Psyllid ID: psy6111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLKPYTASTT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccEEccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDaevetkstptidvarrlkpytastt
Flexible Loop (DISEMBL)
mkdiykdrkkfsKQVFqvassdlvnmgITVVSytlkdirddegylkslgmartaevkrdarigeaeakkdarIKEAMAEEEKMAARFVNDTEIAKAQrdfeikkatydaevetkstptidvarrlkpytastt
Low Complexity Region (SEG)
MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIkeamaeeekmaaRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLKPYTASTT
Disordered region (IsUnstruct)
*************QVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGM***********************************************************************************
Disordered Region (DISOPRED)
MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSL*********************************************AKAQRD*EI************************PY*****
Disordered Region (DISEMBL)
MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLKPYTASTT
Disordered Region (DISPRO)
MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLKPYT****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLKPYTASTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
O61491	426	Flotillin-1 OS=Drosophila	yes	N/A	0.857	0.267	0.807	4e-50
Q9Z1E1	428	Flotillin-1 OS=Rattus nor	yes	N/A	0.939	0.292	0.650	2e-41
O08917	428	Flotillin-1 OS=Mus muscul	yes	N/A	0.939	0.292	0.650	2e-41
Q5RBL4	427	Flotillin-1 OS=Pongo abel	yes	N/A	0.939	0.292	0.642	3e-41
Q08DN8	427	Flotillin-1 OS=Bos taurus	yes	N/A	0.939	0.292	0.642	3e-41
Q7YR41	427	Flotillin-1 OS=Pan troglo	yes	N/A	0.939	0.292	0.642	3e-41
Q5TM70	427	Flotillin-1 OS=Macaca mul	yes	N/A	0.939	0.292	0.642	3e-41
Q767L6	427	Flotillin-1 OS=Sus scrofa	yes	N/A	0.939	0.292	0.642	3e-41
O75955	427	Flotillin-1 OS=Homo sapie	yes	N/A	0.939	0.292	0.642	3e-41
O13127	423	Flotillin-1 OS=Carassius	N/A	N/A	0.857	0.269	0.675	1e-39

>sp|O61491|FLOT1_DROME Flotillin-1 OS=Drosophila melanogaster GN=Flo PE=2 SV=1

 Score =  196 bits (498), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 109/114 (95%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSKQVF+VASSDL NMGITVVSYT+KD+RD+EGYL+SLGMARTAEVKRDA
Sbjct: 120 VEEIYKDRKKFSKQVFEVASSDLANMGITVVSYTIKDLRDEEGYLRSLGMARTAEVKRDA 179

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA+ +A IKEA+AEE++MAARF+NDT+IAKAQRDFE+KKA YD EV+TK
Sbjct: 180 RIGEAEARAEAHIKEAIAEEQRMAARFLNDTDIAKAQRDFELKKAAYDVEVQTK 233

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.
Drosophila melanogaster (taxid: 7227)

>sp|Q9Z1E1|FLOT1_RAT Flotillin-1 OS=Rattus norvegicus GN=Flot1 PE=2 SV=2

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/126 (65%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+ +++ E+AKAQRD+E+KKATYD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQCLSEIEMAKAQRDYELKKATYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Rattus norvegicus (taxid: 10116)

>sp|O08917|FLOT1_MOUSE Flotillin-1 OS=Mus musculus GN=Flot1 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/126 (65%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+ +++ E+AKAQRD+E+KKATYD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQCLSEIEMAKAQRDYELKKATYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Mus musculus (taxid: 10090)

>sp|Q5RBL4|FLOT1_PONAB Flotillin-1 OS=Pongo abelii GN=FLOT1 PE=2 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Pongo abelii (taxid: 9601)

>sp|Q08DN8|FLOT1_BOVIN Flotillin-1 OS=Bos taurus GN=FLOT1 PE=2 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Bos taurus (taxid: 9913)

>sp|Q7YR41|FLOT1_PANTR Flotillin-1 OS=Pan troglodytes GN=FLOT1 PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Pan troglodytes (taxid: 9598)

>sp|Q5TM70|FLOT1_MACMU Flotillin-1 OS=Macaca mulatta GN=FLOT1 PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Macaca mulatta (taxid: 9544)

>sp|Q767L6|FLOT1_PIG Flotillin-1 OS=Sus scrofa GN=FLOT1 PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Sus scrofa (taxid: 9823)

>sp|O75955|FLOT1_HUMAN Flotillin-1 OS=Homo sapiens GN=FLOT1 PE=1 SV=3

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
           RIGEAEAK+DA I+EA A++EK++A+++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct: 177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query: 121 VARRLK 126
           +A +L+
Sbjct: 236 LAYQLQ 241

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Homo sapiens (taxid: 9606)

>sp|O13127|FLOT1_CARAU Flotillin-1 OS=Carassius auratus GN=flot1 PE=1 SV=1

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 101/114 (88%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFS+QVF+VASSDL NMGI+VVSYTLKD+ DD+ YL SLG ARTA+V++DA
Sbjct: 117 VEEIYKDRKKFSEQVFKVASSDLFNMGISVVSYTLKDVHDDQDYLHSLGKARTAQVQKDA 176

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEA+ K+DA I+EA A +EK++A+++N+ E+AKAQRD+E+KKA YD EV TK
Sbjct: 177 RIGEAKNKRDAVIREANAIQEKVSAQYMNEIEMAKAQRDYELKKAVYDIEVCTK 230

May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.

Carassius auratus (taxid: 7957)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
157110506	413	flotillin-1 [Aedes aegypti] gi|108868380	0.857	0.276	0.859	1e-50
312379848	378	hypothetical protein AND_08208 [Anophele	0.857	0.301	0.859	1e-50
157131242	405	flotillin-1 [Aedes aegypti] gi|108871581	0.857	0.281	0.859	1e-50
170045542	412	flotillin-1 [Culex quinquefasciatus] gi|	0.857	0.276	0.859	2e-50
242019841	427	Flotillin-1, putative [Pediculus humanus	0.864	0.269	0.843	3e-50
340716314	426	PREDICTED: flotillin-1-like isoform 1 [B	0.857	0.267	0.833	5e-50
350396970	426	PREDICTED: flotillin-1-like isoform 1 [B	0.857	0.267	0.833	6e-50
380018471	639	PREDICTED: LOW QUALITY PROTEIN: flotilli	0.857	0.178	0.833	1e-49
383853066	634	PREDICTED: flotillin-1-like [Megachile r	0.857	0.179	0.833	2e-49
307199471	1191	Flotillin-1 [Harpegnathos saltator]	0.857	0.095	0.824	2e-49

>gi|157110506|ref|XP_001651132.1| flotillin-1 [Aedes aegypti] gi|108868380|gb|EAT32605.1| AAEL015235-PA, partial [Aedes aegypti]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 110/114 (96%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSKQVF+VASSDLVNMGITVVSYTLKDIRD+EGYLKSLGMARTAEVKRDA
Sbjct: 107 VEEIYKDRKKFSKQVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKSLGMARTAEVKRDA 166

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA+ DA IKEA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 167 RIGEAEARCDATIKEAIAEEQRMAARFLNDTEIAKAQRDFELKKAVYDVEVQTK 220

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379848|gb|EFR26008.1| hypothetical protein AND_08208 [Anopheles darlingi]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 110/114 (96%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSKQVF+VASSDLVNMGITVVSYTLKDIRD+EGYLKSLGMARTAEVKRDA
Sbjct: 72  VEEIYKDRKKFSKQVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKSLGMARTAEVKRDA 131

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA+ DA IKEA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 132 RIGEAEARCDATIKEAIAEEQRMAARFLNDTEIAKAQRDFELKKAVYDVEVQTK 185

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131242|ref|XP_001655833.1| flotillin-1 [Aedes aegypti] gi|108871581|gb|EAT35806.1| AAEL012046-PA [Aedes aegypti]

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 110/114 (96%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSKQVF+VASSDLVNMGITVVSYTLKDIRD+EGYLKSLGMARTAEVKRDA
Sbjct: 99  VEEIYKDRKKFSKQVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKSLGMARTAEVKRDA 158

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA+ DA IKEA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 159 RIGEAEARCDATIKEAIAEEQRMAARFLNDTEIAKAQRDFELKKAVYDVEVQTK 212

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045542|ref|XP_001850365.1| flotillin-1 [Culex quinquefasciatus] gi|167868539|gb|EDS31922.1| flotillin-1 [Culex quinquefasciatus]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 110/114 (96%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSKQVF+VASSDLVNMGITVVSYTLKDIRD+EGYLKSLGMARTAEVKRDA
Sbjct: 99  VEEIYKDRKKFSKQVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKSLGMARTAEVKRDA 158

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA+ DA IKEA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 159 RIGEAEARCDATIKEAIAEEQRMAARFLNDTEIAKAQRDFELKKAVYDVEVQTK 212

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019841|ref|XP_002430367.1| Flotillin-1, putative [Pediculus humanus corporis] gi|212515491|gb|EEB17629.1| Flotillin-1, putative [Pediculus humanus corporis]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/115 (84%), Positives = 111/115 (96%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSK VF+VASSDLVNMGITVVSYTLKDIRD+EGYLKSLG ARTAEVKRDA
Sbjct: 120 VEEIYKDRKKFSKHVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKSLGKARTAEVKRDA 179

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKS 115
           RIGEAEA++DA+IKEA+AEEE+MAARF+NDTEIAKAQRDFE+KKA YD EV+TK+
Sbjct: 180 RIGEAEARRDAQIKEAIAEEERMAARFLNDTEIAKAQRDFELKKAVYDVEVQTKN 234

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716314|ref|XP_003396644.1| PREDICTED: flotillin-1-like isoform 1 [Bombus terrestris]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 112/114 (98%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSK+VF+VASSDLVNMGITVVSYTLKDIRD+EGYLK+LGMARTAEVKRDA
Sbjct: 120 VEEIYKDRKKFSKEVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKALGMARTAEVKRDA 179

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA++DA+I+EA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 180 RIGEAEARRDAQIREAIAEEQRMAARFLNDTEIAKAQRDFELKKAAYDVEVQTK 233

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396970|ref|XP_003484723.1| PREDICTED: flotillin-1-like isoform 1 [Bombus impatiens]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 112/114 (98%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSK+VF+VASSDLVNMGITVVSYTLKDIRD+EGYLK+LGMARTAEVKRDA
Sbjct: 120 VEEIYKDRKKFSKEVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKALGMARTAEVKRDA 179

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA++DA+I+EA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 180 RIGEAEARRDAQIREAIAEEQRMAARFLNDTEIAKAQRDFELKKAAYDVEVQTK 233

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018471|ref|XP_003693151.1| PREDICTED: LOW QUALITY PROTEIN: flotillin-1-like [Apis florea]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 112/114 (98%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSK+VF+VASSDLVNMGITVVSYTLKDIRD+EGYLK+LGMARTAEVKRDA
Sbjct: 120 VEEIYKDRKKFSKEVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKALGMARTAEVKRDA 179

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA++DA+I+EA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 180 RIGEAEARRDAQIREAIAEEQRMAARFLNDTEIAKAQRDFELKKAAYDVEVQTK 233

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853066|ref|XP_003702045.1| PREDICTED: flotillin-1-like [Megachile rotundata]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 112/114 (98%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSK+VF+VASSDLVNMGITVVSYTLKDIRD+EGYLK+LGMARTAEVKRDA
Sbjct: 120 VEEIYKDRKKFSKEVFEVASSDLVNMGITVVSYTLKDIRDEEGYLKALGMARTAEVKRDA 179

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA++DA+I+EA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 180 RIGEAEARRDAQIREAIAEEQRMAARFLNDTEIAKAQRDFELKKAAYDVEVQTK 233

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199471|gb|EFN80084.1| Flotillin-1 [Harpegnathos saltator]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 112/114 (98%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
           +++IYKDRKKFSK+VF+VASSDLVNMGITVVSYTLKDIRD+EGYL++LGMARTAEVKRDA
Sbjct: 120 VEEIYKDRKKFSKEVFEVASSDLVNMGITVVSYTLKDIRDEEGYLQALGMARTAEVKRDA 179

Query: 61  RIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK 114
           RIGEAEA++DA+I+EA+AEE++MAARF+NDTEIAKAQRDFE+KKA YD EV+TK
Sbjct: 180 RIGEAEARRDAQIREAIAEEQRMAARFLNDTEIAKAQRDFELKKAAYDVEVQTK 233

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
FB|FBgn0024754	426	Flo-1 "Flotillin-1" [Drosophil	0.857	0.267	0.728	3.3e-40
UNIPROTKB|Q08DN8	427	FLOT1 "Flotillin-1" [Bos tauru	0.939	0.292	0.595	1.7e-34
UNIPROTKB|E2QSE3	427	FLOT1 "Uncharacterized protein	0.939	0.292	0.595	1.7e-34
UNIPROTKB|A2AB10	252	FLOT1 "Flotillin-1" [Homo sapi	0.939	0.496	0.595	1.7e-34
UNIPROTKB|B0V109	357	FLOT1 "Flotillin-1" [Homo sapi	0.939	0.350	0.595	1.7e-34
UNIPROTKB|B0V110	182	FLOT1 "Flotillin-1" [Homo sapi	0.939	0.686	0.595	1.7e-34
UNIPROTKB|B0V111	231	FLOT1 "Flotillin-1" [Homo sapi	0.939	0.541	0.595	1.7e-34
UNIPROTKB|O75955	427	FLOT1 "Flotillin-1" [Homo sapi	0.939	0.292	0.595	1.7e-34
UNIPROTKB|Q767L6	427	FLOT1 "Flotillin-1" [Sus scrof	0.939	0.292	0.595	1.7e-34
UNIPROTKB|Q5RBL4	427	FLOT1 "Flotillin-1" [Pongo abe	0.939	0.292	0.595	1.7e-34

FB|FBgn0024754 Flo-1 "Flotillin-1" [Drosophila melanogaster (taxid:7227)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 83/114 (72%), Positives = 97/114 (85%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDRKKFSKQVF+VASSDL NMGITVVSYT+KD+RD+EGYL+SLGMARTAEVKRDA
Sbjct:   120 VEEIYKDRKKFSKQVFEVASSDLANMGITVVSYTIKDLRDEEGYLRSLGMARTAEVKRDA 179

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETK 114
             RIGEAEA+ +A I            RF+NDT+IAKAQRDFE+KKA YD EV+TK
Sbjct:   180 RIGEAEARAEAHIKEAIAEEQRMAARFLNDTDIAKAQRDFELKKAAYDVEVQTK 233

GO:0016600 "flotillin complex" evidence=NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q08DN8 FLOT1 "Flotillin-1" [Bos taurus (taxid:9913)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:   117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query:   121 VARRLK 126
             +A +L+
Sbjct:   236 LAYQLQ 241

GO:0005768 "endosome" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0034451 "centriolar satellite" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0007409 "axonogenesis" evidence=IEA

UNIPROTKB|E2QSE3 FLOT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:   117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query:   121 VARRLK 126
             +A +L+
Sbjct:   236 LAYQLQ 241

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0034451 "centriolar satellite" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0007409 "axonogenesis" evidence=IEA

GO:0005768 "endosome" evidence=IEA

UNIPROTKB|A2AB10 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:   117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query:   121 VARRLK 126
             +A +L+
Sbjct:   236 LAYQLQ 241

GO:0007409 "axonogenesis" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

UNIPROTKB|B0V109 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:    47 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 106

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   107 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 165

Query:   121 VARRLK 126
             +A +L+
Sbjct:   166 LAYQLQ 171

GO:0007409 "axonogenesis" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

UNIPROTKB|B0V110 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:    47 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 106

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   107 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 165

Query:   121 VARRLK 126
             +A +L+
Sbjct:   166 LAYQLQ 171

GO:0007409 "axonogenesis" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

UNIPROTKB|B0V111 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:    47 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 106

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   107 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 165

Query:   121 VARRLK 126
             +A +L+
Sbjct:   166 LAYQLQ 171

GO:0007409 "axonogenesis" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

UNIPROTKB|O75955 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:   117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query:   121 VARRLK 126
             +A +L+
Sbjct:   236 LAYQLQ 241

GO:0007409 "axonogenesis" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0008180 "signalosome" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005901 "caveola" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0005815 "microtubule organizing center" evidence=IDA

GO:0034451 "centriolar satellite" evidence=IDA

UNIPROTKB|Q767L6 FLOT1 "Flotillin-1" [Sus scrofa (taxid:9823)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:   117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query:   121 VARRLK 126
             +A +L+
Sbjct:   236 LAYQLQ 241

GO:0005768 "endosome" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0034451 "centriolar satellite" evidence=IEA

GO:0016600 "flotillin complex" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0007409 "axonogenesis" evidence=IEA

UNIPROTKB|Q5RBL4 FLOT1 "Flotillin-1" [Pongo abelii (taxid:9601)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 75/126 (59%), Positives = 99/126 (78%)

Query:     1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA 60
             +++IYKDR+KFS+QVF+VASSDLVNMGI+VVSYTLKDI DD+ YL SLG ARTA+V++DA
Sbjct:   117 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA 176

Query:    61 RIGEAEAKKDARIXXXXXXXXXXXXRFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTID 120
             RIGEAEAK+DA I            +++++ E+AKAQRD+E+KKA YD EV T+     D
Sbjct:   177 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQA-D 235

Query:   121 VARRLK 126
             +A +L+
Sbjct:   236 LAYQLQ 241

GO:0005768 "endosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z1E1	FLOT1_RAT	No assigned EC number	0.6507	0.9398	0.2920	yes	N/A
Q767L6	FLOT1_PIG	No assigned EC number	0.6428	0.9398	0.2927	yes	N/A
Q5TM70	FLOT1_MACMU	No assigned EC number	0.6428	0.9398	0.2927	yes	N/A
Q5RBL4	FLOT1_PONAB	No assigned EC number	0.6428	0.9398	0.2927	yes	N/A
Q7YR41	FLOT1_PANTR	No assigned EC number	0.6428	0.9398	0.2927	yes	N/A
O75955	FLOT1_HUMAN	No assigned EC number	0.6428	0.9398	0.2927	yes	N/A
O08917	FLOT1_MOUSE	No assigned EC number	0.6507	0.9398	0.2920	yes	N/A
O61491	FLOT1_DROME	No assigned EC number	0.8070	0.8571	0.2676	yes	N/A
Q08DN8	FLOT1_BOVIN	No assigned EC number	0.6428	0.9398	0.2927	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
cd03399	128	cd03399, Band_7_flotillin, Band_7_flotillin: a sub	3e-17
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	4e-12
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	2e-07
smart00244	160	smart00244, PHB, prohibitin homologues	6e-07
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	2e-05
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	5e-04

>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score = 71.8 bits (177), Expect = 3e-17
 Identities = 25/52 (48%), Positives = 39/52 (75%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR 52
           +++IY+DR KF++QV +V + DL  MG+ + S+T+KDI D +GYL +LG A 
Sbjct: 77  VEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGDAE 128

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Length = 128

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 61.4 bits (149), Expect = 4e-12
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDD-------EGYLKSLGMART 53
           ++++ +DR  F++ V +V   DL  MG+ + S  + DI D          YL +LG  R 
Sbjct: 157 VEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRI 216

Query: 54  AEVKRDARIGEAEAKKDARIKEAMAEEE----KMAARFVNDTEIAKAQRDFEIKKATYDA 109
           A+V +DA I E EA+K+  I  A A  +    ++        + A+  R+ +I  A  +A
Sbjct: 217 AQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEA 276

Query: 110 EVETKS 115
           EV    
Sbjct: 277 EVAAWK 282

Length = 548

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 17/79 (21%), Positives = 40/79 (50%)

Query: 3   DIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARI 62
           ++  +R++ + ++ ++        G+ V    +KDI   +   +++     AE ++ A+I
Sbjct: 105 ELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKI 164

Query: 63  GEAEAKKDARIKEAMAEEE 81
            EAE ++ A I  A A ++
Sbjct: 165 IEAEGERQAAILLAEAAKQ 183

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 6/99 (6%)

Query: 4   IYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIG 63
              D KK        A +D V    T+    +K   D   Y + L   R      DA   
Sbjct: 34  FIDDVKKVDL----RAQTDDVPPQETITKDNVKVSVDAVVYYRVLDPLRAVYRVLDADYA 89

Query: 64  EAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEI 102
             E      ++  +   ++     + D     ++   E 
Sbjct: 90  VIEQLAQTTLRSVIG--KRTLDELLTDQREKISENIREE 126

prohibitin homologues. Length = 160

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA 51
           + ++ +DR + + +V +    DL   GI VV   +KDI   E   +++   
Sbjct: 70  LDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR-D 59
           + ++  +R++ +++V +    +L   G+ +    + DI       +++   + AE +  +
Sbjct: 108 LDELLSNREEIAQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEE 167

Query: 60  ARIGEAEAKK 69
           A I  AEA+ 
Sbjct: 168 AEIERAEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG2668|consensus	428		99.96
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.73
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	99.27
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	99.27
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	99.25
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	99.12
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.07
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	99.04
KOG2620|consensus	301		99.02
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	98.96
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	98.92
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	98.68
PRK11029	334	FtsH protease regulator HflC; Provisional	98.68
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	98.59
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	98.58
PRK10930	419	FtsH protease regulator HflK; Provisional	98.45
smart00244	160	PHB prohibitin homologues. prohibitin homologues	98.06
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	98.0
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	97.73
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	97.34
KOG2621|consensus	288		97.08
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	97.06
PF13421	211	Band_7_1: SPFH domain-Band 7 family	92.63
KOG3083|consensus	271		91.99
KOG3090|consensus	290		88.93
KOG2962|consensus	322		84.73
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	80.04

>KOG2668|consensus

Probab=99.96  E-value=3.7e-30  Score=214.28  Aligned_cols=125  Identities=54%  Similarity=0.704  Sum_probs=123.0

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCch--HHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEG--YLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMA   78 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~g--yi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a   78 (133)
                      |||||+||+.|+..|++.+.+||.+|||.|+||||+|+.|.+|  ||++||+..+++++++|+|++|||+||+.|+++.+
T Consensus       115 vEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~  194 (428)
T KOG2668|consen  115 VEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATG  194 (428)
T ss_pred             HHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhH
Confidence            6999999999999999999999999999999999999999996  99999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHhcHHHHHHhhHHHHHHhhcCchHHHHHhcC
Q psy6111          79 EEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLK  126 (133)
Q Consensus        79 ~~ea~~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A~~~a~~~~  126 (133)
                      ..+.+.+++.++++|+.++|+++++++.++.++++.+++| ++||.|-
T Consensus       195 ~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA-~lAyelq  241 (428)
T KOG2668|consen  195 LTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEA-DLAYELQ  241 (428)
T ss_pred             HHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHH-HHHHHHH
Confidence            9999999999999999999999999999999999999999 9999884

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.73  E-value=2.5e-17  Score=144.25  Aligned_cols=126  Identities=29%  Similarity=0.395  Sum_probs=116.5

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCC-------chHHHhcCchHhhHHHhhhHHHHHHhhhHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDD-------EGYLKSLGMARTAEVKRDARIGEAEAKKDARI   73 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~-------~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I   73 (133)
                      |++|++||..|...|.+.+.+||.+|||.|+||.|+|+.|+       +|||+++|++.++++.+++.|++.|++++++|
T Consensus       157 ~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i  236 (548)
T COG2268         157 VEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEI  236 (548)
T ss_pred             HHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHH
Confidence            57899999999999999999999999999999999999998       99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh---------------hHHHHHHHhcHHHHHHhhHHHHHHhhcCchHHHHHhcCc
Q psy6111          74 KEAMAEEEKMAARFV---------------NDTEIAKAQRDFEIKKATYDAEVETKSTPTIDVARRLKP  127 (133)
Q Consensus        74 ~~A~a~~ea~~ak~~---------------ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A~~~a~~~~~  127 (133)
                      ..+++.+++..++..               -.+.++..++.....+++...+.+.++..| +.++.++.
T Consensus       237 ~i~~a~~~a~~~e~~v~~q~~~~~a~~~~~~ki~~a~~e~e~~~~~ae~~~~a~~a~~~A-eq~~~~~~  304 (548)
T COG2268         237 AIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILA-EQAIQEEK  304 (548)
T ss_pred             HHHhhhhHHHHHhhhhhcccccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            999999999988887               345668889999999999999999999999 77776654

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=99.27  E-value=9.7e-11  Score=91.97  Aligned_cols=83  Identities=23%  Similarity=0.239  Sum_probs=76.2

Q ss_pred             ChhHHHh-HHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHH
Q psy6111           1 MKDIYKD-RKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAE   79 (133)
Q Consensus         1 VEei~~d-R~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~   79 (133)
                      +++++++ |..+++.|.+.+.++|.+||+.|.+++|++|..|..+.+++..+..++.++.|.+.++++++++.+..++++
T Consensus       110 ~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~  189 (242)
T cd03405         110 LIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADAD  189 (242)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4688888 999999999999999999999999999999999999999999999999999999999999988888777777


Q ss_pred             HHHH
Q psy6111          80 EEKM   83 (133)
Q Consensus        80 ~ea~   83 (133)
                      +++.
T Consensus       190 ~~~~  193 (242)
T cd03405         190 RERT  193 (242)
T ss_pred             HHHH
Confidence            6653

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.27  E-value=6.8e-11  Score=94.90  Aligned_cols=90  Identities=22%  Similarity=0.314  Sum_probs=83.8

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE   80 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~   80 (133)
                      +++++++|..|+..|.+.+...|..||+.|++++|++|..|..+.++|...+.|+..+.|.+.+|++.+...|..|++++
T Consensus       102 l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea  181 (262)
T cd03407         102 LDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADA  181 (262)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHhhhhhH
Q psy6111          81 EKMAARFVND   90 (133)
Q Consensus        81 ea~~ak~~ae   90 (133)
                      ++...+++++
T Consensus       182 ~a~~~~Aeg~  191 (262)
T cd03407         182 EAKRLQGVGA  191 (262)
T ss_pred             HHHHHhhhhH
Confidence            8876655544

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=99.25  E-value=4.9e-11  Score=92.00  Aligned_cols=84  Identities=20%  Similarity=0.291  Sum_probs=78.5

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE   80 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~   80 (133)
                      +++++++|..|...|.+.+.++|.+||+.|+++.|++|+.|++|.+++...+.|+..++|.+.+|++++++.+..+++.+
T Consensus       103 ~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~aea~~  182 (215)
T cd03403         103 LDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLAEAAK  182 (215)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             HHHH
Q psy6111          81 EKMA   84 (133)
Q Consensus        81 ea~~   84 (133)
                      +...
T Consensus       183 ~~~~  186 (215)
T cd03403         183 QAAI  186 (215)
T ss_pred             HHcc
Confidence            6543

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=99.12  E-value=2.6e-10  Score=86.81  Aligned_cols=80  Identities=15%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhh---HHHHHHhhhHHHHHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDA---RIGEAEAKKDARIKEAM   77 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A---~Ia~AeA~rea~I~~A~   77 (133)
                      +++|+++|..|+..|.+.+..+|.+||+.|.++.|++|..|++|.++++.+++|+-....   .+.+|+++++..+.+|+
T Consensus       111 ~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~  190 (196)
T cd03401         111 AEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQEKQAAVIRAE  190 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999999999999999999999999999988877654322   34445555555544444


Q ss_pred             HHH
Q psy6111          78 AEE   80 (133)
Q Consensus        78 a~~   80 (133)
                      ++.
T Consensus       191 gea  193 (196)
T cd03401         191 GEA  193 (196)
T ss_pred             hhh
Confidence            443

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.07  E-value=1.7e-10  Score=82.98  Aligned_cols=52  Identities=48%  Similarity=0.853  Sum_probs=49.7

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR   52 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~   52 (133)
                      +++++++|..|...|.+.+.++|.+|||+|.+++|++|.++++|+++||+++
T Consensus        77 l~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~~~  128 (128)
T cd03399          77 VEEIYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGDAE  128 (128)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCCCC
Confidence            4799999999999999999999999999999999999999999999999863

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=99.04  E-value=5e-09  Score=83.66  Aligned_cols=83  Identities=23%  Similarity=0.347  Sum_probs=74.9

Q ss_pred             ChhHHHh-HHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHH
Q psy6111           1 MKDIYKD-RKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAM   77 (133)
Q Consensus         1 VEei~~d-R~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~   77 (133)
                      +++++++ |..|...|.+.+...+..|  |+.|.++.|++|..|++|.++|.....|+..+++.+.+|++.++..+..|+
T Consensus       132 ~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~  211 (266)
T cd03404         132 LDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKAR  211 (266)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3688887 9999999999999999966  999999999999999999999999999999999999999998888888877


Q ss_pred             HHHHHH
Q psy6111          78 AEEEKM   83 (133)
Q Consensus        78 a~~ea~   83 (133)
                      ++.++.
T Consensus       212 ~ea~~~  217 (266)
T cd03404         212 GEAARI  217 (266)
T ss_pred             hHHHHH
Confidence            765553

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>KOG2620|consensus

Probab=99.02  E-value=6.2e-10  Score=90.73  Aligned_cols=109  Identities=20%  Similarity=0.296  Sum_probs=94.1

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE   80 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~   80 (133)
                      ++.+|+.|+.++..|.+.+...+.-||+++..+.|.||..|++.-.+|.+..-|+.+++|.|-++|++|++.|..|++++
T Consensus       116 LD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek  195 (301)
T KOG2620|consen  116 LDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEK  195 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchh
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhH----HHHHHHhcHHHHHHhhHHH
Q psy6111          81 EKMAARFVND----TEIAKAQRDFEIKKATYDA  109 (133)
Q Consensus        81 ea~~ak~~ae----~~IA~a~~~~~~k~Ae~~~  109 (133)
                      ++...-.++.    ..|+...++.-+-+|....
T Consensus       196 ~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a  228 (301)
T KOG2620|consen  196 ESKILASEGIARQRQNIADGEAEAILAFADAVA  228 (301)
T ss_pred             hhHHhhhHHHHHHHHHHHhhHHHHHHHHhhccc
Confidence            9865544433    3445566666666655433

>TIGR01932 hflC HflC protein

Probab=98.96  E-value=6.8e-09  Score=85.88  Aligned_cols=103  Identities=27%  Similarity=0.289  Sum_probs=79.6

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE   80 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~   80 (133)
                      +++|.++|..|...|.+.+..++.+||+.|.++.|++|..|+.|.+++..+..++.++.|..-++++++++....++++.
T Consensus       166 ~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~  245 (317)
T TIGR01932       166 AMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEY  245 (317)
T ss_pred             ccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999988888888777776665554444


Q ss_pred             HHHHhhhhhHHHHHHHhcHHHHHHhhHHHH
Q psy6111          81 EKMAARFVNDTEIAKAQRDFEIKKATYDAE  110 (133)
Q Consensus        81 ea~~ak~~ae~~IA~a~~~~~~k~Ae~~~e  110 (133)
                      ++.       ..++++.++..+.+|+.+++
T Consensus       246 e~~-------~~~aeA~a~a~~~~Aegea~  268 (317)
T TIGR01932       246 EVR-------KILSEAYRTARIIKGEGDAE  268 (317)
T ss_pred             HHH-------HHHHHHHHHHHHHHhhHHHH
Confidence            443       33334444444445544444

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>TIGR01933 hflK HflK protein

Probab=98.92  E-value=2.6e-08  Score=79.47  Aligned_cols=82  Identities=22%  Similarity=0.278  Sum_probs=73.2

Q ss_pred             ChhHHH-hHHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHH
Q psy6111           1 MKDIYK-DRKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAM   77 (133)
Q Consensus         1 VEei~~-dR~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~   77 (133)
                      ++++++ +|..+...|.+.+...|..|  |+.|+++.|++|..|....+++.....|+-.+.+.+.+|++++...+..|+
T Consensus       105 l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~  184 (261)
T TIGR01933       105 MDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKAR  184 (261)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368888 89999999999999999965  999999999999999999999999999998888889899888888777776


Q ss_pred             HHHHH
Q psy6111          78 AEEEK   82 (133)
Q Consensus        78 a~~ea   82 (133)
                      ++.+.
T Consensus       185 ~~a~~  189 (261)
T TIGR01933       185 GDAQR  189 (261)
T ss_pred             HHHHH
Confidence            66654

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.1e-07  Score=76.71  Aligned_cols=89  Identities=24%  Similarity=0.282  Sum_probs=81.9

Q ss_pred             hhHHHhHH-HHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy6111           2 KDIYKDRK-KFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEE   80 (133)
Q Consensus         2 Eei~~dR~-~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~   80 (133)
                      ++++++|. .++..+.+.+...+..||+.|..++|+++..|..+..++-....|+..+++.|-+|++.+...+..|++++
T Consensus       132 ~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~  211 (291)
T COG0330         132 DELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEA  211 (291)
T ss_pred             HHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhH
Confidence            58889999 99999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHhhhhhH
Q psy6111          81 EKMAARFVND   90 (133)
Q Consensus        81 ea~~ak~~ae   90 (133)
                      ++.....++.
T Consensus       212 ~a~~i~aea~  221 (291)
T COG0330         212 EAAIILAEAE  221 (291)
T ss_pred             HHHHHHHHHH
Confidence            8766555554

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=98.68  E-value=1.8e-07  Score=78.49  Aligned_cols=107  Identities=25%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             ChhHHH-hHHHHHHHHHHHHHH---------------------------------------HHhhccceEEEeeeccccC
Q psy6111           1 MKDIYK-DRKKFSKQVFQVASS---------------------------------------DLVNMGITVVSYTLKDIRD   40 (133)
Q Consensus         1 VEei~~-dR~~f~~~V~e~a~~---------------------------------------dl~~~GL~i~s~~I~di~D   40 (133)
                      ++++++ +|..+...|.+.+..                                       +|.+||++|.++.|++|..
T Consensus       136 ldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~  215 (334)
T PRK11029        136 VKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINL  215 (334)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCC
Confidence            367886 699999999998874                                       3579999999999999999


Q ss_pred             CchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcHHHHHHhhHHHHHHhh
Q psy6111          41 DEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETK  114 (133)
Q Consensus        41 ~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a~~ea~~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~  114 (133)
                      |..+.+++-..+.|+.++.|.+-++++++++....++++.++....       |++.++..+.+|+.+++....
T Consensus       216 P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~-------AeA~~~a~i~~aegeA~a~~~  282 (334)
T PRK11029        216 PTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTL-------AEAERQGRIMRGEGDAEAAKL  282 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999999988887777765433       233344444455554444433

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=98.59  E-value=1.4e-07  Score=69.45  Aligned_cols=67  Identities=25%  Similarity=0.391  Sum_probs=61.4

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHh-hhHHHHHHhh
Q psy6111           2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR-DARIGEAEAK   68 (133)
Q Consensus         2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~-~A~Ia~AeA~   68 (133)
                      ++++++|..|...|.+.+.+.|..+|++|.+++|.++..+.+|.+++.....+.... ++++.+|+++
T Consensus       111 ~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~~~~~~~a~~e  178 (179)
T PF01145_consen  111 EEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQQAEIERAEAE  178 (179)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            589999999999999999999999999999999999999999999999999888888 7777666654

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=98.58  E-value=1e-06  Score=72.31  Aligned_cols=94  Identities=15%  Similarity=0.189  Sum_probs=81.2

Q ss_pred             hhHHH-hHHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhh--------hHHHHHHhhhH
Q psy6111           2 KDIYK-DRKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRD--------ARIGEAEAKKD   70 (133)
Q Consensus         2 Eei~~-dR~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~--------A~Ia~AeA~re   70 (133)
                      +++++ +|+.+...|.+.+..+|..|  |+.|.++.|+++..|....+++ ..+.++..+.        |.+.+||++|.
T Consensus       116 deVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~  194 (280)
T cd03406         116 QEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERK  194 (280)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHH
Confidence            57787 79999999999999999987  9999999999999999999999 7999999999        99999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhc
Q psy6111          71 ARIKEAMAEEEKMAARFVNDTEIAKAQR   98 (133)
Q Consensus        71 a~I~~A~a~~ea~~ak~~ae~~IA~a~~   98 (133)
                      ..|.+|+++.  +.+++.-+..|.+...
T Consensus       195 ~~~~~a~~~~--~~~~~~~~~~~~~~~~  220 (280)
T cd03406         195 KAVIEAEKVA--QVAKILFGQKVMEKET  220 (280)
T ss_pred             HHHHHHHHHh--hHHHHHHHHHHHHHHH
Confidence            9988776554  4566666666655443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=98.45  E-value=3.2e-06  Score=72.90  Aligned_cols=99  Identities=20%  Similarity=0.228  Sum_probs=82.1

Q ss_pred             ChhHHHh-HHHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHH
Q psy6111           1 MKDIYKD-RKKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAM   77 (133)
Q Consensus         1 VEei~~d-R~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~   77 (133)
                      +++++++ |..+...|.+.+...|..+  |++|.+++|++|..|....+++.....|+..+++.|.+|++.+...+-+|+
T Consensus       201 ldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~  280 (419)
T PRK10930        201 MDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRAN  280 (419)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678874 9999999999999999985  999999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHh--hhhhHHHHHHHhcH
Q psy6111          78 AEEEKMAA--RFVNDTEIAKAQRD   99 (133)
Q Consensus        78 a~~ea~~a--k~~ae~~IA~a~~~   99 (133)
                      ++++....  ++..+..|..++-+
T Consensus       281 gea~~ii~~AeAyr~~~i~~AeGd  304 (419)
T PRK10930        281 GQAQRILEEARAYKAQTILEAQGE  304 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh
Confidence            77776543  44445555444433

>smart00244 PHB prohibitin homologues

Probab=98.06  E-value=6.2e-06  Score=59.77  Aligned_cols=50  Identities=22%  Similarity=0.338  Sum_probs=46.4

Q ss_pred             ChhHHH-hHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCc
Q psy6111           1 MKDIYK-DRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGM   50 (133)
Q Consensus         1 VEei~~-dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~   50 (133)
                      ++++++ .|..|.+.|.+.+.++|.++|+.|.+++|++|+.|+.|.+++..
T Consensus       108 ~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~  158 (160)
T smart00244      108 LDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQ  158 (160)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHh
Confidence            368898 69999999999999999999999999999999999999998754

prohibitin homologues

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=98.00  E-value=1e-05  Score=55.29  Aligned_cols=50  Identities=26%  Similarity=0.399  Sum_probs=46.6

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCch
Q psy6111           2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMA   51 (133)
Q Consensus         2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~   51 (133)
                      +++.++|..|.+.|.+.+..+|..+|++|.++.|.+|..+..|.++++..
T Consensus        71 ~~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          71 DELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            57889999999999999999999999999999999999999999987653

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=97.73  E-value=5.8e-05  Score=53.73  Aligned_cols=49  Identities=16%  Similarity=0.321  Sum_probs=44.8

Q ss_pred             ChhHHH-hHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcC
Q psy6111           1 MKDIYK-DRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLG   49 (133)
Q Consensus         1 VEei~~-dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg   49 (133)
                      ++++++ +|..|.+.|.+.+.+.|.++|+.|.+++|++|.-|..+.+++-
T Consensus        72 ~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~  121 (124)
T cd03400          72 AEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIE  121 (124)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHH
Confidence            357886 7999999999999999999999999999999999999988764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=97.34  E-value=0.00031  Score=53.57  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             ChhHHHh--HHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcC
Q psy6111           1 MKDIYKD--RKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLG   49 (133)
Q Consensus         1 VEei~~d--R~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg   49 (133)
                      +++++.+  |..++..|.+.+.++|.+|||+|.++.|++|.-|..+.+++.
T Consensus       154 ~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~  204 (207)
T cd03408         154 LAVMLLAANRDELSKAVREALAPWFASFGLELVSVYIESISYPDEVQKLID  204 (207)
T ss_pred             CeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHH
Confidence            3567777  999999999999999999999999999999999998777664

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2621|consensus

Probab=97.08  E-value=0.0019  Score=53.38  Aligned_cols=71  Identities=18%  Similarity=0.259  Sum_probs=62.3

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHH
Q psy6111           2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDAR   72 (133)
Q Consensus         2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~   72 (133)
                      .||.++|+.++.++.-.+..--..||++|..+.|+||+-|...-.+|..+.-|..+.+|.+--|+.++.+.
T Consensus       162 ~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akviaaege~~as  232 (288)
T KOG2621|consen  162 SEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKVIAAEGEKKAS  232 (288)
T ss_pred             HHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhHHHHHhhhHHH
Confidence            48999999999999999999999999999999999999999988888877777777777777777766655

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=97.06  E-value=0.0013  Score=51.92  Aligned_cols=61  Identities=15%  Similarity=0.128  Sum_probs=54.4

Q ss_pred             HhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHH
Q psy6111           6 KDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAE   66 (133)
Q Consensus         6 ~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~Ae   66 (133)
                      .+|+.++..+.+.+...|..||+.|..+.|+++.-++.+.+++-..+.|+....|+--.++
T Consensus       118 ~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~Ae~~~~Ar~~~~~  178 (219)
T cd03402         118 GNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQASAIIAARRKIVE  178 (219)
T ss_pred             cCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999999999999999888888887777654444

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=92.63  E-value=0.28  Score=38.66  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHh
Q psy6111           2 KDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKS   47 (133)
Q Consensus         2 Eei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~a   47 (133)
                      -+|...-..+++.|.+.+.+++..+||+|.+|.|.+|+-|...-+.
T Consensus       157 ~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~  202 (211)
T PF13421_consen  157 LDIPAHLDEISEALKEKLNPEFERYGIELVDFGIESISFPEEVQKA  202 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHH
Confidence            3677788899999999999999999999999999999888754443

>KOG3083|consensus

Probab=91.99  E-value=0.23  Score=40.43  Aligned_cols=80  Identities=16%  Similarity=0.293  Sum_probs=59.4

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhh-hH--HHHHHhhhHHHHHHHHHH
Q psy6111           3 DIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRD-AR--IGEAEAKKDARIKEAMAE   79 (133)
Q Consensus         3 ei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~-A~--Ia~AeA~rea~I~~A~a~   79 (133)
                      |++..|+-.+.+|.......-..+||.++.+.|..++=-..+-++...+++|+-..+ |+  +.+|+.+|.+.+-.|+++
T Consensus       138 eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGd  217 (271)
T KOG3083|consen  138 ELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGD  217 (271)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccc
Confidence            788999999999999999999999999999999998877777777777776653221 11  444555555555555554


Q ss_pred             HHH
Q psy6111          80 EEK   82 (133)
Q Consensus        80 ~ea   82 (133)
                      .++
T Consensus       218 s~a  220 (271)
T KOG3083|consen  218 SKA  220 (271)
T ss_pred             hHH
Confidence            444

>KOG3090|consensus

Probab=88.93  E-value=2  Score=35.12  Aligned_cols=81  Identities=14%  Similarity=0.283  Sum_probs=66.1

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHh-hhH--HHHHHhhhHHHHHHHHHH
Q psy6111           3 DIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR-DAR--IGEAEAKKDARIKEAMAE   79 (133)
Q Consensus         3 ei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~-~A~--Ia~AeA~rea~I~~A~a~   79 (133)
                      +++..|+..+-.|.+.+...-.++.+-++-+.|..++=...|-.+...+++|.-.. +|.  +.+|+-++...|-+|+++
T Consensus       149 qLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGE  228 (290)
T KOG3090|consen  149 QLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGE  228 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccc
Confidence            57889999999999999999999999999999999998888988887777764322 222  667788888888888776


Q ss_pred             HHHH
Q psy6111          80 EEKM   83 (133)
Q Consensus        80 ~ea~   83 (133)
                      .++.
T Consensus       229 aksA  232 (290)
T KOG3090|consen  229 AKSA  232 (290)
T ss_pred             hHHH
Confidence            6653

>KOG2962|consensus

Probab=84.73  E-value=21  Score=29.49  Aligned_cols=111  Identities=12%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHhhc--cceEEEeeeccccCCchHHHhcCchHhhH-----HHhhhHHHHHHhhhHHHHHHHHHHHH
Q psy6111           9 KKFSKQVFQVASSDLVNM--GITVVSYTLKDIRDDEGYLKSLGMARTAE-----VKRDARIGEAEAKKDARIKEAMAEEE   81 (133)
Q Consensus         9 ~~f~~~V~e~a~~dl~~~--GL~i~s~~I~di~D~~gyi~aLg~~~~A~-----v~~~A~Ia~AeA~rea~I~~A~a~~e   81 (133)
                      +..-+.+....+.||.+|  ||.|.++.+..-.=|...-.++..-....     +...-.+.+.+|+-+..-..-++++-
T Consensus       142 DqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~  221 (322)
T KOG2962|consen  142 DQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKN  221 (322)
T ss_pred             HHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888889999988  88888887765555555444432111110     01112234444444444445566777


Q ss_pred             HHHhhhhhHHHHHHHhcHHHHHHhhHHHHHHhhcCchH
Q psy6111          82 KMAARFVNDTEIAKAQRDFEIKKATYDAEVETKSTPTI  119 (133)
Q Consensus        82 a~~ak~~ae~~IA~a~~~~~~k~Ae~~~e~~~~~A~A~  119 (133)
                      ++.+++.-...+-+...+..+-.-+-..-..+.++.|.
T Consensus       222 AqVa~I~~qqkl~EKetekr~~eiE~~~~LarekskAD  259 (322)
T KOG2962|consen  222 AQVAKILMQQKLMEKETEKRISEIEDAAFLAREKSKAD  259 (322)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhhhcc
Confidence            77777776666665544444443333444444455543

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=80.04  E-value=3.4  Score=34.87  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=35.2

Q ss_pred             HhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhc
Q psy6111           6 KDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSL   48 (133)
Q Consensus         6 ~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aL   48 (133)
                      .+--.++..|.+.+.+++..+|+.|+||.|-+|+-|...-..+
T Consensus       188 an~~elsk~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~li  230 (345)
T COG4260         188 ANQMELSKYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALI  230 (345)
T ss_pred             hhHHHHHHHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHH
Confidence            3444577889999999999999999999999998877644443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
1win_A	143	Solution Structure Of The Band 7 Domain Of The Mous		1e-07

>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse Flotillin 2 Protein Length = 143

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTA 54
           ++ IY+DR +F+K V +VA+ D+  MGI ++S+T+KD+ D   YL SLG  +T+
Sbjct: 85  VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	7e-14

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 62.9 bits (153), Expect = 7e-14
 Identities = 24/57 (42%), Positives = 39/57 (68%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVK 57
           ++ IY+DR +F+K V +VA+ D+  MGI ++S+T+KD+ D   YL SLG  +T+   
Sbjct: 85  VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPS 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.29
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.29
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	97.94
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	97.89

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.29  E-value=9.4e-13  Score=96.10  Aligned_cols=58  Identities=41%  Similarity=0.701  Sum_probs=55.6

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHh
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR   58 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~   58 (133)
                      +++++++|+.|+..|.+.+.+++.+||++|.+++|++|.+|++|+++||+++.|++++
T Consensus        85 ldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~~~  142 (143)
T 1win_A           85 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS  142 (143)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcccc
Confidence            4799999999999999999999999999999999999999999999999999998765

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.29  E-value=6.5e-12  Score=94.66  Aligned_cols=78  Identities=28%  Similarity=0.361  Sum_probs=71.4

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHHHhhhHHHHHHhhhHHHHHHHHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAKKDARIKEAMA   78 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v~~~A~Ia~AeA~rea~I~~A~a   78 (133)
                      +++++++|+.|+..|.+.+.+.|.+||+.|++++|++|.+|++|.++|+....|+..++|.|.+|++++++.+..+++
T Consensus        75 l~ell~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a  152 (188)
T 3bk6_A           75 LDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREA  152 (188)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999988888888888888887666654

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=97.94  E-value=7.8e-06  Score=56.15  Aligned_cols=42  Identities=7%  Similarity=0.159  Sum_probs=39.6

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCc
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDE   42 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~   42 (133)
                      +++++++|+.|+..|.+.+.+.|.+||++|.+++|++|..|.
T Consensus        71 l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~  112 (113)
T 2rpb_A           71 LDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDPPK  112 (113)
T ss_dssp             TTHHHHCHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCC
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCC
Confidence            478999999999999999999999999999999999998774

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=97.89  E-value=1.2e-05  Score=57.54  Aligned_cols=52  Identities=15%  Similarity=0.279  Sum_probs=41.3

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR   52 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~   52 (133)
                      +++++++|+.++..|.+.+...+.+||++|.++.|++|..|..+.++|...+
T Consensus        80 ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~  131 (133)
T 4fvg_A           80 LSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEA  131 (133)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC---------
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHh
Confidence            3689999999999999999999999999999999999999999988885443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	6e-06

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (95), Expect = 6e-06
 Identities = 24/54 (44%), Positives = 39/54 (72%)

Query: 1   MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTA 54
           ++ IY+DR +F+K V +VA+ D+  MGI ++S+T+KD+ D   YL SLG  +T+
Sbjct: 85  VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.14

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.2e-11  Score=88.25  Aligned_cols=56  Identities=43%  Similarity=0.727  Sum_probs=53.3

Q ss_pred             ChhHHHhHHHHHHHHHHHHHHHHhhccceEEEeeeccccCCchHHHhcCchHhhHH
Q psy6111           1 MKDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEV   56 (133)
Q Consensus         1 VEei~~dR~~f~~~V~e~a~~dl~~~GL~i~s~~I~di~D~~gyi~aLg~~~~A~v   56 (133)
                      +++|+++|+.|...|.+.+.++|.+||++|.++.|+||.|+++|+++||+++.|.+
T Consensus        85 l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A~~  140 (143)
T d1wina_          85 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGP  140 (143)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCC
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHhhh
Confidence            47899999999999999999999999999999999999999999999999998754