLRLLRL 73

Query: 64  LNILKT---------SSSIRLAQLVSIFISVWLTAA--------GIIHLLENSGDPFEFN 106
           L               S   L  L+ + + +    A        G +    +  +     
Sbjct: 74  LRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPING 133

Query: 107 NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRT------FLVFFLLVGLV 152
           N    SY   + +L  T++T G+GDV   T++  T      F++F +L G++
Sbjct: 134 NSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVPGTVLGKIFFVIFIILGGVL 185

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 26/156 (16%)

Query: 16  WFMLEMYSFVDYFTIP----PSFVS--IYLDRTWIGLRFLRALRLMTVPDILQYL--NIL 67
           WF++++ S     TIP       ++  + L+ ++  L  LR  RL  V  +   L  +I 
Sbjct: 140 WFLMDVAS-----TIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIR 194

Query: 68  KTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFE--------FNNPQQLSYW----T 115
            +   IR A+L+S+ + + +  AG ++ L     P +          N ++ S W    +
Sbjct: 195 FSYFWIRCARLLSVTLFL-VHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYIS 253

Query: 116 CVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
            +Y+ I TM+TVGYGD++    +   F++F++L  L
Sbjct: 254 AIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNL 289

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG3713|consensus	477		100.0
KOG1545|consensus	507		99.97
KOG4390|consensus	632		99.93
KOG1419|consensus	654		99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG1420|consensus	1103		99.91
KOG0498|consensus	727		99.84
KOG0501|consensus	971		99.81
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.63
PF00520	200	Ion_trans: Ion transport protein calcium channel s	99.62
PRK10537	393	voltage-gated potassium channel; Provisional	99.55
KOG0500|consensus	536		99.45
KOG0499|consensus	815		99.31
KOG1418|consensus	433		98.85
KOG3684|consensus	489		98.82
KOG4404|consensus	350		98.77
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	98.7
KOG3193|consensus	1087		98.59
KOG4404|consensus	350		98.53
KOG1418|consensus	433		98.01
KOG2301|consensus	1592		97.36
KOG3827|consensus	400		97.26
PLN03223	1634	Polycystin cation channel protein; Provisional	96.98
KOG2302|consensus	1956		96.72
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	96.65
KOG2301|consensus	1592		96.55
KOG2302|consensus	1956		96.25
TIGR00870	743	trp transient-receptor-potential calcium channel p	94.81
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	94.03
KOG3599|consensus	798		93.26
TIGR00933	390	2a38 potassium uptake protein, TrkH family. The pr	92.3
PRK05482	559	potassium-transporting ATPase subunit A; Provision	87.8
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	85.62
PF07077	180	DUF1345: Protein of unknown function (DUF1345); In	84.24
KOG3609|consensus	822		80.47
PF02386	354	TrkH: Cation transport protein; InterPro: IPR00344	80.01

>KOG3713|consensus

Probab=100.00  E-value=7.2e-37  Score=247.28  Aligned_cols=153  Identities=26%  Similarity=0.464  Sum_probs=120.5

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhch-----------hhHHHHHHHHHHHHHHHHHH---HHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTW-----------IGLRFLRALRLMTVPDILQY---LNIL   67 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~-----------~~~~~lr~lRl~rl~r~~~~---~~~l   67 (161)
                      +||++|+..+|+|.+|+|++.|+||+++++|||+++......           ..+|++|++|++|++|+.|.   ++.+
T Consensus       255 ~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~l  334 (477)
T KOG3713|consen  255 FEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTL  334 (477)
T ss_pred             HHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            699999999999999999999999999999999987543211           12344444444444444443   3443


Q ss_pred             HH--hHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHH
Q psy6107          68 KT--SSSIRLAQLVSIFISV-WLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLV  144 (161)
Q Consensus        68 ~~--~~~~~~~~l~~~~~~~-~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~  144 (161)
                      ..  +.+.+...++.+++++ +.++|.+.|++|++.+.+.|+++|.     ++||+++|||||||||++|+|..||+++.
T Consensus       335 g~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa-----~~WWaiVTMTTVGYGDm~P~T~~Gklvas  409 (477)
T KOG3713|consen  335 GLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPA-----GFWWAVVTMTTVGYGDMVPVTVLGKLVAS  409 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc-----hhheeeEEEeeecccCccccccchHHHHH
Confidence            33  2344455555555555 5689999999999998888999883     77899999999999999999999999999


Q ss_pred             HHHHHhhhhcccccc
Q psy6107         145 FFLLVGLVSDPFPLF  159 (161)
Q Consensus       145 ~~~l~g~~~~a~~i~  159 (161)
                      .+++.|++++|+||.
T Consensus       410 ~cil~GVLvlAlPIt  424 (477)
T KOG3713|consen  410 LCILCGVLVLALPIT  424 (477)
T ss_pred             HHHHHhHHHhhcchH
Confidence            999999999999984

>KOG1545|consensus

Probab=99.97  E-value=2.8e-32  Score=213.46  Aligned_cols=152  Identities=25%  Similarity=0.436  Sum_probs=123.9

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhh-----------chhhHHHHHHHHHHHHHHHHHH------H
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDR-----------TWIGLRFLRALRLMTVPDILQY------L   64 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~-----------~~~~~~~lr~lRl~rl~r~~~~------~   64 (161)
                      +|+++|+++||+|-.|+++-.|+||+++++|+++.+....           +..++.++|++|+.|++|++|+      +
T Consensus       268 fEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGL  347 (507)
T KOG1545|consen  268 FELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGL  347 (507)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchH
Confidence            6899999999999999999999999999999999876431           1224666666666666666654      4


Q ss_pred             HHHHH--hHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhH
Q psy6107          65 NILKT--SSSIRLAQLVSIFISV-WLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRT  141 (161)
Q Consensus        65 ~~l~~--~~~~~~~~l~~~~~~~-~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri  141 (161)
                      +.+.+  +.+++...+++.++.+ +++++..+|+.|.+.+...|++++     ||+||+++|||||||||++|.|..||+
T Consensus       348 QILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIP-----daFWwavVTMTTVGYGDm~P~TvgGKI  422 (507)
T KOG1545|consen  348 QILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIP-----DAFWWAVVTMTTVGYGDMVPVTVGGKI  422 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCc-----ccceEEEEEEEeeccccceecccCcee
Confidence            44444  3355555666655555 457899999999998888888776     689999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccc
Q psy6107         142 FLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       142 ~~~~~~l~g~~~~a~~i  158 (161)
                      +..++.+.|++.+|+|+
T Consensus       423 VGslCAiaGVLTiALPV  439 (507)
T KOG1545|consen  423 VGSLCAIAGVLTIALPV  439 (507)
T ss_pred             hhhHHhhhhheEecccc
Confidence            99999999999999985

>KOG4390|consensus

Probab=99.93  E-value=3.7e-28  Score=192.22  Aligned_cols=152  Identities=25%  Similarity=0.439  Sum_probs=130.2

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH---
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT------WIGLRFLRALRLMTVPDILQYLNILKTSSS---   72 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~------~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~---   72 (161)
                      .||++|+++||++-+|+++-.+++|.++++|+|+.+....+      ...+|++|++|+++.-|..+.+|.+....+   
T Consensus       242 ~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCA  321 (632)
T KOG4390|consen  242 GEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCA  321 (632)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHHHHH
Confidence            48999999999999999999999999999999998876544      234788888888888888888888776433   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhh
Q psy6107          73 IRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV  152 (161)
Q Consensus        73 ~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~  152 (161)
                      .++..+++.....++++|.++|+.|++.+...|++++     .|+|++++||||.||||++|.|.+||++..++.+.|++
T Consensus       322 SELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIP-----aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVL  396 (632)
T KOG4390|consen  322 SELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIP-----AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVL  396 (632)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCc-----HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceE
Confidence            3455555555555678999999999999999999887     48889999999999999999999999999999999999


Q ss_pred             hccccc
Q psy6107         153 SDPFPL  158 (161)
Q Consensus       153 ~~a~~i  158 (161)
                      ++|+|+
T Consensus       397 VIALPV  402 (632)
T KOG4390|consen  397 VIALPV  402 (632)
T ss_pred             EEeccc
Confidence            999985

>KOG1419|consensus

Probab=99.93  E-value=6.3e-27  Score=191.15  Aligned_cols=156  Identities=24%  Similarity=0.332  Sum_probs=124.1

Q ss_pred             ceehhhHhcccc---------hhhhhcchhhHHHHHhhhhHHHHHHhh--------hchhhHHHHHHHHHHHHHHHHHHH
Q psy6107           2 VYYFIRFIAASD---------KLWFMLEMYSFVDYFTIPPSFVSIYLD--------RTWIGLRFLRALRLMTVPDILQYL   64 (161)
Q Consensus         2 ~e~~~r~~~a~~---------~~~y~~~~~~iiDl~~~~P~~~~~~~~--------~~~~~~~~lr~lRl~rl~r~~~~~   64 (161)
                      .||++|+|+|.+         |++|.++|..+||++.++.....+...        ++..++|++.++|++|+.|-...+
T Consensus       140 ~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTW  219 (654)
T KOG1419|consen  140 LEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTW  219 (654)
T ss_pred             HHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchh
Confidence            599999999984         688999999999999877654443332        224568888888888888888788


Q ss_pred             HHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhH
Q psy6107          65 NILKTS---SSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRT  141 (161)
Q Consensus        65 ~~l~~~---~~~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri  141 (161)
                      +.+...   .+.++.....+-+..++..+.+.|..|++.+++ .+|....+|.||+||+++|+|||||||.+|+|+.||+
T Consensus       220 KLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e-~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~  298 (654)
T KOG1419|consen  220 KLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGE-GTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRL  298 (654)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccccchhHHHHHHhhheeEEeeccCCcCcccchhHH
Confidence            887763   344444443444444557788899999986653 4455567999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccc
Q psy6107         142 FLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       142 ~~~~~~l~g~~~~a~~i  158 (161)
                      ++.++.++|+.+||.|.
T Consensus       299 laa~fsligiSFFALPA  315 (654)
T KOG1419|consen  299 LAACFSLIGISFFALPA  315 (654)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=5.7e-25  Score=193.50  Aligned_cols=156  Identities=22%  Similarity=0.363  Sum_probs=113.3

Q ss_pred             ceehhhHhccc--------------chhhhhcchhhHHHHHhhhhHHHHHHh-hhc---hhhHHHHHHHHHHHHHHHHHH
Q psy6107           2 VYYFIRFIAAS--------------DKLWFMLEMYSFVDYFTIPPSFVSIYL-DRT---WIGLRFLRALRLMTVPDILQY   63 (161)
Q Consensus         2 ~e~~~r~~~a~--------------~~~~y~~~~~~iiDl~~~~P~~~~~~~-~~~---~~~~~~lr~lRl~rl~r~~~~   63 (161)
                      +|+++|++.+-              -.++|+++ |+++|+++++|+.+.... .+.   ...++++|++|++|+.|+.+.
T Consensus       107 iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~  185 (823)
T PLN03192        107 VDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQL  185 (823)
T ss_pred             HHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            57888888871              25789877 789999999999765432 222   224677778888888777777


Q ss_pred             HHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCC-CC--------CcccchhhhhHhhhhhheecc
Q psy6107          64 LNILKTSSS-----IRLAQLVSIFISVWLTAAGIIHLLENSG--DPFE-FN--------NPQQLSYWTCVYFLIVTMSTV  127 (161)
Q Consensus        64 ~~~l~~~~~-----~~~~~l~~~~~~~~~~~a~~~~~~e~~~--~~~~-~~--------~~~~~~~~~slyf~~~TltTv  127 (161)
                      .+.+++...     .++..++...+.+.+++||++|.+....  ++.+ .+        .....+|..|+||+++|||||
T Consensus       186 ~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTV  265 (823)
T PLN03192        186 FTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTV  265 (823)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhc
Confidence            766654322     2344555555566677889888875321  1111 11        111257999999999999999


Q ss_pred             ccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         128 GYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       128 GYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ||||++|+|+.||++++++|++|++++|+.|
T Consensus       266 GYGDi~p~t~~E~i~~i~~ml~g~~~~a~~i  296 (823)
T PLN03192        266 GYGDLHAVNTIEMIFIIFYMLFNLGLTAYLI  296 (823)
T ss_pred             cCCCcCCCccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>KOG1420|consensus

Probab=99.91  E-value=9.1e-26  Score=185.80  Aligned_cols=154  Identities=82%  Similarity=1.397  Sum_probs=146.6

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSI   81 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~~~l~~~   81 (161)
                      +-|.+|+.+|.+|..|+...+.++|..++.|.++.+....+|.++|++|.+|+..+..++++++.++++.+.++..++.+
T Consensus       177 vyffirfiaasdklwf~lemys~vdfftippsfvsiyl~r~wlglrflralrlmtvpdilqylnilktsssirl~qlvsi  256 (1103)
T KOG1420|consen  177 VYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRALRLMTVPDILQYLNILKTSSSIRLVQLVSI  256 (1103)
T ss_pred             HHHHHHHhhcccceeeeeehhhheeeeecCchheEEEeccchHHHHHHHHHHhccHHHHHHHHHHHhccchhhHHHHHHH
Confidence            34678999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCC-CCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107          82 FISVWLTAAGIIHLLENSGDPFE-FNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP  155 (161)
Q Consensus        82 ~~~~~~~~a~~~~~~e~~~~~~~-~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a  155 (161)
                      ++..++..|+..+.+|+.++|+. |.|....+|++++||.++||+||||||++..|..||++.+++++.|..+||
T Consensus       257 fisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfa  331 (1103)
T KOG1420|consen  257 FISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFA  331 (1103)
T ss_pred             HHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999998864 877777899999999999999999999999999999999999999999987

>KOG0498|consensus

Probab=99.84  E-value=2.6e-20  Score=159.39  Aligned_cols=144  Identities=21%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             hhhhhcchhhHHHHHhhhhHHHHHHhhh---------chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHH
Q psy6107          14 KLWFMLEMYSFVDYFTIPPSFVSIYLDR---------TWIGLRFLRALRLMTVPDILQYLNILKTSSSIR-------LAQ   77 (161)
Q Consensus        14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~---------~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~-------~~~   77 (161)
                      .++|+++ |+++|+++++|+........         .....+++.+.|++|+.|+.++++.+.+.....       .+.
T Consensus       158 A~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~  236 (727)
T KOG0498|consen  158 AKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAAL  236 (727)
T ss_pred             HHHHHhh-hHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            4799997 89999999999987655321         223467788888888888888887776644332       224


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCC------CCCCC------cc-----------cchhhhhHhhhhhheeccccccccc
Q psy6107          78 LVSIFISVWLTAAGIIHLLENSGDP------FEFNN------PQ-----------QLSYWTCVYFLIVTMSTVGYGDVYC  134 (161)
Q Consensus        78 l~~~~~~~~~~~a~~~~~~e~~~~~------~~~~~------~~-----------~~~~~~slyf~~~TltTvGYGDi~P  134 (161)
                      ++++++.+.++.||++|.+....++      ++..+      .+           ..+|..|+||+++||||+||||.+|
T Consensus       237 ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s  316 (727)
T KOG0498|consen  237 LLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHA  316 (727)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCC
Confidence            4555666667788888877332211      11110      00           1579999999999999999999999


Q ss_pred             cccchhHHHHHHHHHhhhhccccc
Q psy6107         135 QTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       135 ~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      .++.|++++++.|++|.+++|+.|
T Consensus       317 ~~~~E~iFsi~~mi~GllL~A~lI  340 (727)
T KOG0498|consen  317 NNMGEKIFSIFIMLFGLLLFAYLI  340 (727)
T ss_pred             CCcHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999999999999999865

>KOG0501|consensus

Probab=99.81  E-value=1.9e-19  Score=148.80  Aligned_cols=141  Identities=18%  Similarity=0.234  Sum_probs=107.4

Q ss_pred             hhhhhcchhhHHHHHhhhhHHHHHHhhhch----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy6107          14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTW----IGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTA   89 (161)
Q Consensus        14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~----~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~   89 (161)
                      |.+|+|+ |++||+++++|+.+.-.+....    ..+..+++.|++|+.|+.|.++..-+.....+..+++.+..+-...
T Consensus       289 RmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWl  367 (971)
T KOG0501|consen  289 RMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWL  367 (971)
T ss_pred             hHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            6799999 7999999999999887776543    3467788888888888887776544444444555556666666678


Q ss_pred             HHHHHhhhcC---------CCCC------------------------CCCCcccchhhhhHhhhhhheeccccccccccc
Q psy6107          90 AGIIHLLENS---------GDPF------------------------EFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQT  136 (161)
Q Consensus        90 a~~~~~~e~~---------~~~~------------------------~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t  136 (161)
                      ||+||.+...         .+++                        ..+.+..+.|..|+||+++.|||||||++.|.|
T Consensus       368 ACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~T  447 (971)
T KOG0501|consen  368 ACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNT  447 (971)
T ss_pred             HHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCc
Confidence            9999877431         0000                        011122378999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhhhhcc
Q psy6107         137 ILGRTFLVFFLLVGLVSDP  155 (161)
Q Consensus       137 ~~~ri~~~~~~l~g~~~~a  155 (161)
                      +.||++++++|++|..++|
T Consensus       448 D~EKiF~v~mMii~aLLYA  466 (971)
T KOG0501|consen  448 DNEKIFGVCMMIIGALLYA  466 (971)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.63  E-value=6.1e-16  Score=99.19  Aligned_cols=65  Identities=32%  Similarity=0.600  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          86 WLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        86 ~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++..++.++..+++        .+..++.||+||+++|+||+||||+.|+++.||+++++.++.|+.++++-+
T Consensus         6 ~l~~~~~~~~~~~~--------~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~   70 (79)
T PF07885_consen    6 VLAFGAIFFYISEG--------SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFL   70 (79)
T ss_dssp             HHHHHHHHHHHTTS--------SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeHHHHHHHHHHHh--------cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHH
Confidence            34556666555221        113699999999999999999999999999999999999999999987643

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=99.62  E-value=1.4e-15  Score=111.48  Aligned_cols=156  Identities=24%  Similarity=0.348  Sum_probs=97.0

Q ss_pred             ceehhhHhcccc-hhhhhcchhhHHHHHhhhhHHHHHHhhhch-----hhHHHHHHHHHHHHHHHHHHHHHHHH---h--
Q psy6107           2 VYYFIRFIAASD-KLWFMLEMYSFVDYFTIPPSFVSIYLDRTW-----IGLRFLRALRLMTVPDILQYLNILKT---S--   70 (161)
Q Consensus         2 ~e~~~r~~~a~~-~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~-----~~~~~lr~lRl~rl~r~~~~~~~l~~---~--   70 (161)
                      +|.++|++..+. +++|++++|+++|+++++|..+........     ...+..|++|.+|+.|+.+..+.++.   .  
T Consensus        12 ~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~   91 (200)
T PF00520_consen   12 LEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALI   91 (200)
T ss_dssp             HHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccccccccccccc
Confidence            588899998886 499999999999999999986665433211     12455555555555555544332222   1  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----------CCCCCcccchhhhhHhhhhhheecccccccccc---
Q psy6107          71 -SSIRLAQLVSIFISVWLTAAGIIHLLENSGDP-----------FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQ---  135 (161)
Q Consensus        71 -~~~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~-----------~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~---  135 (161)
                       ...+......+.....+.+|+..+..-++.+.           +.......++|..|+||+..++||.|+||..|.   
T Consensus        92 ~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~  171 (200)
T PF00520_consen   92 RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMS  171 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHH
T ss_pred             cccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCCcccccccccc
Confidence             11222333333334444566665555333221           111222337899999999999999999999998   


Q ss_pred             --ccchhHHH-HHHHHHhhhhcccc
Q psy6107         136 --TILGRTFL-VFFLLVGLVSDPFP  157 (161)
Q Consensus       136 --t~~~ri~~-~~~~l~g~~~~a~~  157 (161)
                        +..+.++. ....+.++.++++.
T Consensus       172 ~~~~~~~~~~~~~~~i~~~~l~nll  196 (200)
T PF00520_consen  172 ARSWLAVIFFISFIIIVSILLLNLL  196 (200)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHhhhhhhhHHHHHHHHH
Confidence              78889888 44555555665543

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.55  E-value=4.8e-14  Score=114.99  Aligned_cols=130  Identities=25%  Similarity=0.316  Sum_probs=79.0

Q ss_pred             hhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Q psy6107          14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGI-   92 (161)
Q Consensus        14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~a~~-   92 (161)
                      |..|+.+..-++|.++..       .. .....+.++.+-++++..+....+...+...........+.+...+..+.. 
T Consensus        83 r~~w~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~g  154 (393)
T PRK10537         83 RLAWAISILLLLAALAIT-------LH-FYPWLKFLIGYCIVLLVALLIYRRDFDRSSLAAGTLFAVISITSLLFYSTFG  154 (393)
T ss_pred             HHHHHHHHHHHHHHHHHh-------cc-cccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666554444444432       01 112244555555666666666666555542221111112222223334433 


Q ss_pred             HHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107          93 IHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP  157 (161)
Q Consensus        93 ~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~  157 (161)
                      .++.|.+.+|      +..++.||+||+++|+||+||||+.|.|+.||++++.+++.|+++++..
T Consensus       155 ~~~~~~~f~~------~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~  213 (393)
T PRK10537        155 ALYLGDGFSP------PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATS  213 (393)
T ss_pred             HHHHccccCc------CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4555542221      2358999999999999999999999999999999999999999988654

>KOG0500|consensus

Probab=99.45  E-value=6.4e-13  Score=108.43  Aligned_cols=140  Identities=15%  Similarity=0.233  Sum_probs=100.0

Q ss_pred             hhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHH
Q psy6107          14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKT----SSSIRLAQLVSIFISVWLTA   89 (161)
Q Consensus        14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~----~~~~~~~~l~~~~~~~~~~~   89 (161)
                      +++|+.|..+.+|++|++|.+...+..+.....|+.|++|   +.|+.....+-++    ....++..+....+.+.+..
T Consensus        68 ~~hY~~s~~f~lD~l~liP~D~l~~~~~~~~~~r~nRllk---~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWN  144 (536)
T KOG0500|consen   68 RKHYVHSTQFKLDVLSLIPLDLLLFKDGSASLERLNRLLK---IYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWN  144 (536)
T ss_pred             HHHHHHhhhhhhhhhhhcchhHHhhcCCcchHHHHHHHHH---HHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999888776654445444444   4444444443332    22445666666666677788


Q ss_pred             HHHHHhhhcCCC----CCCCCCc------------ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhh
Q psy6107          90 AGIIHLLENSGD----PFEFNNP------------QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVS  153 (161)
Q Consensus        90 a~~~~~~e~~~~----~~~~~~~------------~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~  153 (161)
                      ||++|.+....+    .+..++.            -..+|.-|+||+.-|+||+| -.-.|.|+.+-.+.++--++|+.+
T Consensus       145 aClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvli  223 (536)
T KOG0500|consen  145 ACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLI  223 (536)
T ss_pred             hHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHH
Confidence            999888744321    1111100            11679999999999999999 456899999999999999999999


Q ss_pred             cccc
Q psy6107         154 DPFP  157 (161)
Q Consensus       154 ~a~~  157 (161)
                      ||-.
T Consensus       224 FAtI  227 (536)
T KOG0500|consen  224 FATI  227 (536)
T ss_pred             Hhhh
Confidence            9854

>KOG0499|consensus

Probab=99.31  E-value=1.1e-11  Score=103.37  Aligned_cols=143  Identities=15%  Similarity=0.171  Sum_probs=107.6

Q ss_pred             hhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Q psy6107          14 KLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTS-SSIRLAQLVSIFISVWLTAAGI   92 (161)
Q Consensus        14 ~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~a~~   92 (161)
                      +++|+++-.+-+|++|++|+.+..++-+.....|+.|+++.--.+.+.+.++.+-.+ ...+........+.++++.||+
T Consensus       301 rk~Yl~sr~FklDllsiLPldllY~~~G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacv  380 (815)
T KOG0499|consen  301 RKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACV  380 (815)
T ss_pred             HHHHHHhhhhhhhHHhhhhHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHH
Confidence            689999999999999999999887766655455665555555555555555433322 2335555556666777888999


Q ss_pred             HHhhhcC----CCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          93 IHLLENS----GDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        93 ~~~~e~~----~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +|....-    .+-+.+++.+ ..|..++||++-|++|+| |.-.|+|..|.++..+--++|+.+||..|
T Consensus       381 YY~~SayqglG~~rWVydg~G-n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslli  448 (815)
T KOG0499|consen  381 YYWASAYQGLGTTRWVYDGEG-NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLI  448 (815)
T ss_pred             HHHHHhhcccccceeEEcCCC-CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877442    2334456666 599999999999999999 89999999999999999999999998765

>KOG1418|consensus

Probab=98.85  E-value=1.6e-09  Score=88.17  Aligned_cols=49  Identities=33%  Similarity=0.563  Sum_probs=44.8

Q ss_pred             ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107         109 QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP  157 (161)
Q Consensus       109 ~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~  157 (161)
                      ..+++.+|+||+.+++||+|||+++|.|..||+++++..++|+-++.+.
T Consensus       112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~  160 (433)
T KOG1418|consen  112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLI  160 (433)
T ss_pred             cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHH
Confidence            3479999999999999999999999999999999999999999776543

>KOG3684|consensus

Probab=98.82  E-value=2.4e-08  Score=81.45  Aligned_cols=72  Identities=22%  Similarity=0.461  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107          82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP  157 (161)
Q Consensus        82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~  157 (161)
                      .+..|++.+...-.+|...+...    ...+|.+|+|+..+|+-++||||++|.|..||.++++..++|.++-|+-
T Consensus       261 tl~~Wii~sW~~~~cER~~~~~~----~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sall  332 (489)
T KOG3684|consen  261 TLSLWIIASWMLRQCERYHDSQD----VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLL  332 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchh----hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHH
Confidence            44456677777777787544322    3368999999999999999999999999999999999999999887654

>KOG4404|consensus

Probab=98.77  E-value=9.9e-09  Score=80.40  Aligned_cols=45  Identities=31%  Similarity=0.569  Sum_probs=38.8

Q ss_pred             chhhhhHhhhhhheecccccccccccc--------chhHHHHHHHHHhhhhcc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTI--------LGRTFLVFFLLVGLVSDP  155 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~--------~~ri~~~~~~l~g~~~~a  155 (161)
                      ++|+||+||+.+|+||||+||.++-..        .-+.++.+.+++|+++++
T Consensus       185 Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~  237 (350)
T KOG4404|consen  185 WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIY  237 (350)
T ss_pred             cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHH
Confidence            899999999999999999999987633        446788889999998875

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=98.70  E-value=7e-08  Score=77.42  Aligned_cols=81  Identities=23%  Similarity=0.372  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh--cCC-CC----CCCCC--cccchhhhhHhhhhhheecccccc--ccccccchhHHHHH
Q psy6107          77 QLVSIFISVWLTAAGIIHLLE--NSG-DP----FEFNN--PQQLSYWTCVYFLIVTMSTVGYGD--VYCQTILGRTFLVF  145 (161)
Q Consensus        77 ~l~~~~~~~~~~~a~~~~~~e--~~~-~~----~~~~~--~~~~~~~~slyf~~~TltTvGYGD--i~P~t~~~ri~~~~  145 (161)
                      .....++..++++|.++|.+.  +++ ++    ...+.  .+..++.+|++|++.|+||||||.  ++|..+.+-+++.+
T Consensus        40 ~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~  119 (336)
T PF01007_consen   40 LFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTI  119 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHH
Confidence            334556777889999988652  211 11    00100  112589999999999999999998  67888999999999


Q ss_pred             HHHHhhhhcccc
Q psy6107         146 FLLVGLVSDPFP  157 (161)
Q Consensus       146 ~~l~g~~~~a~~  157 (161)
                      .+++|+++.|+.
T Consensus       120 q~~~g~l~~a~~  131 (336)
T PF01007_consen  120 QSLVGLLLDAFM  131 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887753

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG3193|consensus

Probab=98.59  E-value=1.2e-07  Score=79.36  Aligned_cols=45  Identities=38%  Similarity=0.620  Sum_probs=40.3

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP  155 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a  155 (161)
                      .+.++|+||.++|++||||||.+|.-+++++..++++..+.++++
T Consensus       216 i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip  260 (1087)
T KOG3193|consen  216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIP  260 (1087)
T ss_pred             eeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccH
Confidence            467889999999999999999999999999999888888777765

>KOG4404|consensus

Probab=98.53  E-value=8e-08  Score=75.38  Aligned_cols=44  Identities=32%  Similarity=0.594  Sum_probs=40.7

Q ss_pred             ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhh
Q psy6107         109 QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV  152 (161)
Q Consensus       109 ~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~  152 (161)
                      +.+++..|+||+.+-+||||||.-.|.|+.||+++++..++|+-
T Consensus        77 ~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gip  120 (350)
T KOG4404|consen   77 PQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIP  120 (350)
T ss_pred             cccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCc
Confidence            34889999999999999999999999999999999999998864

>KOG1418|consensus

Probab=98.01  E-value=1e-06  Score=71.74  Aligned_cols=48  Identities=31%  Similarity=0.667  Sum_probs=42.2

Q ss_pred             chhhhhHhhhhhheeccccccccccccchh--------HHHHHHHHHhhhhccccc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGR--------TFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~r--------i~~~~~~l~g~~~~a~~i  158 (161)
                      ++|.+|+||+.+|+|||||||+.|.++.++        .....+.++|....+...
T Consensus       241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence            789999999999999999999999999877        588888888887776543

>KOG2301|consensus

Probab=97.36  E-value=0.0015  Score=61.63  Aligned_cols=65  Identities=15%  Similarity=0.230  Sum_probs=47.5

Q ss_pred             eehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6107           3 YYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKT   69 (161)
Q Consensus         3 e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~   69 (161)
                      |+.+.+++ .+...|+.+.+|++|.+.+. ..+..........++++|.+|++|++|+.|.+..++.
T Consensus       489 Em~~ki~a-l~~~~yF~~~~n~fD~~iv~-l~~~~~~~~~~~g~svLr~frllRIfkl~k~wp~l~~  553 (1592)
T KOG2301|consen  489 EMILKIYA-LGPRNYFRRGWNIFDLIIVL-LSLLELLLKNVYGLSVLRSFRLLRIFKLIKSWPTLND  553 (1592)
T ss_pred             HHHHHHHH-cCcHHHHhhhcchheEEEEe-hhhHHhcccchHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44444443 44778888899999999988 4444344555677899999999999999988766654

>KOG3827|consensus

Probab=97.26  E-value=0.0015  Score=52.89  Aligned_cols=83  Identities=25%  Similarity=0.340  Sum_probs=57.7

Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHhhhc-------CCCCCC----CCCcccchhhhhHhhhhhheeccccccccccc--
Q psy6107          72 SIRLAQLV--SIFISVWLTAAGIIHLLEN-------SGDPFE----FNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQT--  136 (161)
Q Consensus        72 ~~~~~~l~--~~~~~~~~~~a~~~~~~e~-------~~~~~~----~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t--  136 (161)
                      +++...++  ..+++-|+++|.++|.+-.       +..+.+    ..+.  .++..||-|++=|=||+|||--++..  
T Consensus        61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV--~sf~sAFLFSiETQtTIGYG~R~vTeeC  138 (400)
T KOG3827|consen   61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNV--HSFTSAFLFSIETQTTIGYGFRYVTEEC  138 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeec--cchhhhheeeeeeeeeeeccccccCccC
Confidence            44444433  3466678999999997722       111111    1222  68899999999999999999877665  


Q ss_pred             cchhHHHHHHHHHhhhhccc
Q psy6107         137 ILGRTFLVFFLLVGLVSDPF  156 (161)
Q Consensus       137 ~~~ri~~~~~~l~g~~~~a~  156 (161)
                      |.+-...++.++.|+++=|+
T Consensus       139 P~aI~ll~~Q~I~g~ii~af  158 (400)
T KOG3827|consen  139 PEAIFLLVLQSILGVIINAF  158 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            56778888899999877554

>PLN03223 Polycystin cation channel protein; Provisional

Probab=96.98  E-value=0.012  Score=54.63  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=16.6

Q ss_pred             chhhhhcchhhHHHHHhhhh
Q psy6107          13 DKLWFMLEMYSFVDYFTIPP   32 (161)
Q Consensus        13 ~~~~y~~~~~~iiDl~~~~P   32 (161)
                      ++++|++++|||+|++.+.=
T Consensus      1206 ~~laYFKSfWNwLEIl~IlL 1225 (1634)
T PLN03223       1206 SYLAYFLSGWNYVDFASIGL 1225 (1634)
T ss_pred             chhhHhccchHHHHHHHHHH
Confidence            45899999999999977554

>KOG2302|consensus

Probab=96.72  E-value=0.012  Score=53.20  Aligned_cols=57  Identities=18%  Similarity=0.341  Sum_probs=34.9

Q ss_pred             chhhhhcchhhHHHHHhhhhHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6107          13 DKLWFMLEMYSFVDYFTIPPSFVSIYLDRT-WIGLRFLRALRLMTVPDILQYLNILKT   69 (161)
Q Consensus        13 ~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~-~~~~~~lr~lRl~rl~r~~~~~~~l~~   69 (161)
                      ....|+++.||++|-+.+.-..+.+..... ....|++.++|++|++|-+|.+|.+..
T Consensus      1185 ge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSr 1242 (1956)
T KOG2302|consen 1185 GEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISR 1242 (1956)
T ss_pred             chHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            468899999999998766554443332222 224566666666666666665555544

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=96.65  E-value=0.035  Score=46.06  Aligned_cols=21  Identities=10%  Similarity=0.292  Sum_probs=17.5

Q ss_pred             chhhhhcchhhHHHHHhhhhH
Q psy6107          13 DKLWFMLEMYSFVDYFTIPPS   33 (161)
Q Consensus        13 ~~~~y~~~~~~iiDl~~~~P~   33 (161)
                      .+++|++++||++|++.++=.
T Consensus       235 ~g~~y~~~~WN~~e~~ii~ls  255 (425)
T PF08016_consen  235 EGRAYFKSFWNWLELLIILLS  255 (425)
T ss_pred             hhhHHhhhcCcHHHHHHHHHH
Confidence            348999999999999987653

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG2301|consensus

Probab=96.55  E-value=0.011  Score=56.17  Aligned_cols=62  Identities=16%  Similarity=0.284  Sum_probs=40.7

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc-hhhHHHHHHHHHHHHHHHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT-WIGLRFLRALRLMTVPDILQYL   64 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~-~~~~~~lr~lRl~rl~r~~~~~   64 (161)
                      +|.++.+.+-.-+. |+++.|+++|++.+.-..+.+..... ....|.+|.+|.+|-+|..+..
T Consensus       887 ~Em~lK~ia~Gf~~-y~rn~w~~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~  949 (1592)
T KOG2301|consen  887 FEMLLKWIAYGFFF-YFRNAWNWLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRF  949 (1592)
T ss_pred             HHHHHHHHHhHHHH-HHhhHHhhhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence            56777777776666 99999999999998887777665443 2234444444444444444433

>KOG2302|consensus

Probab=96.25  E-value=0.0025  Score=57.35  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=61.7

Q ss_pred             chhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHH
Q psy6107          13 DKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSS---------SIRLAQLVSIFI   83 (161)
Q Consensus        13 ~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~---------~~~~~~l~~~~~   83 (161)
                      .-.+|.++|+|+.|=++.+-...++ .+++.-++..+|-+|++|..++.|+...+++..         ......++.+++
T Consensus       676 g~f~y~rnPynifdgiiv~is~wEi-Vgqq~GglsvlrtFrllrvlkLvrf~palqrqlvvl~ktmdnvAtfctllmLfi  754 (1956)
T KOG2302|consen  676 GFFRYHRNPYNIFDGIIVAISHWEI-VGQQDGGLSVLRTFRLLRVLKLVRFSPALQRQLVVLMKTMDNVATFCTLLMLFI  754 (1956)
T ss_pred             cchhccCCCcccCCCeEEEEEeeEe-ecccCCCcCCCcHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhhhhHHHHHH
Confidence            3678999999999988766432222 333333455666666666666665555444321         111122233333


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccc
Q psy6107          84 SVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVG  128 (161)
Q Consensus        84 ~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvG  128 (161)
                      .+.-+.+.-.|-.....+.+..+..++.+-+|++-|+++|.--+|
T Consensus       755 fifsIlgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqil  799 (1956)
T KOG2302|consen  755 FIFSILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQIL  799 (1956)
T ss_pred             HHHhhhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhh
Confidence            332222222222222222233455566777899999999876555

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=94.81  E-value=0.68  Score=41.15  Aligned_cols=17  Identities=6%  Similarity=0.292  Sum_probs=14.0

Q ss_pred             hhhhhcchhhHHHHHhh
Q psy6107          14 KLWFMLEMYSFVDYFTI   30 (161)
Q Consensus        14 ~~~y~~~~~~iiDl~~~   30 (161)
                      ...|+++.||++|.+..
T Consensus       415 ~~~y~~~~wn~~d~~~~  431 (743)
T TIGR00870       415 IFEYIHQLWNILDFGMN  431 (743)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45799999999999544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=94.03  E-value=0.047  Score=38.00  Aligned_cols=44  Identities=18%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP  155 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a  155 (161)
                      .+..+++|++..+++. +-++..|.+..+|++...+.+.++++.+
T Consensus        43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~   86 (148)
T PF00060_consen   43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIA   86 (148)
T ss_dssp             HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHH
Confidence            6788899999888876 5578999999999999999999887654

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>KOG3599|consensus

Probab=93.26  E-value=2.7  Score=37.97  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=17.9

Q ss_pred             hhhhhcchhhHHHHHhhhhHHHH
Q psy6107          14 KLWFMLEMYSFVDYFTIPPSFVS   36 (161)
Q Consensus        14 ~~~y~~~~~~iiDl~~~~P~~~~   36 (161)
                      .++|++++||++|++...=..+.
T Consensus       492 ~~~y~~s~wN~ld~~i~~ls~~~  514 (798)
T KOG3599|consen  492 LGRYVRSKWNWLDLAIVLLSVVL  514 (798)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHH
Confidence            34999999999999886654443

>TIGR00933 2a38 potassium uptake protein, TrkH family

Probab=92.30  E-value=0.46  Score=39.07  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=36.3

Q ss_pred             chhhhhHhhhhhheeccccc--cccccccchhHHHHHHHHHhhhh
Q psy6107         111 LSYWTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLVS  153 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYG--Di~P~t~~~ri~~~~~~l~g~~~  153 (161)
                      ....++.+++.++.+|.||.  |..--++..+++.++.|++|.+-
T Consensus       230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~  274 (390)
T TIGR00933       230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS  274 (390)
T ss_pred             HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence            56788999999999999984  66666778999999999999653

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.

>PRK05482 potassium-transporting ATPase subunit A; Provisional

Probab=87.80  E-value=2.5  Score=36.53  Aligned_cols=41  Identities=15%  Similarity=0.210  Sum_probs=36.1

Q ss_pred             cchhhhhHhhhhhheeccc--cccccccccchhHHHHHHHHHh
Q psy6107         110 QLSYWTCVYFLIVTMSTVG--YGDVYCQTILGRTFLVFFLLVG  150 (161)
Q Consensus       110 ~~~~~~slyf~~~TltTvG--YGDi~P~t~~~ri~~~~~~l~g  150 (161)
                      ...+.+.+|=..+...|+|  .|++.|.|+.+|+..++.|++|
T Consensus       449 ~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG  491 (559)
T PRK05482        449 PHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG  491 (559)
T ss_pred             CCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence            3578888999999999998  4668999999999999999987

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=85.62  E-value=3.1  Score=33.70  Aligned_cols=38  Identities=24%  Similarity=0.564  Sum_probs=26.4

Q ss_pred             hhhhHhhhhhheecccc--cccccc-ccc---hhHHHHHHHHHh
Q psy6107         113 YWTCVYFLIVTMSTVGY--GDVYCQ-TIL---GRTFLVFFLLVG  150 (161)
Q Consensus       113 ~~~slyf~~~TltTvGY--GDi~P~-t~~---~ri~~~~~~l~g  150 (161)
                      +.++++=++..++|||.  |...|. +..   +|++.++.|+.|
T Consensus       295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G  338 (354)
T PF02386_consen  295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG  338 (354)
T ss_dssp             -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence            67888899999999985  442233 344   999999999988

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length

Probab=84.24  E-value=3.8  Score=30.14  Aligned_cols=51  Identities=20%  Similarity=0.342  Sum_probs=42.4

Q ss_pred             CCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107         105 FNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP  155 (161)
Q Consensus       105 ~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a  155 (161)
                      |.+.+.-+|+|-+||+.+.=||-.-.|..+.|..-|-.+..-.+++..+-+
T Consensus       125 FP~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt  175 (180)
T PF07077_consen  125 FPGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNT  175 (180)
T ss_pred             CCCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            444444699999999999999988899999999999999888888776544

The function of this family is unknown.

>KOG3609|consensus

Probab=80.47  E-value=15  Score=33.22  Aligned_cols=21  Identities=10%  Similarity=0.221  Sum_probs=17.7

Q ss_pred             chhhhhcchhhHHHHHhhhhH
Q psy6107          13 DKLWFMLEMYSFVDYFTIPPS   33 (161)
Q Consensus        13 ~~~~y~~~~~~iiDl~~~~P~   33 (161)
                      +...|++.+||++|.+.+.-+
T Consensus       409 G~~~y~~~~Wn~lDf~m~siy  429 (822)
T KOG3609|consen  409 GRDGYLAFWWNWLDFAMISIY  429 (822)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999886544

>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3

Probab=80.01  E-value=4.1  Score=32.97  Aligned_cols=50  Identities=16%  Similarity=0.305  Sum_probs=28.1

Q ss_pred             CCCCcccchhhhhHhhhhhheeccccc--cccccccchhHHHHHHHHHhhhh
Q psy6107         104 EFNNPQQLSYWTCVYFLIVTMSTVGYG--DVYCQTILGRTFLVFFLLVGLVS  153 (161)
Q Consensus       104 ~~~~~~~~~~~~slyf~~~TltTvGYG--Di~P~t~~~ri~~~~~~l~g~~~  153 (161)
                      .+++.+......+.++..++.+|.||.  |+..-++..+++.++.|++|.+-
T Consensus       168 ~~~~~~~~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~  219 (354)
T PF02386_consen  168 TFGGLPFGSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSP  219 (354)
T ss_dssp             ---SSHHHHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-T
T ss_pred             ccCCCcHHHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCcc
Confidence            344444456667788888999999996  55545667788889999888654

6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	161
2k44_A	28	Solution Structure Of A K+-Channel Voltage-Sensor P		7e-05
2r9r_B	514	Shaker Family Voltage Dependent Potassium Channel (		3e-04
3lnm_B	514	F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan		4e-04

>pdb|2K44|A Chain A, Solution Structure Of A K+-Channel Voltage-Sensor Paddle Domain Length = 28

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 32 PSFVSIYLDRTWIGLRFLRALRLMTVPD 59
          P FVS+YL+R+W+GLRFLRALRL+   +
Sbjct: 1  PVFVSVYLNRSWLGLRFLRALRLIQFSE 28

>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 4   YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIG-LRFLRALRLMTVPDILQ 62
           + +RF A   K  F   + + +D   I P +V+I+L  +    L+F    R++ +  I++
Sbjct: 256 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR 315
Query: 63  YLNILKTSSSIRLAQLVS----------------IFISVWLTAAGIIHLLENSGDPFEFN 106
            L I K S   +  Q++                 +FI V L ++ +     +  D     
Sbjct: 316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD----- 370
Query: 107 NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
             Q  S     ++ +V+M+TVGYGD+   TI G+
Sbjct: 371 -SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403

>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 4   YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIG-LRFLRALRLMTVPDILQ 62
           + +RF A   K  F   + + +D   I P +V+I+L  +    L+F    R++ +  I++
Sbjct: 256 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR 315
Query: 63  YLNILKTSSSIRLAQLVS----------------IFISVWLTAAGIIHLLENSGDPFEFN 106
            L I K S   +  Q++                 +FI V L ++ +     +  D     
Sbjct: 316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD----- 370
Query: 107 NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGR 140
             Q  S     ++ +V+M+TVGYGD+   TI G+
Sbjct: 371 -SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	161
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	4e-17
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	3e-16
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	3e-16
1lnq_A	336	MTHK channels, potassium channel related protein;	1e-10
2a9h_A	155	Voltage-gated potassium channel; potassium channel	4e-10
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	1e-09
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	2e-09
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	4e-09
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	5e-09
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	6e-09
2k44_A	28	Hsapbk, K+-channel voltage-sensor paddle domain of	1e-08
1p7b_A	333	Integral membrane channel and cytosolic domains; t	1e-08
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	3e-08
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	1e-07
2q67_A	114	Potassium channel protein; inverted teepee, helix	9e-07
3ouf_A	97	Potassium channel protein; ION channel, membrane,	2e-06
1xl4_A	301	Inward rectifier potassium channel; integral membr	2e-06
3um7_A	309	Potassium channel subfamily K member 4; potassium	7e-04

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 76.6 bits (188), Expect = 4e-17
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%)

Query: 4   YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLD-------RTWIGLRFLRALRLMT 56
           + +RF A   K  F   + + +D   I P +V+I+L        +     R ++  R+M 
Sbjct: 256 FLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMR 315

Query: 57  VPDI---------LQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNN 107
           +  I         LQ L     +S   L  L+       +  +  ++  E      +F +
Sbjct: 316 ILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPS 375

Query: 108 PQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
                +W      +V+M+TVGYGD+   TI G+       + G++
Sbjct: 376 IPDAFWWA-----VVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVL 415

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 73.4 bits (180), Expect = 3e-16
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 9/151 (5%)

Query: 4   YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQY 63
                +     +         +D   +     +  LD +        A+ L+       +
Sbjct: 56  LAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDGSPD-WSLYCAVWLLKPLRDSTF 114

Query: 64  LNILKT---SSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFL 120
             +L     + +  L  + ++F  V    A   +++E    P +F +  Q  +W      
Sbjct: 115 FPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWA----- 169

Query: 121 IVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
           +VT+ST GYGD   Q+  GR      ++ G+
Sbjct: 170 VVTLSTTGYGDTIPQSFAGRVLAGAVMMSGI 200

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 71.5 bits (176), Expect = 3e-16
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 4   YFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQY 63
           Y  R   + D   ++ +  +  +   + P+ +   ++    GL   R +RL+    IL  
Sbjct: 56  YAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLI 113

Query: 64  LN--------ILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWT 115
           ++        I   +  IR   L    +   L  A  I+++E              S + 
Sbjct: 114 ISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIK-----SVFD 168

Query: 116 CVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVG 150
            +++ +VT +TVGYGDV   T +G+   +  +L G
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTG 203

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 57  VPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTC 116
           V  I      L     +   +++ + ++V +      H +E              S+   
Sbjct: 2   VLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEG------------ESWTVS 49

Query: 117 VYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLV 152
           +Y+  VT++TVGYGD    T LG  F V  +++G+ 
Sbjct: 50  LYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIG 85

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 46  LRFLRALRLMTVPDILQYLNILKTSSSIR---LAQLVSIFISVWLTAAGIIHLLENSGDP 102
           +  + +  L  +  +L      +  S++          + + V L  + +  L E     
Sbjct: 24  MPPMLSGLLARLVKLLLG----RHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPG 79

Query: 103 FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
               +     +W+     + T +TVGYGD+Y  T+ GR   V  ++ G+
Sbjct: 80  AALISYPDALWWS-----VETATTVGYGDLYPVTLWGRCVAVVVMVAGI 123

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 46  LRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF 105
           +      RL+ +  + ++ + L+  +         + + V L  + +  L E      + 
Sbjct: 10  MLSGLLARLVKLL-LGRHGSALQWRA---AGAATVLLVIVLLAGSYLAVLAERGAPGAQL 65

Query: 106 NNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
               +  +W+     + T +TVGYGD+Y  T+ GR   V  ++ G+
Sbjct: 66  ITYPRALWWS-----VETATTVGYGDLYPVTLWGRLVAVVVMVAGI 106

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 19/106 (17%)

Query: 46  LRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEF 105
           L F+  L+ M           L+         L  +      +       +E        
Sbjct: 5   LSFILTLKRM-------LKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEG------- 50

Query: 106 NNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
                L     +YF +VT++TVG G+   QT  G+ F + ++ +G+
Sbjct: 51  -----LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGI 91

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 51.4 bits (123), Expect = 4e-09
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 75  LAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYC 134
                 + + V L  + +  L E      +     +  +W+     + T +TVGYGD+Y 
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWS-----VETATTVGYGDLYP 62

Query: 135 QTILGRTFLVFFLLVGL 151
            T+ GR   V  ++ G+
Sbjct: 63  VTLWGRLVAVVVMVAGI 79

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 74  RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVY 133
              +       V   A+      E         +     +W+     + T +TVGYGD Y
Sbjct: 7   EAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWS-----VETATTVGYGDRY 61

Query: 134 CQTILGRTFLVFFLLVGL 151
             T  GR      +  G+
Sbjct: 62  PVTEEGRKVAEQVMKAGI 79

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 50.5 bits (121), Expect = 6e-09
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 46  LRFLRALRLMTVPDILQYLNILKTSSSIR---LAQLVSIFISVWLTAAGIIHLLENSGDP 102
           +  + +  L  +  +L      +  S++          + + V L  + +  L E     
Sbjct: 1   MAPMLSGLLARLVKLLLG----RHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPG 56

Query: 103 FEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
            +     +  +W        T +TV YGD+Y  T+ GR   V  ++ G+
Sbjct: 57  AQLITYPRALWWA-----CETATTVAYGDLYPVTLWGRLVAVVVMVAGI 100

>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic} Length = 28

 Score = 47.3 bits (112), Expect = 1e-08
 Identities = 18/28 (64%), Positives = 24/28 (85%)

Query: 32 PSFVSIYLDRTWIGLRFLRALRLMTVPD 59
          P FVS+YL+R+W+GLRFLRALRL+   +
Sbjct: 1  PVFVSVYLNRSWLGLRFLRALRLIQFSE 28

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score = 51.7 bits (123), Expect = 1e-08
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 63  YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
           Y   LK S  +  A L ++F+      A +  L +               +    +F + 
Sbjct: 52  YYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPP-----GFVGAFFFSVE 106

Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
           T++TVGYGD++ QT+         + VG+       
Sbjct: 107 TLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST 142

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 12/118 (10%)

Query: 41  RTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSG 100
              +G    R L  +       +  ++          L  +F+ +    A +  L     
Sbjct: 19  HGNLGSETSRYLSDL-------FTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPI 71

Query: 101 DPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
                       +    +F + T++TVGYGD++ QT+         + VG+ S     
Sbjct: 72  ANQFPA-----GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALAT 124

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 73  IRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDV 132
           +   +++ + ++V +      H +E              S+   +Y+  VT++TVGYGD 
Sbjct: 1   VPATRILLLVLAVIIYGTAGFHFIEG------------ESWTVSLYWTFVTIATVGYGDY 48

Query: 133 YCQTILGRTFLVFFLLVGL 151
              T LG  F    +++G+
Sbjct: 49  SPHTPLGMYFTCTLIVLGI 67

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 66  ILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMS 125
            L+         L  + I   ++       +E             L     +YF +VT++
Sbjct: 15  CLRAWKDKEFQVLFVLTILTLISGTIFYSTVEG------------LRPIDALYFSVVTLT 62

Query: 126 TVGYGDVYCQTILGRTFLVFFLLVGL 151
           TVG G+   QT  G+ F + ++ +G+
Sbjct: 63  TVGAGNFSPQTDFGKIFTILYIFIGI 88

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 12/82 (14%)

Query: 70  SSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGY 129
           +       L  + I   ++       +E             L     +YF +VT++TVGY
Sbjct: 2   AKDKEFQVLFVLTILTLISGTIFYSTVEG------------LRPIDALYFSVVTLTTVGY 49

Query: 130 GDVYCQTILGRTFLVFFLLVGL 151
           GD   QT  G+ F + ++ +G+
Sbjct: 50  GDFSPQTDFGKIFTILYIFIGI 71

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 63  YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
           Y ++L  S  + +  +  +++      A       +  +          S+    +F + 
Sbjct: 38  YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPG-----SFTDAFFFSVQ 92

Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
           TM+T+GYG +     L  T +    L G++      
Sbjct: 93  TMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 128

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 92  IIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGL 151
           +    +        ++       +  +F    ++T+GYG+V  +T  GR F +F+ LVG+
Sbjct: 95  LGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGI 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.97
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.95
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.95
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.91
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.89
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.83
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.78
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.75
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.75
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.73
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.73
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.71
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.69
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.66
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.59
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.59
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.57
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.56
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.5
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.45
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.39
3sya_A	340	G protein-activated inward rectifier potassium CH;	99.39
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.37
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	99.36
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.35
1lnq_A	336	MTHK channels, potassium channel related protein;	99.34
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	99.29
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	99.18
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	93.69
2k44_A	28	Hsapbk, K+-channel voltage-sensor paddle domain of	88.52
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	86.39
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	84.61

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.97  E-value=4.7e-31  Score=198.75  Aligned_cols=150  Identities=21%  Similarity=0.305  Sum_probs=111.5

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc---hhhHHHHHHHHHHHHHHHHHH----HHHHHHhHH-H
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT---WIGLRFLRALRLMTVPDILQY----LNILKTSSS-I   73 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~---~~~~~~lr~lRl~rl~r~~~~----~~~l~~~~~-~   73 (161)
                      +|+++|++++++|++|+|+  |++|+++++|+++.......   ...+|.+|++|++|+.|..+.    .+.+.+..+ .
T Consensus        54 ~e~~lr~~~~~~~~~y~~~--~iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~  131 (223)
T 1orq_C           54 ADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKI  131 (223)
T ss_dssp             HHHHHHHHTTSCHHHHHHH--HHHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHcccccHHHHHHH--hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999998  89999999999876532111   234666666666666666552    222222211 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhh
Q psy6107          74 RLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVS  153 (161)
Q Consensus        74 ~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~  153 (161)
                      ++..++...+..++.+|+.+|..|++++++.     ..+|.+|+||+++|+||+||||++|+|+.||++++++|+.|+++
T Consensus       132 ~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~  206 (223)
T 1orq_C          132 RFYHLFGAVMLTVLYGAFAIYIVEYPDPNSS-----IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISA  206 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSTTCS-----CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcCCC-----cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHH
Confidence            2223333344445678888999998544332     35899999999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy6107         154 DPFPL  158 (161)
Q Consensus       154 ~a~~i  158 (161)
                      +|+++
T Consensus       207 ~~~~i  211 (223)
T 1orq_C          207 LTLLI  211 (223)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.95  E-value=9.9e-29  Score=206.21  Aligned_cols=152  Identities=23%  Similarity=0.389  Sum_probs=110.4

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhc-------hhhHHHHHHHHHHHHHHHHHHH---HHHH---
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRT-------WIGLRFLRALRLMTVPDILQYL---NILK---   68 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~-------~~~~~~lr~lRl~rl~r~~~~~---~~l~---   68 (161)
                      +|+++|++++++|++|++++||++|+++++|+++.+.....       ...++.+|++|++|++|++|+.   +.++   
T Consensus       254 iE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~  333 (514)
T 2r9r_B          254 FEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILG  333 (514)
T ss_dssp             HHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            69999999999999999999999999999999987765321       1113444444444444444432   2222   


Q ss_pred             HhH--H-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHH
Q psy6107          69 TSS--S-IRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVF  145 (161)
Q Consensus        69 ~~~--~-~~~~~l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~  145 (161)
                      ...  + .++..++++.+..+.++|++.|..|+..++.++     .++.+|+||+++|+||+||||+.|.|+.||+++++
T Consensus       334 ~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F-----~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~  408 (514)
T 2r9r_B          334 QTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQF-----PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSL  408 (514)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSC-----SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCccc-----cchhhhhheeeeEEEecccCCCCCCCcchHhhehh
Confidence            111  1 122222222333355778888888886554444     47889999999999999999999999999999999


Q ss_pred             HHHHhhhhccccc
Q psy6107         146 FLLVGLVSDPFPL  158 (161)
Q Consensus       146 ~~l~g~~~~a~~i  158 (161)
                      +|+.|++++++++
T Consensus       409 ~~l~G~~~l~l~i  421 (514)
T 2r9r_B          409 CAIAGVLTIALPV  421 (514)
T ss_dssp             HHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.95  E-value=8.6e-29  Score=197.76  Aligned_cols=150  Identities=17%  Similarity=0.155  Sum_probs=116.6

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhh-hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTI-PPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSS---SIRLAQ   77 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~-~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~---~~~~~~   77 (161)
                      +|+.+|++++++|.+|+++++|++|++++ +|++....  ...+.+|++|++|++|+.|..+.++.+....   ..++..
T Consensus        54 ~e~~~r~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~~~--~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~  131 (355)
T 3beh_A           54 LQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLL--DGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIG  131 (355)
T ss_dssp             HHHHHHHHCCCSCSSCCCHHHHHHHHHHHHHHHHHHHS--CCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHhcccccccceeccCcchHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999 68766432  2233456666666666666666666555432   233344


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107          78 LVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP  157 (161)
Q Consensus        78 l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~  157 (161)
                      ++.+.+.+++++|+.+|.+|++.+|+.+     .+|.+|+||+++|+||+||||++|.|+.||++++++|+.|+++++++
T Consensus       132 ~~~~~~~~~~~~a~~~~~~e~~~~~~~f-----~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~  206 (355)
T 3beh_A          132 VTTLFGVVLFAVALAAYVIERDIQPEKF-----GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLW  206 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCHHHH-----SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccc-----ccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            4444555667899999999987655432     47899999999999999999999999999999999999999999987


Q ss_pred             c
Q psy6107         158 L  158 (161)
Q Consensus       158 i  158 (161)
                      +
T Consensus       207 ~  207 (355)
T 3beh_A          207 A  207 (355)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.91  E-value=3.5e-25  Score=158.26  Aligned_cols=115  Identities=21%  Similarity=0.268  Sum_probs=63.9

Q ss_pred             hhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCC
Q psy6107          22 YSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRL-AQLVSIFISVWLTAAGIIHLLENSG  100 (161)
Q Consensus        22 ~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~~~~-~~l~~~~~~~~~~~a~~~~~~e~~~  100 (161)
                      .+++|+++++|+            +|.+|++|++|++ +.|.    ......+. ...+...+..++.++.++|..|+..
T Consensus        15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~----~~~l~~~~~~~~~~~~~~~i~~~a~~~~~~E~~~   77 (155)
T 2a9h_A           15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRH----GSALHWRAAGAATVLLVIVLLAGSYLAVLAERGA   77 (155)
T ss_dssp             ------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            378999999997            3555555555555 2222    11111111 1222233344567888899999865


Q ss_pred             CCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         101 DPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       101 ~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +++.     ..+|.||+||+++|+|||||||++|+|+.||++++++++.|++++|+++
T Consensus        78 ~~~~-----~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~  130 (155)
T 2a9h_A           78 PGAA-----LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVF  130 (155)
T ss_dssp             SCSS-----TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc-----cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            4332     2589999999999999999999999999999999999999999999875

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.89  E-value=1.8e-23  Score=143.94  Aligned_cols=72  Identities=26%  Similarity=0.395  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      .+.+++.++..+|..|++.+++     +..+|.||+||+++|+||+||||++|+|+.||++++++++.|+.++++++
T Consensus        36 ~~~~~~~~a~~~~~~E~~~~~~-----~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~  107 (122)
T 2ih3_C           36 LVIVLLAGSYLAVLAERGAPGA-----QLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVT  107 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTC-----CCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhheeeecCCCC-----ccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            3344557788899999865432     23689999999999999999999999999999999999999999998875

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.83  E-value=7.5e-22  Score=153.43  Aligned_cols=148  Identities=17%  Similarity=0.230  Sum_probs=101.9

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSS---IRLAQL   78 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~---~~~~~l   78 (161)
                      +|+++|+++++  ++|++++||++|+++++|.++..  .+....+|++|++|++|+.|..+.++.+.....   ..+...
T Consensus        76 ~E~~lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~--~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~  151 (285)
T 3rvy_A           76 IEIILRIYVHR--ISFFKDPWSLFDFFVVAISLVPT--SSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSV  151 (285)
T ss_dssp             HHHHHHHHTTG--GGGGGCHHHHHHHHHHHHHHSCS--SSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHHHHHHHh--HHHHcCChHHhHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999998  78999999999999999876542  122223444444444444444444444333221   122333


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccc-ccc-ccccch----hHHHHHHHHHhhh
Q psy6107          79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYG-DVY-CQTILG----RTFLVFFLLVGLV  152 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYG-Di~-P~t~~~----ri~~~~~~l~g~~  152 (161)
                      ..+...++..+|...+..+++.+|++|     .++.+|+||+.+|+||+||| |+. |.+..|    +.++.+.++.|++
T Consensus       152 ~~~~~~~~~~fa~~g~~~f~~~~~~~F-----~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~  226 (285)
T 3rvy_A          152 IALMTLFFYIFAIMATQLFGERFPEWF-----GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFV  226 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHH-----SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccccccc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHH
Confidence            334444455677777777776555433     47789999999999999999 985 888765    7888999999999


Q ss_pred             hccccc
Q psy6107         153 SDPFPL  158 (161)
Q Consensus       153 ~~a~~i  158 (161)
                      ++++|+
T Consensus       227 ~lnl~~  232 (285)
T 3rvy_A          227 MINLVV  232 (285)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.78  E-value=4e-19  Score=118.71  Aligned_cols=75  Identities=23%  Similarity=0.209  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +...+..++.++..++..|+..+++     +..+|.||+||+++|+|||||||++|+|+.||++++++++.|+.++++.+
T Consensus        12 ~~~~~~~~~~~a~~~~~~E~~~~~~-----~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~   86 (103)
T 2k1e_A           12 EEELQKVLEEASKKAVEAERGAPGA-----ALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVT   86 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTC-----CCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCCc-----ccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            3344455667888999999865432     23589999999999999999999999999999999999999999998765

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.75  E-value=1.1e-18  Score=122.31  Aligned_cols=70  Identities=26%  Similarity=0.404  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +..++.+.+++++.+++.|.+          .++|.||+||+++|+|||||||++|.|+.||++++++|+.|++++|+++
T Consensus        20 l~~~~~~~~~~~~~~~~~e~~----------~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~   89 (137)
T 4h33_A           20 LMIFVLLVIIIPVPMVFIEPE----------INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMIT   89 (137)
T ss_dssp             HHHHHHHHHHTHHHHHHHCSS----------CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            334444455677777777753          1479999999999999999999999999999999999999999999875

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.75  E-value=1.8e-18  Score=121.29  Aligned_cols=75  Identities=27%  Similarity=0.429  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +...+..++++++.++..|++.+++     ...+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++++
T Consensus        12 ~~~~~~~~~~~a~~~~~~e~~~~~~-----~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~   86 (139)
T 3eff_K           12 TVLLVIVLLAGSYLAVLAERGAPGA-----QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT   86 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCTTC-----CCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCc-----ccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            3444455667888899999865432     23689999999999999999999999999999999999999999998765

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.73  E-value=8.7e-18  Score=114.13  Aligned_cols=48  Identities=29%  Similarity=0.476  Sum_probs=45.5

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++|.||+||+++|+||+||||++|+|+.||++++++++.|+.+++..+
T Consensus        48 ~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~   95 (114)
T 2q67_A           48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFI   95 (114)
T ss_dssp             CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999999999999988765

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.73  E-value=4.9e-18  Score=108.86  Aligned_cols=69  Identities=26%  Similarity=0.476  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcccc
Q psy6107          78 LVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFP  157 (161)
Q Consensus        78 l~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~  157 (161)
                      ++.+++..+...+..++..|+            +++.||+||+++|+||+||||++|+|+.||+++++.++.|+.++++.
T Consensus         6 ~~~l~~~~~~~g~~~~~~~e~------------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~   73 (82)
T 3ldc_A            6 ILLLVLAVIIYGTAGFHFIEG------------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVA   73 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            334444555567777778886            48999999999999999999999999999999999999999999876


Q ss_pred             c
Q psy6107         158 L  158 (161)
Q Consensus       158 i  158 (161)
                      +
T Consensus        74 ~   74 (82)
T 3ldc_A           74 V   74 (82)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.71  E-value=2.4e-17  Score=124.25  Aligned_cols=144  Identities=16%  Similarity=0.261  Sum_probs=85.9

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILKTSSS---IRLAQL   78 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~~~~~---~~~~~l   78 (161)
                      +|+++|++++++|++|++++||++|+++++|..+....+.....+|.+|++|++|+.|..+.++.+.+...   .++..+
T Consensus        57 ~E~~lri~~~~~~~~y~~~~wni~D~~~v~~~~i~~~~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~  136 (229)
T 4dxw_A           57 IEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFV  136 (229)
T ss_dssp             HHHHHHHHC---------CHHHHHHHHHHHHTTCC--------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCchhHHhcCCcHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999998887654322222233466666666666666665555444322   223333


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccc----cccchhHHHHHHHHHh
Q psy6107          79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYC----QTILGRTFLVFFLLVG  150 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P----~t~~~ri~~~~~~l~g  150 (161)
                      ..+...++..+|...+..+++.+|++++     ++.+|+++...++|+.|++|+-.    .++.+.++-+..+++|
T Consensus       137 ~~~l~~~~~ifa~~g~~lf~~~~~~~F~-----~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~  207 (229)
T 4dxw_A          137 SLLLFIILYIYATMGAILFGNDDPSRWG-----DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIIC  207 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTSCTTTS-----SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCccccc-----CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            3444444557788778888777776564     66789999999999999999722    2344555544444443

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.69  E-value=5.6e-17  Score=114.86  Aligned_cols=48  Identities=29%  Similarity=0.483  Sum_probs=45.3

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      .+|.||+||+++|+|||||||++|.|+.||+++++++++|+++++..+
T Consensus        51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~   98 (148)
T 3vou_A           51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFI   98 (148)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999988654

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.66  E-value=9.6e-17  Score=105.97  Aligned_cols=48  Identities=33%  Similarity=0.562  Sum_probs=45.1

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      .+|.||+||+++|+|||||||++|+|+.||+++++.++.|+.+++..+
T Consensus        31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i   78 (97)
T 3ouf_A           31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFI   78 (97)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999887654

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.59  E-value=2.3e-17  Score=118.96  Aligned_cols=69  Identities=29%  Similarity=0.441  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          85 VWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        85 ~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +++.+++++|..|++.+++     ...+|.||+||+++|+|||||||++|.|+.||+++++++++|++++++++
T Consensus        45 ~~~~~a~~~~~~e~~~~~~-----~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~  113 (166)
T 3pjs_K           45 VLLAGSYLAVLAERGAPGA-----QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVT  113 (166)
T ss_dssp             TTTTTSSSSSSTTSSSTTC-----CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCc-----ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            3446677788888765322     23689999999999999999999999999999999999999999998865

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.59  E-value=1.5e-15  Score=118.88  Aligned_cols=75  Identities=19%  Similarity=0.241  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          79 VSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +..++.+++++|++++..+...     .+....++.+|+||+++|+|||||||++|.++.||+++++.++.|++++|+++
T Consensus        54 ~~~~~~~~l~fa~ly~~~~~~~-----~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~  128 (301)
T 1xl4_A           54 TGLYLVTNALFALAYLACGDVI-----ENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA  128 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCS-----TTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccc-----CCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555667888854444221     12223689999999999999999999999999999999999999999999875

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.57  E-value=2.8e-15  Score=118.69  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++.+++++|.+ |+.|++..    .+....+|.+|+||+++|+|||||||++|.|+.||+++++++++|++++|+++
T Consensus        71 ~l~~~l~fall-y~~e~~~~----~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~i  142 (333)
T 1p7b_A           71 FVVNNTLFALL-YQLGDAPI----ANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST  142 (333)
T ss_dssp             HHHHHHHHHTT-TSSSSSCC----CCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHhcccc----cCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455554 66665422    22223589999999999999999999999999999999999999999998865

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.56  E-value=7.5e-15  Score=115.79  Aligned_cols=72  Identities=24%  Similarity=0.319  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++..++++|  +++.|++...   ++....+|.+|+||+++|+|||||||++|.|+.||++++++++.|++++|+++
T Consensus        53 ~~~~~~~fa--~~~~eg~~~~---~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~  124 (321)
T 2qks_A           53 FLLLNTAFA--TLYMLGSAPI---ANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALAT  124 (321)
T ss_dssp             HHHHHHHHH--HHHHTSSSCB---TTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHcCCccc---cCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666  3356654322   22222489999999999999999999999999999999999999999999875

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.50  E-value=3e-14  Score=111.54  Aligned_cols=50  Identities=30%  Similarity=0.489  Sum_probs=46.3

Q ss_pred             ccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         109 QQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       109 ~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +.++|.||+||+++|+|||||||++|.|+.||+++++.+++|+.++++.+
T Consensus       112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~  161 (309)
T 3um7_A          112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILL  161 (309)
T ss_dssp             -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999988765

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.45  E-value=9.5e-14  Score=107.28  Aligned_cols=52  Identities=19%  Similarity=0.388  Sum_probs=46.2

Q ss_pred             CcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         107 NPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       107 ~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +.+.+++.||+||+++|+|||||||++|.|+.||+++++.+++|+.++++.+
T Consensus        88 ~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~  139 (280)
T 3ukm_A           88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFL  139 (280)
T ss_dssp             --CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            3445899999999999999999999999999999999999999998877644

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.39  E-value=4.5e-13  Score=103.52  Aligned_cols=61  Identities=25%  Similarity=0.457  Sum_probs=51.6

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccc-------hhHHHHHHHHHhhhhccccc
Q psy6107          87 LTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTIL-------GRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        87 ~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~-------~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++.+..++..|.+           ++|.||+||+++|+|||||||++|.++.       +|++++++++.|+++++..+
T Consensus       187 ~~ga~~~~~~E~~-----------~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~  254 (280)
T 3ukm_A          187 FIPAAVFSVLEDD-----------WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVL  254 (280)
T ss_dssp             HHHHHHHHHHSSS-----------CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcC-----------CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666731           5899999999999999999999999996       59999999999999988765

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=99.39  E-value=8.1e-13  Score=104.62  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHhhh---cCCCC---CCCC--CcccchhhhhHhhhhhheecccccccccc--ccchhHHHHHHHH
Q psy6107          79 VSIFISVWLTAAGIIHLLE---NSGDP---FEFN--NPQQLSYWTCVYFLIVTMSTVGYGDVYCQ--TILGRTFLVFFLL  148 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~e---~~~~~---~~~~--~~~~~~~~~slyf~~~TltTvGYGDi~P~--t~~~ri~~~~~~l  148 (161)
                      ...++..++++|.++|.+-   ++.+.   ++.+  -....++.+|+||+++|+|||||||++|.  ++.|++++.+.++
T Consensus        50 ~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l  129 (340)
T 3sya_A           50 VMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSV  129 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHH
Confidence            3446667888999888642   22211   1110  01225899999999999999999999997  6889999999999


Q ss_pred             Hhhhhccccc
Q psy6107         149 VGLVSDPFPL  158 (161)
Q Consensus       149 ~g~~~~a~~i  158 (161)
                      +|+++.|+|+
T Consensus       130 ~G~~l~a~~~  139 (340)
T 3sya_A          130 LGSIVNAFMV  139 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.37  E-value=3.4e-13  Score=105.59  Aligned_cols=59  Identities=31%  Similarity=0.499  Sum_probs=51.2

Q ss_pred             HHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhH------HHHHHHHHhhhhccccc
Q psy6107          88 TAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRT------FLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        88 ~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri------~~~~~~l~g~~~~a~~i  158 (161)
                      ..+..++..|+            ++|.||+||+++|+|||||||++|.++.||.      +++++++.|++++++++
T Consensus       212 ~ga~~~~~~E~------------~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~  276 (309)
T 3um7_A          212 TPTFVFCYMED------------WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVL  276 (309)
T ss_dssp             HHHHHHHHHHC------------CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC------------CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            44555666663            5899999999999999999999999999984      99999999999998765

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=99.36  E-value=1.9e-12  Score=102.61  Aligned_cols=80  Identities=25%  Similarity=0.328  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHhh---hcCC----CCCCCCC--cccchhhhhHhhhhhheecccccccccc--ccchhHHHHHHH
Q psy6107          79 VSIFISVWLTAAGIIHLL---ENSG----DPFEFNN--PQQLSYWTCVYFLIVTMSTVGYGDVYCQ--TILGRTFLVFFL  147 (161)
Q Consensus        79 ~~~~~~~~~~~a~~~~~~---e~~~----~~~~~~~--~~~~~~~~slyf~~~TltTvGYGDi~P~--t~~~ri~~~~~~  147 (161)
                      ...++..++++|.++|.+   +++-    ++++++.  .+..++.+|+||+++|+||+||||++|.  ++.|++++.+.+
T Consensus        52 ~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~  131 (343)
T 3spc_A           52 SLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQS  131 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHH
Confidence            345666788899888864   2221    1111110  1236899999999999999999999974  899999999999


Q ss_pred             HHhhhhccccc
Q psy6107         148 LVGLVSDPFPL  158 (161)
Q Consensus       148 l~g~~~~a~~i  158 (161)
                      +.|++++|+++
T Consensus       132 l~G~~l~a~~~  142 (343)
T 3spc_A          132 IVGCIIDSFMI  142 (343)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.35  E-value=5.4e-13  Score=112.12  Aligned_cols=48  Identities=25%  Similarity=0.481  Sum_probs=45.3

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++|.+|+||+++|+|||||||++|.|+.||++++++++.|+.++++.+
T Consensus        50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~   97 (565)
T 4gx0_A           50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIIL   97 (565)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999999999999988764

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.34  E-value=1.7e-14  Score=114.04  Aligned_cols=48  Identities=33%  Similarity=0.528  Sum_probs=45.4

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++|.+|+||+++|+||+||||++|.|+.||++++++++.|+.++++.+
T Consensus        44 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~   91 (336)
T 1lnq_A           44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAV   91 (336)
T ss_dssp             CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHH
T ss_pred             CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999998765

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=99.29  E-value=1.3e-12  Score=90.66  Aligned_cols=61  Identities=18%  Similarity=0.274  Sum_probs=42.9

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYL   64 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~   64 (161)
                      +||++|++++|+|++|++  ||++|+++++|+++....++....+|.+|++|++|++|+.|..
T Consensus        52 ~E~~lRl~~~~~~~~y~~--~niiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~  112 (132)
T 1ors_C           52 ADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLII  112 (132)
T ss_dssp             HHHHHHHHHTTSTTTTTT--TCGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence            699999999999999999  8999999999998876652112223344444444444444433

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=99.18  E-value=8e-12  Score=88.14  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILK   68 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~   68 (161)
                      +||++|+++||+|++|+++  ||+|+++++|++......   ++++++|++|++|++|+.|..+..+
T Consensus        67 ~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~r~~~  128 (147)
T 2kyh_A           67 ADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLIIS  128 (147)
T ss_dssp             HHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999998  999999999998776542   2456666666666666665555444

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=93.69  E-value=0.064  Score=46.24  Aligned_cols=44  Identities=14%  Similarity=0.290  Sum_probs=34.1

Q ss_pred             chhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhcc
Q psy6107         111 LSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDP  155 (161)
Q Consensus       111 ~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a  155 (161)
                      .++.+++|+++.+++..| ++..|.+..+|++..+|++.++++.+
T Consensus       562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~  605 (823)
T 3kg2_A          562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIIS  605 (823)
T ss_dssp             HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHH
Confidence            357799999999999999 78999999999999999999988764

>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}

Probab=88.52  E-value=0.024  Score=27.49  Aligned_cols=23  Identities=74%  Similarity=1.468  Sum_probs=15.9

Q ss_pred             HHHHHhhhchhhHHHHHHHHHHH
Q psy6107          34 FVSIYLDRTWIGLRFLRALRLMT   56 (161)
Q Consensus        34 ~~~~~~~~~~~~~~~lr~lRl~r   56 (161)
                      ++......++.++|++|.+|++-
T Consensus         3 fv~~yL~~~wlgLRFLRALRlm~   25 (28)
T 2k44_A            3 FVSVYLNRSWLGLRFLRALRLIQ   25 (28)
T ss_dssp             SSHHHHHHHHHHSTTCTTHHHHS
T ss_pred             eeEeeeccchHHHHHHHHHHccc
Confidence            34445566677788888888764

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=86.39  E-value=0.58  Score=32.22  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhH
Q psy6107          49 LRALRLMTVPDILQYLNILKTSS   71 (161)
Q Consensus        49 lr~lRl~rl~r~~~~~~~l~~~~   71 (161)
                      +|.+|++|+.|+.|..+..+...
T Consensus       106 lr~lRvlRllRv~Rllrl~r~~~  128 (147)
T 2kyh_A          106 LAGLGLFRLVRLLRFLRILLIIS  128 (147)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777777766544

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=84.61  E-value=2.2  Score=28.47  Aligned_cols=17  Identities=12%  Similarity=0.110  Sum_probs=10.8

Q ss_pred             hhhHHHHHhhhhHHHHH
Q psy6107          21 MYSFVDYFTIPPSFVSI   37 (161)
Q Consensus        21 ~~~iiDl~~~~P~~~~~   37 (161)
                      ....+|.+...=|.++.
T Consensus        38 ~l~~~d~~~~~iFt~E~   54 (132)
T 1ors_C           38 RLYLVDLILVIILWADY   54 (132)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            35567777777665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	161
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	3e-06
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	5e-05
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	2e-04
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	0.001

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 41.5 bits (97), Expect = 3e-06
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 75  LAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYC 134
                 + + V L  + +  L E      +       +Y   +++ + T +TVGYGD+Y 
Sbjct: 8   AGAATVLLVIVLLAGSYLAVLAERGAPGAQLI-----TYPRALWWSVETATTVGYGDLYP 62

Query: 135 QTILGRTFLVFFLLVGLV 152
            T+ GR   V  ++ G+ 
Sbjct: 63  VTLWGRCVAVVVMVAGIT 80

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 78  LVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTI 137
           ++ + ++V +      H +E              S+   +Y+  VT++TVGYGD    T 
Sbjct: 5   ILLLVLAVIIYGTAGFHFIEG------------ESWTVSLYWTFVTIATVGYGDYSPSTP 52

Query: 138 LGRTFLVFFLLVGLV 152
           LG  F V  +++G+ 
Sbjct: 53  LGMYFTVTLIVLGIG 67

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 63  YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
           Y ++L  S  + +  +  +++      A                N +  S+    +F + 
Sbjct: 16  YHDLLTVSWPVFITLITGLYLVTNALFALAYLACG-----DVIENARPGSFTDAFFFSVQ 70

Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
           TM+T+GYG +     L  T +    L G++      
Sbjct: 71  TMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 106

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 63  YLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIV 122
           Y   LK S  +  A L ++F+      A +  L +               +    +F + 
Sbjct: 17  YYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPP-----GFVGAFFFSVE 71

Query: 123 TMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL 158
           T++TVGYGD++ QT+         + VG+       
Sbjct: 72  TLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.82
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.71
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.71
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.62
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	99.32
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.22
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	85.98

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.82  E-value=1.6e-20  Score=123.96  Aligned_cols=71  Identities=27%  Similarity=0.451  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          83 ISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        83 ~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      +..++.++..+|..|++.+++.+     .+|.||+||+++|+|||||||++|+|+.||+++++.|+.|+.++++++
T Consensus        16 ~~~~~~~s~~~~~~e~~~~~~~~-----~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~   86 (103)
T d1r3jc_          16 VIVLLAGSYLAVLAERGAPGAQL-----ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVT   86 (103)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCCC-----CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCccc-----CchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence            33455778888999987665544     368899999999999999999999999999999999999999998765

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.71  E-value=7.9e-18  Score=112.99  Aligned_cols=72  Identities=19%  Similarity=0.245  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      .+.+++.++..++..++..+     +.+..+|.||+||+++|+||+||||++|+|+.||++++++++.|++++|+++
T Consensus        35 ~~~~~~~fa~~y~~~~~~~~-----~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~  106 (116)
T d1xl4a2          35 YLVTNALFALAYLACGDVIE-----NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA  106 (116)
T ss_dssp             HHHHHHHHHHHHHHTCSCST-----TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCC-----CCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            33444456665555443222     2223589999999999999999999999999999999999999999998764

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.71  E-value=7e-18  Score=113.28  Aligned_cols=72  Identities=22%  Similarity=0.336  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          82 FISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        82 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++.+.+.+|..++ .|++..    ++.+..+|.||+||+++|+|||||||++|+++.||+++++.++.|++++|+++
T Consensus        36 ~~~~~~~fa~~y~-~~~~~~----~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~  107 (116)
T d1p7ba2          36 FVVNNTLFALLYQ-LGDAPI----ANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALST  107 (116)
T ss_dssp             HHHHHHHHHTTTS-SSSSCC----CCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-Hhhccc----CCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555554 333222    22223589999999999999999999999999999999999999999998754

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.62  E-value=2.5e-17  Score=103.58  Aligned_cols=61  Identities=30%  Similarity=0.482  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheeccccccccccccchhHHHHHHHHHhhhhccccc
Q psy6107          86 WLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGYGDVYCQTILGRTFLVFFLLVGLVSDPFPL  158 (161)
Q Consensus        86 ~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGYGDi~P~t~~~ri~~~~~~l~g~~~~a~~i  158 (161)
                      ++.++..++..|+            +++.||+||+++|+||+||||++|+|+.||+++++.++.|+.++++.+
T Consensus        13 ~~~g~~~~~~~e~------------~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i   73 (80)
T d1lnqa2          13 IIYGTAGFHFIEG------------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAV   73 (80)
T ss_dssp             HHHHTTTTTTSSS------------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHH
T ss_pred             HHHHHHHHHHHhC------------CCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            3345555666653            478999999999999999999999999999999999999999998764

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.32  E-value=1.5e-12  Score=75.44  Aligned_cols=44  Identities=20%  Similarity=0.278  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCcccchhhhhHhhhhhheecccc
Q psy6107          81 IFISVWLTAAGIIHLLENSGDPFEFNNPQQLSYWTCVYFLIVTMSTVGY  129 (161)
Q Consensus        81 ~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~~slyf~~~TltTvGY  129 (161)
                      +...++++++.++|+.|++.+++.+++.     .||+||+++|+|||||
T Consensus        14 ~~~i~i~~~s~~~y~~E~~~~~~~f~si-----p~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          14 LLVIVLLAGSYLAVLAERGAPGAQLITY-----PRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCCCCSH-----HHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccccc-----chhhhhheeeeecccC
Confidence            3334456789999999999888777654     5899999999999998

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.22  E-value=2.5e-12  Score=87.57  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             ceehhhHhcccchhhhhcchhhHHHHHhhhhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6107           2 VYYFIRFIAASDKLWFMLEMYSFVDYFTIPPSFVSIYLDRTWIGLRFLRALRLMTVPDILQYLNILK   68 (161)
Q Consensus         2 ~e~~~r~~~a~~~~~y~~~~~~iiDl~~~~P~~~~~~~~~~~~~~~~lr~lRl~rl~r~~~~~~~l~   68 (161)
                      .||++|++++|+|.+|.++  ||+|+++++|.++....++..+.+|.+|++|++|++|+.+..+..+
T Consensus        52 ~E~~lrl~~~~~~~~~~~~--~~iDl~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~~~  116 (132)
T d1orsc_          52 ADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS  116 (132)
T ss_dssp             HHHHHHHHHTTSTTTTTTT--CGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccceeCCc--chHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999875  8999999999998877777666677777777777777776665544

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.98  E-value=1.2  Score=28.18  Aligned_cols=26  Identities=31%  Similarity=0.352  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6107          46 LRFLRALRLMTVPDILQYLNILKTSS   71 (161)
Q Consensus        46 ~~~lr~lRl~rl~r~~~~~~~l~~~~   71 (161)
                      .+.+|.+|++|+.|+.|..+..++..
T Consensus        91 ~~~lr~lR~~R~~R~lrl~~~~~~~~  116 (132)
T d1orsc_          91 LAGLGLFRLVRLLRFLRILLIISRGS  116 (132)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666655443