Psyllid ID: psy610

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MCPLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEISKTPPKKLNTYTILPSLV
Secondary Structure (PSIPRED)
cccEEEHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccEccccccccHHHHHHHHHHHHHHHHHcccccEEEEEccccEccccccHEEEEHHHHHHHccccccccccccccccEcccccc
Coil and Loop (DISEMBL)
mcplffcpqhanNVRRYAEEHMAKRQAQGKDVHSIAISvlnlppvkhlpgakpgtffardnvsnfigwsrrglGVFECLLFETDDLIMRKNEKHVILCLLEIIsgekfeisktppkklntytilpslv
Flexible Loop (DISEMBL)
MCPLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISgekfeisktppkklntytilpslv
Low Complexity Region (SEG)
MCPLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEISKTPPKKLNTYTILPSLV
Disordered region (IsUnstruct)
***LFFCPQHANNVRRY*************DVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEI******************
Disordered Region (DISOPRED)
MCPLFFCPQHANNVRRYAEEHM****************************AK*GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEISKTPPKKLNTYTILPSLV
Disordered Region (DISEMBL)
MCPLFFCPQHANNVRRYAE************VHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEISKTPPKKLNTYTILPSLV
Disordered Region (DISPRO)
MCPLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEISKTPPKKLNTYTIL**L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCPLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIISGEKFEISKTPPKKLNTYTILPSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q8NHY3	880	GAS2-like protein 2 OS=Ho	yes	N/A	0.718	0.104	0.464	2e-15
Q8JZP9	678	GAS2-like protein 1 OS=Mu	no	N/A	0.390	0.073	0.68	2e-14
Q99501	681	GAS2-like protein 1 OS=Ho	no	N/A	0.390	0.073	0.68	3e-14
Q5SSG4	860	GAS2-like protein 2 OS=Mu	no	N/A	0.414	0.061	0.622	4e-14
Q86XJ1	694	GAS2-like protein 3 OS=Ho	no	N/A	0.453	0.083	0.467	2e-09
Q3UWW6	683	GAS2-like protein 3 OS=Mu	no	N/A	0.453	0.084	0.467	2e-09
P11862	314	Growth arrest-specific pr	no	N/A	0.453	0.184	0.483	3e-09
O43903	313	Growth arrest-specific pr	no	N/A	0.453	0.185	0.483	3e-09

>sp|Q8NHY3|GA2L2_HUMAN GAS2-like protein 2 OS=Homo sapiens GN=GAS2L2 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 7/99 (7%)

Query: 4   LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           L  C QHAN V   A   +A+  AQ + +    + V           A+PGTF ARDNVS
Sbjct: 63  LVLC-QHANVVTDAALAFLAEAPAQAQKIPMPRVGV------SCNGAAQPGTFQARDNVS 115

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
           NFI W R+ +G+ E L+FET+DL++RKN K+V+LCLLE+
Sbjct: 116 NFIQWCRKEMGIQEVLMFETEDLVLRKNVKNVVLCLLEL 154

Seems to be involved in the cross-linking of microtubules and microfilaments.
Homo sapiens (taxid: 9606)

>sp|Q8JZP9|GA2L1_MOUSE GAS2-like protein 1 OS=Mus musculus GN=Gas2l1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 43/50 (86%)

Query: 53  PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
           PG+F ARDNV++FIGW R  LGV E L+FET+DL++RKNEK V+LCLLE+
Sbjct: 94  PGSFMARDNVASFIGWCRAELGVPEVLMFETEDLVLRKNEKSVVLCLLEV 143

Seems to be involved in the cross-linking of microtubules and microfilaments.

Mus musculus (taxid: 10090)

>sp|Q99501|GA2L1_HUMAN GAS2-like protein 1 OS=Homo sapiens GN=GAS2L1 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 42/50 (84%)

Query: 53  PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
           PG+F ARDNV+ FIGW R  LGV E L+FET+DL++RKNEK V+LCLLE+
Sbjct: 94  PGSFMARDNVATFIGWCRVELGVPEVLMFETEDLVLRKNEKSVVLCLLEV 143

Seems to be involved in the cross-linking of microtubules and microfilaments.

Homo sapiens (taxid: 9606)

>sp|Q5SSG4|GA2L2_MOUSE GAS2-like protein 2 OS=Mus musculus GN=Gas2l2 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 44/53 (83%)

Query: 50  GAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
            A+PGTF ARDN+SNFI W R+ +G+ E L+FET+DL++RKN K V+LCLLE+
Sbjct: 102 AAQPGTFQARDNISNFIQWCRKEMGIQEVLMFETEDLVLRKNVKSVVLCLLEL 154

Seems to be involved in the cross-linking of microtubules and microfilaments.

Mus musculus (taxid: 10090)

>sp|Q86XJ1|GA2L3_HUMAN GAS2-like protein 3 OS=Homo sapiens GN=GAS2L3 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 4/62 (6%)

Query: 44  PVKHLP---GAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLL 100
           P++ +P    A  G+FFARDN +NF+ W R  +GV E  LFE++ L++ K+ + V LCLL
Sbjct: 104 PMRKVPCKKDAASGSFFARDNTANFLHWCR-DIGVDETYLFESEGLVLHKDPRQVYLCLL 162

Query: 101 EI 102
           EI
Sbjct: 163 EI 164

Homo sapiens (taxid: 9606)

>sp|Q3UWW6|GA2L3_MOUSE GAS2-like protein 3 OS=Mus musculus GN=Gas2l3 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 4/62 (6%)

Query: 44  PVKHLP---GAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLL 100
           P++ +P    A  G+FFARDN +NF+ W R  +GV E  LFE++ L++ K+ + V LCLL
Sbjct: 106 PMRKVPCKKDAASGSFFARDNTANFLHWCRH-IGVDETYLFESEGLVLHKDPRQVYLCLL 164

Query: 101 EI 102
           EI
Sbjct: 165 EI 166

Mus musculus (taxid: 10090)

>sp|P11862|GAS2_MOUSE Growth arrest-specific protein 2 OS=Mus musculus GN=Gas2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 44  PVKHLP---GAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLL 100
           P+K +P    A  G+FFARDN +NF+ W R  LGV E  LFE++ L++ K  + V LCLL
Sbjct: 93  PLKKIPCKASAPSGSFFARDNTANFLSWCR-DLGVDETCLFESEGLVLHKQPREVCLCLL 151

Query: 101 EI 102
           E+
Sbjct: 152 EL 153

May play a role in apoptosis by acting as a cell death substrate for caspases. Is cleaved during apoptosis and the cleaved form induces dramatic rearrangements of the actin cytoskeleton and potent changes in the shape of the affected cells. May play a role in chondrocyte proliferation and differentiation, and in limb myogenesis. May be involved in the regulation of the apoptosis in the interdigital tissues of the developing hindlimb. May be involved in the membrane ruffling process.

Mus musculus (taxid: 10090)

>sp|O43903|GAS2_HUMAN Growth arrest-specific protein 2 OS=Homo sapiens GN=GAS2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 44  PVKHLP---GAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLL 100
           P+K +P    A  G+FFARDN +NF+ W R  LGV E  LFE++ L++ K  + V LCLL
Sbjct: 92  PLKKIPCKTSAPSGSFFARDNTANFLSWCR-DLGVDETCLFESEGLVLHKQPREVCLCLL 150

Query: 101 EI 102
           E+
Sbjct: 151 EL 152

May play a role in apoptosis by acting as a cell death substrate for caspases. Is cleaved during apoptosis and the cleaved form induces dramatic rearrangements of the actin cytoskeleton and potent changes in the shape of the affected cells. May be involved in the membrane ruffling process.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
328719496	810	PREDICTED: hypothetical protein LOC10016	0.734	0.116	0.747	2e-34
328777757	921	PREDICTED: hypothetical protein LOC41158	0.781	0.108	0.613	2e-28
350407389	901	PREDICTED: hypothetical protein LOC10074	0.781	0.110	0.613	5e-28
383856084	901	PREDICTED: uncharacterized protein LOC10	0.781	0.110	0.613	6e-28
195565456	1691	GD16809 [Drosophila simulans] gi|1942036	0.781	0.059	0.594	2e-27
195047563	993	GH24710 [Drosophila grimshawi] gi|193893	0.781	0.100	0.603	2e-27
195397247	960	GJ16981 [Drosophila virilis] gi|19414700	0.781	0.104	0.603	3e-27
195469984	976	GE16760 [Drosophila yakuba] gi|194187439	0.781	0.102	0.594	3e-27
194896347	979	GG19600 [Drosophila erecta] gi|190650110	0.781	0.102	0.594	3e-27
195447060	985	GK25585 [Drosophila willistoni] gi|19416	0.781	0.101	0.594	3e-27

>gi|328719496|ref|XP_001943028.2| PREDICTED: hypothetical protein LOC100162040 [Acyrthosiphon pisum]

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/95 (74%), Positives = 80/95 (84%), Gaps = 1/95 (1%)

Query: 9   QHANNVRRYAEEHMAKRQAQGK-DVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIG 67
           +H+N VR YAEEH+ +RQA GK ++  IA  VL LP V++LPGAK GTFFARDNVSNFI 
Sbjct: 57  KHSNCVRNYAEEHVNRRQAAGKSNISGIASIVLQLPAVRYLPGAKGGTFFARDNVSNFIN 116

Query: 68  WSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
           W R GLGVFECLLFETDDLIMRKNEKHVILCLLE+
Sbjct: 117 WCRNGLGVFECLLFETDDLIMRKNEKHVILCLLEV 151

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777757|ref|XP_395056.4| PREDICTED: hypothetical protein LOC411586 [Apis mellifera]

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HANNVR+ A E++A+RQA+   +      S+A+ +  L  V  LP AK GTFFARDNVS
Sbjct: 57  KHANNVRKSAAEYVARRQARKISMTRSMTSSLAVPMSQLSDVAFLPNAKAGTFFARDNVS 116

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFIGW R  LG+ ECLLFETDDLIMRKNE+HVILCLLE+   G KF
Sbjct: 117 NFIGWCRNSLGIIECLLFETDDLIMRKNERHVILCLLEVARRGAKF 162

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407389|ref|XP_003488073.1| PREDICTED: hypothetical protein LOC100740651 [Bombus impatiens]

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HANNVR+ A E++A+RQA+   +      S+A+ +  L  V  LP AK GTFFARDNVS
Sbjct: 57  KHANNVRKSAAEYVARRQARKISMTRSMTSSLALPMSQLSDVAFLPNAKAGTFFARDNVS 116

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFIGW R  LG+ ECLLFETDDLIMRKNE+HVILCLLE+   G KF
Sbjct: 117 NFIGWCRNSLGIIECLLFETDDLIMRKNERHVILCLLEVARRGAKF 162

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856084|ref|XP_003703540.1| PREDICTED: uncharacterized protein LOC100880568 [Megachile rotundata]

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HANNVR+ A E++A+RQA+   +      S+A+ +  L  V  LP AK GTFFARDNVS
Sbjct: 57  KHANNVRKSAAEYVARRQARKISMTRSITSSLALPMSQLSDVAFLPNAKAGTFFARDNVS 116

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFIGW R  LG+ ECLLFETDDLIMRKNE+HVILCLLE+   G KF
Sbjct: 117 NFIGWCRNSLGIIECLLFETDDLIMRKNERHVILCLLEVARRGAKF 162

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195565456|ref|XP_002105695.1| GD16809 [Drosophila simulans] gi|194203691|gb|EDX17267.1| GD16809 [Drosophila simulans]

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HAN VR+ AE+++A+RQA+ K +       +A  +L +  V +LP AK GTFFARDNVS
Sbjct: 766 KHANYVRQAAEDYLARRQARNKSMTRSMTSGLAGPILAMGNVHYLPAAKSGTFFARDNVS 825

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFI W R+ L + ECLLFETDDLIMRKNEKHVILCLLE+   G KF
Sbjct: 826 NFITWCRKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARRGAKF 871

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195047563|ref|XP_001992366.1| GH24710 [Drosophila grimshawi] gi|193893207|gb|EDV92073.1| GH24710 [Drosophila grimshawi]

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HAN VR+ AE+++A+RQA+ K +       +A  +L L  V +LP AK GTFFARDNVS
Sbjct: 56  KHANYVRQAAEDYLARRQARNKSMTRSMTSGLAGPILALGNVHYLPAAKSGTFFARDNVS 115

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFI W R+ L + ECLLFETDDLIMRKNEKHVILCLLE+   G KF
Sbjct: 116 NFITWCRKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARRGAKF 161

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397247|ref|XP_002057240.1| GJ16981 [Drosophila virilis] gi|194147007|gb|EDW62726.1| GJ16981 [Drosophila virilis]

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HAN VR+ AE+++A+RQA+ K +       +A  +L L  V +LP AK GTFFARDNVS
Sbjct: 56  KHANYVRQAAEDYLARRQARNKSMTRSMTSGLAGPILALGNVHYLPAAKSGTFFARDNVS 115

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFI W R+ L + ECLLFETDDLIMRKNEKHVILCLLE+   G KF
Sbjct: 116 NFITWCRKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARRGAKF 161

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195469984|ref|XP_002099915.1| GE16760 [Drosophila yakuba] gi|194187439|gb|EDX01023.1| GE16760 [Drosophila yakuba]

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HAN VR+ AE+++A+RQA+ K +       +A  +L +  V +LP AK GTFFARDNVS
Sbjct: 56  KHANYVRQAAEDYLARRQARNKSMTRSMTSGLAGPILAMGNVHYLPAAKSGTFFARDNVS 115

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFI W R+ L + ECLLFETDDLIMRKNEKHVILCLLE+   G KF
Sbjct: 116 NFITWCRKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARRGAKF 161

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194896347|ref|XP_001978461.1| GG19600 [Drosophila erecta] gi|190650110|gb|EDV47388.1| GG19600 [Drosophila erecta]

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HAN VR+ AE+++A+RQA+ K +       +A  +L +  V +LP AK GTFFARDNVS
Sbjct: 56  KHANYVRQAAEDYLARRQARNKSMTRSMTSGLAGPILAMGNVHYLPAAKSGTFFARDNVS 115

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFI W R+ L + ECLLFETDDLIMRKNEKHVILCLLE+   G KF
Sbjct: 116 NFITWCRKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARRGAKF 161

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447060|ref|XP_002071047.1| GK25585 [Drosophila willistoni] gi|194167132|gb|EDW82033.1| GK25585 [Drosophila willistoni]

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 6/106 (5%)

Query: 9   QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
           +HAN VR+ AE+++A+RQA+ K +       +A  +L L  V +LP AK GTFFARDNVS
Sbjct: 56  KHANYVRQAAEDYLARRQARNKSMTRSMTSGLAGPILALGNVHYLPAAKSGTFFARDNVS 115

Query: 64  NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII-SGEKF 108
           NFI W ++ L + ECLLFETDDLIMRKNEKHVILCLLE+   G KF
Sbjct: 116 NFITWCKKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARRGAKF 161

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0029881	977	pigs "pickled eggs" [Drosophil	0.781	0.102	0.584	4.3e-25
UNIPROTKB|F1P281	269	GAS2L2 "Uncharacterized protei	0.664	0.315	0.463	2.9e-16
UNIPROTKB|F7ELI1	855	GAS2L2 "Uncharacterized protei	0.718	0.107	0.464	3.1e-15
UNIPROTKB|C9JRR6	143	GAS2L1 "GAS2-like protein 1" [	0.625	0.559	0.510	5.4e-15
UNIPROTKB|K7EIX8	864	GAS2L2 "GAS2-like protein 2" [	0.718	0.106	0.464	6.6e-15
UNIPROTKB|Q8NHY3	880	GAS2L2 "GAS2-like protein 2" [	0.718	0.104	0.464	6.7e-15
ZFIN|ZDB-GENE-070705-38	576	gas2l1 "growth arrest-specific	0.773	0.171	0.444	1.2e-14
RGD|1311206	428	Gas2l1 "growth arrest-specific	0.609	0.182	0.479	1.3e-14
UNIPROTKB|G1QKQ7	880	GAS2L2 "Uncharacterized protei	0.718	0.104	0.454	1.8e-14
UNIPROTKB|F6SQ98	672	GAS2L1 "Uncharacterized protei	0.609	0.116	0.489	2.5e-14

FB|FBgn0029881 pigs "pickled eggs" [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 4.3e-25, P = 4.3e-25
 Identities = 62/106 (58%), Positives = 77/106 (72%)

Query:     9 QHANNVRRYAEEHMAKRQAQGKDV-----HSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
             +HAN VR+ A +++A+RQA+ K +       +A  +L +  V +LP AK GTFFARDNVS
Sbjct:    56 KHANYVRQAAVDYLARRQARNKSMTRSMTSGLAGPILAMGNVHYLPAAKSGTFFARDNVS 115

Query:    64 NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKF 108
             NFI W R+ L + ECLLFETDDLIMRKNEKHVILCLLE+   G KF
Sbjct:   116 NFITWCRKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARRGAKF 161

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

UNIPROTKB|F1P281 GAS2L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 44/95 (46%), Positives = 62/95 (65%)

Query:    10 HANNVRRYAEE--HMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIG 67
             HAN++ R AE+  H     AQ   + +  +S  N       P A+PGTF ARDNVSNFI 
Sbjct:    62 HANHITRVAEDFAHACPSAAQHLRLPTAGVSC-N-------PAAQPGTFQARDNVSNFIQ 113

Query:    68 WSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
             W R+ + + + L+FET+DL++RKNEK+ +LCLLE+
Sbjct:   114 WCRKEMDINDVLMFETEDLVLRKNEKNFVLCLLEL 148

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

UNIPROTKB|F7ELI1 GAS2L2 "Uncharacterized protein" [Callithrix jacchus (taxid:9483)]

 Score = 204 (76.9 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 46/99 (46%), Positives = 62/99 (62%)

Query:     4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
             L  C QHAN V   A   +A+  AQ + +    + V           A+PGTF ARDNVS
Sbjct:    63 LVLC-QHANAVTDAALAFLAETPAQAQKIPMPRVGV------SCNEAARPGTFQARDNVS 115

Query:    64 NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
             NFI W R+ +G+ E L+FET+DL++RKN K+V+LCLLE+
Sbjct:   116 NFIQWCRKEMGIQEVLMFETEDLVLRKNVKNVVLCLLEL 154

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0005874 "microtubule" evidence=ISS

UNIPROTKB|C9JRR6 GAS2L1 "GAS2-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 48/94 (51%), Positives = 58/94 (61%)

Query:     9 QHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGW 68
             QHAN V   A    A R A+G  V   A SV+            PG+F ARDNV+ FIGW
Sbjct:    64 QHANAVTEAARALAAARPARG--VAFQAHSVV------------PGSFMARDNVATFIGW 109

Query:    69 SRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
              R  LGV E L+FET+DL++RKNEK V+LCLLE+
Sbjct:   110 CRVELGVPEVLMFETEDLVLRKNEKSVVLCLLEV 143

GO:0001725 "stress fiber" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

UNIPROTKB|K7EIX8 GAS2L2 "GAS2-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 46/99 (46%), Positives = 62/99 (62%)

Query:     4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
             L  C QHAN V   A   +A+  AQ + +    + V           A+PGTF ARDNVS
Sbjct:    63 LVLC-QHANVVTDAALAFLAEAPAQAQKIPMPRVGV------SCNGAAQPGTFQARDNVS 115

Query:    64 NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
             NFI W R+ +G+ E L+FET+DL++RKN K+V+LCLLE+
Sbjct:   116 NFIQWCRKEMGIQEVLMFETEDLVLRKNVKNVVLCLLEL 154

GO:0007050 "cell cycle arrest" evidence=IEA

UNIPROTKB|Q8NHY3 GAS2L2 "GAS2-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 46/99 (46%), Positives = 62/99 (62%)

Query:     4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
             L  C QHAN V   A   +A+  AQ + +    + V           A+PGTF ARDNVS
Sbjct:    63 LVLC-QHANVVTDAALAFLAEAPAQAQKIPMPRVGV------SCNGAAQPGTFQARDNVS 115

Query:    64 NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
             NFI W R+ +G+ E L+FET+DL++RKN K+V+LCLLE+
Sbjct:   116 NFIQWCRKEMGIQEVLMFETEDLVLRKNVKNVVLCLLEL 154

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IDA

GO:0001725 "stress fiber" evidence=IDA

GO:0001578 "microtubule bundle formation" evidence=IMP

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA

ZFIN|ZDB-GENE-070705-38 gas2l1 "growth arrest-specific 2 like 1" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 48/108 (44%), Positives = 66/108 (61%)

Query:     2 CPLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDN 61
             C L  C +HANNV R A E     +A   D  ++++ + +   V       PG+F ARDN
Sbjct:    57 CAL--C-RHANNVNRAAHEF----KANCPDA-ALSLRIPSKDVVFQSRNVIPGSFLARDN 108

Query:    62 VSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKF 108
             VSNFIGW R+ L + + L+FET+DL+ R NEK+ +LCLLE+   G KF
Sbjct:   109 VSNFIGWCRQELWIKDVLMFETNDLVERCNEKNFVLCLLEVARRGAKF 156

GO:0007050 "cell cycle arrest" evidence=IEA

RGD|1311206 Gas2l1 "growth arrest-specific 2 like 1" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 46/96 (47%), Positives = 58/96 (60%)

Query:     9 QHANNVRRYAEEHMAKRQAQGK--DVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFI 66
             QHAN V + A    A R  +G     HS+A                PG+F ARDNV++FI
Sbjct:    64 QHANAVTKAARALAAARPTRGVAFQAHSVA----------------PGSFMARDNVASFI 107

Query:    67 GWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
             GW R  LGV E L+FET+DL++RKNEK V+LCLLE+
Sbjct:   108 GWCRAELGVPEVLMFETEDLVLRKNEKSVVLCLLEV 143

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

UNIPROTKB|G1QKQ7 GAS2L2 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)]

 Score = 197 (74.4 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 45/99 (45%), Positives = 62/99 (62%)

Query:     4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVS 63
             L  C +HAN V   A   +A+  AQ + +    + V           A+PGTF ARDNVS
Sbjct:    63 LVLC-RHANVVTDAALAFLAEAPAQAQKIPMPRVGV------SCNGAAQPGTFQARDNVS 115

Query:    64 NFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
             NFI W R+ +G+ E L+FET+DL++RKN K+V+LCLLE+
Sbjct:   116 NFIQWCRKEMGIQEVLMFETEDLVLRKNVKNVVLCLLEL 154

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0005874 "microtubule" evidence=ISS

UNIPROTKB|F6SQ98 GAS2L1 "Uncharacterized protein" [Equus caballus (taxid:9796)]

 Score = 194 (73.4 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 47/96 (48%), Positives = 57/96 (59%)

Query:     9 QHANNVRRYAEEHMAKRQAQGK--DVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFI 66
             QHAN V   A    A R A+G     HS+A                PG+F ARDNV+ FI
Sbjct:    64 QHANAVTEAARALAAARPARGVAFQAHSVA----------------PGSFMARDNVATFI 107

Query:    67 GWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
             GW R  LGV E L+FET+DL++RKNEK V+LCLLE+
Sbjct:   108 GWCRTELGVPEVLMFETEDLVLRKNEKSVVLCLLEV 143

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISS

GO:0007050 "cell cycle arrest" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISS

GO:0009267 "cellular response to starvation" evidence=ISS

GO:0010629 "negative regulation of gene expression" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0045647 "negative regulation of erythrocyte differentiation" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0005874 "microtubule" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	1e-05
COG5199	178	COG5199, SCP1, Calponin [Cytoskeleton]	7e-05
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	0.001

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 51  AKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII 103
                F   +N++  + ++ + LGV   + F+ +DL+   +EK V+  L  +I
Sbjct: 53  NPLSRFKRLENINLALNFAEK-LGVPV-VNFDAEDLVEDGDEKLVLGLLWSLI 103

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton]

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 2   CPLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGT------ 55
           CP     +    V  + E  + ++     D+ S+    + L   + L  A P        
Sbjct: 8   CP--GMDKQQKEVTLWIETVLGEKFEPPGDLLSLLKDGVRL--CRILNEASPLDIKYKES 63

Query: 56  ---FFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCL 99
              F   +N+S+FI   ++ L V E  LF+T+DL   K+ + V++CL
Sbjct: 64  KMPFVQMENISSFINGLKK-LRVPEYELFQTNDLFEAKDLRQVVICL 109

Length = 178

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 52  KPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII 103
               F   +N++  + ++ + LGV    + E +DL+   NEK V+  L ++ 
Sbjct: 51  NKNRFDKLENLNLALEFAEKKLGV--PKVLEPEDLVEDGNEKLVLTLLAQLF 100

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG2046|consensus	193		99.85
COG5199	178	SCP1 Calponin [Cytoskeleton]	99.83
KOG0532|consensus	722		99.53
cd00014	107	CH Calponin homology domain; actin-binding domain	99.27
smart00033	103	CH Calponin homology domain. Actin binding domains	98.98
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	98.54
KOG2996|consensus	865		98.21
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	97.72
KOG2128|consensus	1401		97.61
PF06395	89	CDC24: CDC24 Calponin; InterPro: IPR010481 This is	95.52

>KOG2046|consensus

Probab=99.85  E-value=9e-22  Score=156.59  Aligned_cols=86  Identities=29%  Similarity=0.388  Sum_probs=72.3

Q ss_pred             cccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccc
Q psy610            4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFET   83 (128)
Q Consensus         4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT   83 (128)
                      ++|| +++|.+.+                           .+....+.+.+.|++||||++||+++++ |||++.|+|||
T Consensus        56 ~iLC-kl~N~l~p---------------------------~~~~~~~~s~~~f~qmEnIs~Fi~a~~~-ygv~~~d~Fqt  106 (193)
T KOG2046|consen   56 VILC-KLINKLYP---------------------------GVVKKINESKMAFVQMENISNFIKAAKK-YGVPEVDLFQT  106 (193)
T ss_pred             HHHH-HHHHHhCc---------------------------CcccccccccccHHHHHHHHHHHHHHHh-cCCChhhcccc
Confidence            6899 99999844                           1222223456699999999999999998 99999999999


Q ss_pred             cccccccChhHHHHHHHHHHc-ccc---CCCCCCCCccc
Q psy610           84 DDLIMRKNEKHVILCLLEIIS-GEK---FEISKTPPKKL  118 (128)
Q Consensus        84 ~DL~e~kn~~~Vv~cL~~l~R-a~~---~g~~~~gpk~~  118 (128)
                      +||+|++|+.+|+.||++|+| |.+   ++.+.++||.-
T Consensus       107 vDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~~~g~k~a  145 (193)
T KOG2046|consen  107 VDLFEGKDMAQVQVTLLALARKAQKKGLFSGPGIGPKLA  145 (193)
T ss_pred             cccccCCCHHHHHHHHHHHHHHHhhccccCCCCcCCchh
Confidence            999999999999999999999 764   46888888753

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=99.83  E-value=2e-21  Score=151.57  Aligned_cols=71  Identities=30%  Similarity=0.453  Sum_probs=64.9

Q ss_pred             CcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-ccc---CCCCCCCCcc
Q psy610           44 PVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEK---FEISKTPPKK  117 (128)
Q Consensus        44 ~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~---~g~~~~gpk~  117 (128)
                      .|+|+++.+  +|+||||||.||.+.++ |||||.+||||+||+|+||+++|+.||++++| |++   +.++.+||+.
T Consensus        57 ~I~yKeSkm--pFVQmenIs~Fin~~~k-~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~p~lGP~L  131 (178)
T COG5199          57 DIKYKESKM--PFVQMENISSFINGLKK-LRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSGPFLGPHL  131 (178)
T ss_pred             cceecccCC--ceeeHHHHHHHHHHHHH-hCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCCCccCccc
Confidence            499999976  89999999999999999 99999999999999999999999999999999 764   3577888863

>KOG0532|consensus

Probab=99.53  E-value=2.8e-15  Score=135.80  Aligned_cols=81  Identities=30%  Similarity=0.466  Sum_probs=75.6

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||+||.             ++|++||||   +|+|+....     -++|.||.|||++||| +||||.+|+.
T Consensus       604 GViLC-hLaN~lRP-------------RSV~SIHVP---SPaV~klsm-----arcrrNVdnFLeaCRk-iGVpEa~lCS  660 (722)
T KOG0532|consen  604 GVILC-HLANHLRP-------------RSVASIHVP---SPAVPKLSM-----ARCRRNVDNFLEACRK-IGVPEADLCS  660 (722)
T ss_pred             chhhH-hhhcccCC-------------CCccceecC---CCccchhHH-----HHHHHhHHHHHHHHHH-cCCChHhhcC
Confidence            57999 99999976             899999999   999998887     6799999999999999 9999999999


Q ss_pred             ccccccc--cChhHHHHHHHHHHc-cc
Q psy610           83 TDDLIMR--KNEKHVILCLLEIIS-GE  106 (128)
Q Consensus        83 T~DL~e~--kn~~~Vv~cL~~l~R-a~  106 (128)
                      ..|++.+  ++++++..+++.+|. |+
T Consensus       661 ~~Dilq~~~r~~rk~~~t~~~~~~~a~  687 (722)
T KOG0532|consen  661 PMDILQKIERNPRKVARTVLTVGKKAQ  687 (722)
T ss_pred             HHHhhhhhcccchhHHHHHHhhccccC
Confidence            9999988  999999999999997 64

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=99.27  E-value=2.7e-12  Score=87.69  Aligned_cols=50  Identities=26%  Similarity=0.396  Sum_probs=47.2

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      ...|.+++||+.|+++|++ +||++. +|+++||++++|.++|+.||.++.|
T Consensus        55 ~~~~~~~~Ni~~~l~~~~~-~gi~~~-~~~~~Dl~~~~n~~~vl~~l~~l~~  104 (107)
T cd00014          55 LSRFKRLENINLALNFAEK-LGVPVV-NFDAEDLVEDGDEKLVLGLLWSLIR  104 (107)
T ss_pred             cchhhHHHHHHHHHHHHHH-cCCcee-ccCHHHHhhCCCceeeHHHHHHHHH
Confidence            3469999999999999998 999999 9999999999999999999999986

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>smart00033 CH Calponin homology domain

Probab=98.98  E-value=2.5e-10  Score=77.03  Aligned_cols=47  Identities=28%  Similarity=0.408  Sum_probs=42.3

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccc-cChhHHHHHHHHH
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMR-KNEKHVILCLLEI  102 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~-kn~~~Vv~cL~~l  102 (128)
                      ..|++++|++.|+++|++ +| ....+|+++||+++ |++.+|+.||+.+
T Consensus        56 ~~~~~~~Ni~~~l~~~~~-~g-~~~~~~~~~Dl~~~~k~~~~v~~~l~~~  103 (103)
T smart00033       56 SRFKKIENINLALSFAEK-LG-GKLVLFEPEDLVEGNKLILGVIWTLILL  103 (103)
T ss_pred             cHHHHHHhHHHHHHHHHH-cC-CeeeccCHHHHhhcchHHHHHHHHHHhC
Confidence            369999999999999998 88 57789999999999 7999999999863

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=98.54  E-value=1.1e-07  Score=64.83  Aligned_cols=49  Identities=22%  Similarity=0.365  Sum_probs=43.6

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      ..|.+++||+.|+++|++.+|++...  +++||++++|.+.|+.+|.++.+
T Consensus        57 ~~~~~~~Ni~~~l~~~~~~lg~~~~~--~~~dl~~~~~~~~vl~~l~~l~~  105 (108)
T PF00307_consen   57 SPFDKLENIELALEAAEKKLGIPPLL--SPEDLVEKGDEKSVLSFLWQLFR  105 (108)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTSSCTS---HHHHHSTT-HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHCcCHHHHHHHHHHHHH
Confidence            57999999999999999779999887  99999999999999999999875

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>KOG2996|consensus

Probab=98.21  E-value=7.5e-07  Score=81.98  Aligned_cols=84  Identities=21%  Similarity=0.304  Sum_probs=67.9

Q ss_pred             cccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccc
Q psy610            4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFET   83 (128)
Q Consensus         4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT   83 (128)
                      ++|| |++|++...+-+                     .+.|-..  .+...|.+-.||.-|+.+|..-+|+.+++||+.
T Consensus        41 vLLC-qLlnnL~p~sId---------------------lkeIn~r--pQmSqFLClkNIrtFl~~C~~~Fglr~seLF~a   96 (865)
T KOG2996|consen   41 VLLC-QLLNNLVPHSID---------------------LKEINLR--PQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEA   96 (865)
T ss_pred             hHHH-HHHhhcCCCccc---------------------HHHhhcC--CCccchhhHhhHHHHHHHHHHHhCCchhhhcch
Confidence            6799 999999764322                     1122222  334489999999999999987799999999999


Q ss_pred             cccccccChhHHHHHHHHHHc---cccCCCC
Q psy610           84 DDLIMRKNEKHVILCLLEIIS---GEKFEIS  111 (128)
Q Consensus        84 ~DL~e~kn~~~Vv~cL~~l~R---a~~~g~~  111 (128)
                      .|||.-++-..|+.+|-.|++   |...|+.
T Consensus        97 fDLfdv~dFgKVi~tlS~LS~t~ial~rGi~  127 (865)
T KOG2996|consen   97 FDLFDVRDFGKVIKTLSRLSHTPIALNRGIR  127 (865)
T ss_pred             hhhhhhhhHHHHHHHHHHhccChHHHhcCCC
Confidence            999999999999999999998   6777754

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=97.72  E-value=1.9e-05  Score=74.88  Aligned_cols=51  Identities=33%  Similarity=0.527  Sum_probs=48.5

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      .-.|.-.|||..|+..... .|+||.-=||-.||||+||+.+|+.||++|+-
T Consensus        96 ~LQfrHtdNIN~Fld~i~~-vGlPe~FhFEl~DlYekKN~pkViyciHaL~~  146 (1054)
T COG5261          96 KLQFRHTDNINAFLDLIEH-VGLPESFHFELQDLYEKKNIPKVIYCIHALIS  146 (1054)
T ss_pred             cceeeccccHHHHHhHhhh-cCCcceeeeehHhhhccCCcchhHHHHHHHHH
Confidence            3468999999999999998 99999999999999999999999999999997

>KOG2128|consensus

Probab=97.61  E-value=3.1e-05  Score=75.83  Aligned_cols=55  Identities=25%  Similarity=0.282  Sum_probs=50.4

Q ss_pred             ChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccCCCC
Q psy610           55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKFEIS  111 (128)
Q Consensus        55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~~  111 (128)
                      .|.--|||.+|+.+... .|+||.=-|||-|+||+||++ |+.||++|+- -.+-|+.
T Consensus        97 ~frHtdNi~q~~~~me~-iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k~~~a  152 (1401)
T KOG2128|consen   97 HFRHTDNINQWLRAMES-IGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLFKQGKA  152 (1401)
T ss_pred             eeecchhHHHHHHHHhh-cCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHhcCCCC
Confidence            49999999999999996 999999999999999999999 9999999998 7775543

>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain

Probab=95.52  E-value=0.015  Score=41.72  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             ChhhHhhHHHHHHHHHhcCCCCccccccccccccc
Q psy610           55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMR   89 (128)
Q Consensus        55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~   89 (128)
                      .=.+...|-.||.+|++++|+++.++|.-.|||..
T Consensus        39 ~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~   73 (89)
T PF06395_consen   39 LKVCKKAIYKFIQACKQELGFPDEELFTISDLYGD   73 (89)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccceeeeeccccC
Confidence            34566789999999999999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	4e-08
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	4e-08
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	5e-08
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	5e-08
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	7e-08
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	7e-08
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	1e-07
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	2e-07
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	6e-07
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	1e-05
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	2e-04

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 37  ISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVI 96
           +       +  +  +    F   DN++ F+ +    +G+ E   FE  D+   KN   VI
Sbjct: 48  VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG-IGLPEIFHFELTDIYEGKNLPKVI 106

Query: 97  LCLLEIISGEKFEISKTPPKK 117
            C+   +S         PP  
Sbjct: 107 YCIHA-LSYFLSMQDLAPPLI 126

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193

 Score = 48.5 bits (115), Expect = 4e-08
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 51  AKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
           A    F   DNV  ++      +G+ +    ET D+  RKN    I C+  +
Sbjct: 107 ATGLHFRHTDNVIQWLNAMDE-IGLPKIFYPETTDIYDRKNMPRCIYCIHAL 157

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 37  ISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVI 96
           +       +  +  +    F   DN++ F+ +    +G+ E   FE  D+   KN   VI
Sbjct: 92  VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHG-IGLPEIFHFELTDIYEGKNLPKVI 150

Query: 97  LCLLEIISGEKFEISKTPPKK 117
            C+   +S         PP  
Sbjct: 151 YCIHA-LSYFLSMQDLAPPLI 170

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136

 Score = 47.2 bits (112), Expect = 5e-08
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 53  PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
              +   +N+ NFI    +  GV    +FE +DL    N   V   LL +
Sbjct: 67  TQNWHQLENIGNFIKAITK-YGVKPHDIFEANDLFENTNHTQVQSTLLAL 115

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146

 Score = 47.2 bits (112), Expect = 7e-08
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 52  KPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
               +   +N+SNFI       G+    LFE +DL    N   V + LL +
Sbjct: 66  SMQNWHQLENLSNFIKAMVS-YGMNPVDLFEANDLFESGNMTQVQVSLLAL 115

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190

 Score = 47.6 bits (113), Expect = 7e-08
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 43  PPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLE 101
              +    A    F   DNV  ++      +G+ +    ET D+  RKN    I C+  
Sbjct: 77  DREQTRYKATGLHFRHTDNVIQWLNAMDE-IGLPKIFYPETTDIYDRKNMPRCIYCIHA 134

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 43  PPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
            PVK         F   + V+ F+  +    GV +  +F+T DL   K+   V   L+ +
Sbjct: 59  KPVKVPENPPSMVFKQMEQVAQFLKAAED-YGVIKTDMFQTVDLYEGKDMAAVQRTLMAL 117

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 52  KPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
               +   +N+ NF+   +   GV    +FE +DL    N   V   L+ +
Sbjct: 52  PVQNWHKLENIGNFLRAIKH-YGVKPHDIFEANDLFENTNHTQVQSTLIAL 101

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155

 Score = 45.0 bits (106), Expect = 6e-07
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 43  PPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
            PVK    A    F   + +S F+  + R  G+    +F+T DL   KN   V   L+ +
Sbjct: 67  APVKK-IQASTMAFKQMEQISQFLQAAER-YGINTTDIFQTVDLWEGKNMACVQRTLMNL 124

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Length = 126

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 45  VKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
           ++ +            N+  F+              F+ +DL   +N   V+  L+ +
Sbjct: 63  IEKVYPEPRSESECLSNIREFLRGCG---ASLRLETFDANDLYQGQNFNKVLSSLVTL 117

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 45  VKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEI 102
           V+             +N+++F+    +G    +  +F+ DDL    N   V+  LL +
Sbjct: 57  VEKFCLDPQTEADCINNINDFL----KGCATLQVEIFDPDDLYSGVNFSKVLSTLLAV 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	99.92
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	99.9
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	99.9
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	99.9
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	99.89
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	99.88
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	99.88
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	99.88
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	99.86
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	99.83
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	99.82
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.74
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	98.35
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	97.92
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	97.25
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	97.0
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	96.95
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	96.73
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	96.57
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	96.52
2qjz_A	123	Microtubule-associated protein RP/EB family member	96.45
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	96.37
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	95.1
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	93.95
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	90.48
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	80.7

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=99.92  E-value=7.8e-26  Score=168.85  Aligned_cols=90  Identities=20%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||.+++.+          ..+|     |      ++.  +.+.++|++||||++||+||++ |||++.++||
T Consensus        43 GvvLC-kL~N~l~P~~----------~~~I-----~------~ki--n~~~~~f~~~eNI~~FL~ac~~-~Gv~~~~lF~   97 (144)
T 1ujo_A           43 GVILS-KLVNSLYPEG----------SKPV-----K------VPE--NPPSMVFKQMEQVAQFLKAAED-YGVIKTDMFQ   97 (144)
T ss_dssp             SHHHH-HHHHHHSCTT----------TCCS-----C------CCS--SCCCSHHHHHHHHHHHHHHHHH-HTCCSSSCCC
T ss_pred             hHHHH-HHHHHhCccc----------CCCc-----c------eee--cCCCchhHHHHHHHHHHHHHHH-cCcCccccCC
Confidence            37899 9999996411          0111     1      122  2445789999999999999998 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-cccCC-----C-CCCCCcc
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEKFE-----I-SKTPPKK  117 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g-----~-~~~gpk~  117 (128)
                      |+||||+||+.+|+.||++|+| |.+.|     + |..+||+
T Consensus        98 t~DL~e~kn~~~V~~cL~aL~~~a~~~~~~~~~g~P~~~~k~  139 (144)
T 1ujo_A           98 TVDLYEGKDMAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKS  139 (144)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHHCSSCCSSCSTTTCSS
T ss_pred             hhHHHhcCCHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            9999999999999999999999 87554     3 8888886

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1.3e-24  Score=163.85  Aligned_cols=89  Identities=22%  Similarity=0.238  Sum_probs=73.2

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||.+.+.+          ..+++          .|    +.++++|++||||++||+||++ |||+++++||
T Consensus        51 GvvLC-kL~N~l~P~~----------~~~i~----------kI----n~~~~~F~~~eNI~~FL~ac~~-~Gv~~~~lF~  104 (155)
T 1wym_A           51 GTVLC-ELINALYPEG----------QAPVK----------KI----QASTMAFKQMEQISQFLQAAER-YGINTTDIFQ  104 (155)
T ss_dssp             SHHHH-HHHHHHSCTT----------TCSCC----------CC----CCCCCHHHHHHHHHHHHHHHHH-HTCCTTTCCC
T ss_pred             hHHHH-HHHHHhcccc----------CCCcC----------cc----cCCCccccHHHHHHHHHHHHHH-cCCCccccCC
Confidence            37899 9999996531          12221          12    2345789999999999999998 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-cccCC-CCCCC-----Ccc
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEKFE-ISKTP-----PKK  117 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g-~~~~g-----pk~  117 (128)
                      |+||||+||+.+|+.||++|+| |.++| .+.+|     ||+
T Consensus       105 t~DL~e~kn~~~Vi~cL~aL~~~a~~~~~gp~~g~p~~~~k~  146 (155)
T 1wym_A          105 TVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKK  146 (155)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHTTCSSSCCCSCSSSSCCC
T ss_pred             hHHHHhcCCHHHHHHHHHHHHHHHHHCCCCCcCCCCCCCCcc
Confidence            9999999999999999999999 88877 46666     776

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.90  E-value=1.1e-24  Score=161.33  Aligned_cols=86  Identities=21%  Similarity=0.328  Sum_probs=72.4

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| +++|.+.+             .+++          .|    +.++++|++||||++||+||++ |||+++++|+
T Consensus        45 GvvLC-kL~N~l~P-------------~~v~----------ki----~~~~~~f~~~eNI~~Fl~a~~~-~Gv~~~~lF~   95 (136)
T 1wyp_A           45 GIILC-EFINKLQP-------------GSVK----------KI----NESTQNWHQLENIGNFIKAITK-YGVKPHDIFE   95 (136)
T ss_dssp             SHHHH-HHHHHHST-------------TSSS----------CC----CCSSCSHHHHHHHHHHHHHHHH-HTCCGGGCCC
T ss_pred             HHhHH-HHHHhhCC-------------CCcc----------cc----cccccchHHHHHHHHHHHHHHH-cCCCcccccC
Confidence            37899 99999954             1221          11    2335689999999999999997 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-cccCC-CCCCCCcc
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEKFE-ISKTPPKK  117 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g-~~~~gpk~  117 (128)
                      |+||||+||+.+|+.||++|+| |.+.| .|.+|||+
T Consensus        96 ~~DL~e~kn~~~V~~cL~aL~~~a~~~g~~p~~g~k~  132 (136)
T 1wyp_A           96 ANDLFENTNHTQVQSTLLALASMAKTKGNKVNVGVSG  132 (136)
T ss_dssp             HHHHHSCSCSHHHHHHHHHHHHHHHHHTCCCCCCCCS
T ss_pred             chHHhcCCCHHHHHHHHHHHHHHHHHCCCCCcCcccc
Confidence            9999999999999999999999 87766 57788886

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.90  E-value=1.9e-24  Score=161.92  Aligned_cols=87  Identities=22%  Similarity=0.276  Sum_probs=73.6

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||.+.+             .+++          .|    +.++++|++||||++||+||++ |||+++++|+
T Consensus        45 GvvLC-kL~N~l~P-------------~~v~----------ki----n~~~~~f~~~eNI~~FL~a~~~-~Gv~~~~lF~   95 (146)
T 1wyn_A           45 GTILC-TLMNKLQP-------------GSVP----------KI----NRSMQNWHQLENLSNFIKAMVS-YGMNPVDLFE   95 (146)
T ss_dssp             TSHHH-HHHHHHCT-------------TSCS----------CC----CCSSCHHHHHHHHHHHHHHHHH-HTCCSSSCCC
T ss_pred             HHHHH-HHHHHhCC-------------CCcc----------cc----ccccccccHHHHHHHHHHHHHH-cCCCcccccC
Confidence            37899 99999954             1221          11    2335689999999999999997 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-cccCCC---CCCCCccc
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEKFEI---SKTPPKKL  118 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g~---~~~gpk~~  118 (128)
                      |+||||+||+.+|+.||++|+| |.+.|+   +.+|||+-
T Consensus        96 ~~DL~e~kn~~~V~~cL~aL~~~a~~~g~~~~p~~g~k~a  135 (146)
T 1wyn_A           96 ANDLFESGNMTQVQVSLLALAGKAKTKGLQSGVDIGVKYS  135 (146)
T ss_dssp             HHHHHTCSCSHHHHHHHHHHHHHHGGGTSCCCSCCCCCCC
T ss_pred             hhHHHhcCChHHHHHHHHHHHHHHHhCCCCCCCccceecc
Confidence            9999999999999999999999 988874   78888863

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=99.89  E-value=2.7e-24  Score=166.89  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             cccchHHHhhHHHHHHHHHHhhhhcCCcc--cccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccc
Q psy610            4 LFFCPQHANNVRRYAEEHMAKRQAQGKDV--HSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLF   81 (128)
Q Consensus         4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~--~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LF   81 (128)
                      ++|| ++||.+.+             .++  +.|+.    .+..+++.  +.++|++||||++||+||++ ||||++++|
T Consensus        56 vvLC-kL~N~l~P-------------~sv~~~kI~~----~~~~~~~~--~~~~f~~~eNI~~FL~ac~~-~Gvp~~~lF  114 (190)
T 2rr8_A           56 VYLA-KLGNFFSP-------------KVVSLKKIYD----REQTRYKA--TGLHFRHTDNVIQWLNAMDE-IGLPKIFYP  114 (190)
T ss_dssp             HHHH-HHHHHSCT-------------TTSCSSCSST----TTCHHHHH--TCCCSSTHHHHHHHHHGGGG-TTCCSTTCC
T ss_pred             hhHH-HHHHHhCC-------------CCcccccccc----cccccccC--CCCcchHHHHHHHHHHHHHH-cCCCccccC
Confidence            6899 99999965             122  12221    11222332  35689999999999999998 999999999


Q ss_pred             cccccccccChhHHHHHHHHHHc-cccCCC
Q psy610           82 ETDDLIMRKNEKHVILCLLEIIS-GEKFEI  110 (128)
Q Consensus        82 qT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~  110 (128)
                      ||+||||+||+.+|+.||++|+| |+++|+
T Consensus       115 et~DL~e~kn~~~Vi~cL~aL~~~a~~~g~  144 (190)
T 2rr8_A          115 ETTDIYDRKNMPRCIYCIHALSLYLFKLGL  144 (190)
T ss_dssp             CHHHHTCTTCCHHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHhcCCHHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999 999885

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.88  E-value=1.7e-23  Score=158.43  Aligned_cols=80  Identities=18%  Similarity=0.277  Sum_probs=67.7

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||.+.+             .+++.          |.   .++.++|++||||++||+||++ ||||++++|+
T Consensus        41 GvvLC-kL~N~l~P-------------~~i~k----------I~---~~~~~~f~~~eNI~~FL~a~~~-~Gv~~~~lF~   92 (159)
T 1p2x_A           41 GVVLA-LLVQKFQP-------------DKLIK----------IF---YSNELQFRHSDNINKFLDFIHG-IGLPEIFHFE   92 (159)
T ss_dssp             SHHHH-HHHHHHCT-------------TSCCC----------CC---CCSSCCTTHHHHHHHHHHHHHH-TTCCGGGCCC
T ss_pred             hHHHH-HHHHHhCC-------------CCccc----------cc---cccCCcchHHHHHHHHHHHHHH-cCCCcccccC
Confidence            47899 99999965             12221          11   1235689999999999999997 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-cccCCC
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEKFEI  110 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g~  110 (128)
                      |+||||+||+.+|+.||++|+| +.+.|+
T Consensus        93 ~~DL~e~kn~~~Vi~~L~aL~~~~~~~g~  121 (159)
T 1p2x_A           93 LTDIYEGKNLPKVIYCIHALSYFLSMQDL  121 (159)
T ss_dssp             HHHHSSCSCHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999 988884

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=99.88  E-value=1.5e-23  Score=149.41  Aligned_cols=76  Identities=22%  Similarity=0.389  Sum_probs=64.5

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||.+.+             .+++          .|    +.++++|++||||++||+||++ |||+++++|+
T Consensus        31 GvvLC-kL~N~l~P-------------~~v~----------ki----~~~~~~f~~~eNI~~Fl~a~~~-~Gv~~~~lF~   81 (108)
T 1h67_A           31 GVILC-ELINKLQP-------------GSVQ----------KV----NDPVQNWHKLENIGNFLRAIKH-YGVKPHDIFE   81 (108)
T ss_dssp             CSHHH-HHHHHHST-------------TSST----------TC----CCTTSSHHHHHHHHHHHHHHHH-HTSCGGGSCC
T ss_pred             HHHHH-HHHHHhCC-------------CCcc----------cc----cccccchHHHHHHHHHHHHHHH-cCCCcccccC
Confidence            37899 99999954             1221          11    2345689999999999999997 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-ccc
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEK  107 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~  107 (128)
                      |+||||+||+++|+.||++|+| |.+
T Consensus        82 ~~DL~e~kn~~~V~~~l~aL~~~a~~  107 (108)
T 1h67_A           82 ANDLFENTNHTQVQSTLIALASQAKT  107 (108)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHhCCChHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999 753

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=99.88  E-value=7.8e-24  Score=165.38  Aligned_cols=88  Identities=20%  Similarity=0.228  Sum_probs=72.1

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCccc--ccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVH--SIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLL   80 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~--~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~L   80 (128)
                      .++|| ++||.|++             .++|  .|+    ..+.++|+.+  +++|++||||++||+||++ ||||++++
T Consensus        77 GvvLC-kL~N~l~P-------------g~vp~kkI~----~~~~~~~~~~--~~~F~~~eNI~~FL~ac~~-~Gvp~~~l  135 (193)
T 3i6x_A           77 GVYLA-KLGNFFSP-------------KVVSLKKIY----DREQTRYKAT--GLHFRHTDNVIQWLNAMDE-IGLPKIFY  135 (193)
T ss_dssp             SHHHH-HHHHHHCT-------------TTCCGGGST----TTTCHHHHHS--CCCGGGHHHHHHHHHHHHH-HTCCGGGC
T ss_pred             HHHHH-HHHHHHCC-------------CCCCccccC----CcccccccCc--ccchHHHHHHHHHHHHHHH-cCCCcccC
Confidence            37999 99999975             2222  221    1223444443  4689999999999999997 99999999


Q ss_pred             ccccccccccChhHHHHHHHHHHc-cccCCCC
Q psy610           81 FETDDLIMRKNEKHVILCLLEIIS-GEKFEIS  111 (128)
Q Consensus        81 FqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~~  111 (128)
                      |+|+||||+||+++|+.||++|+| +.++|+.
T Consensus       136 Fet~DL~e~kn~~~V~~cL~aL~~~a~~~G~~  167 (193)
T 3i6x_A          136 PETTDIYDRKNMPRCIYCIHALSLYLFKLGLA  167 (193)
T ss_dssp             CCHHHHHSCSCHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CCcHHHhcCCCHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999 9999985

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.86  E-value=1.9e-22  Score=158.45  Aligned_cols=80  Identities=18%  Similarity=0.274  Sum_probs=67.7

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      -++|| ++||.|.+             .+++          .|.   ..+.++|++||||++||+||++ |||+++++||
T Consensus        85 GvvLC-kLiN~l~P-------------~sv~----------kI~---~~s~~~f~~~eNI~~FL~ac~~-~Gvp~~~lF~  136 (203)
T 1p5s_A           85 GVVLA-LLVQKFQP-------------DKLI----------KIF---YSNELQFRHSDNINKFLDFIHG-IGLPEIFHFE  136 (203)
T ss_dssp             SHHHH-HHHHHHCT-------------TSCC----------CCC---CCSSSCCCHHHHHHHHHHHHHH-TTCCGGGCCC
T ss_pred             hHHHH-HHHHHhCC-------------CCcc----------ccc---CCCCCcchHHHHHHHHHHHHHH-cCCCcccccC
Confidence            37899 99999964             1221          121   1235589999999999999997 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-cccCCC
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEKFEI  110 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~~g~  110 (128)
                      |+||||+||+.+|+.||++|+| +.+.|+
T Consensus       137 t~DL~e~kn~~~Vi~~L~aL~~~a~~~g~  165 (203)
T 1p5s_A          137 LTDIYEGKNLPKVIYCIHALSYFLSMQDL  165 (203)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999 988886

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=99.83  E-value=1.4e-21  Score=143.81  Aligned_cols=54  Identities=17%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccCCC
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKFEI  110 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~  110 (128)
                      ++|++||||++||+||++.+|+   ++|||+||||+||+.+|+.||++|+| ++++|+
T Consensus        72 ~~f~~~eNI~~FL~a~~~~~g~---~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~G~  126 (126)
T 2l3g_A           72 SESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFNKVLSSLVTLNKVTADIGL  126 (126)
T ss_dssp             SHHHHHHHHHHHHHHHHHTSCC---CCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHHHHHHHHHhCCC---CccCHHHHHhCCCHHHHHHHHHHHHHHHHHccC
Confidence            4799999999999999964775   99999999999999999999999999 999884

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.82  E-value=6.8e-21  Score=138.74  Aligned_cols=51  Identities=25%  Similarity=0.270  Sum_probs=48.2

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccC
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKF  108 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~  108 (128)
                      ++|++||||++||+||++ ||+   ++|||+||||+||+++|+.||++|+| ++++
T Consensus        66 ~~f~~~eNI~~FL~a~~~-~g~---~~F~~~DL~e~kn~~~V~~cL~aL~~~~~~~  117 (121)
T 1wyr_A           66 TEADCINNINDFLKGCAT-LQV---EIFDPDDLYSGVNFSKVLSTLLAVNKATESG  117 (121)
T ss_dssp             SHHHHHHHHHHHHHHHHH-HTC---CCCCHHHHHTCSCHHHHHHHHHHHHHHHSCC
T ss_pred             chHHHHHHHHHHHHHHHH-cCC---CccCHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence            479999999999999998 997   89999999999999999999999999 8774

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.74  E-value=8.7e-19  Score=151.27  Aligned_cols=89  Identities=22%  Similarity=0.304  Sum_probs=67.0

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||.+++             .+++        .+.|.  ...+...|++||||++||+||++.||||+.++|+
T Consensus        43 G~~Lc-~l~n~l~p-------------~~v~--------~~~~~--~~~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~   98 (587)
T 3ky9_A           43 GVLLC-QLLNNLLP-------------HAIN--------LREVN--LRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFE   98 (587)
T ss_dssp             THHHH-HHHHHHST-------------TSSC--------GGGSC--SSCTTBHHHHHHHHHHHHHHHHHTTCCCTTSSCC
T ss_pred             HHHHH-HHHHHhCC-------------CCCC--------ccccC--CCccccchHHHHHHHHHHHHHHHHcCCCHHHcCC
Confidence            47899 99999965             1221        11121  1122235999999999999994449999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc---cccCCCCCCCC
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS---GEKFEISKTPP  115 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R---a~~~g~~~~gp  115 (128)
                      |+||||+||+.+|+.||.+|+|   |.+.|+...+.
T Consensus        99 ~~Dl~~~~~~~~V~~~l~~l~~~~~~~~~g~~~fp~  134 (587)
T 3ky9_A           99 AFDLFDVQDFGKVIYTLSALSWTPIAQNRGIMPFPT  134 (587)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHSTTTGGGTCCCC--
T ss_pred             chhhhccCCcchHHHHHHHHhhhhhhhccCCCCCCC
Confidence            9999999999999999999998   45667654443

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=5.8e-07  Score=64.79  Aligned_cols=49  Identities=10%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      .+.|+.+|||+.||+++++ +||+.+.+ .++|+++ .|.+.++.+|..|.|
T Consensus        73 ~~~~~~~eNv~~aL~~~~~-~gv~~~~i-~~~DI~d-gn~~~iL~Llw~L~r  121 (129)
T 2yrn_A           73 KNRSQMIENIDACLNFLAA-KGINIQGL-SAEEIRN-GNLKAILGLFFSLSR  121 (129)
T ss_dssp             CSTTHHHHHHHHHHHHHHH-HTCCCTTC-CHHHHHH-TCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHH-hCCcccCC-Chhhhhc-CCHhHHHHHHHHHHH
Confidence            3589999999999999997 99998887 6999997 889999999999998

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=97.92  E-value=6.8e-06  Score=70.44  Aligned_cols=37  Identities=14%  Similarity=0.168  Sum_probs=34.3

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccCh
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNE   92 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~   92 (128)
                      ..|+++|||+.||++|+. +|++.+.+ +++||+|+++.
T Consensus        73 ~~~~~~eNi~~~L~~~k~-~g~~~~~i-~~~Dl~dg~~~  109 (506)
T 1pxy_A           73 NPWERNENHTLCLNSAKA-VGCSVVNI-GTQDLAEGRPH  109 (506)
T ss_dssp             CHHHHHHHHHHHHHHHHH-TTCCCTTC-CHHHHHHTCHH
T ss_pred             cHHHHHHHHHHHHHHHHH-hCCCcCCC-CHHHHhcCChH
Confidence            369999999999999997 99999998 99999999983

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=97.25  E-value=0.00033  Score=55.37  Aligned_cols=49  Identities=18%  Similarity=0.192  Sum_probs=39.2

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      .+.|+++|||+.||+++++ +||+-+.. +++|++++ |.+.++--|..+-|
T Consensus        79 ~~~~~~~eNi~~aL~~~k~-~gv~lv~I-~~~DIvdG-~~kliLgLlW~li~  127 (254)
T 1wku_A           79 KMRFHKIANVNKALDFIAS-KGVKLVSI-GAEEIVDG-NLKMTLGMIWTIIL  127 (254)
T ss_dssp             CSHHHHHHHHHHHHHHHHT-TTCCCCSC-CHHHHHHC-CHHHHHHHHHHHHH
T ss_pred             ccHHHHHHhHHHHHHHHHH-cCCCccCC-CHHHHhcc-chHHHHHHHHHHHH
Confidence            4579999999999999997 99998776 99999987 45666555555544

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=97.00  E-value=0.00038  Score=59.81  Aligned_cols=50  Identities=14%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      ...|+++|||+.||++++. +|+....-|+++||++++. +-++--|..+-|
T Consensus        80 ~~~~~~~eNi~~~L~~~k~-~g~~~l~~i~~~DI~dg~~-~liLgLiW~li~  129 (513)
T 1rt8_A           80 LDNFKCIENNNVVINSAKA-MGGISITNIGAGDILEGRE-HLILGLVWQIIR  129 (513)
T ss_dssp             CCHHHHHHHHHHHHHHHHH-HSSCCCSSCCHHHHHTTCH-HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHH-cCCCccCCcCHHhhhcCCH-HHHHHHHHHHHH
Confidence            4579999999999999997 9998888899999999876 444444445554

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=96.95  E-value=0.00072  Score=53.64  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=37.6

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      ..|+.+|||+.||+++++ +|++-+. .+++|+++++. +.++--|..+.|
T Consensus        89 ~~~~~~eNv~~aL~~~k~-~g~~l~~-I~~~DIvdg~~-~liLgLlw~li~  136 (275)
T 1aoa_A           89 TPFIIQENLNLALNSASA-IGCHVVN-IGAEDLRAGKP-HLVLGLLWQIIK  136 (275)
T ss_dssp             CHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTTCH-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH-cCCcccC-CCHHHHHcCcH-HHHHHHHHHHHH
Confidence            369999999999999997 9998877 49999999875 444444444443

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=96.73  E-value=0.0015  Score=51.12  Aligned_cols=47  Identities=17%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHH
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEII  103 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~  103 (128)
                      +.|+.+||++.||+++++ +|++-+. ++++|+++++- +.++--|..+.
T Consensus        69 ~~~~~~eNv~~aL~~~k~-~g~~l~~-I~~~DIvdg~~-~liL~Llw~li  115 (246)
T 1dxx_A           69 TRVHALNNVNKALRVLQN-NNVDLVN-IGSTDIVDGNH-KLTLGLIWNII  115 (246)
T ss_dssp             SHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTTCH-HHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH-cCCcccc-CCHHHhhcccH-HHHHHHHHHHH
Confidence            479999999999999997 9999877 89999999864 44444444443

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=96.57  E-value=0.0028  Score=49.59  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=38.8

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      +.|+.+|||+.||+++++ +|++.+.. +++|+++++- +.++--|..|-|
T Consensus        75 ~~~~~~eNv~~aL~~~k~-~g~~lv~I-~~~DIvdG~~-kliLgLlW~li~  122 (245)
T 2wa7_A           75 FRQMQLENVSVALEFLDR-ESIKLVSI-DSKAIVDGNL-KLILGLVWTLIL  122 (245)
T ss_dssp             SHHHHHHHHHHHHHHHHH-TTCCCCSC-CHHHHHTTCH-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH-cCCcccCC-CHHHhhCCCH-HHHHHHHHHHHH
Confidence            469999999999999998 99987765 8999999874 555555555555

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.52  E-value=0.0021  Score=49.09  Aligned_cols=60  Identities=17%  Similarity=0.172  Sum_probs=48.4

Q ss_pred             cccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccc
Q psy610            4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFET   83 (128)
Q Consensus         4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT   83 (128)
                      .++| |+.|.|.+             .+     +|   ...|+|..+.   .|..++|+..|.+++++ +||++  -+..
T Consensus        49 aayC-QLmd~L~P-------------gs-----V~---l~KVkf~a~~---e~e~~~N~k~lQ~af~k-~gV~k--~ipV  100 (159)
T 1wyo_A           49 AAYC-QFMDMLFP-------------GC-----VH---LRKVKFQAKL---EHEYIHNFKVLQAAFKK-MGVDK--IIPV  100 (159)
T ss_dssp             HHHH-HHHHHHST-------------TS-----SC---TTSCCTTCCS---SHHHHHHHHHHHHHHHH-HTCCC--CCCH
T ss_pred             HHHH-HHHHHHcc-------------CC-----Cc---HhhhccCCCC---hHHHHHHHHHHHHHHHH-cCCCC--ccCH
Confidence            5789 99999854             12     23   5678877664   59999999999999998 99997  4888


Q ss_pred             cccccccC
Q psy610           84 DDLIMRKN   91 (128)
Q Consensus        84 ~DL~e~kn   91 (128)
                      +.|+-+|-
T Consensus       101 ~kLvkgk~  108 (159)
T 1wyo_A          101 EKLVKGKF  108 (159)
T ss_dssp             HHHTTTCS
T ss_pred             HHHhcCCc
Confidence            99999885

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=96.45  E-value=0.001  Score=48.71  Aligned_cols=61  Identities=21%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .+++| |+.|.|.+             .+     +|   ...|+|.++   +.|..++|+..|.+++++ +||+..  +.
T Consensus        31 Ga~yC-qlmd~l~P-------------g~-----v~---l~KVkf~a~---~e~e~~~N~k~lq~af~k-~gV~k~--i~   82 (123)
T 2qjz_A           31 GAAYC-QFMDMLFP-------------GS-----IA---LKKVKFQAK---LEHEYIQNFKILQAGFKR-MGVDKI--IP   82 (123)
T ss_dssp             SHHHH-HHHHHHST-------------TS-----SC---GGGCCTTCC---SHHHHHHHHHHHHHHHHH-HTCCCC--CC
T ss_pred             hHHHH-HHHHHHcc-------------CC-----Cc---HHHhccCCC---ChHHHHHHHHHHHHHHHH-cCCCCc--cC
Confidence            36789 99999854             12     23   456777655   359999999999999998 999974  78


Q ss_pred             ccccccccC
Q psy610           83 TDDLIMRKN   91 (128)
Q Consensus        83 T~DL~e~kn   91 (128)
                      .+.|+-+|-
T Consensus        83 v~kLvkgk~   91 (123)
T 2qjz_A           83 VDKLVKGKF   91 (123)
T ss_dssp             HHHHTTCCH
T ss_pred             HHHHHcCCc
Confidence            888888884

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=96.37  E-value=0.0035  Score=48.76  Aligned_cols=48  Identities=21%  Similarity=0.156  Sum_probs=40.2

Q ss_pred             CChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           54 GTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        54 ~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      ..|+.+|||+.+|+++++ +|++-+.. +++|++++.- +.++--|..|.|
T Consensus        69 ~~~~~~eNv~~aL~~~k~-~g~~l~~I-~~~DIvdg~~-k~iLgLlw~li~  116 (245)
T 1sh5_A           69 MRFHKLQNVQIALDYLRH-RQVKLVNI-RNDDIADGNP-KLTLGLIWTIIL  116 (245)
T ss_dssp             SHHHHHHHHHHHHHHHHH-TTCCCCSC-CHHHHHTTCH-HHHHHHHHHHHH
T ss_pred             chHHHHHhHHHHHHHHHH-cCCcccCC-ChHhhhcccH-HHHHHHHHHHHH
Confidence            579999999999999997 99998887 9999999864 666666666665

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=95.10  E-value=0.024  Score=48.62  Aligned_cols=49  Identities=10%  Similarity=0.092  Sum_probs=39.2

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      .+.|+.+|||+.+|+++++ +||+-+. ++++|+++++- +.++--|..+.|
T Consensus       343 ~~r~~~~eNv~~al~~~~~-~gv~lv~-i~~~DIvdg~~-~~~LgLlW~li~  391 (513)
T 1rt8_A          343 MMRFKAVENCNYAVDLGKN-QGFSLVG-IQGADITDGSR-TLTLALVWQMMR  391 (513)
T ss_dssp             CCHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTTCH-HHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHH-cCceeec-cchhhhhcCCc-hhhHHHHHHHHH
Confidence            3579999999999999997 9998776 99999999863 555555555555

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=93.95  E-value=0.07  Score=43.54  Aligned_cols=49  Identities=22%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      .+.|+.+|||+.+|+++++ +||+-+. -...|++++ |.+.++-.|..|-|
T Consensus       124 ~~r~~kleNvn~aL~~lk~-~gv~lv~-I~~~DIvdG-n~kliLgLlW~Li~  172 (296)
T 3f7p_A          124 RMRFHKLQNVQIALDYLRH-RQVKLVN-IRNDDIADG-NPKLTLGLIWTIIL  172 (296)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-TTCCCTT-CCHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             cChhhhhhhHHHHHHHHHH-hCccccC-CChhhhhcc-chHHHHHHHHHhhc
Confidence            3579999999999999997 9997654 577899998 55777666666766

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=90.48  E-value=0.73  Score=40.63  Aligned_cols=49  Identities=16%  Similarity=0.144  Sum_probs=39.8

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      ...|+.++||+.+|++++. .||+-+. -.+.|++++ |.+.++--|..|-|
T Consensus        60 ~~~~~~~eN~~~~l~~~~~-~g~~~~~-i~~~di~~g-~~~~~l~l~w~l~~  108 (863)
T 1sjj_A           60 KMRVHKISNVNKALDFIAS-KGVKLVS-IGAEEIVDG-NVKMTLGMIWTIIL  108 (863)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-TTCCCTT-CCSHHHHTT-CHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHHHHH-cCCccCC-CChHHhhcC-CHHHHHHHHHHHHH
Confidence            4579999999999999997 9997654 578899988 55777777777776

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=80.70  E-value=1.4  Score=31.97  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=34.3

Q ss_pred             ChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhH---HHHHHHHHH
Q psy610           55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKH---VILCLLEII  103 (128)
Q Consensus        55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~---Vv~cL~~l~  103 (128)
                      ....++|....|+.+|+ +|++-  +-..+|++|. |++.   ++.||+..+
T Consensus        67 ~~d~~~Na~~ais~Ark-lG~~~--~l~pEDIve~-~pK~ilt~va~l~~~~  114 (124)
T 1wjo_A           67 EDDKHNNAKYAVSMARR-IGARV--YALPEDLVEV-KPKMVMTVFACLMGRG  114 (124)
T ss_dssp             HHHHHHHHHHHHHHHHH-TCCSC--CCCHHHHHHT-CTTTTTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCc--ccCHHHHhcC-cchhhHHHHHHHHHHH
Confidence            36778999999999998 99985  7789999988 4454   445555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1ujoa_	144	a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta	8e-11
d1h67a_	108	a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T	4e-08
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	2e-05

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 8e-11
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 33  HSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNE 92
              ++      PVK         F   + V+ F+  +    GV +  +F+T DL   K+ 
Sbjct: 49  LVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAED-YGVIKTDMFQTVDLYEGKDM 107

Query: 93  KHVILCLLEI 102
             V   L+ +
Sbjct: 108 AAVQRTLMAL 117

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.0 bits (109), Expect = 4e-08
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 37  ISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVI 96
           I+ L    V+ +       +   +N+ NF+   +   GV    +FE +DL    N   V 
Sbjct: 38  INKLQPGSVQKVN-DPVQNWHKLENIGNFLRAIKH-YGVKPHDIFEANDLFENTNHTQVQ 95

Query: 97  LCLLEI 102
             L+ +
Sbjct: 96  STLIAL 101

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.2 bits (91), Expect = 2e-05
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 14  VRRYAEEHMAKRQAQGKDVHSI---------AISVLNLPPVKHLPGAKPGTFFARDNVSN 64
            +++ EE +                       +       +  +  +    F   DN++ 
Sbjct: 16  AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINK 75

Query: 65  FIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS 104
           F+ +     G+ E   FE  D+   KN   VI C+  +  
Sbjct: 76  FLDFIHGI-GLPEIFHFELTDIYEGKNLPKVIYCIHALSY 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	99.88
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	99.79
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	95.03
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	86.19
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	85.92

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.9e-24  Score=160.55  Aligned_cols=80  Identities=21%  Similarity=0.251  Sum_probs=67.3

Q ss_pred             cccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCccccccc
Q psy610            4 LFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFET   83 (128)
Q Consensus         4 ~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFqT   83 (128)
                      ++|| ++||.|.+             ..++          .++...+.+.+.|++||||++||+||++ |||++.+||||
T Consensus        44 vvLC-kL~N~l~P-------------~~i~----------~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~   98 (144)
T d1ujoa_          44 VILS-KLVNSLYP-------------EGSK----------PVKVPENPPSMVFKQMEQVAQFLKAAED-YGVIKTDMFQT   98 (144)
T ss_dssp             HHHH-HHHHHHSC-------------TTTC----------CSCCCSSCCCSHHHHHHHHHHHHHHHHH-HTCCSSSCCCH
T ss_pred             hhHH-HHHHHHcC-------------CCCC----------CccccCCCcchhHHHHHHHHHHHHHHHH-hCCCcccccch
Confidence            6899 99999954             1221          2333344556789999999999999997 99999999999


Q ss_pred             cccccccChhHHHHHHHHHHc-cccC
Q psy610           84 DDLIMRKNEKHVILCLLEIIS-GEKF  108 (128)
Q Consensus        84 ~DL~e~kn~~~Vv~cL~~l~R-a~~~  108 (128)
                      +||||+||+++|+.||++||| |...
T Consensus        99 ~DL~e~kn~~~Vi~cL~~L~r~a~~~  124 (144)
T d1ujoa_          99 VDLYEGKDMAAVQRTLMALGSLAVTK  124 (144)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999 8554

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.88  E-value=7.9e-24  Score=150.53  Aligned_cols=76  Identities=22%  Similarity=0.368  Sum_probs=63.9

Q ss_pred             ccccchHHHhhHHHHHHHHHHhhhhcCCcccccceeccCCCCcccCCCCCCCChhhHhhHHHHHHHHHhcCCCCcccccc
Q psy610            3 PLFFCPQHANNVRRYAEEHMAKRQAQGKDVHSIAISVLNLPPVKHLPGAKPGTFFARDNVSNFIGWSRRGLGVFECLLFE   82 (128)
Q Consensus         3 ~~vlC~qhAN~v~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~~~~~FkardNIsnFL~~crk~~GV~e~~LFq   82 (128)
                      .++|| ++||.|.+             .+++            +.+  .++.+|++||||++||+||+. |||++.++|+
T Consensus        31 Gv~LC-~L~N~l~p-------------g~i~------------ki~--~~~~~f~~~eNI~~FL~~~~~-~Gv~~~~lF~   81 (108)
T d1h67a_          31 GVILC-ELINKLQP-------------GSVQ------------KVN--DPVQNWHKLENIGNFLRAIKH-YGVKPHDIFE   81 (108)
T ss_dssp             CSHHH-HHHHHHST-------------TSST------------TCC--CTTSSHHHHHHHHHHHHHHHH-HTSCGGGSCC
T ss_pred             chhHH-HHHHHHHh-------------cCCC------------ccC--CCcchhHHHHHHHHHHHHHHH-hCCCcccCCC
Confidence            37899 99999854             1221            111  234589999999999999997 9999999999


Q ss_pred             ccccccccChhHHHHHHHHHHc-ccc
Q psy610           83 TDDLIMRKNEKHVILCLLEIIS-GEK  107 (128)
Q Consensus        83 T~DL~e~kn~~~Vv~cL~~l~R-a~~  107 (128)
                      |+||||++|+++|+.||++||| |+.
T Consensus        82 ~~DL~e~kn~~~V~~cL~aL~r~a~~  107 (108)
T d1h67a_          82 ANDLFENTNHTQVQSTLIALASQAKT  107 (108)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999 764

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.79  E-value=3.5e-20  Score=137.18  Aligned_cols=61  Identities=23%  Similarity=0.353  Sum_probs=56.3

Q ss_pred             CCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc-cccCCCCCCC
Q psy610           53 PGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS-GEKFEISKTP  114 (128)
Q Consensus        53 ~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R-a~~~g~~~~g  114 (128)
                      ...|++||||+.||+||++ +||++.++|+|+||||++|+++|+.||.+|+| ++++|+..|.
T Consensus        64 ~~~~~~~eNi~~fL~~~~~-~gv~~~~~f~~~DL~e~~n~~~V~~~l~~l~~~~~~~~~~~p~  125 (159)
T d1p2xa_          64 ELQFRHSDNINKFLDFIHG-IGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPL  125 (159)
T ss_dssp             SCCTTHHHHHHHHHHHHHH-TTCCGGGCCCHHHHSSCSCHHHHHHHHHHHHHHHHTTTSSCCC
T ss_pred             cchHHHHHHHHHHHHHHHH-cCCCccccCchHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            3579999999999999997 99999999999999999999999999999999 9988876443

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.02  Score=39.33  Aligned_cols=47  Identities=19%  Similarity=0.282  Sum_probs=39.0

Q ss_pred             ChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      .|...+|+..+|+++++ .|+.-..+ .++|++++ |.+.++.-+..+-|
T Consensus        70 ~~~~~~N~~~~L~~~k~-~gi~l~~i-~~~DIvdG-~~k~iL~Lvw~li~  116 (131)
T d1aoaa1          70 PFIIQENLNLALNSASA-IGCHVVNI-GAEDLRAG-KPHLVLGLLWQIIK  116 (131)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCCTTC-CHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-hccccCCC-ChhhhhcC-CHHHHHHHHHHHHH
Confidence            59999999999999997 99987665 89999987 55777766666665

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.42  Score=31.96  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=35.4

Q ss_pred             ChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           55 TFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        55 ~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      .+...+|+...|+++++ +|++.  .-..+|++++. .+.+..-+..|-+
T Consensus        67 ~~~~~~N~~~al~~~~~-lgi~~--~i~~eDI~~gn-~k~iL~~i~~L~~  112 (124)
T d1wjoa_          67 EDDKHNNAKYAVSMARR-IGARV--YALPEDLVEVK-PKMVMTVFACLMG  112 (124)
T ss_dssp             HHHHHHHHHHHHHHHHH-TCCSC--CCCHHHHHHTC-TTTTTHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHH-hCCcc--cCCHHHccCCC-chHHHHHHHHHHH
Confidence            57889999999999998 99974  34899999874 4666555555544

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.92  E-value=0.71  Score=30.34  Aligned_cols=50  Identities=22%  Similarity=0.147  Sum_probs=41.5

Q ss_pred             CCCChhhHhhHHHHHHHHHhcCCCCccccccccccccccChhHHHHHHHHHHc
Q psy610           52 KPGTFFARDNVSNFIGWSRRGLGVFECLLFETDDLIMRKNEKHVILCLLEIIS  104 (128)
Q Consensus        52 ~~~~FkardNIsnFL~~crk~~GV~e~~LFqT~DL~e~kn~~~Vv~cL~~l~R  104 (128)
                      ....|...+|+...|+++++ .|+.-.. ...+|++++ |.+.++..|..|.|
T Consensus        60 ~~~~~~k~eN~~~aL~~~~~-~~~~l~~-i~~~dI~~G-n~k~iL~llw~L~~  109 (120)
T d1sh5a1          60 GRMRFHKLQNVQIALDYLRH-RQVKLVN-IRNDDIADG-NPKLTLGLIWTIIL  109 (120)
T ss_dssp             CCSHHHHHHHHHHHHHHHHH-TTCCCCS-CCHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH-hcccccC-CcHHhhccC-cHHHHHHHHHHHHH
Confidence            34579999999999999997 8997655 489999988 66888888888876