Psyllid ID: psy6112

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MGSFMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLPK
cccccccccccccccccccEEEcccccccEEEEEcccEEEEEEEEEEEEEccccccccEEEEEcccccccccccEEEEEEEEEEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccccccccccEEEcccccEEEEEEcccEEEEEHHEcccccccccHcccEEEEEcccEEcccccEEEEEEEEEEEEccHHHHHHHHcccHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEEcEccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccc
mgsfmdavtpnlcwsqeeeplfgpqynAFKVLIKSGADMVLYYFQVAAEVaaplsqtkrvtmvssgsgelgaakltGEILTIVNVMdeegheqkhstkqnhisedEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELessvnrpaeAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLPK
MGSFMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEvaaplsqtkRVTMvssgsgelgaakltGEILTIVNVMDEEGHEQKhstkqnhiseDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQvassdlvnmgITVVSytlkdirddEGYLKSlgmartaevkrdarigeaeaqkdarIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRrkkelessvnrpaeaekyrIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLPK
MGSFMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIkeamaeeekmaaRFVNDTEIAKAQRDFEIKKATYDAEVETKRaeaelafelqaaKTKQRIKEEQMKiqviernqeiqvqeqeiqrrKKELESSVNRPAEAEKYRIEKLAQANKKRLMIeaeaeaeaIRLKGeaeaaaiaakaraeveIMTKKAEAWKDYREAAVIDMILESLPK
*******VTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMV*****ELGAAKLTGEILTIVNVM********************IQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGM*************************************************************************************************************************************************************AAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMIL*****
***FMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHI***EIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGM************************************FVNDTEIA*************************************************************************NRPAEAEKYRIEKLAQAN*********AEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLPK
********TPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDE************HISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQV*******************AEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLPK
*****DAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLPK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGSFMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVTMVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEVETKRAEAELAFELQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
O61491426 Flotillin-1 OS=Drosophila yes N/A 0.727 0.638 0.764 1e-110
O08917428 Flotillin-1 OS=Mus muscul yes N/A 0.724 0.633 0.654 6e-99
Q9Z1E1428 Flotillin-1 OS=Rattus nor yes N/A 0.724 0.633 0.650 9e-99
Q08DN8427 Flotillin-1 OS=Bos taurus yes N/A 0.724 0.634 0.650 1e-98
Q5RBL4427 Flotillin-1 OS=Pongo abel yes N/A 0.724 0.634 0.647 2e-98
Q7YR41427 Flotillin-1 OS=Pan troglo yes N/A 0.724 0.634 0.647 2e-98
Q5TM70427 Flotillin-1 OS=Macaca mul yes N/A 0.724 0.634 0.647 2e-98
Q767L6427 Flotillin-1 OS=Sus scrofa yes N/A 0.724 0.634 0.647 6e-98
O75955427 Flotillin-1 OS=Homo sapie yes N/A 0.724 0.634 0.643 1e-97
O13127423 Flotillin-1 OS=Carassius N/A N/A 0.724 0.640 0.623 3e-95
>sp|O61491|FLOT1_DROME Flotillin-1 OS=Drosophila melanogaster GN=Flo PE=2 SV=1 Back     alignment and function desciption
 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/272 (76%), Positives = 256/272 (94%)

Query: 103 SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTL 162
           SE EI +IALVTLEGHQRAIMGSM+VE+IYKDRKKFSKQVF+VASSDL NMGITVVSYT+
Sbjct: 95  SEAEINHIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSDLANMGITVVSYTI 154

Query: 163 KDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAK 222
           KD+RD+EGYL+SLGMARTAEVKRDARIGEAEA+ +A IKEA+AEE++MAARF+NDT+IAK
Sbjct: 155 KDLRDEEGYLRSLGMARTAEVKRDARIGEAEARAEAHIKEAIAEEQRMAARFLNDTDIAK 214

Query: 223 AQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQE 282
           AQRDFE+KKA YD EV+TK+AEAE+A+ELQAAKTKQRIKEEQM+++VIER QEI VQEQE
Sbjct: 215 AQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQRIKEEQMQVKVIERTQEIAVQEQE 274

Query: 283 IQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKA 342
           I RR++ELE+++ RPAEAEK+R+EKLA+ANK+R+++EAEAEAE+IR++GEAEA AIAAKA
Sbjct: 275 IMRRERELEATIRRPAEAEKFRMEKLAEANKQRVVMEAEAEAESIRIRGEAEAFAIAAKA 334

Query: 343 RAEVEIMTKKAEAWKDYREAAVIDMILESLPK 374
           +AE E M  KAEA+++YREAA+++M+L++LPK
Sbjct: 335 KAEAEQMAMKAEAYREYREAAMVEMLLDTLPK 366
May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles.
Drosophila melanogaster (taxid: 7227)
>sp|O08917|FLOT1_MOUSE Flotillin-1 OS=Mus musculus GN=Flot1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z1E1|FLOT1_RAT Flotillin-1 OS=Rattus norvegicus GN=Flot1 PE=2 SV=2 Back     alignment and function description
>sp|Q08DN8|FLOT1_BOVIN Flotillin-1 OS=Bos taurus GN=FLOT1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RBL4|FLOT1_PONAB Flotillin-1 OS=Pongo abelii GN=FLOT1 PE=2 SV=1 Back     alignment and function description
>sp|Q7YR41|FLOT1_PANTR Flotillin-1 OS=Pan troglodytes GN=FLOT1 PE=3 SV=1 Back     alignment and function description
>sp|Q5TM70|FLOT1_MACMU Flotillin-1 OS=Macaca mulatta GN=FLOT1 PE=3 SV=1 Back     alignment and function description
>sp|Q767L6|FLOT1_PIG Flotillin-1 OS=Sus scrofa GN=FLOT1 PE=3 SV=1 Back     alignment and function description
>sp|O75955|FLOT1_HUMAN Flotillin-1 OS=Homo sapiens GN=FLOT1 PE=1 SV=3 Back     alignment and function description
>sp|O13127|FLOT1_CARAU Flotillin-1 OS=Carassius auratus GN=flot1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
242019841427 Flotillin-1, putative [Pediculus humanus 0.727 0.637 0.801 1e-120
312379848378 hypothetical protein AND_08208 [Anophele 0.721 0.714 0.804 1e-117
340716314426 PREDICTED: flotillin-1-like isoform 1 [B 0.724 0.636 0.764 1e-116
157110506413 flotillin-1 [Aedes aegypti] gi|108868380 0.724 0.656 0.794 1e-116
157131242405 flotillin-1 [Aedes aegypti] gi|108871581 0.724 0.669 0.794 1e-116
170045542412 flotillin-1 [Culex quinquefasciatus] gi| 0.724 0.657 0.790 1e-116
328719750425 PREDICTED: flotillin-1-like [Acyrthosiph 0.716 0.630 0.769 1e-115
340716316429 PREDICTED: flotillin-1-like isoform 2 [B 0.727 0.634 0.756 1e-115
158285579435 AGAP007494-PA [Anopheles gambiae str. PE 0.727 0.625 0.780 1e-114
380018471 639 PREDICTED: LOW QUALITY PROTEIN: flotilli 0.724 0.424 0.775 1e-113
>gi|242019841|ref|XP_002430367.1| Flotillin-1, putative [Pediculus humanus corporis] gi|212515491|gb|EEB17629.1| Flotillin-1, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/272 (80%), Positives = 255/272 (93%)

Query: 103 SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTL 162
           SE+EIQNIALVTLEGHQRAIMGSM+VE+IYKDRKKFSK VF+VASSDLVNMGITVVSYTL
Sbjct: 95  SENEIQNIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKHVFEVASSDLVNMGITVVSYTL 154

Query: 163 KDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAK 222
           KDIRD+EGYLKSLG ARTAEVKRDARIGEAEA++DA+IKEA+AEEE+MAARF+NDTEIAK
Sbjct: 155 KDIRDEEGYLKSLGKARTAEVKRDARIGEAEARRDAQIKEAIAEEERMAARFLNDTEIAK 214

Query: 223 AQRDFEIKKATYDAEVETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQE 282
           AQRDFE+KKA YD EV+TK AEAE+AF LQAAKTKQRIKEEQM+I+V+ER+QEI VQEQE
Sbjct: 215 AQRDFELKKAVYDVEVQTKNAEAEMAFALQAAKTKQRIKEEQMQIKVVERSQEIAVQEQE 274

Query: 283 IQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMIEAEAEAEAIRLKGEAEAAAIAAKA 342
           I RR++ELE++V RPAEAEKYR+EKLA+AN+ R+++EAEAE+EAIR++GEAEA AI AKA
Sbjct: 275 ILRRERELEATVRRPAEAEKYRLEKLAEANRNRIILEAEAESEAIRVRGEAEAFAIQAKA 334

Query: 343 RAEVEIMTKKAEAWKDYREAAVIDMILESLPK 374
           +AE E M KKAEAW +YREAA+I+M+L+ LPK
Sbjct: 335 KAEAEQMAKKAEAWSEYREAAMIEMLLDVLPK 366

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312379848|gb|EFR26008.1| hypothetical protein AND_08208 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|340716314|ref|XP_003396644.1| PREDICTED: flotillin-1-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|157110506|ref|XP_001651132.1| flotillin-1 [Aedes aegypti] gi|108868380|gb|EAT32605.1| AAEL015235-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|157131242|ref|XP_001655833.1| flotillin-1 [Aedes aegypti] gi|108871581|gb|EAT35806.1| AAEL012046-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170045542|ref|XP_001850365.1| flotillin-1 [Culex quinquefasciatus] gi|167868539|gb|EDS31922.1| flotillin-1 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328719750|ref|XP_001951716.2| PREDICTED: flotillin-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|340716316|ref|XP_003396645.1| PREDICTED: flotillin-1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|158285579|ref|XP_308381.4| AGAP007494-PA [Anopheles gambiae str. PEST] gi|157020060|gb|EAA04642.4| AGAP007494-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|380018471|ref|XP_003693151.1| PREDICTED: LOW QUALITY PROTEIN: flotillin-1-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
FB|FBgn0024754426 Flo-1 "Flotillin-1" [Drosophil 0.727 0.638 0.566 2.4e-76
MGI|MGI:1100500428 Flot1 "flotillin 1" [Mus muscu 0.727 0.635 0.492 7.6e-64
RGD|70991428 Flot1 "flotillin 1" [Rattus no 0.727 0.635 0.492 7.6e-64
UNIPROTKB|B0V109357 FLOT1 "Flotillin-1" [Homo sapi 0.727 0.761 0.485 1.2e-63
UNIPROTKB|O75955427 FLOT1 "Flotillin-1" [Homo sapi 0.727 0.637 0.485 1.2e-63
UNIPROTKB|Q08DN8427 FLOT1 "Flotillin-1" [Bos tauru 0.727 0.637 0.485 1.6e-63
UNIPROTKB|Q5TM70427 FLOT1 "Flotillin-1" [Macaca mu 0.727 0.637 0.485 1.6e-63
UNIPROTKB|Q7YR41427 FLOT1 "Flotillin-1" [Pan trogl 0.727 0.637 0.485 1.6e-63
UNIPROTKB|E2QSE3427 FLOT1 "Uncharacterized protein 0.727 0.637 0.485 1.6e-63
UNIPROTKB|Q5RBL4427 FLOT1 "Flotillin-1" [Pongo abe 0.727 0.637 0.485 1.6e-63
FB|FBgn0024754 Flo-1 "Flotillin-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 154/272 (56%), Positives = 193/272 (70%)

Query:   103 SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTL 162
             SE EI +IALVTLEGHQRAIMGSM+VE+IYKDRKKFSKQVF+VASSDL NMGITVVSYT+
Sbjct:    95 SEAEINHIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSDLANMGITVVSYTI 154

Query:   163 KDIRDDEGYLKSLGMARTAEVKRDARIGEAEAQKDARIXXXXXXXXXXXXRFVNDTEIAK 222
             KD+RD+EGYL+SLGMARTAEVKRDARIGEAEA+ +A I            RF+NDT+IAK
Sbjct:   155 KDLRDEEGYLRSLGMARTAEVKRDARIGEAEARAEAHIKEAIAEEQRMAARFLNDTDIAK 214

Query:   223 AQRDFEIKKATYDAEVETKRXXXXXXXXXXXXKTKQRIKEEQMKXXXXXXXXXXXXXXXX 282
             AQRDFE+KKA YD EV+TK+            KTKQRIKEEQM+                
Sbjct:   215 AQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQRIKEEQMQVKVIERTQEIAVQEQE 274

Query:   283 XXXXKKELESSVNRPAEAEKYRIEKLAQANKKRLMIXXXXXXXXIRLKGXXXXXXXXXXX 342
                 ++ELE+++ RPAEAEK+R+EKLA+ANK+R+++        IR++G           
Sbjct:   275 IMRRERELEATIRRPAEAEKFRMEKLAEANKQRVVMEAEAEAESIRIRGEAEAFAIAAKA 334

Query:   343 XXXXXIMTKKAEAWKDYREAAVIDMILESLPK 374
                   M  KAEA+++YREAA+++M+L++LPK
Sbjct:   335 KAEAEQMAMKAEAYREYREAAMVEMLLDTLPK 366
GO:0016600 "flotillin complex" evidence=NAS
GO:0005198 "structural molecule activity" evidence=NAS
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
MGI|MGI:1100500 Flot1 "flotillin 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|70991 Flot1 "flotillin 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|B0V109 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O75955 FLOT1 "Flotillin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DN8 FLOT1 "Flotillin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TM70 FLOT1 "Flotillin-1" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q7YR41 FLOT1 "Flotillin-1" [Pan troglodytes (taxid:9598)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSE3 FLOT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBL4 FLOT1 "Flotillin-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q767L6FLOT1_PIGNo assigned EC number0.64700.72450.6346yesN/A
O08917FLOT1_MOUSENo assigned EC number0.65440.72450.6331yesN/A
O61491FLOT1_DROMENo assigned EC number0.76470.72720.6384yesN/A
Q5TM70FLOT1_MACMUNo assigned EC number0.64700.72450.6346yesN/A
Q08DN8FLOT1_BOVINNo assigned EC number0.65070.72450.6346yesN/A
Q9Z1E1FLOT1_RATNo assigned EC number0.65070.72450.6331yesN/A
Q5RBL4FLOT1_PONABNo assigned EC number0.64700.72450.6346yesN/A
Q7YR41FLOT1_PANTRNo assigned EC number0.64700.72450.6346yesN/A
O75955FLOT1_HUMANNo assigned EC number0.64330.72450.6346yesN/A
O32076YUAG_BACSUNo assigned EC number0.36890.87960.6463yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
cd03399128 cd03399, Band_7_flotillin, Band_7_flotillin: a sub 2e-27
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 7e-23
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 6e-10
smart00244160 smart00244, PHB, prohibitin homologues 2e-09
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 8e-09
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 6e-08
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 6e-06
pfam12037276 pfam12037, DUF3523, Domain of unknown function (DU 6e-04
pfam05262 489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 0.002
TIGR03319 514 TIGR03319, RNase_Y, ribonuclease Y 0.002
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.003
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 0.003
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 0.003
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|239493 cd03399, Band_7_flotillin, Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information 
 Score =  104 bits (262), Expect = 2e-27
 Identities = 42/98 (42%), Positives = 63/98 (64%)

Query: 82  IVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQ 141
            V V   E      + +    SE+EI+ +    LEGH RA++G+M+VE+IY+DR KF++Q
Sbjct: 31  QVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYEDRDKFAEQ 90

Query: 142 VFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMAR 179
           V +V + DL  MG+ + S+T+KDI D +GYL +LG A 
Sbjct: 91  VQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGDAE 128

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Length = 128
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
KOG2668|consensus428 100.0
COG2268548 Uncharacterized protein conserved in bacteria [Fun 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 99.97
PRK11029334 FtsH protease regulator HflC; Provisional 99.97
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 99.97
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 99.97
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 99.96
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 99.96
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 99.96
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 99.95
KOG2620|consensus301 99.95
PRK10930419 FtsH protease regulator HflK; Provisional 99.94
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 99.94
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.93
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.93
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.9
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.89
KOG2621|consensus288 99.88
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.83
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.7
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.52
KOG3090|consensus290 99.41
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.29
KOG3083|consensus271 99.27
KOG2668|consensus428 99.23
KOG2962|consensus322 98.78
PF13421211 Band_7_1: SPFH domain-Band 7 family 98.62
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 98.44
PTZ00491850 major vault protein; Provisional 98.34
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 97.36
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 96.98
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 96.92
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 96.65
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 96.54
PRK11029334 FtsH protease regulator HflC; Provisional 96.32
PRK10930419 FtsH protease regulator HflK; Provisional 94.55
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 92.31
KOG2620|consensus301 91.59
PRK01558 198 V-type ATP synthase subunit E; Provisional 89.77
PRK13454181 F0F1 ATP synthase subunit B'; Provisional 86.12
PRK01558 198 V-type ATP synthase subunit E; Provisional 86.01
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 85.91
PTZ00121 2084 MAEBL; Provisional 84.23
PRK09174204 F0F1 ATP synthase subunit B'; Validated 83.98
TIGR03321246 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. 83.74
PRK14474250 F0F1 ATP synthase subunit B; Provisional 83.33
PTZ00491 850 major vault protein; Provisional 83.12
PTZ00121 2084 MAEBL; Provisional 80.76
>KOG2668|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.5e-63  Score=463.94  Aligned_cols=357  Identities=44%  Similarity=0.558  Sum_probs=335.3

Q ss_pred             ceeecCCCceEeecCCCcccCcCCcceEEecCCceEEEcccceeEEeccCccccccee-eecCCCCccccceEEEEEEEE
Q psy6112           4 FMDAVTPNLCWSQEEEPLFGPQYNAFKVLIKSGADMVLYYFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTI   82 (374)
Q Consensus         4 ~~~k~~~~~~~v~~~~~~~g~~~G~~~~v~~pGl~f~iP~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~   82 (374)
                      .|+-|+||+||+     ++|  ||-....+-+|. |+||| +.+.++|+..+++.+.. .+.+.+++    +++|.++++
T Consensus         1 ~f~~~~~~~~l~-----itg--~g~~~~~lv~~~-wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegv----P~~vtgVaq   67 (428)
T KOG2668|consen    1 MFKVAGASQYLA-----ITG--GGIEDIKLVKKS-WVFPW-QQCTVFDVSPMTLTFKVENVMTSEGV----PFVVTGVAQ   67 (428)
T ss_pred             CCccCCccceEE-----eec--ccccCceecccc-eeeee-eeeeEEeecceeeeeecchhhcccCC----ceEeeeeEE
Confidence            478899999999     999  777677777775 99999 99999997776654433 23333333    788888998


Q ss_pred             Eeec--CchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEE
Q psy6112          83 VNVM--DEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSY  160 (374)
Q Consensus        83 ~rI~--~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v  160 (374)
                      ++|.  |+.+++.+|+++|+|++...|.+++..+|+||+|.++|+||+++||.||++|...|++.+..+|..|||.|.|+
T Consensus        68 vki~~~~~~elL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~  147 (428)
T KOG2668|consen   68 VKIRVDDADELLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSA  147 (428)
T ss_pred             EeeccCCHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEe
Confidence            8875  44688899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeccCch--hHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHH
Q psy6112         161 TLKDIRDDE--GYLKSLGMARTAEVKRDARIGEAEAQKDARIKEAMAEEEKMAARFVNDTEIAKAQRDFEIKKATYDAEV  238 (374)
Q Consensus       161 ~I~~I~~~~--~~~~a~~~~~~Ae~~r~A~i~~Aea~rea~i~~Aea~~~~~~a~~~~e~~iAea~~~~ei~~a~~~~~~  238 (374)
                      +|+|+.|.+  +|++|||+...++..++|+|..||+++++.|+++.+.++...+++.+++.|+.++|.++++++.++.+|
T Consensus       148 tiKdl~D~~g~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV  227 (428)
T KOG2668|consen  148 TIKDLVDVPGHEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEV  227 (428)
T ss_pred             EhhhhhcccchHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHh
Confidence            999999988  699999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH
Q psy6112         239 ETKRAEAELAFELQAAKTKQRIKEEQMKIQVIERNQEIQVQEQEIQRRKKELESSVNRPAEAEKYRIEKLAQANKKRLMI  318 (374)
Q Consensus       239 ~~a~a~a~~a~~~~~a~~~~~i~e~~~~~ev~e~~~~i~~~~~e~~~~e~e~eA~v~~~AeAe~~~~~~~AeA~~~~~~~  318 (374)
                      .+.+++|+.+|+++.++.++.|.+++.+++++++.++|.++++|+.++.++++|.++.||+|+.++.++.|||++.....
T Consensus       228 ~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~  307 (428)
T KOG2668|consen  228 NTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNK  307 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q psy6112         319 EAEAEAEAIRLKGEAEAAAIAAKARAEVEIMTKKAEAWKDYREAAVIDMILESLP  373 (374)
Q Consensus       319 ~AeAeA~~i~~~g~AeA~ai~~~~~AeAe~~~~~aea~~~~~~aa~~~~~~~~lp  373 (374)
                      .++|||+.||.+|+|||.+|.+.+.|||+.|+++|++|..|++++.+.|+|+.||
T Consensus       308 qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp  362 (428)
T KOG2668|consen  308 QAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALP  362 (428)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>KOG2621|consensus Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3090|consensus Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>KOG2668|consensus Back     alignment and domain information
>KOG2962|consensus Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>PRK13454 F0F1 ATP synthase subunit B'; Provisional Back     alignment and domain information
>PRK01558 V-type ATP synthase subunit E; Provisional Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B Back     alignment and domain information
>PRK14474 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
1win_A143 Solution Structure Of The Band 7 Domain Of The Mous 2e-16
>pdb|1WIN|A Chain A, Solution Structure Of The Band 7 Domain Of The Mouse Flotillin 2 Protein Length = 143 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 58/76 (76%)
Query: 106 EIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDI 165
           +I+N+ L TLEGH R+I+G+++VE IY+DR +F+K V +VA+ D+  MGI ++S+T+KD+
Sbjct: 63  DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122
Query: 166 RDDEGYLKSLGMARTA 181
            D   YL SLG  +T+
Sbjct: 123 YDKVDYLSSLGKTQTS 138

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 4e-20
2zuo_A861 MVP, major vault protein; repeat domains, protein- 5e-09
2zuo_A861 MVP, major vault protein; repeat domains, protein- 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 2e-04
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
 Score = 84.9 bits (210), Expect = 4e-20
 Identities = 40/102 (39%), Positives = 65/102 (63%)

Query: 83  VNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQV 142
           V +M E+        +    +  +I+N+ L TLEGH R+I+G+++VE IY+DR +F+K V
Sbjct: 40  VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLV 99

Query: 143 FQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVK 184
            +VA+ D+  MGI ++S+T+KD+ D   YL SLG  +T+   
Sbjct: 100 REVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPS 141
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.94
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.88
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.86
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.63
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.61
2zuo_A861 MVP, major vault protein; repeat domains, protein- 89.97
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
Probab=99.94  E-value=1.4e-26  Score=199.69  Aligned_cols=139  Identities=32%  Similarity=0.457  Sum_probs=125.1

Q ss_pred             ccceeEEeccCccccccee-eecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHh
Q psy6112          43 YFQVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRA  121 (374)
Q Consensus        43 ~i~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~  121 (374)
                      ||+++.++|+|++++|.++ .+.|.+++    +|.||++++|||.++|..+++++++|+|.+...+.+++.+++.++||+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v----~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~   78 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGV----ALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRS   78 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSC----EEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCC----EEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            6799999999999888765 33333332    688899999999977777788899999988899999999999999999


Q ss_pred             hhccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhhhhhhH
Q psy6112         122 IMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEVKR  185 (374)
Q Consensus       122 vig~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae~~r  185 (374)
                      ++|+|||++++++|+.|+..|++.++.++.+|||+|.+|+|++|+||++|+++|++++.|+..+
T Consensus        79 viG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~~~  142 (143)
T 1win_A           79 ILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS  142 (143)
T ss_dssp             HHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCCCC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999998753
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 4e-10
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 37/79 (46%), Positives = 59/79 (74%)

Query: 103 SEDEIQNIALVTLEGHQRAIMGSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTL 162
           +  +I+N+ L TLEGH R+I+G+++VE IY+DR +F+K V +VA+ D+  MGI ++S+T+
Sbjct: 60  NVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTI 119

Query: 163 KDIRDDEGYLKSLGMARTA 181
           KD+ D   YL SLG  +T+
Sbjct: 120 KDVYDKVDYLSSLGKTQTS 138

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.88
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.8e-23  Score=174.07  Aligned_cols=135  Identities=33%  Similarity=0.488  Sum_probs=121.8

Q ss_pred             ceeEEeccCccccccee-eecCCCCccccceEEEEEEEEEeecCchhhHHHhhhhccCCCHHHHHHHHHHHHhHHHHhhh
Q psy6112          45 QVAAEVAAPLSQTKRVT-MVSSGSGELGAAKLTGEILTIVNVMDEEGHEQKHSTKQNHISEDEIQNIALVTLEGHQRAIM  123 (374)
Q Consensus        45 ~~v~~v~~r~~~~~~~~-~~~s~~~~it~~~v~vd~~~~~rI~~~~~~~~~a~~~~l~~~~~~i~~~v~~~l~g~lR~vi  123 (374)
                      .++++||+++++++..+ .+.+.+++    +|.|+++++|||.++++.+.+++++|++.+...+..++.+++.++||+++
T Consensus         5 ~s~~rislr~~~l~~~~q~v~TkD~v----~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vi   80 (143)
T d1wina_           5 SSGQRISLEIMTLQPRCEDVETAEGV----ALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL   80 (143)
T ss_dssp             CCCCSCCCSCEEECCCEEEEECSSSC----EEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeEeeeeEEeecCCCceEECCCCC----EEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Confidence            35778999998877655 23344432    68888999999999999989999999999889999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhhhccCcEEeEEEeeeccCchhHHHHHhhhhhhhh
Q psy6112         124 GSMSVEDIYKDRKKFSKQVFQVASSDLVNMGITVVSYTLKDIRDDEGYLKSLGMARTAEV  183 (374)
Q Consensus       124 g~~tl~ei~~~R~~~~~~v~~~v~~~l~~~Gl~i~~v~I~~I~~~~~~~~a~~~~~~Ae~  183 (374)
                      |+||+++++++|+.|+..|.+.+..+|.+|||+|.++.|+||+||++|+++|++++.|.+
T Consensus        81 g~~~l~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A~~  140 (143)
T d1wina_          81 GTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGP  140 (143)
T ss_dssp             HHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCC
T ss_pred             ccccHHHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999998865