Psyllid ID: psy6121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MLTLSTDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGGRGGR
Secondary Structure (PSIPRED)
cEEEEEEEEcccccccccEEEEEEEccEEEEEEEcccccEEEEEEcccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHcccccccccEEEEEEccccEEEEEEcccccEEEEEEcccEEcccccccEEEEEEEHEEEcccccEEcEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mltlstdcwlgdgsdgsdyLNVAIKDGGVAINLKLAMGkldmyirpnrlrfddnqwhhLSIHRRIqegtgcgkeeekkkrredkveeeEDEKLEEEEMEEQKEEKKEKVEEEEVKEERreggrggr
Flexible Loop (DISEMBL)
mltlstdcwlgdgsdGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHrriqegtgcgkeeekkkrredkveeeedekleeeemeeqkeekkekveeeevkeerreggrggr
Low Complexity Region (SEG)
MLTLSTDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGkeeekkkrredkveeeedekleeeemeeqkeekkekveeeevkeerreGGRGGR
Disordered region (IsUnstruct)
*****TDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRI*************************************************************
Disordered Region (DISOPRED)
MLTLSTDCWLG**SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQ************************************************************
Disordered Region (DISEMBL)
MLTLSTDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT*********************************************************
Disordered Region (DISPRO)
MLTLSTDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEE*****************EEEE*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTLSTDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGRGGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
A1XQX8	1697	Neurexin-3a OS=Danio reri	no	N/A	0.563	0.041	0.315	2e-07
A1XQY1	1686	Neurexin-3b OS=Danio reri	no	N/A	0.563	0.042	0.315	2e-07
D0PRN3	1693	Neurexin-3 OS=Gallus gall	yes	N/A	0.563	0.041	0.315	2e-07
A1XQX2	1470	Neurexin-1b OS=Danio reri	no	N/A	0.444	0.038	0.321	2e-06
Q9Y4C0	1643	Neurexin-3 OS=Homo sapien	yes	N/A	0.539	0.041	0.315	2e-06
Q07310	1578	Neurexin-3 OS=Rattus norv	no	N/A	0.539	0.043	0.315	3e-06
Q6P9K9	1571	Neurexin-3 OS=Mus musculu	yes	N/A	0.539	0.043	0.315	3e-06
A1XQX0	1491	Neurexin-1a OS=Danio reri	no	N/A	0.444	0.037	0.321	5e-06
Q9ULB1	1477	Neurexin-1 OS=Homo sapien	yes	N/A	0.444	0.037	0.321	6e-06
Q28146	1530	Neurexin-1 OS=Bos taurus	yes	N/A	0.444	0.036	0.321	6e-06

>sp|A1XQX8|NR3AA_DANRE Neurexin-3a OS=Danio rerio GN=nrxn3a PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 2   LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
           +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct: 283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNSW 342

Query: 57  HHLSIHRRIQEGTGCG 72
           H + + R +++ +G G
Sbjct: 343 HDVKVTRNLRQHSGIG 358

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion.
Danio rerio (taxid: 7955)

>sp|A1XQY1|NR3BA_DANRE Neurexin-3b OS=Danio rerio GN=nrxn3b PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 2   LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
           +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct: 279 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 338

Query: 57  HHLSIHRRIQEGTGCG 72
           H + + R +++ +G G
Sbjct: 339 HDIKVTRNLRQHSGIG 354

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion.

Danio rerio (taxid: 7955)

>sp|D0PRN3|NRX3A_CHICK Neurexin-3 OS=Gallus gallus PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 2   LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
           +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct: 287 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 346

Query: 57  HHLSIHRRIQEGTGCG 72
           H + + R +++ +G G
Sbjct: 347 HDVKVTRNLRQHSGIG 362

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Gallus gallus (taxid: 9031)

>sp|A1XQX2|NR1BA_DANRE Neurexin-1b OS=Danio rerio GN=nrxn1b PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 37/56 (66%)

Query: 17  SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
           +DY+N+A+K+G V++ + L  G  +  + P   +F+DN+WH + + R +++ +G G
Sbjct: 296 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVG 351

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion.

Danio rerio (taxid: 7955)

>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 2   LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
           +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct: 283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 342

Query: 57  HHLSIHRRIQEGT 69
           H + + R +++ T
Sbjct: 343 HDVKVTRNLRQVT 355

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Homo sapiens (taxid: 9606)

>sp|Q07310|NRX3A_RAT Neurexin-3 OS=Rattus norvegicus GN=Nrxn3 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 2   LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
           +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct: 287 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 346

Query: 57  HHLSIHRRIQEGT 69
           H + + R +++ T
Sbjct: 347 HDVKVTRNLRQVT 359

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Rattus norvegicus (taxid: 10116)

>sp|Q6P9K9|NRX3A_MOUSE Neurexin-3 OS=Mus musculus GN=Nrxn3 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 2   LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
           +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct: 283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 342

Query: 57  HHLSIHRRIQEGT 69
           H + + R +++ T
Sbjct: 343 HDVKVTRNLRQVT 355

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Mus musculus (taxid: 10090)

>sp|A1XQX0|NR1AA_DANRE Neurexin-1a OS=Danio rerio GN=nrxn1a PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query: 17  SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
           +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ +G G
Sbjct: 308 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 363

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion.

Danio rerio (taxid: 7955)

>sp|Q9ULB1|NRX1A_HUMAN Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query: 17  SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
           +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ +G G
Sbjct: 328 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 383

Cell surface protein involved in cell-cell-interactions, excytosis of secretory granules and regulation of signal transmission. Function is isoform-specific. Alpha-type isoforms have a long N-terminus with six laminin G-like domains and play an important role in synaptic signal transmission. Alpha-type isoforms play a role in the regulation of calcium channel activity and Ca(2+)-triggered neurotransmitter release at synapses and at neuromuscular junctions. They play an important role in Ca(2+)-triggered exocytosis of secretory granules in pituitary gland. They may effect their functions at synapses and in endocrine cells via their interactions with proteins from the exocytotic machinery. Likewise, alpha-type isoforms play a role in regulating the activity of postsynaptic NMDA receptors, a subtype of glutamate-gated ion channels. Both alpha-type and beta-type isoforms may play a role in the formation or maintenance of synaptic junctions via their calcium-dependent interactions (via the extracellular domains) with neuroligin family members, CBLN1 or CBLN2. In vitro, triggers the de novo formation of presynaptic structures. May be involved in specification of excitatory synapses. Alpha-type isoforms were first identified as receptors for alpha-latroxin from spider venom.

Homo sapiens (taxid: 9606)

>sp|Q28146|NRX1A_BOVIN Neurexin-1 OS=Bos taurus GN=NRXN1 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query: 17  SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
           +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ +G G
Sbjct: 344 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQTSGIG 399

Cell surface protein involved in cell-cell-interactions, excytosis of secretory granules and regulation of signal transmission. Function is isoform-specific. Alpha-type isoforms have a long N-terminus with six laminin G-like domains and play an important role in synaptic signal transmission. Alpha-type isoforms play a role in the regulation of calcium channel activity and Ca(2+)-triggered neurotransmitter release at synapses and at neuromuscular junctions. They play an important role in Ca(2+)-triggered exocytosis of secretory granules in pituitary gland. They may effect their functions at synapses and in endocrine cells via their interactions with proteins from the exocytotic machinery. Likewise, alpha-type isoforms play a role in regulating the activity of postsynaptic NMDA receptors, a subtype of glutamate-gated ion channels (By similarity). Both alpha-type and beta-type isoforms may play a role in the formation or maintenance of synaptic junctions via their interactions (via the extracellular domains) with neuroligin family members, CBLN1 or CBLN2. In vitro, triggers the de novo formation of presynaptic structures. May be involved in specification of excitatory synapses. Alpha-type isoforms were first identified as receptors for alpha-latroxin from spider venom.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
270010294	718	hypothetical protein TcasGA2_TC009676 [T	0.420	0.073	0.622	3e-14
312377883	448	hypothetical protein AND_10684 [Anophele	0.396	0.111	0.576	7e-14
328710867	210	PREDICTED: neurexin-1-alpha-like, partia	0.436	0.261	0.543	7e-14
442620475	1525	neurexin 1, isoform G [Drosophila melano	0.412	0.034	0.576	2e-13
307191569	213	Neurexin-3-alpha [Harpegnathos saltator]	0.420	0.248	0.547	2e-13
170055731	1554	neurexin [Culex quinquefasciatus] gi|167	0.396	0.032	0.576	2e-13
321469628	1345	hypothetical protein DAPPUDRAFT_20079 [D	0.444	0.041	0.571	3e-13
442620471	1825	neurexin 1, isoform E [Drosophila melano	0.412	0.028	0.576	4e-13
195502605	1835	GE10306 [Drosophila yakuba] gi|194184398	0.412	0.028	0.576	4e-13
195331037	1837	GM26438 [Drosophila sechellia] gi|194121	0.412	0.028	0.576	4e-13

>gi|270010294|gb|EFA06742.1| hypothetical protein TcasGA2_TC009676 [Tribolium castaneum]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 46/53 (86%)

Query: 15  DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
           DG+DYLNVAIK+G +++ + L+ GK +M I+PN++RFDDNQWH +S+HRRIQE
Sbjct: 371 DGTDYLNVAIKEGCLSLTMGLSNGKQEMQIKPNKVRFDDNQWHKVSVHRRIQE 423

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377883|gb|EFR24607.1| hypothetical protein AND_10684 [Anopheles darlingi]

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 47/52 (90%)

Query: 16 GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
          G+DYLN+A++DGGV++ + L+ GK +M+I+P+R+RFDD+QWH +++HRRIQE
Sbjct: 5  GTDYLNLALRDGGVSLTMGLSNGKQEMHIKPSRVRFDDHQWHKVTVHRRIQE 56

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710867|ref|XP_003244386.1| PREDICTED: neurexin-1-alpha-like, partial [Acyrthosiphon pisum]

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 45/57 (78%), Gaps = 2/57 (3%)

Query: 10 LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQ 66
          +GDGS  S+YLNV I  GG+ + +++  G LDM+I+PNR+RFDDNQWH +S+ R++Q
Sbjct: 41 MGDGS--SNYLNVGIVTGGITVTMRVGTGSLDMFIKPNRIRFDDNQWHKISVTRKVQ 95

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442620475|ref|NP_001262841.1| neurexin 1, isoform G [Drosophila melanogaster] gi|440217754|gb|AGB96221.1| neurexin 1, isoform G [Drosophila melanogaster]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 47/52 (90%)

Query: 16  GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
           G+DYLN+A++DGGV++ + LA GK +M+I+P+++RFDD+QWH +++HRRIQE
Sbjct: 401 GTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQWHKVTVHRRIQE 452

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191569|gb|EFN75067.1| Neurexin-3-alpha [Harpegnathos saltator]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 45/53 (84%)

Query: 15  DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
           +G DYL V+++DGG A+ + LA G+LD++I+P ++RFDDNQWH +S+HR++QE
Sbjct: 101 EGDDYLTVSLRDGGAAVGMTLAKGRLDLHIKPTKVRFDDNQWHKISVHRKVQE 153

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055731|ref|XP_001863712.1| neurexin [Culex quinquefasciatus] gi|167875587|gb|EDS38970.1| neurexin [Culex quinquefasciatus]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 46/52 (88%)

Query: 16  GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
           G+DYLN+A++DGGV++ + L+ GK +M+I+P R+RFDD+QWH +++HRRIQE
Sbjct: 82  GTDYLNLALRDGGVSLTMGLSNGKQEMHIKPARVRFDDHQWHKVTVHRRIQE 133

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469628|gb|EFX80607.1| hypothetical protein DAPPUDRAFT_20079 [Daphnia pulex]

 Score = 79.7 bits (195), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 15  DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTG 70
           DG DYL + ++DG V +N+ L  GKLD+ IRP R+RFDDNQWH ++IHR+ QE +G
Sbjct: 301 DGEDYLALTLRDGAVTLNINLGSGKLDVQIRPPRVRFDDNQWHRVNIHRKAQEISG 356

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442620471|ref|NP_001262839.1| neurexin 1, isoform E [Drosophila melanogaster] gi|440217752|gb|AGB96219.1| neurexin 1, isoform E [Drosophila melanogaster]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 47/52 (90%)

Query: 16  GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
           G+DYLN+A++DGGV++ + LA GK +M+I+P+++RFDD+QWH +++HRRIQE
Sbjct: 401 GTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQWHKVTVHRRIQE 452

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195502605|ref|XP_002098297.1| GE10306 [Drosophila yakuba] gi|194184398|gb|EDW98009.1| GE10306 [Drosophila yakuba]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 47/52 (90%)

Query: 16  GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
           G+DYLN+A++DGGV++ + LA GK +M+I+P+++RFDD+QWH +++HRRIQE
Sbjct: 401 GTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQWHKVTVHRRIQE 452

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195331037|ref|XP_002032209.1| GM26438 [Drosophila sechellia] gi|194121152|gb|EDW43195.1| GM26438 [Drosophila sechellia]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 47/52 (90%)

Query: 16  GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
           G+DYLN+A++DGGV++ + LA GK +M+I+P+++RFDD+QWH +++HRRIQE
Sbjct: 401 GTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQWHKVTVHRRIQE 452

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
FB|FBgn0038975	1840	Nrx-1 "Neurexin 1" [Drosophila	0.412	0.028	0.576	3.3e-13
UNIPROTKB|H0YJL2	175	NRXN3 "Neurexin-3-beta, C-term	0.563	0.405	0.315	1.6e-08
UNIPROTKB|F1SQJ0	163	LOC100519087 "Uncharacterized	0.444	0.343	0.321	2.9e-07
ZFIN|ZDB-GENE-070206-10	1687	nrxn3b "neurexin 3b" [Danio re	0.563	0.042	0.315	5.6e-07
ZFIN|ZDB-GENE-070206-9	1697	nrxn3a "neurexin 3a" [Danio re	0.563	0.041	0.315	5.6e-07
UNIPROTKB|D0PRN3	1693	D0PRN3 "Neurexin-3" [Gallus ga	0.563	0.041	0.315	7.2e-07
UNIPROTKB|F1NLI2	861	F1NLI2 "Uncharacterized protei	0.539	0.078	0.315	2.3e-06
UNIPROTKB|D4ABV7	1520	D4ABV7 "Uncharacterized protei	0.444	0.036	0.321	3e-06
UNIPROTKB|Q63372	1530	Nrxn1 "Neurexin-1" [Rattus nor	0.444	0.036	0.321	3e-06
UNIPROTKB|E1C8Q7	1540	E1C8Q7 "Uncharacterized protei	0.539	0.044	0.315	4.6e-06

FB|FBgn0038975 Nrx-1 "Neurexin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 30/52 (57%), Positives = 47/52 (90%)

Query:    16 GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE 67
             G+DYLN+A++DGGV++ + LA GK +M+I+P+++RFDD+QWH +++HRRIQE
Sbjct:   401 GTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQWHKVTVHRRIQE 452

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0007268 "synaptic transmission" evidence=IDA

GO:0050808 "synapse organization" evidence=IDA

GO:0008306 "associative learning" evidence=IDA

GO:0007416 "synapse assembly" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

UNIPROTKB|H0YJL2 NRXN3 "Neurexin-3-beta, C-terminal fragment" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:     2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
             +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct:    48 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 107

Query:    57 HHLSIHRRIQEGTGCG 72
             H + + R +++ +G G
Sbjct:   108 HDVKVTRNLRQHSGIG 123

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

UNIPROTKB|F1SQJ0 LOC100519087 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query:    17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
             +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ +G G
Sbjct:    51 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 106

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

ZFIN|ZDB-GENE-070206-10 nrxn3b "neurexin 3b" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:     2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
             +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct:   279 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 338

Query:    57 HHLSIHRRIQEGTGCG 72
             H + + R +++ +G G
Sbjct:   339 HDIKVTRNLRQHSGIG 354

GO:0004872 "receptor activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070206-9 nrxn3a "neurexin 3a" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:     2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
             +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct:   283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNSW 342

Query:    57 HHLSIHRRIQEGTGCG 72
             H + + R +++ +G G
Sbjct:   343 HDVKVTRNLRQHSGIG 358

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|D0PRN3 D0PRN3 "Neurexin-3" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:     2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
             +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct:   287 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 346

Query:    57 HHLSIHRRIQEGTGCG 72
             H + + R +++ +G G
Sbjct:   347 HDVKVTRNLRQHSGIG 362

GO:0007416 "synapse assembly" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NLI2 F1NLI2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 23/73 (31%), Positives = 41/73 (56%)

Query:     2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
             +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct:    38 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 97

Query:    57 HHLSIHRRIQEGT 69
             H + + R +++ T
Sbjct:    98 HDVKVTRNLRQVT 110

GO:0004872 "receptor activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

UNIPROTKB|D4ABV7 D4ABV7 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 117 (46.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query:    17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
             +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ +G G
Sbjct:   338 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 393

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

UNIPROTKB|Q63372 Nrxn1 "Neurexin-1" [Rattus norvegicus (taxid:10116)]

 Score = 117 (46.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query:    17 SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG 72
             +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ +G G
Sbjct:   344 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIG 399

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007612 "learning" evidence=ISS

GO:0009986 "cell surface" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030534 "adult behavior" evidence=ISS

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050839 "cell adhesion molecule binding" evidence=ISS

GO:0050885 "neuromuscular process controlling balance" evidence=ISS

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0051968 "positive regulation of synaptic transmission, glutamatergic" evidence=ISS

GO:0060134 "prepulse inhibition" evidence=ISS

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

GO:0097104 "postsynaptic membrane assembly" evidence=ISS

GO:0097109 "neuroligin family protein binding" evidence=ISS

GO:0097116 "gephyrin clustering" evidence=ISS

GO:0097118 "neuroligin clustering" evidence=ISS

GO:0097119 "postsynaptic density protein 95 clustering" evidence=ISS

GO:2000463 "positive regulation of excitatory postsynaptic membrane potential" evidence=ISS

GO:2000821 "regulation of grooming behavior" evidence=ISS

UNIPROTKB|E1C8Q7 E1C8Q7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 23/73 (31%), Positives = 41/73 (56%)

Query:     2 LTLSTDCWLGDG-----SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQW 56
             +TLS   W  +G        +DY+N+A+KDG V++ + L  G  +  + P   +F+DN W
Sbjct:   283 ITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNAW 342

Query:    57 HHLSIHRRIQEGT 69
             H + + R +++ T
Sbjct:   343 HDVKVTRNLRQVT 355

GO:0004872 "receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	126
pfam02210	124	pfam02210, Laminin_G_2, Laminin G domain	2e-06
smart00282	132	smart00282, LamG, Laminin G domain	5e-06
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	3e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	5e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.001
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.004

>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 12 DGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRR 64
           G DG D+L + ++DG + +   L  G     +  +  + +D QWH +S+ R 
Sbjct: 14 GGEDGLDFLALELEDGRLVLRYDL--GSGGSVLLLSGKKLNDGQWHRVSVSRD 64

This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. Length = 124

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 12 DGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
              G DYL + ++DG +   L+  +G     +  +    +D QWH +++ R
Sbjct: 19 GSKGGGDYLALELRDGRL--VLRYDLGSGPARLTSDPTPLNDGQWHRVAVER 68

Length = 132

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 12 DGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
             +G D+L + ++DG + +   L  G L   +       +D QWH +S+ R
Sbjct: 41 GSQNGGDFLALELEDGRLVLRYDLGSGSL--VLSSKT-PLNDGQWHSVSVER 89

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 34/52 (65%)

Query: 73  KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGGRG 124
           K+ E++K+ + K      +K EEEE E++K+E++++ EEEE +EE+ E    
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 17/48 (35%), Positives = 33/48 (68%)

Query: 73  KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
             E+ +K+RE++ +E++ +    ++ EE++EE+KEK EEE+ +EE   
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 67  EGTGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEE 104
            G   G + E+++  E++ EEEE+E+ EEEE EE+ EE
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 15/52 (28%), Positives = 33/52 (63%)

Query: 74  EEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGGRGG 125
           ++  + + E    EE + K +EE++++++ EKK+K + +E KE+R++  R  
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434

Length = 434

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 83  DKVEEEEDEKLEEEEMEEQKEEKKEKVEEEE 113
           D  EEEE+E+ EEEE EE++EE++E+ E EE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 87  EEEDEKLEEEEMEEQKEEKKEKVEEEEVKEE 117
           + E+E+ EEEE EE++EE++E+ EEEE  EE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 20/50 (40%), Positives = 38/50 (76%)

Query: 73  KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGG 122
           +++EKKK+     ++EE+E+ E+E+ EE+KEE++E+ EEE+ +EE ++  
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 21/54 (38%), Positives = 35/54 (64%)

Query: 73  KEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGGRGGR 126
           K EE+KK ++ K    + ++ EEEE +E+KEE+KE+ EEE  +E+  E  +  +
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 65  IQEGTGCGKEEEKKKRRE---DKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKE 116
             E  G  K++EK        D  + EE+E+ EEEE EE++EE++E+ EEEE +E
Sbjct: 838 NAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 15/83 (18%)

Query: 53  DNQWHHLSIHRRIQEGTGC-GKEEEKKKRREDKVEEEEDEK--------------LEEEE 97
             +  H        + T    +  E++   E++ E ++DEK               EEEE
Sbjct: 810 GEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEE 869

Query: 98  MEEQKEEKKEKVEEEEVKEERRE 120
            EE++EE++E+ EEEE +EE  E
Sbjct: 870 EEEEEEEEEEEEEEEEEEEENEE 892

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 76  EKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
            +  R+ DK  EEE+EK+ +   EE++EE +EK EE++ +E   +
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAK 299

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 17/52 (32%), Positives = 33/52 (63%)

Query: 69  TGCGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERRE 120
           TG  K  +K K+  +K E++ +E+ +E++ +    +KKE+ EEEE +++  E
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Length = 482

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 79  KRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERREGGRGGR 126
           K+RE+ VE+ + E   E++  E++E +KEK +E E +E  RE  R  +
Sbjct: 579 KKREEAVEKAKREA--EQKAREEREREKEKEKERE-REREREAERAAK 623

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PF00054	131	Laminin_G_1: Laminin G domain; InterPro: IPR012679	99.62
smart00282	135	LamG Laminin G domain.	99.54
KOG3514|consensus	1591		99.45
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	99.43
PF02210	128	Laminin_G_2: Laminin G domain; InterPro: IPR012680	99.37
KOG3516|consensus	1306		99.31
KOG3516|consensus	1306		99.21
KOG3514|consensus	1591		99.19
KOG4289|consensus	2531		98.86
KOG1219|consensus	4289		98.29
smart00210	184	TSPN Thrombospondin N-terminal -like domains. Hepa	98.09
PF13385	157	Laminin_G_3: Concanavalin A-like lectin/glucanases	96.35
KOG4289|consensus	2531		94.27
smart00159	206	PTX Pentraxin / C-reactive protein / pentaxin fami	93.54
cd00152	201	PTX Pentraxins are plasma proteins characterized b	92.11
KOG1834|consensus	952		92.06
PF02973	190	Sialidase: Sialidase, N-terminal domain; InterPro:	89.17
smart00560	133	LamGL LamG-like jellyroll fold domain.	88.95
PF14099	224	Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A	85.61
PF00354	195	Pentaxin: Pentaxin family; InterPro: IPR001759 Pen	81.73

>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.62  E-value=2.6e-15  Score=108.33  Aligned_cols=70  Identities=21%  Similarity=0.414  Sum_probs=60.4

Q ss_pred             eeeceeeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEeccccc
Q psy6121           5 STDCWLGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEK   77 (126)
Q Consensus         5 sfrtlLLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~   77 (126)
                      ..+++|||.|.  ..|||+|+|.+|+|.+.|++|+++..+..   ...++||+||+|.+.|+.+.++|.||+...
T Consensus         5 ~~~Gllly~g~~~~~dfial~L~~G~l~~~~~~G~~~~~~~~---~~~i~dg~wh~v~~~r~~~~~~L~Vd~~~~   76 (131)
T PF00054_consen    5 EPNGLLLYLGSKDGKDFIALELRDGRLEFRYNLGSGPASLRS---PQKINDGKWHTVSVSRNGRNGSLSVDGEEV   76 (131)
T ss_dssp             SSSEEEEEEESSTTSSEEEEEEETTEEEEEEESSSEEEEEEE---SSETTSSSEEEEEEEEETTEEEEEETTSEE
T ss_pred             CCCceEEECCcCCCCCEEEEEEECCEEEEEEeCCCccceecC---CCccCCCcceEEEEEEcCcEEEEEECCccc
Confidence            34567999876  55999999999999999999999876543   245999999999999999999999999876

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....

>smart00282 LamG Laminin G domain

Probab=99.54  E-value=8.4e-14  Score=98.90  Aligned_cols=75  Identities=23%  Similarity=0.390  Sum_probs=64.3

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.++  ..+|++|+|.+|++.+.++.|+++..+..  +..+++||+||+|.+.++.+.++|.||+
T Consensus         5 i~~~frt~~~~g~l~~~~~~~~~~~l~l~l~~g~l~~~~~~g~~~~~~~~--~~~~~~dg~WH~v~i~~~~~~~~l~VD~   82 (135)
T smart00282        5 ISFSFRTTSPNGLLLYAGSKNGGDYLALELRDGRLVLRYDLGSGPARLTS--DPTPLNDGQWHRVAVERNGRRVTLSVDG   82 (135)
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCCCEEEEE--CCeEeCCCCEEEEEEEEeCCEEEEEECC
Confidence            67888875     888866  77999999999999999999988765543  2378999999999999999999999998


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus        83 ~~~~   86 (135)
T smart00282       83 ENPV   86 (135)
T ss_pred             Cccc
Confidence            6544

>KOG3514|consensus

Probab=99.45  E-value=3.1e-13  Score=125.97  Aligned_cols=75  Identities=35%  Similarity=0.533  Sum_probs=71.6

Q ss_pred             eEEeeece-----eeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccc
Q psy6121           2 LTLSTDCW-----LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEE   76 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~   76 (126)
                      |||+|+|+     |||+|+..||+.|.|++|-+.+.+++++|.++..+.|+..++||++||.|.++|+...++|+||+.-
T Consensus       277 itl~FrT~q~ngllfytG~~~dYlnlaL~dGaV~l~~~l~~g~~e~~~~p~~~rfdD~~WH~V~v~R~~~m~t~~VDg~~  356 (1591)
T KOG3514|consen  277 ITLTFRTVQGNGLLFYTGDEKDYLNLALQDGAVSLSSKLDGGDAEIIRMPNSFRFDDDSWHTVIVERSLQMMTLIVDGRR  356 (1591)
T ss_pred             eEEEEEEecCceeEEEccCCcceeeEeecCCcEEEEEecCCccceeEEccccccccCCcceEEEEEeeeEEEEEEEccEE
Confidence            89999986     9999999999999999999999999999999999989889999999999999999999999999854

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=99.43  E-value=1.6e-12  Score=92.48  Aligned_cols=71  Identities=24%  Similarity=0.396  Sum_probs=60.1

Q ss_pred             eEEeeece-----eeecCCC--CCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSDG--SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~~--~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.+..  .+|++|+|.+|++.+.++.|+.+..+.  . ..+++||+||+|.+.++...++|.||+
T Consensus        24 i~~~frt~~~~g~l~~~~~~~~~~~~~l~l~~g~l~~~~~~g~~~~~~~--~-~~~v~dg~Wh~v~i~~~~~~~~l~VD~  100 (151)
T cd00110          24 ISFSFRTTSPNGLLLYAGSQNGGDFLALELEDGRLVLRYDLGSGSLVLS--S-KTPLNDGQWHSVSVERNGRSVTLSVDG  100 (151)
T ss_pred             EEEEEEeCCCCeEEEEecCCCCCCEEEEEEECCEEEEEEcCCcccEEEE--c-cCccCCCCEEEEEEEECCCEEEEEECC
Confidence            67888764     8888765  899999999999999999996554332  2 237999999999999999999999999


Q ss_pred             c
Q psy6121          75 E   75 (126)
Q Consensus        75 ~   75 (126)
                      .
T Consensus       101 ~  101 (151)
T cd00110         101 E  101 (151)
T ss_pred             c
Confidence            8

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.37  E-value=6.1e-12  Score=86.53  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=61.6

Q ss_pred             eceeeecCCCC--CeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhcccc
Q psy6121           7 DCWLGDGSDGS--DYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRREDK   84 (126)
Q Consensus         7 rtlLLyaG~~~--DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~~~~   84 (126)
                      +++|||.++..  +|+.|+|.+|+|.+.+++|+.......  +..+++|++||+|.+.|....++|.||+..........
T Consensus         7 ~g~Ll~~~~~~~~~~l~l~l~~g~l~~~~~~g~~~~~~~~--~~~~~~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~   84 (128)
T PF02210_consen    7 NGLLLYIGSEDNGDFLSLELVDGRLVVRYNLGGSEIVTTF--SNSNLNDGQWHKVSISRDGNRVTLTVDGQSVSSESLPS   84 (128)
T ss_dssp             SEEEEEEEESTTSEEEEEEEETTEEEEEEESSSSEEEEEE--CSSSSTSSSEEEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred             CEeEEEEcCCCCCEEEEEEEECCEEEEEEEccccceeeec--cCccccccceeEEEEEEeeeeEEEEecCccceEEeccc
Confidence            45688886533  699999999999999999954443332  34689999999999999999999999999887765543

The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....

>KOG3516|consensus

Probab=99.31  E-value=8.1e-12  Score=117.21  Aligned_cols=80  Identities=16%  Similarity=0.281  Sum_probs=72.0

Q ss_pred             eEEeeece-----eeecCCCCCeEEEEEeCCE-EEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEeccc
Q psy6121           2 LTLSTDCW-----LGDGSDGSDYLNVAIKDGG-VAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEE   75 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~~~DFIaLeL~~G~-L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~   75 (126)
                      |+|.|||.     +|.+-+..|||.|+|..+. ++|.++.|+||..+++..+ ..+||++||.|.++||.++.+|+||+.
T Consensus       813 Isf~FrTt~~~gvflen~g~~dfir~eL~~~~~vtf~~dvgnGp~~~~V~s~-t~~nD~qWH~V~~Ern~K~a~LqVD~~  891 (1306)
T KOG3516|consen  813 ISFFFRTTASSGVFLENHGINDFIRLELSSPVEVTFAFDVGNGPSQLTVRSP-TELNDNQWHQVRAERNSKEASLQVDGL  891 (1306)
T ss_pred             EEEEEEecCCceEeeeccCCCceEEEEEcCCCceEEEEEcCCCceeEEEcCC-cccCCCceEEEEEEeccccceEEEcCc
Confidence            78999985     5555558899999999986 9999999999999988654 789999999999999999999999999


Q ss_pred             ccchhcc
Q psy6121          76 EKKKRRE   82 (126)
Q Consensus        76 ~~~~~~~   82 (126)
                      .+..|++
T Consensus       892 ~~~~r~s  898 (1306)
T KOG3516|consen  892 PKSIRTS  898 (1306)
T ss_pred             ccceecC
Confidence            9998876

>KOG3516|consensus

Probab=99.21  E-value=4.9e-11  Score=112.05  Aligned_cols=77  Identities=21%  Similarity=0.310  Sum_probs=64.0

Q ss_pred             CeEEeeece-----eeec-CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEc----CCCcccCCCCceEEEEEEeceeEEE
Q psy6121           1 MLTLSTDCW-----LGDG-SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIR----PNRLRFDDNQWHHLSIHRRIQEGTG   70 (126)
Q Consensus         1 ~IS~sfrtl-----LLya-G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~----~s~~~lnDgqWH~V~v~R~~r~~sL   70 (126)
                      +|+|.|||.     |||+ |.++|||.|+|++|++.|.+|+|+.+...+..    +..+.|+|++||.|.+.|.++.+.+
T Consensus       203 ~is~~Fkt~~sdGvllh~eg~QGd~itlql~~~kl~l~ld~G~~~~~~s~~~~sis~GslLdD~hWHsV~i~r~~~~vnf  282 (1306)
T KOG3516|consen  203 VISLKFKTMQSDGVLLHGEGQQGDYITLQLIGGKLVLILDLGNSKLPSSRTPTSISAGSLLDDQHWHSVRIERQGRQVNF  282 (1306)
T ss_pred             eeEEEEEeeccceeEEEcccCCCCEEEEEEeCCEEEEEEecCCccCccccCcceeecccccCCCcceEEEEEecCcEEEE
Confidence            589999975     8887 77999999999999999999999654322221    2256799999999999999999999


Q ss_pred             Eeccccc
Q psy6121          71 CGKEEEK   77 (126)
Q Consensus        71 ~vd~~~~   77 (126)
                      +||+-.-
T Consensus       283 tvD~~~~  289 (1306)
T KOG3516|consen  283 TVDGVVH  289 (1306)
T ss_pred             EEccceE
Confidence            9998654

>KOG3514|consensus

Probab=99.19  E-value=6.2e-11  Score=110.92  Aligned_cols=72  Identities=18%  Similarity=0.378  Sum_probs=61.8

Q ss_pred             eEEeeece-----eeec-CC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEe
Q psy6121           2 LTLSTDCW-----LGDG-SD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG   72 (126)
Q Consensus         2 IS~sfrtl-----LLya-G~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~v   72 (126)
                      |||.|||.     |+|+ |.   ..|||+++|.||+|.+.+++|+|.+.+..  +...+|||.||+|.+.|++|.++++|
T Consensus       463 iSf~FRTtepnGlil~~~g~~~~~~d~~A~ELldghlyl~ldlGSG~iklra--s~rkv~DGeWhhv~l~R~gR~gsvsV  540 (1591)
T KOG3514|consen  463 ISFDFRTTEPNGLILFHGGPQANATDYFAIELLDGHLYLLLDLGSGVIKLRA--SSRKVNDGEWHHVDLQRDGRTGSVSV  540 (1591)
T ss_pred             eEEEEeecCCCceEEEccCcccccccEEEEEEeCCeEEEEEecCCceEEeee--ecccccCCceEEEEeeccCccceEEE
Confidence            78999974     4444 44   56999999999999999999999876654  34689999999999999999999999


Q ss_pred             ccc
Q psy6121          73 KEE   75 (126)
Q Consensus        73 d~~   75 (126)
                      |+.
T Consensus       541 d~~  543 (1591)
T KOG3514|consen  541 DAI  543 (1591)
T ss_pred             eee
Confidence            975

>KOG4289|consensus

Probab=98.86  E-value=1e-08  Score=98.63  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             eEEeeec-----eeeecCC-CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCC-CcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDC-----WLGDGSD-GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPN-RLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrt-----lLLyaG~-~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s-~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      ++|+|.|     +|||.|+ ..||++|++.++.+++.|.+|.....  +.|. ...++||+||+|.+...++.++++||+
T Consensus      1341 lslsfaT~~~nGlL~ynGnekhDFvalevVd~qvqltfS~Ges~t~--v~p~Vp~gvsDGqWHtV~l~YyNK~av~svDd 1418 (2531)
T KOG4289|consen 1341 LSLSFATIERNGLLLYNGNEKHDFVALEVVDEQVQLTFSAGESTTT--VSPDVPGGVSDGQWHTVQLEYYNKVAVVSVDD 1418 (2531)
T ss_pred             EEEEEEEeeecceEEecCCcccceEeeeeeeeeEEEEEecccccce--ecCCCCCCcccCceeEEEEEEeceEEEEEecc
Confidence            5677765     4999997 56999999999999999999964432  2222 357999999999999999999999997


Q ss_pred             cc
Q psy6121          75 EE   76 (126)
Q Consensus        75 ~~   76 (126)
                      -.
T Consensus      1419 Cd 1420 (2531)
T KOG4289|consen 1419 CD 1420 (2531)
T ss_pred             cc
Confidence            54

>KOG1219|consensus

Probab=98.29  E-value=1.9e-06  Score=86.18  Aligned_cols=71  Identities=13%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             ceeeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121           8 CWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR   81 (126)
Q Consensus         8 tlLLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~   81 (126)
                      |.++|+- ..||..|.|.+|.+.+.++.|+|+-.  +......+|||+||.|.+.|+++.++|.||++...+..
T Consensus      3720 gIiM~tr-~~d~~iLkLv~G~~~l~~~cgsG~Gi--vg~q~~~VnDgqWHsialerrr~~irlsvDd~~~~~at 3790 (4289)
T KOG1219|consen 3720 GIIMYTR-KTDLAILKLVGGSPQLLADCGSGPGI--VGSQKRTVNDGQWHSIALERRRNHIRLSVDDDTYDSAT 3790 (4289)
T ss_pred             cEEEEEc-CCceEEEEecCCcEEEEEecCCCCCc--ccccceEeecCceeEEEeeccCCceEEEEcccCceeee
Confidence            3477754 78999999999999999999999832  22223579999999999999999999999998766543

>smart00210 TSPN Thrombospondin N-terminal -like domains

Probab=98.09  E-value=3.5e-05  Score=58.76  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=50.7

Q ss_pred             eeecC--CCCCeEEEEEeCCEEEEEEEc--CCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121          10 LGDGS--DGSDYLNVAIKDGGVAINLKL--AMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR   81 (126)
Q Consensus        10 LLyaG--~~~DFIaLeL~~G~L~l~~nl--GsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~   81 (126)
                      ||...  ++..++.|.|..+...+.|..  ..|.......+ ..++.||+||+|.+...+..++|-||......+.
T Consensus        70 L~si~~~~~~~~l~v~l~g~~~~~~~~~~~~~g~~~~~~f~-~~~l~dg~WH~lal~V~~~~v~LyvDC~~~~~~~  144 (184)
T smart00210       70 LFAIYDAQNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFR-NLPLADGQWHKLALSVSGSSATLYVDCNEIDSRP  144 (184)
T ss_pred             EEEEEcCCCcEEEEEEEeCCccEEEEEECCCCCcEEEEeec-CCccccCCceEEEEEEeCCEEEEEECCcccccee
Confidence            55543  355689999987765555553  33443332222 3679999999999999999999999998776653

Heparin-binding and cell adhesion domain of thrombospondin

>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A

Probab=96.35  E-value=0.041  Score=37.79  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=40.2

Q ss_pred             CCeEEEEEeC-CEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121          17 SDYLNVAIKD-GGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR   81 (126)
Q Consensus        17 ~DFIaLeL~~-G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~   81 (126)
                      .+.+.|.+.+ |.+.+.+..+++.....  .+...+.++.||+|.+..+...++|-||+.......
T Consensus        49 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~  112 (157)
T PF13385_consen   49 SGGFGLFINNNGRLRFYIGNGGGGNYSF--SSDSNLPDNKWHHLALTYDGSTVTLYVNGELVGSST  112 (157)
T ss_dssp             SEEEEEEEETTSEEEEEETTSEEESS-E--E-BS---TT-EEEEEEEEETTEEEEEETTEEETTCT
T ss_pred             CCEEEEEEECCCEEEEEEeCCCceeEEE--ecCcccCCCCEEEEEEEEECCeEEEEECCEEEEeEe
Confidence            3467777764 66666666554221111  124678999999999999999999999998766543

...

>KOG4289|consensus

Probab=94.27  E-value=0.13  Score=51.58  Aligned_cols=58  Identities=28%  Similarity=0.475  Sum_probs=41.7

Q ss_pred             eEEeeece-----eeec-CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEec
Q psy6121           2 LTLSTDCW-----LGDG-SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRI   65 (126)
Q Consensus         2 IS~sfrtl-----LLya-G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~   65 (126)
                      ++|-|+|.     ||.+ ..+..-+.++|.+|.|.+.+.-  ..+.+   + ...++||+||.+.|.-..
T Consensus      1566 lsl~FRTr~ad~vl~~~~~~~rst~~lqld~g~l~~~v~~--s~v~L---~-~~~vtdg~Wh~~~i~l~~ 1629 (2531)
T KOG4289|consen 1566 LSLMFRTRRADGVLMQAEFGGRSTYNLQLDDGTLKYNVGD--SSVEL---P-APRVTDGHWHHLVIELEA 1629 (2531)
T ss_pred             EEEEEEeeccccEEEEEEeCCCceEEEEEcCCEEEEEecC--ceEEc---c-CccccCCchhheeeeecc
Confidence            67888886     6665 2234459999999999887753  23222   3 368999999999987753

>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family

Probab=93.54  E-value=0.6  Score=36.11  Aligned_cols=29  Identities=14%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             cccCCCCceEEEEEEecee--EEEEeccccc
Q psy6121          49 LRFDDNQWHHLSIHRRIQE--GTGCGKEEEK   77 (126)
Q Consensus        49 ~~lnDgqWH~V~v~R~~r~--~sL~vd~~~~   77 (126)
                      ..+.|++||+|.++.+...  .+|-||+...
T Consensus        85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~  115 (206)
T smart00159       85 VPESDGKWHHICTTWESSSGIAELWVDGKPG  115 (206)
T ss_pred             ccccCCceEEEEEEEECCCCcEEEEECCEEc
Confidence            4689999999999998654  6788999875

This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.

>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity

Probab=92.11  E-value=1.2  Score=34.13  Aligned_cols=62  Identities=15%  Similarity=0.231  Sum_probs=37.7

Q ss_pred             ecCC-CCCeEEEEE-eCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEece--eEEEEecccccchh
Q psy6121          12 DGSD-GSDYLNVAI-KDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKKKR   80 (126)
Q Consensus        12 yaG~-~~DFIaLeL-~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~~~   80 (126)
                      |++. ..+.+.+.. ..|.+.+.++  +....  . +  .+.+|++||+|.++.+..  .++|-||+......
T Consensus        53 y~~~~~~~~~~l~~~~~g~~~~~i~--~~~~~--~-~--~~~~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~  118 (201)
T cd00152          53 YATKGQDNELLLYKEKDGGYSLYIG--GKEVT--F-K--VPESDGAWHHICVTWESTSGIAELWVNGKLSVRK  118 (201)
T ss_pred             EeCCCCCCeEEEEEcCCCeEEEEEc--CEEEE--E-e--ccCCCCCEEEEEEEEECCCCcEEEEECCEEeccc
Confidence            4433 333444433 3456666663  22221  1 1  345999999999999855  46899999876543

CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.

>KOG1834|consensus

Probab=92.06  E-value=0.73  Score=43.13  Aligned_cols=60  Identities=13%  Similarity=0.196  Sum_probs=45.8

Q ss_pred             CCCeEEEEEeCCEEEEEEEcCCceEEEE----EcCCCcccCCCCceEEEEEEeceeEEEEeccc
Q psy6121          16 GSDYLNVAIKDGGVAINLKLAMGKLDMY----IRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEE   75 (126)
Q Consensus        16 ~~DFIaLeL~~G~L~l~~nlGsG~~~~~----i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~   75 (126)
                      +..+.+|++.+=+|.|.+.-..|..+-.    .++....++|+.||+-.+.-+...++|.||+.
T Consensus       400 nrhHyslyvh~Crl~fllr~d~~~~~~fRpaef~Wkl~qVCD~EWH~Y~ln~efp~VtlyvDG~  463 (952)
T KOG1834|consen  400 NRHHYSLYVHGCRLEFLLRRDAGATSDFRPAEFHWKLPQVCDNEWHHYVLNVEFPDVTLYVDGK  463 (952)
T ss_pred             ccceeEEEEeccEEEEEEccCccccccccchheeccchhhhhhhhheeEEeecCceEEEEEcCc
Confidence            4468999999999999998644332111    01223469999999999999999999999985

>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3

Probab=89.17  E-value=2.6  Score=33.28  Aligned_cols=76  Identities=12%  Similarity=0.119  Sum_probs=51.0

Q ss_pred             eEEeeece-------eeecCC---CCCeEEEEEeCCEEEEEEEcCCc-eEEEEEcCC---CcccCCCCceEEEEEEe--c
Q psy6121           2 LTLSTDCW-------LGDGSD---GSDYLNVAIKDGGVAINLKLAMG-KLDMYIRPN---RLRFDDNQWHHLSIHRR--I   65 (126)
Q Consensus         2 IS~sfrtl-------LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG-~~~~~i~~s---~~~lnDgqWH~V~v~R~--~   65 (126)
                      |.++|+..       ||-.++   ...|+.|++.++.+-+-++-..+ .......|.   ....++..||+|.+.-+  .
T Consensus        37 I~i~Fk~~~~~~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~~~~~~~~~tva~~ad~~~  116 (190)
T PF02973_consen   37 IVIRFKSDSNSGIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGGYKNNVTFNTVAFVADSKN  116 (190)
T ss_dssp             EEEEEEESS-SSEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SEETTEES-EEEEEEEETTT
T ss_pred             EEEEEecCCCcceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEecccccCCceEEEEEEEEecCC
Confidence            56666651       555433   34799999999988888876554 222222221   23478889999999997  8


Q ss_pred             eeEEEEeccccc
Q psy6121          66 QEGTGCGKEEEK   77 (126)
Q Consensus        66 r~~sL~vd~~~~   77 (126)
                      ....|=|||..-
T Consensus       117 ~~ykly~NG~~v  128 (190)
T PF02973_consen  117 KGYKLYVNGELV  128 (190)
T ss_dssp             TEEEEEETTCEE
T ss_pred             CeEEEEeCCeeE
Confidence            889999999543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....

>smart00560 LamGL LamG-like jellyroll fold domain

Probab=88.95  E-value=6.3  Score=28.01  Aligned_cols=25  Identities=16%  Similarity=-0.027  Sum_probs=22.0

Q ss_pred             CCceEEEEEEec--eeEEEEecccccc
Q psy6121          54 NQWHHLSIHRRI--QEGTGCGKEEEKK   78 (126)
Q Consensus        54 gqWH~V~v~R~~--r~~sL~vd~~~~~   78 (126)
                      ++||+|.+..+.  ..++|-||+....
T Consensus        61 ~~W~hva~v~d~~~g~~~lYvnG~~~~   87 (133)
T smart00560       61 GVWVHLAGVYDGGAGKLSLYVNGVEVA   87 (133)
T ss_pred             CCEEEEEEEEECCCCeEEEEECCEEcc
Confidence            999999999998  7899999997543

>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A

Probab=85.61  E-value=4.1  Score=31.14  Aligned_cols=61  Identities=13%  Similarity=0.089  Sum_probs=38.7

Q ss_pred             CCeEEEEEeCCEEEEEEEcCC--ceEEEEEcCCCcccCCCCceEEEEEEece-----eEEEEeccccc
Q psy6121          17 SDYLNVAIKDGGVAINLKLAM--GKLDMYIRPNRLRFDDNQWHHLSIHRRIQ-----EGTGCGKEEEK   77 (126)
Q Consensus        17 ~DFIaLeL~~G~L~l~~nlGs--G~~~~~i~~s~~~lnDgqWH~V~v~R~~r-----~~sL~vd~~~~   77 (126)
                      ...++|.+.+|.+.+.+..+.  ............++.-|+||+|.+.-.-.     .+.+-+|+...
T Consensus       113 ~P~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v  180 (224)
T PF14099_consen  113 SPPFALRIKGGRLYLRVRGDEPSDSGNKAYSVDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLV  180 (224)
T ss_dssp             EECEEEEEETTEEEEEEEEE-TCEEEEEEEEEECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEEC
T ss_pred             CCcEEEEEeCCEEEEEEEcCCCCcccceeEeecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEE
Confidence            457999999999999998766  11111111223568889999999876433     46666677543

>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits

Probab=81.73  E-value=2.8  Score=32.45  Aligned_cols=27  Identities=19%  Similarity=0.219  Sum_probs=20.1

Q ss_pred             cccCCCCceEEEEEEece--eEEEEeccc
Q psy6121          49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEE   75 (126)
Q Consensus        49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~   75 (126)
                      ..+.|++||+|-++.+..  ...|-+|+.
T Consensus        79 ~~~~~~~Whh~C~tW~s~~G~~~ly~dG~  107 (195)
T PF00354_consen   79 GPIRDGQWHHICVTWDSSTGRWQLYVDGV  107 (195)
T ss_dssp             ECS-TSS-EEEEEEEETTTTEEEEEETTE
T ss_pred             cccCCCCcEEEEEEEecCCcEEEEEECCE
Confidence            468999999999999875  466668887

Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
2h0b_A	184	Crystal Structure Of The Second LnsLG DOMAIN FROM N		2e-06
3poy_A	1019	Crystal Structure Of The Alpha-Neurexin-1 Ectodomai		3e-06
3r05_A	1254	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		5e-06
3qcw_A	1245	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		5e-06

>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN 1 ALPHA Length = 184

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 16  GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
            +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ T
Sbjct: 51  SADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 104

>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 16  GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
            +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ T
Sbjct: 52  SADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 105

>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 17  SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
           +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ T
Sbjct: 278 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330

>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 17  SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
           +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ T
Sbjct: 278 ADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	7e-09
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	2e-08
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-07
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-06
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	7e-06
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-05
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-04
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	5e-08
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	1e-07
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	1e-07
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	4e-06
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	4e-06
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	2e-07
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	9e-05
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	2e-07
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	3e-07
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	5e-07
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	3e-07
3v64_A	191	Low-density lipoprotein receptor-related protein;	4e-07
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	5e-07
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	6e-07
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	3e-06
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	4e-06
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	5e-06
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	1e-05
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	2e-05
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 50.2 bits (120), Expect = 7e-09
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 14  SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
              +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ T
Sbjct: 49  GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 104

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 14  SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
              +DY+N+A+K+G V++ + L  G  +  + P   +F+DN WH + + R +++ T
Sbjct: 275 GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVT 330

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 9    WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
             +   S   DYL + I  G + +   +  G  D+ I  +    +D ++H +   R     
Sbjct: 1100 RVDSSSGLGDYLELHIHQGKIGVKFNV--GTDDIAIEESNAIINDGKYHVVRFTRSGGNA 1157

Query: 69   T 69
            T
Sbjct: 1158 T 1158

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 5   STDCWLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRR 64
                        D+  + + DG   + L L MG   + I+  + + +D +W+H+   R 
Sbjct: 468 HQKDAKHPQMIKVDFFAIEMLDG--HLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRD 525

Query: 65  IQEGT 69
            + GT
Sbjct: 526 GRSGT 530

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 42.9 bits (100), Expect = 7e-06
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 10  LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHR 63
           L +  DG+D++ V +  G +     L  G   +    N+   +DNQWH++ I R
Sbjct: 876 LYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK-PLNDNQWHNVMISR 928

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 12 DGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
          D     D+L + +  GG  + L  ++   +          +D  WH++ I R+ +  T
Sbjct: 41 DDEGFCDFLELILTRGGR-LQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTT 97

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
                 D +D L + +  G   + L + +GK    +       +DN+WH + + RR +  
Sbjct: 698 MATTSRDSADTLRLELDAG--RVKLTVNLGKGPETLFAGY-NLNDNEWHTVRVVRRGKSL 754

Query: 69  T 69
            
Sbjct: 755 K 755

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
               G   S ++ +A++ G + + L+           P     +   W  +S+    +  
Sbjct: 79  LFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP---VINHGMWQTISVEELARNL 135

Query: 69  T 69
            
Sbjct: 136 V 136

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 11  GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
           GD +   D+  + ++DG   I L     +L +   P   R DD +WH + +        
Sbjct: 58  GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEVKMEGDSVL 113

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKL-DMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
              G  Y  + +  G + ++L      +  + I+P   RF D + H + + R     T
Sbjct: 428 SGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFT 485

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
             D  D+++V + DG V ++  L  G   +         +D +W   ++ R  ++  
Sbjct: 247 TRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSN---QNHNDGKWKAFTLSRIQKQAN 300

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
            +   D+L + ++ G V+    +  G     +    L  DD+ W+ +   R  + G+
Sbjct: 53  SAKFIDFLAIEMRKGKVSFLWDV--GSGVGRVEYPDLTIDDSYWYRIEASRTGRNGS 107

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
            +   S   DYL + I  G + +   +  G  D+ I  +    +D ++H +   R     
Sbjct: 268 RVDSSSGLGDYLELHIHQGKIGVKFNV--GTDDIAIEESNAIINDGKYHVVRFTRSGGNA 325

Query: 69  T 69
           T
Sbjct: 326 T 326

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
             DG+D++ V +  G +     L  G   +    N+   +DNQWH++ I R      
Sbjct: 47  SGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK-PLNDNQWHNVMISRDTSNLH 102

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 11  GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
           GD +   D+  + ++DG   I L     +L +   P   R DD +WH + +        
Sbjct: 46  GDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVEVKMEGDSVL 101

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 12  DGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
              + +D+  V +++G    +  L  G     I     + +D QWH + I R  QEG 
Sbjct: 78  ARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPT---KINDGQWHKIKIVRVKQEGI 132

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
            S   D + + + D  +  ++    G+   +Y         + QWH ++  +      
Sbjct: 253 SSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLE 310

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
            +   S   DYL + I  G   I +K  +G  D+ I  +    +D ++H +   R     
Sbjct: 82  RVDSSSGLGDYLELHIHQG--KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNA 139

Query: 69  T 69
           T
Sbjct: 140 T 140

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
           W+G  ++ +DY+ +AI DG + ++  L    +   +R    + + N+W  +  HR  +EG
Sbjct: 54  WIGKAAERADYMALAIVDGHLQLSYDLGSQPV--VLRSTV-KVNTNRWLRIRAHREHREG 110

Query: 69  T 69
           +
Sbjct: 111 S 111

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
            +   S   DYL + I  G + +   +  G  D+ I  +    +D ++H +   R     
Sbjct: 48  RVDSSSGLGDYLELHIHQGKIGVKFNV--GTDDIAIEESNAIINDGKYHVVRFTRSGGNA 105

Query: 69  T 69
           T
Sbjct: 106 T 106

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKL-DMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
            S   D + + I DG V  ++    G++   Y         D +WH L  H+      
Sbjct: 241 SSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIV 298

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
             +  DY  + +++G +     L  G+  +          D +WH +      ++  
Sbjct: 65  HQNQMDYATLQLQEGRLHFMFDLGKGRTKVSHPA---LLSDGKWHTVKTEYIKRKAF 118

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
            +   S   DYL + I  G +   +K  +G  D+ I  +    +D ++H +   R     
Sbjct: 54  RVDSSSGLGDYLELHIHQGKIG--VKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNA 111

Query: 69  T 69
           T
Sbjct: 112 T 112

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
           W G G + SDY+ +AI DG   + +   +G   + +R      + N W H+  +R  +EG
Sbjct: 67  WSGKGLERSDYIALAIVDG--FVQMMYDLGSKPVVLRSTV-PINTNHWTHIKAYRVQREG 123

Query: 69  T 69
           +
Sbjct: 124 S 124

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 3   TLSTDC---WLGDGSDG-SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHH 58
                    + G  +DG  D++++A+ +  +     L  G     IR          W  
Sbjct: 44  ARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAA--IIRSKE-PIALGTWVR 100

Query: 59  LSIHRRIQEGT 69
           + + R  ++G 
Sbjct: 101 VFLERNGRKGA 111

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 13  GSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
             D +D L + +  G V + + L  G   ++        +DN+WH + + RR +   
Sbjct: 49  SRDSADTLRLELDAGRVKLTVNLGKGPETLFAGY---NLNDNEWHTVRVVRRGKSLK 102

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 11  GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT 69
           G+   G D++++ ++DG +    +L  G+  +    +    +D +WH ++  R  + G+
Sbjct: 55  GEAGQGKDFISLGLQDGHLVFRYQLGSGEARLV---SEDPINDGEWHRVTALREGRRGS 110

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 7/49 (14%), Positives = 20/49 (40%)

Query: 71  CGKEEEKKKRREDKVEEEEDEKLEEEEMEEQKEEKKEKVEEEEVKEERR 119
             + ++     E+K+ + + +  E+ +  +   EK   +E     E  +
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	99.72
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	99.68
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	99.67
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	99.67
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	99.66
3v64_A	191	Low-density lipoprotein receptor-related protein;	99.64
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.64
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	99.64
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	99.63
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.61
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	99.61
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	99.56
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.55
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.52
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.51
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.51
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	99.49
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	99.45
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.45
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	99.4
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.36
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	99.3
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.04
2erf_A	209	Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug	97.6
1za4_A	251	Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel	97.48
2uur_A	245	Collagen alpha-1(IX) chain; glycoprotein, hydroxyl	97.41
2v73_A	191	CBM40, putative EXO-alpha-sialidase; carbohydrate-	96.49
4b1m_A	185	Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil	94.41
3flp_A	217	SAP-like pentraxin; physiological doubly-stacked h	93.26
3kqr_A	204	Serum amyloid P-component; glycoprotein, disulfide	92.55
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	92.55
3pvn_A	206	C-reactive protein; pentraxin family, immune syste	90.6
4dqa_A	355	Uncharacterized protein; two domains structure, DU	88.69
2sli_A	679	Intramolecular trans-sialidase; hydrolase, neurami	87.95
2jkb_A	686	Sialidase B; intramolecular trans-sialidase, lyase	86.72
3zr5_A	656	Galactocerebrosidase; hydrolase, GALC, glycosyl hy	82.3
4azz_A	172	Levanase; hydrolase; 1.70A {Bacillus subtilis}	80.85

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=99.72  E-value=4.2e-17  Score=120.95  Aligned_cols=77  Identities=26%  Similarity=0.501  Sum_probs=67.2

Q ss_pred             eEEeeece-----eeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccc
Q psy6121           2 LTLSTDCW-----LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEE   76 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~   76 (126)
                      |+|.|+|.     |||.++..|||+|+|.+|+|.+.+++|+|+....+.++...+|||+||+|.+.|+.+.++|+||+..
T Consensus        32 isl~frT~~~~GlLl~~g~~~d~l~l~L~~G~l~~~~~~G~g~~~~~~~~~~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~  111 (184)
T 2h0b_A           32 ITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGIL  111 (184)
T ss_dssp             EEEEEEESCSCEEEEEECCTTEEEEEEEETTEEEEEEEESSCEEEEEECCSSSCSSSSSCEEEEEEEETTEEEEEETTTE
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCEEEEEEECCEEEEEEECCCCeEEEEEecCCcccCCCCeEEEEEEEeCCEEEEEEcCce
Confidence            68888875     9998888899999999999999999999986544445567899999999999999999999999876


Q ss_pred             cc
Q psy6121          77 KK   78 (126)
Q Consensus        77 ~~   78 (126)
                      ..
T Consensus       112 ~~  113 (184)
T 2h0b_A          112 TT  113 (184)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=99.68  E-value=4.1e-16  Score=116.05  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=64.6

Q ss_pred             eEEeeece-----eeec---CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDG---SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLya---G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||.   +...|||+|+|.+|+|.+.+++|+++..+.  ++...+|||+||+|.+.|+.+.++|+||
T Consensus        33 isl~FrT~~~~GlLl~~~~~~~~~dfi~l~L~~G~l~~~~~~G~~~~~~~--~~~~~vnDg~WH~V~v~r~~~~~~L~VD  110 (178)
T 3bod_A           33 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD  110 (178)
T ss_dssp             EEEEEECCCSSEEEEEEEESSSSCCEEEEEEETTEEEEEEESSSCCEEEE--CCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEECCCCEEEEEEcCCCCCCCEEEEEEECCEEEEEEECCCCceEEe--cCCcCccCCCeEEEEEEEeCCEEEEEEe
Confidence            68889875     8883   457899999999999999999999886543  4457899999999999999999999999


Q ss_pred             ccccc
Q psy6121          74 EEEKK   78 (126)
Q Consensus        74 ~~~~~   78 (126)
                      +....
T Consensus       111 ~~~~~  115 (178)
T 3bod_A          111 SWPVI  115 (178)
T ss_dssp             TSCCE
T ss_pred             CCcee
Confidence            97643

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=99.67  E-value=4.3e-16  Score=116.33  Aligned_cols=74  Identities=19%  Similarity=0.362  Sum_probs=64.4

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.+.  ..|||+|+|.+|+|.+.|++|+++..+.   +...+|||+||+|.+.|+.+.++|+||+
T Consensus        31 isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~G~~~~~~~---~~~~lnDg~WH~V~v~r~~~~~~L~VD~  107 (182)
T 2r16_A           31 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLF---AGYNLNDNEWHTVRVVRRGKSLKLTVDD  107 (182)
T ss_dssp             EEEEEECSCSSEEEEEEECSSSCCEEEEEEETTEEEEEEESSSCCEEEE---ECSSCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEECCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCCceEEE---cCcccCCCCeEEEEEEEECCEEEEEECC
Confidence            78889975     888864  6799999999999999999999886543   2468999999999999999999999999


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       108 ~~~~  111 (182)
T 2r16_A          108 QQAM  111 (182)
T ss_dssp             CCEE
T ss_pred             ceeE
Confidence            7653

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=99.67  E-value=4.2e-16  Score=117.84  Aligned_cols=74  Identities=24%  Similarity=0.299  Sum_probs=63.9

Q ss_pred             eEEeeece-----eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||.++   ..|||+|+|.+|+|.+.|++|+++..+.   +..++|||+||+|.+.|+.+.++|+||
T Consensus        52 is~~frT~~~~GlLl~~g~~~~~~dfl~l~L~~G~l~~~~~~G~g~~~v~---s~~~lnDg~WH~V~v~r~~~~~~L~VD  128 (204)
T 1pz7_A           52 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLR---STVPINTNHWTHIKAYRVQREGSLQVG  128 (204)
T ss_dssp             EEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEESSSCCEEEE---EEEECCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEcCCCCeEEEEeCCCCCCCCeEEEEEECCEEEEEEECCCCeEEEE---CCcccCCCCeEEEEEEEeCCEEEEEEC
Confidence            67888874     889875   5799999999999999999999886543   246899999999999999999999999


Q ss_pred             ccccc
Q psy6121          74 EEEKK   78 (126)
Q Consensus        74 ~~~~~   78 (126)
                      +....
T Consensus       129 ~~~~~  133 (204)
T 1pz7_A          129 NEAPI  133 (204)
T ss_dssp             TSCCE
T ss_pred             CcceE
Confidence            87543

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=99.66  E-value=2.7e-16  Score=116.70  Aligned_cols=75  Identities=20%  Similarity=0.353  Sum_probs=64.6

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||++.  ..||++|+|.+|+|.+.+++|++++.+   .+...+|||+||+|.+.|+.+.++|+||+
T Consensus        30 is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~~~~~---~s~~~vnDG~WH~V~v~~~~~~~~L~VD~  106 (170)
T 1d2s_A           30 SSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTV---GAGPRLDDGRWHQVEVKMEGDSVLLEVDG  106 (170)
T ss_dssp             EEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSCEEEE---ECSCCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEEecCCCCCCEEEEEEeCCEEEEEEECCCceEEE---eCCCccCCCCCEEEEEEEeCCEEEEEECC
Confidence            68889875     888865  479999999999999999999987544   23578999999999999999999999999


Q ss_pred             cccch
Q psy6121          75 EEKKK   79 (126)
Q Consensus        75 ~~~~~   79 (126)
                      .....
T Consensus       107 ~~~~~  111 (170)
T 1d2s_A          107 EEVLR  111 (170)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            87644

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=99.64  E-value=1.1e-15  Score=114.82  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=63.7

Q ss_pred             eEEeeece-----eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||.++   ..|||+|+|.+|+|.+.|++|+++..+..   ..++|||+||+|.+.|+.+.++|+||
T Consensus        39 isl~frT~~~~GlLl~~~~~~~~~d~l~l~L~~G~l~~~~~~G~~~~~l~s---~~~v~Dg~WH~V~v~r~~~~~~L~VD  115 (191)
T 3v64_A           39 FELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVVLRS---TVKVNTNRWLRIRAHREHREGSLQVG  115 (191)
T ss_dssp             EEEEEECSCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEESSSCCEEEEE---EEECTTSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEeCCCCeEEEEeCCCCCCCcEEEEEEECCEEEEEEECCCccEEEec---CccccCCCCEEEEEEEeCCEEEEEEC
Confidence            78888875     888865   57999999999999999999998865432   46899999999999999999999999


Q ss_pred             cccc
Q psy6121          74 EEEK   77 (126)
Q Consensus        74 ~~~~   77 (126)
                      +...
T Consensus       116 ~~~~  119 (191)
T 3v64_A          116 NEAP  119 (191)
T ss_dssp             TSCC
T ss_pred             Ceee
Confidence            9754

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=99.64  E-value=1.2e-15  Score=117.75  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             eEEeeece-----eeec--C-CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDG--S-DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLya--G-~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||.  . ...|||+|+|.+|+|.+.|++|+++..+.  .+...+|||+||+|.+.|+.+.++|+||
T Consensus        39 isl~FrT~~~~GlLly~~~~~~~~dfi~LeL~~G~l~~~~~~G~~~~~~~--~~~~~vnDG~WH~V~v~r~~~~~~L~VD  116 (220)
T 2r1b_A           39 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD  116 (220)
T ss_dssp             EEEEEECCCSSEEEEEEEESTTCCCEEEEEEETTEEEEEEESSSSCEEEE--CTTCCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCeEEEEEECCEEEEEEECCCCceEEE--eCceEecCCceEEEEEEEeCCEEEEEEC
Confidence            78899875     8884  3 36799999999999999999999886543  3346799999999999999999999999


Q ss_pred             ccccc
Q psy6121          74 EEEKK   78 (126)
Q Consensus        74 ~~~~~   78 (126)
                      +....
T Consensus       117 ~~~~~  121 (220)
T 2r1b_A          117 SWPVI  121 (220)
T ss_dssp             TSCCE
T ss_pred             Cccee
Confidence            98543

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=99.64  E-value=7.7e-16  Score=116.63  Aligned_cols=75  Identities=20%  Similarity=0.353  Sum_probs=64.8

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||++.  ..|||+|+|.+|+|.+.+++|++++.+   .+...+|||+||+|.+.|+.+.++|+||+
T Consensus        42 is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~~~~~---~s~~~vnDG~WH~V~v~r~~~~~~L~VD~  118 (205)
T 1f5f_A           42 SSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTV---GAGPRLDDGRWHQVEVKMEGDSVLLEVDG  118 (205)
T ss_dssp             EEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSCEEEE---ECSCCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCceEEE---ecCCccCCCCCEEEEEEEeCCEEEEEECC
Confidence            78889875     888865  469999999999999999999987544   23578999999999999999999999999


Q ss_pred             cccch
Q psy6121          75 EEKKK   79 (126)
Q Consensus        75 ~~~~~   79 (126)
                      .....
T Consensus       119 ~~~~~  123 (205)
T 1f5f_A          119 EEVLR  123 (205)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            87654

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=99.63  E-value=1.9e-15  Score=113.91  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=63.5

Q ss_pred             eEEeeece-----eeecC-------CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEE
Q psy6121           2 LTLSTDCW-----LGDGS-------DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGT   69 (126)
Q Consensus         2 IS~sfrtl-----LLyaG-------~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~s   69 (126)
                      |+|.|+|.     |||.+       ...|||+|+|.+|+|.+.|++|++++.+.   +..++|||+||+|.+.|+.+.++
T Consensus        34 is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g~~~~~---s~~~l~Dg~WH~V~v~r~~~~~~  110 (195)
T 3sh4_A           34 IELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLV---SEDPINDGEWHRVTALREGRRGS  110 (195)
T ss_dssp             EEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEETTEEEEEEECSSCEEEEE---EEEECCSSSCEEEEEEEETTEEE
T ss_pred             EEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeCCEEEEEEECCCCcEEEE---cCceeCCCCeEEEEEEEeCCEEE
Confidence            78889875     88875       25799999999999999999999886543   24689999999999999999999


Q ss_pred             EEecccccc
Q psy6121          70 GCGKEEEKK   78 (126)
Q Consensus        70 L~vd~~~~~   78 (126)
                      |+||+....
T Consensus       111 L~VD~~~~~  119 (195)
T 3sh4_A          111 IQVDGEELV  119 (195)
T ss_dssp             EEETTCCCE
T ss_pred             EEECCeeee
Confidence            999997643

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=99.61  E-value=3.7e-15  Score=115.96  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             eEEeeece-----eeecC---CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDGS---DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLyaG---~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||.+   ...|||+|+|.+|+|.+.|++|+++..+.  .+...+|||+||+|.+.|+.+.++|+||
T Consensus        67 isl~FrT~~~~GlLl~~~~~~~~~dfi~L~L~~G~l~~~~~~G~~~~~~~--~~~~~vnDG~WH~V~v~r~~~~~~L~VD  144 (226)
T 2r1d_A           67 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD  144 (226)
T ss_dssp             EEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSCEEEEE--CCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCEEEEEEECCEEEEEEECCCCcEEEE--eCCeEecCCCCEEEEEEEeCCEEEEEEc
Confidence            68899875     88853   36799999999999999999999887553  3346899999999999999999999999


Q ss_pred             ccc
Q psy6121          74 EEE   76 (126)
Q Consensus        74 ~~~   76 (126)
                      +..
T Consensus       145 ~~~  147 (226)
T 2r1d_A          145 SWP  147 (226)
T ss_dssp             TSC
T ss_pred             Ccc
Confidence            975

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=99.61  E-value=3.9e-15  Score=111.49  Aligned_cols=73  Identities=12%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             eEEeeece-----eeecCC----CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEe
Q psy6121           2 LTLSTDCW-----LGDGSD----GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCG   72 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~----~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~v   72 (126)
                      |+|.|+|.     |||+++    ..|||+|+|.+|++.+.+++|+++..+.   +..++|||+||+|.+.|+.+.++|+|
T Consensus        38 isl~frT~~~~GlLl~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g~~~l~---s~~~l~Dg~WH~V~v~r~~~~~~L~V  114 (189)
T 3pve_A           38 LEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIR---SKEPIALGTWVRVFLERNGRKGALQV  114 (189)
T ss_dssp             EEEEEEESSSCEEEEEEESCC-CCSCEEEEEEETTEEEEEEESSSCEEEEE---CSSCCCTTSEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEecCCCCCCCCeEEEEEECCEEEEEEecCCCCEEEE---cCcccCCCCEEEEEEEEeCCEEEEEE
Confidence            67888874     888864    4799999999999999999999876443   35789999999999999999999999


Q ss_pred             ccccc
Q psy6121          73 KEEEK   77 (126)
Q Consensus        73 d~~~~   77 (126)
                      |+...
T Consensus       115 D~~~~  119 (189)
T 3pve_A          115 GDGPR  119 (189)
T ss_dssp             TTSCC
T ss_pred             CCcee
Confidence            99764

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=99.56  E-value=1.5e-14  Score=118.23  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=64.4

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||+++  ..|||+|+|.+|+|.+.|++|+++..+.   +...+|||+||+|.+.|+.+.++|+||+
T Consensus        61 is~~frT~~~~GlLly~~~~~~~dfi~l~L~~G~l~~~~~~g~g~~~~~---~~~~~~Dg~WH~V~v~r~~~~~~L~VD~  137 (394)
T 1dyk_A           61 IELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTM---IPTKINDGQWHKIKIVRVKQEGILYVDD  137 (394)
T ss_dssp             EEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEESSSCEEEEE---CCSCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEeCCCCeEEEEcCCCCCCceEEEEEECCEEEEEEECCCCceEEE---cccccCCCCEEEEEEEEeCCEEEEEEcC
Confidence            68888875     899865  5799999999999999999999987553   2468999999999999999999999998


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       138 ~~~~  141 (394)
T 1dyk_A          138 ASSQ  141 (394)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            7654

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.55  E-value=2.3e-14  Score=116.06  Aligned_cols=75  Identities=15%  Similarity=0.274  Sum_probs=64.6

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.++  ..|||+|+|.+|+|.+.+++|+++..+.   +...+|||+||+|.+.|+.+.++|+||+
T Consensus        47 is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~~~~~~---~~~~~~Dg~WH~V~v~r~~~~~~L~VD~  123 (383)
T 2jd4_A           47 VQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKGRTKVS---HPALLSDGKWHTVKTEYIKRKAFMTVDG  123 (383)
T ss_dssp             EEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEECSSCEEEEE---CCCCCTTSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEcCCCCeEEEEeCCCCCCcEEEEEEECCEEEEEEECCCCeEEEe---CcceecCCCcEEEEEEEeCCEEEEEEcC
Confidence            67888875     888864  4799999999999999999999887543   2468999999999999999999999999


Q ss_pred             cccch
Q psy6121          75 EEKKK   79 (126)
Q Consensus        75 ~~~~~   79 (126)
                      .....
T Consensus       124 ~~~~~  128 (383)
T 2jd4_A          124 QESPS  128 (383)
T ss_dssp             EECCC
T ss_pred             ccccc
Confidence            76543

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.52  E-value=4.3e-14  Score=116.84  Aligned_cols=74  Identities=9%  Similarity=0.120  Sum_probs=63.6

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||++.  ..|||+|+|.+|+|.+.|++|+++..+   .+...+|||+||+|.+.|+.+.++|+||+
T Consensus        65 is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~~~~~---~~~~~~nDg~WH~V~v~r~~~~~~L~VD~  141 (422)
T 1h30_A           65 AEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVT---SSGPVINHGMWQTISVEELARNLVIKVNR  141 (422)
T ss_dssp             EEEEEEECCSSEEEEEEESCTTSEEEEEEEETTEEEEEEEETTEEEEE---EEEEECCSSCCEEEEEEECSSEEEEEETT
T ss_pred             EEEEEEeCCCCeEEEEECCCCCCcEEEEEEECCEEEEEEECCCCcEEE---ecCceecCCCCEEEEEEEcCCEEEEEECC
Confidence            78899875     889865  479999999999999999999987533   23468999999999999999999999999


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       142 ~~~~  145 (422)
T 1h30_A          142 DAVM  145 (422)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            7644

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.51  E-value=1.1e-13  Score=112.19  Aligned_cols=77  Identities=21%  Similarity=0.275  Sum_probs=64.9

Q ss_pred             eEEeeece-----eeecCC-CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCC-CcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD-GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPN-RLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~-~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s-~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.++ ..|||+|+|.+|+|.+.+++|++++.+...+. ...+|||+||+|.+.|+.+.++|.||+
T Consensus       224 isl~frT~~~~GlLl~~~~~~~d~l~l~L~~G~l~~~~~~g~g~~~~~~~~~~~~~l~DG~WH~V~l~~~~~~~~L~VD~  303 (383)
T 2jd4_A          224 ITLEFRTTSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDG  303 (383)
T ss_dssp             EEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEESSSCEEEEEECCSSTTGGGSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEEecCCCCcEEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCCcEEEEEEEcCCEEEEEECC
Confidence            68889875     888754 67999999999999999999998776554332 357999999999999999999999999


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       304 ~~~~  307 (383)
T 2jd4_A          304 NSVR  307 (383)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            7643

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.51  E-value=9e-14  Score=114.14  Aligned_cols=76  Identities=22%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             eEEeeece-----eeecC-CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEecee-EEEEecc
Q psy6121           2 LTLSTDCW-----LGDGS-DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE-GTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG-~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~-~sL~vd~   74 (126)
                      |+|.|+|.     |||.+ +..|||+|+|.+|+|.+.|++|+|+..+.. .+..++|||+||+|.+.|+.+. ++|.||+
T Consensus        30 is~~frT~~~~GlLly~~~~~~dfi~l~L~~G~l~~~~~~G~g~~~~~~-~s~~~vnDg~WH~V~v~r~~~~~~~l~VD~  108 (410)
T 3asi_A           30 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKG-SSNKPLNDNQWHNVMISRDTSNLHTVKIDT  108 (410)
T ss_dssp             EEEEEECSCSCEEEEEEEBSTTCEEEEEEETTEEEEEEESSSCEEEEEC-CCSSCSCSSSCEEEEEEECTTCEEEEEETT
T ss_pred             EEEEEEeCCCCeEEEEeCCCCCCEEEEEEECCEEEEEEECCCCcEEEEe-ccCcEeCCCCeEEEEEEEcCCceEEEEECC
Confidence            67888874     88864 468999999999999999999999865542 3457899999999999999876 8999998


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       109 ~~~~  112 (410)
T 3asi_A          109 KITT  112 (410)
T ss_dssp             EEEE
T ss_pred             Eece
Confidence            7543

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=99.49  E-value=1.2e-13  Score=118.49  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=65.3

Q ss_pred             eEEeeece-----eeecCCC--CCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSDG--SDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~~--~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.++.  .|||+|+|.+|+|.+.|++|+|+..+..  +...+|||+||+|.+.|+.+.++|+||+
T Consensus        35 isl~FrT~~~~glLly~~~~~~~dfl~l~L~~G~l~~~~~~G~g~~~l~~--~~~~~~dg~WH~V~v~r~~~~~~l~Vd~  112 (608)
T 2wjs_A           35 IVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEY--PDLTIDDSYWYRIEASRTGRNGSISVRA  112 (608)
T ss_dssp             EEEEEEESCSCEEEEEEECSSCSCEEEEEEETTEEEEEEESSSCEEEEEC--CSCCCTTSCCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEecCCCceEEEEeCCCCCCcEEEEEEECCEEEEEEECCCCceEEee--CCccccCCceEEEEEEEeCCEEEEEEec
Confidence            78889874     9998764  8999999999999999999999875542  3468999999999999999999999998


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       113 ~~~~  116 (608)
T 2wjs_A          113 LDGP  116 (608)
T ss_dssp             SSST
T ss_pred             ccCc
Confidence            7643

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=99.45  E-value=5e-13  Score=109.18  Aligned_cols=77  Identities=10%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             eEEeeece-----eeec-CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcC-CCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDG-SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRP-NRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLya-G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~-s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||. +...||++|+|.+|+|.+.+++|++...+.+.+ +...+|||+||+|.+.|+.+.++|.||+
T Consensus       236 is~~frT~~~~GlLl~~~~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~~~~~~~~~l~DG~WH~V~v~~~~~~~~L~VD~  315 (394)
T 1dyk_A          236 VEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDG  315 (394)
T ss_dssp             EEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEEecCCCCCEEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCceEEEEEEEeCCEEEEEECC
Confidence            67888875     8887 446799999999999999999998876554432 2467999999999999999999999999


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       316 ~~~~  319 (394)
T 1dyk_A          316 NQVD  319 (394)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            7543

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.45  E-value=3e-13  Score=125.23  Aligned_cols=75  Identities=27%  Similarity=0.513  Sum_probs=67.1

Q ss_pred             eEEeeece-----eeecCCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccc
Q psy6121           2 LTLSTDCW-----LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEE   76 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~   76 (126)
                      |+|.|+|.     |||+|+..|||+|+|++|+|.+.+++|+|++...+.++...+|||+||+|.+.|..+.++|+||+..
T Consensus       258 i~l~FrT~~~~GlLl~~g~~~d~l~L~L~~G~l~l~~~lG~g~~~~~~~~~~~~l~Dg~WH~V~v~r~~~~~~l~VD~~~  337 (1245)
T 3qcw_A          258 ITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGIL  337 (1245)
T ss_dssp             EEEEEECSCSCEEEEEECSSSEEEEEEEETTEEEEEEEESSCCEEEEECCCSSCSSSSSCEEEEEEEETTEEEEEESSSC
T ss_pred             EEEEEEeCCCCceEEEecCCCCEEEEEEECCEEEEEEEcCCCeEEEEEccCCcccCCCCEEEEEEEEeCCEEEEEECCcc
Confidence            78899974     9999889999999999999999999999987655555567899999999999999999999999864

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=99.40  E-value=1.1e-12  Score=112.48  Aligned_cols=72  Identities=15%  Similarity=0.301  Sum_probs=61.9

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||++.  ..|||+|+|.+|+|.+.+++|+++..+.   +...+|||+||+|.+.|+.+.++|+||+
T Consensus       229 isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~g~~~~~l~---s~~~~nDg~WH~V~v~r~~~~~~L~VD~  305 (608)
T 2wjs_A          229 VMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVV---SNQNHNDGKWKAFTLSRIQKQANISIVD  305 (608)
T ss_dssp             EEEEEEESCSEEEEEEEECTTSSSEEEEEEETTEEEEEEECSSCEEEEE---EEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEeCCCCeEEEEecCCCCCceEEEEEECCEEEEEEECCCCcEEEE---cCccccCCceEEEEEEEecceEEEEEec
Confidence            68888875     888854  5799999999999999999999886443   2468999999999999999999999998


Q ss_pred             cc
Q psy6121          75 EE   76 (126)
Q Consensus        75 ~~   76 (126)
                      ..
T Consensus       306 ~~  307 (608)
T 2wjs_A          306 ID  307 (608)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.36  E-value=3e-12  Score=105.08  Aligned_cols=75  Identities=15%  Similarity=0.196  Sum_probs=62.2

Q ss_pred             eEEeeece-----eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||.+.   ..|||+|+|.+|+|.+.+++|++++.+.  .+...+|||+||+|.+.|..+.++|.||
T Consensus       253 i~l~frT~~~~GlLl~~~~~~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~--~~~~~l~DG~wH~V~v~r~~~~~~L~VD  330 (410)
T 3asi_A          253 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD  330 (410)
T ss_dssp             EEEEEECCCSEEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSSCEEEE--CCSCCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEEecCCCCCceEEEEEeCCEEEEEEECCCCceEEe--cCccCcCCCCeEEEEEEEECCEEEEEEC
Confidence            57788764     888643   3699999999999999999999876443  3346899999999999999999999999


Q ss_pred             ccccc
Q psy6121          74 EEEKK   78 (126)
Q Consensus        74 ~~~~~   78 (126)
                      +....
T Consensus       331 ~~~~~  335 (410)
T 3asi_A          331 SWPVI  335 (410)
T ss_dssp             TSCCE
T ss_pred             Cccee
Confidence            97543

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=99.30  E-value=8.3e-12  Score=115.63  Aligned_cols=74  Identities=22%  Similarity=0.258  Sum_probs=62.5

Q ss_pred             eEEeeece-----eeec-CCCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEecee-EEEEecc
Q psy6121           2 LTLSTDCW-----LGDG-SDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQE-GTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLya-G~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~-~sL~vd~   74 (126)
                      |+|.|+|.     |||. +...|||+|+|.+|+|.+.|++|+|+..+.+ .+..++|||+||+|.+.|+.+. .+|+||+
T Consensus       862 is~~frT~~~~GlLly~~~~~~dfi~l~L~~G~l~~~~~~G~g~~~~~~-~s~~~vnDg~WH~V~~~~~~~~~~~L~VD~  940 (1245)
T 3qcw_A          862 LFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKG-SSNKPLNDNQWHNVMISRDTSNLHTVKIDT  940 (1245)
T ss_dssp             EEEEEECSCSCEEEEEEEESTTCEEEEEEETTEEEEEEESSSCCEEEEC-CCSSCSCSSSCEEEEEEECTTCEEEEEETT
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCCEEEEEEeCCEEEEEEECCCCcEEEEe-cCcccccCCCeEEEEEEEeCCeeEEEEECC
Confidence            78888875     7876 4568999999999999999999999875543 3457899999999999999865 7899999


Q ss_pred             cc
Q psy6121          75 EE   76 (126)
Q Consensus        75 ~~   76 (126)
                      ..
T Consensus       941 ~~  942 (1245)
T 3qcw_A          941 KI  942 (1245)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.04  E-value=2.2e-10  Score=94.61  Aligned_cols=71  Identities=15%  Similarity=0.002  Sum_probs=54.7

Q ss_pred             eEEeeece-----eeecCC-C--CCeEEEEEeCCEE-------EEEEEcCCceEEEEEcCCCcccCCCCceEE--EEEEe
Q psy6121           2 LTLSTDCW-----LGDGSD-G--SDYLNVAIKDGGV-------AINLKLAMGKLDMYIRPNRLRFDDNQWHHL--SIHRR   64 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~-~--~DFIaLeL~~G~L-------~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V--~v~R~   64 (126)
                      |+|.|+|.     |||.++ .  .|||+|+|.+|++       .+.++.|+++. ..+   ...+|||+||+|  .+.|+
T Consensus       253 is~~fRT~~~~GlLl~~~~~~~~~d~l~l~L~~G~le~~~~~~~l~~~~~~g~~-~~~---~~~l~DG~WH~V~~~l~~~  328 (422)
T 1h30_A          253 VVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTAL-ALM---EIKVCDGQEHVVTVSLRDG  328 (422)
T ss_dssp             EEEEEEESSSCEEEEEEEEGGGTEEEEEEEEESCC-----CCCEEEEEETTEEE-EEE---ECCTTSSCCEEEEEEEETT
T ss_pred             EEEEEecCCCCEEEEEecCCCcCCCcEEEEEEcCccccccccceEEEEeCCeeE-EEe---eecccCCCEeEeEEEEEEe
Confidence            67888875     888753 2  6999999999998       68888888763 222   368999999999  88887


Q ss_pred             ceeEEEEecccccc
Q psy6121          65 IQEGTGCGKEEEKK   78 (126)
Q Consensus        65 ~r~~sL~vd~~~~~   78 (126)
                      .+.  |.||.....
T Consensus       329 ~~~--L~vD~~~~~  340 (422)
T 1h30_A          329 EAT--LEVDGTRGQ  340 (422)
T ss_dssp             EEE--EEETTEECE
T ss_pred             ccE--EEEeCCccc
Confidence            766  888886543

>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A

Probab=97.60  E-value=0.00055  Score=52.17  Aligned_cols=63  Identities=8%  Similarity=0.130  Sum_probs=47.7

Q ss_pred             CCeEEEEEeCC--EEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121          17 SDYLNVAIKDG--GVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR   81 (126)
Q Consensus        17 ~DFIaLeL~~G--~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~   81 (126)
                      .-++.|.+...  .+.+.|+..+....... . ..++.|++||+|.+.-.+..++|.||-.....+.
T Consensus        90 ~~ql~l~l~g~~~~l~~~y~~~g~~~~~~f-~-~v~l~dg~WH~l~l~V~~~~v~L~vDC~~~~~~~  154 (209)
T 2erf_A           90 GQVFSVVSNGKAGTLDLSLTVQGKQHVVSV-E-EALLATGQWKSITLFVQEDRAQLYIDCEKMENAE  154 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEETTEEEEEEE-S-SCCCCSSSEEEEEEEEETTEEEEEETTTEEEEEE
T ss_pred             EEEEEEEEcCCCCEEEEEEcCCCCEEEEEE-e-ccccCCCcEEEEEEEEECCEEEEEEcCeEeEeEE
Confidence            67899998654  68888865443433332 2 3579999999999999999999999998765443

>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A

Probab=97.48  E-value=0.00092  Score=52.54  Aligned_cols=62  Identities=10%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             CCeEEEEEeC--CEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchh
Q psy6121          17 SDYLNVAIKD--GGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKR   80 (126)
Q Consensus        17 ~DFIaLeL~~--G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~   80 (126)
                      .-++.|.+..  ..|.|.|...++...... . ..++.|++||+|.+.-.+..++|.||-.....+
T Consensus       100 ~~ql~l~~~G~~~~l~~~Y~~~g~~~~~~f-~-~~~L~Dg~WH~lalsV~~~~VtLyvDC~~~~~~  163 (251)
T 1za4_A          100 GQVFSVVSNGKAGTLDLSLTVQGKQHVVSV-E-EALLATGQWKSITLFVQEDRAQLYIDCEKMENA  163 (251)
T ss_dssp             CEEEEEEEETTTTEEEEEEEETTEEEEEEE-S-SCCCCSSSCEEEEEEEETTEEEEEETTSCCEEE
T ss_pred             EEEEEEEECCCCcEEEEEEEcCCCeeeEEE-e-cccccCCCEEEEEEEEECCEEEEEECCccccee
Confidence            4577777644  368888876544432333 2 357999999999999999999999999876544

>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}

Probab=97.41  E-value=0.001  Score=52.13  Aligned_cols=66  Identities=20%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             CCCeEEEEEeCC--EEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccchhc
Q psy6121          16 GSDYLNVAIKDG--GVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKKKRR   81 (126)
Q Consensus        16 ~~DFIaLeL~~G--~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~~~~   81 (126)
                      +..++.|.|..+  .+.+.+.-..|...........++.||+||+|.+.-.+..++|.||=.....+.
T Consensus       115 ~~~qlgv~l~g~~~~l~~~y~~~~g~~q~v~F~~~~~L~Dg~WHklalsV~~~~VtLyvDC~~~~~~~  182 (245)
T 2uur_A          115 GKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLP  182 (245)
T ss_dssp             SCEEEEEEEEGGGTEEEEEEEBTTSCEEEEEECCCGGGCSSSCEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEcCCCCEEEEEecCCCCCeeEEEecCCccccCCCEEEEEEEEECCEEEEEEecCcccccc
Confidence            456888888754  477776544443333333321259999999999999999999999988765443

>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}

Probab=96.49  E-value=0.014  Score=44.89  Aligned_cols=75  Identities=15%  Similarity=0.124  Sum_probs=50.6

Q ss_pred             eEEeeece------eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEE-EEEcCCCcccCCCCceEEEEEEec-eeEEE
Q psy6121           2 LTLSTDCW------LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFDDNQWHHLSIHRRI-QEGTG   70 (126)
Q Consensus         2 IS~sfrtl------LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~-~~i~~s~~~lnDgqWH~V~v~R~~-r~~sL   70 (126)
                      |.+.|++-      ||-.++   ...|+.|.|.+|.+.+.+.--++... ....+.....+| +||+|.+.-+. ...+|
T Consensus        44 I~v~fks~~~~~q~LfSIsN~k~~n~yf~lyi~~g~lg~e~R~~~~~~~~~~~~~a~v~~~~-~wntvaf~~d~~~~~~l  122 (191)
T 2v73_A           44 IVTRFNMNDTSIQSLIGLSDGNKANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFNR-GINTLALKIEKGIGAKI  122 (191)
T ss_dssp             EEEEEEECCCSCEEEEEEECTTCSSCEEEEEECSSEEEEEEEECTTSSCEEEEEEEECCCCS-SCEEEEEEEETTTEEEE
T ss_pred             EEEEEecCCCcceEEEEccCCCCccceEEEEEeCCEEEEEEecCCCceeeeeecccceecCC-ceEEEEEEEcCCccEEE
Confidence            55666542      665544   45799999999998888886333321 112233344444 99999998875 58999


Q ss_pred             Eeccccc
Q psy6121          71 CGKEEEK   77 (126)
Q Consensus        71 ~vd~~~~   77 (126)
                      -+|++.-
T Consensus       123 y~NG~~V  129 (191)
T 2v73_A          123 FLNGSLV  129 (191)
T ss_dssp             EETTEEE
T ss_pred             EECCEEE
Confidence            9998754

>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A

Probab=94.41  E-value=0.42  Score=35.18  Aligned_cols=68  Identities=9%  Similarity=-0.139  Sum_probs=45.0

Q ss_pred             ceeeec-CCCCCeEEEEEeC--CEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEeccccc
Q psy6121           8 CWLGDG-SDGSDYLNVAIKD--GGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEK   77 (126)
Q Consensus         8 tlLLya-G~~~DFIaLeL~~--G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~   77 (126)
                      |++|.+ .+...+-.+.|..  +.+.+.-..++....+..  ....+..++||+++|...+..+++.||+..-
T Consensus        84 Gi~fR~~~d~~~gY~~~i~~~~~~~~l~k~~~g~~~~L~~--~~~~~~~g~w~~l~I~~~G~~i~~~vnG~~v  154 (185)
T 4b1m_A           84 ALMFRSDKDAKNGYLANVDAKHDLVKFFKFENGAASVIAE--YKTPIDVNKKYHLKTEAEGDRFKIYLDDRLV  154 (185)
T ss_dssp             EEEEEECTTSSSEEEEEEETTTTEEEEEEEETTEEEEEEE--EECCCCSSCCEEEEEEEETTEEEEEETTEEE
T ss_pred             EEEEEEcCCCCCcEEEEEECCCCEEEEEEEeCCcEEEeee--ccccCCCCCeEEEEEEEECCEEEEEECCEEE
Confidence            346666 4455777777765  455443323332221211  1247889999999999999999999999753

>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A

Probab=93.26  E-value=0.32  Score=36.67  Aligned_cols=30  Identities=10%  Similarity=0.046  Sum_probs=25.7

Q ss_pred             cccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121          49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK   78 (126)
Q Consensus        49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~   78 (126)
                      ..++|++||+|.++.+..  ..+|-||+....
T Consensus        92 ~~~~~g~W~Hv~~t~d~~~G~~~lYvdG~~~~  123 (217)
T 3flp_A           92 IEIELGQWYHVCHVWSGVDGRMAVYANGSPCG  123 (217)
T ss_dssp             EECCTTSCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred             cccCCCCEEEEEEEEECCCCEEEEEECCEEec
Confidence            469999999999999874  678999998764

>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*

Probab=92.55  E-value=0.61  Score=34.98  Aligned_cols=30  Identities=3%  Similarity=-0.274  Sum_probs=25.3

Q ss_pred             cccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121          49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK   78 (126)
Q Consensus        49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~   78 (126)
                      .+++|++||+|.++.+..  ...|-||+....
T Consensus        84 ~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~  115 (204)
T 3kqr_A           84 VIEKFPAPVHICVSWESSSGIAEFWINGTPLV  115 (204)
T ss_dssp             CCCCSSCCEEEEEEEETTTCEEEEEETTEECC
T ss_pred             cccCCCceEEEEEEEECCCCeEEEEECCEEee
Confidence            468999999999999865  678999998654

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=92.55  E-value=0.012  Score=49.29  Aligned_cols=37  Identities=16%  Similarity=-0.024  Sum_probs=30.9

Q ss_pred             eceeeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEE
Q psy6121           7 DCWLGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMY   43 (126)
Q Consensus         7 rtlLLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~   43 (126)
                      .|+++|.++  ..|||+|+|.+|++.+.|++|+.+..+.
T Consensus       367 ~G~cl~~~~~~~~d~ial~l~~G~v~~syd~G~~~~~v~  405 (423)
T 2gy5_A          367 DGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN  405 (423)
T ss_dssp             TSCEECCSEEEECSSCEEEECCEEEECGGGCEEEEEEEE
T ss_pred             CeEEEeCCCcCcccceeeeEEeeeEEEeecCCCcceEEE
Confidence            456888765  6799999999999999999998876554

>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A

Probab=90.60  E-value=0.63  Score=34.81  Aligned_cols=30  Identities=3%  Similarity=-0.270  Sum_probs=25.4

Q ss_pred             cccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121          49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK   78 (126)
Q Consensus        49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~   78 (126)
                      .+++|++||+|.++.+..  .++|-||+....
T Consensus        86 ~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~  117 (206)
T 3pvn_A           86 VPEVTVAPVHICTSWESASGIVEFWVDGKPRV  117 (206)
T ss_dssp             CSSCCSSCEEEEEEEETTTCEEEEEETTEECC
T ss_pred             ccCCCCceEEEEEEEECCCCeEEEEECCEEcc
Confidence            468999999999999864  678999998654

>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}

Probab=88.69  E-value=0.59  Score=37.99  Aligned_cols=32  Identities=13%  Similarity=0.110  Sum_probs=27.9

Q ss_pred             CcccCCCCceEEEEEEe--ceeEEEEecccccch
Q psy6121          48 RLRFDDNQWHHLSIHRR--IQEGTGCGKEEEKKK   79 (126)
Q Consensus        48 ~~~lnDgqWH~V~v~R~--~r~~sL~vd~~~~~~   79 (126)
                      ..++.+|+||+|.+..+  ...++|-||+..-..
T Consensus       215 ~~~l~~g~W~HvA~t~d~~~~~~~lYvNG~~~~~  248 (355)
T 4dqa_A          215 TKPLLTNRWYHVALTYDQPTGKTGIYVNGEKWAG  248 (355)
T ss_dssp             SSCCCSSCEEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred             CCcccCCCEEEEEEEEECCCCEEEEEECCEEEEE
Confidence            35799999999999999  889999999976544

>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A*

Probab=87.95  E-value=2.3  Score=37.60  Aligned_cols=60  Identities=15%  Similarity=0.299  Sum_probs=39.6

Q ss_pred             CeEEEEEeC-CEEEEEEEcCCceEEEEE-cCCCcccC---CC--CceEEEEEEe--ceeEEEEecccccch
Q psy6121          18 DYLNVAIKD-GGVAINLKLAMGKLDMYI-RPNRLRFD---DN--QWHHLSIHRR--IQEGTGCGKEEEKKK   79 (126)
Q Consensus        18 DFIaLeL~~-G~L~l~~nlGsG~~~~~i-~~s~~~ln---Dg--qWH~V~v~R~--~r~~sL~vd~~~~~~   79 (126)
                      .||.|.|.+ |.+.+.+.-.++.+...+ .+.  .|.   .+  +||+|.+.-+  ...++|-||+..-..
T Consensus        67 ~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~va~~~~~~~~~~~lyvnG~~v~~  135 (679)
T 2sli_A           67 RHFHIYITNSGGIGIELRNTDGVFNYTLDRPA--SVRALYKGERVFNTVALKADAANKQCRLFANGELLAT  135 (679)
T ss_dssp             EEEEEEEETTSCEEEEEEECTTTCEEEEEESS--CCCSEETTEECCEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred             cceEEEEcCCCeEEEEEecCCCCeeeeccccc--ccccccCCCceeEEEEEEEECCCCeEEEEECCEEeEe
Confidence            699999985 677777554433221111 222  232   24  7999999998  689999999976543

>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*

Probab=86.72  E-value=4.5  Score=35.70  Aligned_cols=61  Identities=13%  Similarity=0.201  Sum_probs=41.2

Q ss_pred             CCeEEEEEe-CCEEEEEEEcCCceEE-EEEcCCCcccC---CC--CceEEEEEEe--ceeEEEEecccccch
Q psy6121          17 SDYLNVAIK-DGGVAINLKLAMGKLD-MYIRPNRLRFD---DN--QWHHLSIHRR--IQEGTGCGKEEEKKK   79 (126)
Q Consensus        17 ~DFIaLeL~-~G~L~l~~nlGsG~~~-~~i~~s~~~ln---Dg--qWH~V~v~R~--~r~~sL~vd~~~~~~   79 (126)
                      ..|+.|.|. +|.+.+.+.-.++... ....|.  .+.   .+  .||+|.+..+  ...++|-||+..-..
T Consensus        88 ~~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~va~~~d~~~~~~~lyvnG~~v~~  157 (686)
T 2jkb_A           88 NNYFSIFMRDSGEIGVEIRDAQKGINYLFSRPA--SLWGKHKGQAVENTLVFVSDSKDKTYTMYVNGIEVFS  157 (686)
T ss_dssp             TCEEEEEEETTSCEEEEEEETTTTEEEEEEESS--CCCCEETTEECCEEEEEEEETTTTEEEEEETTEEEEE
T ss_pred             CcceEEEEcCCCeEEEEEecCCCCeeeeccccc--cccccccCCcceeEEEEEEECCCCeEEEEECCEEEEe
Confidence            368999997 7777777765544321 112222  233   34  8999999998  679999999976543

>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*

Probab=82.30  E-value=4.2  Score=35.98  Aligned_cols=56  Identities=11%  Similarity=-0.024  Sum_probs=41.0

Q ss_pred             eEEEEEe-CCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEeccccc
Q psy6121          19 YLNVAIK-DGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEK   77 (126)
Q Consensus        19 FIaLeL~-~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~   77 (126)
                      ++.+.|. +|.+.+.-++++-.+...   ....+..+.||++.|.-.+..++..||+..-
T Consensus       565 gy~~~i~~~G~~~l~~~~~~~~vLa~---g~~~~~~~~w~~L~l~~~G~~i~~~ldG~~v  621 (656)
T 3zr5_A          565 GVFFWIFANGSYRVTADLGGWITYAS---GHADVTAKRWYTLTLGIKGYFAFGMLNGTIL  621 (656)
T ss_dssp             EEEEEEETTTEEEEEEETTCCSEEEE---EECSCCTTCEEEEEEEEETTEEEEEETTEEE
T ss_pred             eEEEEEEcCCEEEEEEecCCeEEEEE---EEecCCCCceEEEEEEEECCEEEEEECCEEE
Confidence            4444444 888888877765332222   2347999999999999999999999999544

>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}

Probab=80.85  E-value=0.37  Score=34.43  Aligned_cols=30  Identities=13%  Similarity=-0.064  Sum_probs=26.0

Q ss_pred             CcccCCCCceEEEEEEeceeEEEEeccccc
Q psy6121          48 RLRFDDNQWHHLSIHRRIQEGTGCGKEEEK   77 (126)
Q Consensus        48 ~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~   77 (126)
                      ..++..++||+++|.-.+..+++-||+..-
T Consensus       104 ~~~~~~g~w~~l~I~~~G~~i~~~vnG~~v  133 (172)
T 4azz_A          104 KTPIDVNKKYHLKTEAEGDRFKIYLDDRLV  133 (172)
Confidence            346889999999999999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	4e-06
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	7e-05
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	1e-04
d1h30a2	218	b.29.1.4 (A:461-678) Growth-arrest-specific protei	2e-04
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	0.002

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (97), Expect = 4e-06
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 10  LGDGSDGSDYLNVAIKDGGVAINLKLAMGKLD-MYIRPNRLRFDDNQWHHLSIHRRIQEG 68
           LG  S   D + + + D  +  ++    G+   +Y         + QWH ++  +     
Sbjct: 42  LGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRL 101

Query: 69  T 69
            
Sbjct: 102 E 102

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 7e-05
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 3   TLSTDCWL--GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLS 60
           T   +  L    G   S ++ +A++ G + + L+           P     +   W  +S
Sbjct: 67  TFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP---VINHGMWQTIS 123

Query: 61  IHRRIQEGT 69
           +    +   
Sbjct: 124 VEELARNLV 132

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 3   TLSTDCWL--GDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLS 60
           T   +  +  GD +   D+  + ++DG   I L     +L +   P   R DD +WH + 
Sbjct: 36  TWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGP---RLDDGRWHQVE 92

Query: 61  IHRRIQEGT 69
           +        
Sbjct: 93  VKMEGDSVL 101

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 3/77 (3%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDM---YIRPNRLRFDDNQWHHLSIHRRI 65
            L      +  L+VA+ D      LK  +  L +    +    ++  D Q H +++  R 
Sbjct: 64  ALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRD 123

Query: 66  QEGTGCGKEEEKKKRRE 82
            E T        +    
Sbjct: 124 GEATLEVDGTRGQSEVS 140

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 9   WLGDGSDGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEG 68
           ++    + +D+  V +++G    +  L  G     I     + +D QWH + I R  QEG
Sbjct: 57  YMARI-NHADFATVQLRNGFPYFSYDLGSGDTSTMIPT---KINDGQWHKIKIVRVKQEG 112

Query: 69  T 69
            
Sbjct: 113 I 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.61
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	99.59
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.58
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	99.58
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	99.57
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	99.57
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	99.18
d2erfa1	206	Thrombospondin 1 N-terminal domain {Human (Homo sa	97.56
d2slia1	196	Leech intramolecular trans-sialidase, N-terminal d	95.38
d1epwa1	218	Botulinum neurotoxin {Clostridium botulinum, serot	94.73
d3btaa1	207	Botulinum neurotoxin {Clostridium botulinum, serot	94.16
d1a8da1	247	Tetanus neurotoxin {Clostridium tetani [TaxId: 151	93.86
d1b09a_	206	C-reactive protein (CRP) {Human (Homo sapiens) [Ta	92.74
d1saca_	204	Serum amyloid P component (SAP) {Human (Homo sapie	91.44
d1oq1a_	223	Hypothetical protein YesU {Bacillus subtilis [TaxI	83.62

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.7e-15  Score=111.32  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=63.6

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.++  ..|||+|+|.+|+|.+.+++|+++..+.   +...+|||+||+|.+.|..+.++|.||+
T Consensus        42 i~~~frT~~~~GlL~~~~~~~~~dfi~l~l~~G~l~~~~~~g~~~~~~~---~~~~v~Dg~WH~V~v~~~~~~~~l~VD~  118 (189)
T d1dyka1          42 IELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTM---IPTKINDGQWHKIKIVRVKQEGILYVDD  118 (189)
T ss_dssp             EEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEESSSCEEEEE---CCSCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEECCCCEEEEEEcCCCCCcEEEEEEECCEEEEEEECCCccEEec---CCcEeeCCCEEEEEEEEcccEEEEEECC
Confidence            78889875     888754  6699999999999999999999886543   2467999999999999999999999998


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       119 ~~~~  122 (189)
T d1dyka1         119 ASSQ  122 (189)
T ss_dssp             EEEE
T ss_pred             ccee
Confidence            7543

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-15  Score=109.96  Aligned_cols=75  Identities=11%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             eEEeeece-----eeecCC--CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD--GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~--~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|+|+|.     |||+++  ..|||+|+|.+|+|.+.+++|+++..+..   ...+|||+||+|.+.|..+.++|+||+
T Consensus        61 i~~~FrT~~~~GlL~~~~~~~~~~fi~l~l~~G~l~~~~~~g~~~~~~~~---~~~v~Dg~WH~V~v~r~~~~~~l~VD~  137 (191)
T d1h30a1          61 AEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGRVTSS---GPVINHGMWQTISVEELARNLVIKVNR  137 (191)
T ss_dssp             EEEEEEECCSSEEEEEEESCTTSEEEEEEEETTEEEEEEEETTEEEEEEE---EEECCSSCCEEEEEEECSSEEEEEETT
T ss_pred             EEEEEEeCCCCeEEEEEcCCCCCcEEEEEEECCEEEEEEEcCCCcEEecC---CccccCCCEEEEEEEEeCCEEEEEECC
Confidence            67889875     888744  55899999999999999999998765432   468999999999999999999999998


Q ss_pred             cccch
Q psy6121          75 EEKKK   79 (126)
Q Consensus        75 ~~~~~   79 (126)
                      .....
T Consensus       138 ~~~~~  142 (191)
T d1h30a1         138 DAVMK  142 (191)
T ss_dssp             EEEEE
T ss_pred             cceEE
Confidence            76543

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6e-15  Score=107.56  Aligned_cols=77  Identities=10%  Similarity=0.107  Sum_probs=63.8

Q ss_pred             eEEeeece-----eeecCC-CCCeEEEEEeCCEEEEEEEcCCceEEEEEcC-CCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGSD-GSDYLNVAIKDGGVAINLKLAMGKLDMYIRP-NRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~-~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~-s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||+++ ..|||+|+|.+|+|.+.+++|+++....... ....+|||+||.|.+.|..+.++|.||+
T Consensus        28 is~~frT~~~~GlLl~~~~~~~d~~~l~l~~G~l~~~~~~g~~~~~~~~~~~~~~~l~Dg~WH~V~i~~~~~~~~l~vD~  107 (185)
T d1dyka2          28 VEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDG  107 (185)
T ss_dssp             EEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEECCCCEEEEEeCCCCCceEEEEEECCeEEEEEECCCCeEEEEEEccCCceecCCCEEEEEEEEcCCEEEEEEee
Confidence            68888875     888654 6799999999999999999999876544332 2457999999999999999999999997


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       108 ~~~~  111 (185)
T d1dyka2         108 NQVD  111 (185)
T ss_dssp             EEEE
T ss_pred             ccee
Confidence            5533

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.58  E-value=5.4e-15  Score=109.04  Aligned_cols=74  Identities=24%  Similarity=0.299  Sum_probs=62.4

Q ss_pred             eEEeeece-----eeecCC---CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDGSD---GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~---~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||++.   ..|||+|+|.+|+|.+.+++|+++..+.   +..+++||+||+|.+.|..+.++|+||
T Consensus        46 i~l~frT~~~~GlLly~~~~~~~~df~~l~L~~G~l~~~~~~g~~~~~~~---~~~~v~dg~wh~V~i~r~~~~~~l~VD  122 (195)
T d1pz7a_          46 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLR---STVPINTNHWTHIKAYRVQREGSLQVG  122 (195)
T ss_dssp             EEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEESSSCCEEEE---EEEECCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEEcCCCCCCCEEEEEEECCEEEEEEEcCCCCEEEe---CCceecCCCEEEEEEEEcCcEEEEEEe
Confidence            67888864     888753   5689999999999999999999876543   246799999999999999999999999


Q ss_pred             ccccc
Q psy6121          74 EEEKK   78 (126)
Q Consensus        74 ~~~~~   78 (126)
                      +....
T Consensus       123 ~~~~~  127 (195)
T d1pz7a_         123 NEAPI  127 (195)
T ss_dssp             TSCCE
T ss_pred             cccee
Confidence            86543

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.1e-15  Score=107.01  Aligned_cols=74  Identities=20%  Similarity=0.331  Sum_probs=63.6

Q ss_pred             eEEeeece-----eeecC--CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecc
Q psy6121           2 LTLSTDCW-----LGDGS--DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKE   74 (126)
Q Consensus         2 IS~sfrtl-----LLyaG--~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~   74 (126)
                      |+|.|+|.     |||.+  ...|||+|+|.+|+|.+.+++|+++..+.   +...+|||+||.|.+.|+.+.++|+||+
T Consensus        30 isf~FrT~~~~GlL~~~~~~~~~~fi~L~L~~G~l~~~~~~g~~~~~~~---s~~~~~dg~WH~V~i~~~~~~~~L~VD~  106 (170)
T d1d2sa_          30 SSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVG---AGPRLDDGRWHQVEVKMEGDSVLLEVDG  106 (170)
T ss_dssp             EEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSCEEEEE---CSCCCCSSSCEEEEEEEETTEEEEEETT
T ss_pred             EEEEEEECCCCEEEEEEcCCCCCcEEEEEEECCEEEEEEeCCCcceEEe---cccccCCCceEEEEEEEECCEEEEEECC
Confidence            78999985     88874  36689999999999999999999876543   2467999999999999999999999998


Q ss_pred             cccc
Q psy6121          75 EEKK   78 (126)
Q Consensus        75 ~~~~   78 (126)
                      ....
T Consensus       107 ~~~~  110 (170)
T d1d2sa_         107 EEVL  110 (170)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            7654

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=9.5e-15  Score=105.60  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             eEEeeece-----eeecC---CCCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEec
Q psy6121           2 LTLSTDCW-----LGDGS---DGSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGK   73 (126)
Q Consensus         2 IS~sfrtl-----LLyaG---~~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd   73 (126)
                      |+|.|+|.     |||.+   ...|||+|.|.+|+|.+.+++|+++....  .+..++|||+||+|.+.|+.+.++|+||
T Consensus        32 is~~FrT~~~~G~Ll~~~~~~~~~~~l~l~l~~G~l~~~~~~g~~~~~~~--~~~~~vnDg~WH~V~v~~~~~~~~L~VD  109 (177)
T d2r1da1          32 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIE--ESNAIINDGKYHVVRFTRSGGNATLQVD  109 (177)
T ss_dssp             EEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEESSSCEEEEE--CCSSCCCSSSCEEEEEEEETTEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEEcCCCCCCcEEEEEEECCEEEEEEcCCCceEEEE--eCCceecCCCEEEEEEEEECCEEEEEEC
Confidence            78899975     88863   25689999999999999999998775432  3457899999999999999999999999


Q ss_pred             ccccc
Q psy6121          74 EEEKK   78 (126)
Q Consensus        74 ~~~~~   78 (126)
                      +....
T Consensus       110 ~~~~~  114 (177)
T d2r1da1         110 SWPVI  114 (177)
T ss_dssp             TSCCE
T ss_pred             CeeeE
Confidence            86543

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-11  Score=91.38  Aligned_cols=77  Identities=12%  Similarity=-0.066  Sum_probs=50.0

Q ss_pred             eEEeeece-----eeecCC-CCCeEEEEEeCCEEEEEEEcCCceEEEEEc-----CCCcccCCCCceEEEEEEeceeEEE
Q psy6121           2 LTLSTDCW-----LGDGSD-GSDYLNVAIKDGGVAINLKLAMGKLDMYIR-----PNRLRFDDNQWHHLSIHRRIQEGTG   70 (126)
Q Consensus         2 IS~sfrtl-----LLyaG~-~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~-----~s~~~lnDgqWH~V~v~R~~r~~sL   70 (126)
                      |+|.|+|.     |||++. ..+++.+++..+.+++.+++|.+.......     .+...+|||+||+|.+.|..+.++|
T Consensus        49 isl~frT~~~~GlLl~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~lnDg~WH~V~v~~~~~~~~L  128 (218)
T d1h30a2          49 VVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATL  128 (218)
T ss_dssp             EEEEEEESSSCEEEEEEEEGGGTEEEEEEEEESCC-----CCCEEEEEETTEEEEEEECCTTSSCCEEEEEEEETTEEEE
T ss_pred             EEEEEEcCCCCcEEEEEecCCCceEEEEEEeeEEEEEEccCcceEEeccCceEEeccccccCCCCeEEEEEEEECCEEEE
Confidence            67889875     888754 456666655555545555555544322211     1235799999999999999999999


Q ss_pred             Eecccccc
Q psy6121          71 CGKEEEKK   78 (126)
Q Consensus        71 ~vd~~~~~   78 (126)
                      +||+....
T Consensus       129 ~VD~~~~~  136 (218)
T d1h30a2         129 EVDGTRGQ  136 (218)
T ss_dssp             EETTEECE
T ss_pred             EEecccce
Confidence            99986543

>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Thrombospondin 1 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.0005  Score=48.91  Aligned_cols=60  Identities=10%  Similarity=0.183  Sum_probs=44.1

Q ss_pred             CCeEEEEEeC--CEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEeceeEEEEecccccc
Q psy6121          17 SDYLNVAIKD--GGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKK   78 (126)
Q Consensus        17 ~DFIaLeL~~--G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~   78 (126)
                      ..++.+.+..  +.+.+.+..+++......  ...++.|++||+|.+...+..++|-||+..-.
T Consensus        87 ~~~~~l~~~g~~~~l~~~~~~~~~~~~~~~--~~~~l~d~~Whhva~~~~~~~v~lyvD~~~~~  148 (206)
T d2erfa1          87 GQVFSVVSNGKAGTLDLSLTVQGKQHVVSV--EEALLATGQWKSITLFVQEDRAQLYIDCEKME  148 (206)
T ss_dssp             CEEEEEEEETTTTEEEEEEEETTEEEEEEE--SSCCCCSSSEEEEEEEEETTEEEEEETTTEEE
T ss_pred             EEEEEEEEcCCCCEEEEEEeCCCceEEEEe--ccccccCCCEEEEEEEEeCCEEEEEECCEEEE
Confidence            3466676664  357777776654433322  24679999999999999999999999998754

>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Leech intramolecular trans-sialidase, N-terminal domain
domain: Leech intramolecular trans-sialidase, N-terminal domain
species: North american leech (Macrobdella decora) [TaxId: 6405]

Probab=95.38  E-value=0.03  Score=38.24  Aligned_cols=61  Identities=10%  Similarity=0.109  Sum_probs=37.3

Q ss_pred             CeEEEEEeCC-EEEEEEEcCC--ceEEEEEcC--CCcccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121          18 DYLNVAIKDG-GVAINLKLAM--GKLDMYIRP--NRLRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK   78 (126)
Q Consensus        18 DFIaLeL~~G-~L~l~~nlGs--G~~~~~i~~--s~~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~   78 (126)
                      .++.+.+... .+.+.+..+.  .........  ....++|++||+|.+.++..  .++|-||+....
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~hva~t~d~~~~~~~lYvnG~~~~  134 (196)
T d2slia1          67 RHFHIYITNSGGIGIELRNTDGVFNYTLDRPASVRALYKGERVFNTVALKADAANKQCRLFANGELLA  134 (196)
T ss_dssp             EEEEEEEETTSCEEEEEEECTTTCEEEEEESSCCCSEETTEECCEEEEEEEETTTTEEEEEETTEEEE
T ss_pred             CEEEEEEeCCCceEEEEeeccccceEeecccceeecceecCCcEEEEEEEEECCCCEEEEEECCeEEE
Confidence            4566665554 4655554333  222222211  12358999999999999754  478999997654

>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype B [TaxId: 1491]

Probab=94.73  E-value=0.13  Score=34.57  Aligned_cols=61  Identities=11%  Similarity=0.101  Sum_probs=42.9

Q ss_pred             CeEEEEEeCCEEEEEEEcCCceEEEE----EcCCCcccCCCCceEEEEEEeceeEEEEecccccc
Q psy6121          18 DYLNVAIKDGGVAINLKLAMGKLDMY----IRPNRLRFDDNQWHHLSIHRRIQEGTGCGKEEEKK   78 (126)
Q Consensus        18 DFIaLeL~~G~L~l~~nlGsG~~~~~----i~~s~~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~   78 (126)
                      ..+.+.+.++.+.+.+..+++.....    .......+.+++||+|.+.+++..++|=||+....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~hi~~t~d~~~~~iYvNG~l~~  162 (218)
T d1epwa1          98 SGWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIYINGKLES  162 (218)
T ss_dssp             EEEEEEEETTEEEEEEECTTCCEEEEEEECCSSCSSCSSTTSCEEEEEEECSSEEEEEETTEEEE
T ss_pred             cceEEEEeCCcceEEEEecCCcceeecccccccccccccCCcEEEEEEEECCCEEEEEECCEEEe
Confidence            34667788888887777554321111    11223468899999999999999999999998644

>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]

Probab=94.16  E-value=0.17  Score=34.40  Aligned_cols=62  Identities=10%  Similarity=0.008  Sum_probs=44.2

Q ss_pred             CCeEEEEEeCCEEEEEEEcCCceEEEE----EcCCCcccCCCCceEEEEEEec-eeEEEEecccccc
Q psy6121          17 SDYLNVAIKDGGVAINLKLAMGKLDMY----IRPNRLRFDDNQWHHLSIHRRI-QEGTGCGKEEEKK   78 (126)
Q Consensus        17 ~DFIaLeL~~G~L~l~~nlGsG~~~~~----i~~s~~~lnDgqWH~V~v~R~~-r~~sL~vd~~~~~   78 (126)
                      .-++.+.+.++.+.+.+..+++.....    .......+.+++||+|.++++. ..++|=||+....
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~Hva~t~d~~~~~~lYiNG~lv~  165 (207)
T d3btaa1          99 NSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLID  165 (207)
T ss_dssp             SCSCEEEEESSEEEEEEECTTCCEEEEEEECCSCCSSCSSTTSEEEEEEEECTTSEEEEEETTEEEE
T ss_pred             cceEEEEeeccceeeEEecCCcceeccccccceeeeeeecCCcEEEEEEEEcCCCcEEEEECCEEEE
Confidence            345778888998888887665432211    1122357999999999999986 4689999998765

>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Tetanus neurotoxin
species: Clostridium tetani [TaxId: 1513]

Probab=93.86  E-value=0.17  Score=35.43  Aligned_cols=62  Identities=13%  Similarity=0.127  Sum_probs=43.9

Q ss_pred             CCeEEEEEeCCEEEEEEEcCCceEEEE----EcCCCcccCCCCceEEEEEEec-eeEEEEecccccc
Q psy6121          17 SDYLNVAIKDGGVAINLKLAMGKLDMY----IRPNRLRFDDNQWHHLSIHRRI-QEGTGCGKEEEKK   78 (126)
Q Consensus        17 ~DFIaLeL~~G~L~l~~nlGsG~~~~~----i~~s~~~lnDgqWH~V~v~R~~-r~~sL~vd~~~~~   78 (126)
                      ...+.+.+.++.+.+.+..+++.....    .......+.+++||+|.+.++. ..++|=+|+....
T Consensus       125 ~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~W~hia~t~d~~~~~~lYinG~~~~  191 (247)
T d1a8da1         125 GSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMG  191 (247)
T ss_dssp             EEEEEEEEETTEEEEEEECTTSCEEEEEEECCSBTTSCSSSSSCEEEEEEECTTSEEEEEETTEEEE
T ss_pred             CccEEEEEeCCeEEEEEEecccCccccccceeccccccccCCcEEEEEEEEeCCCcEEEEECCEEEE
Confidence            346778888999888887665432111    1112356999999999999976 4788999997654

>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: C-reactive protein (CRP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.22  Score=34.25  Aligned_cols=57  Identities=2%  Similarity=-0.175  Sum_probs=35.8

Q ss_pred             CCCeEEEEEeCCEEEEEEEcCCceEEEEEcCCCcccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121          16 GSDYLNVAIKDGGVAINLKLAMGKLDMYIRPNRLRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK   78 (126)
Q Consensus        16 ~~DFIaLeL~~G~L~l~~nlGsG~~~~~i~~s~~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~   78 (126)
                      ..+.+.+...++.. +.+..+......     ...+.+++||+|.+..+..  .+.|-+|+....
T Consensus        59 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~W~Hvavt~d~~~g~~~lYinG~~~~  117 (206)
T d1b09a_          59 QDNEILIFWSKDIG-YSFTVGGSEILF-----EVPEVTVAPVHICTSWESASGIVEFWVDGKPRV  117 (206)
T ss_dssp             CTTSEEEEEETTTE-EEEEETTEEEEE-----ECCCCCCSCEEEEEEEETTTCEEEEEETTEECC
T ss_pred             CceeEEEEecCCcc-EEEEeccccEEe-----cCcccCCcEEEEEEEEeccCCeEEEEECCeEEe
Confidence            44556666555432 233334433211     2468899999999999865  578999987654

>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: Serum amyloid P component (SAP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.3  Score=33.66  Aligned_cols=30  Identities=3%  Similarity=-0.274  Sum_probs=24.8

Q ss_pred             cccCCCCceEEEEEEece--eEEEEecccccc
Q psy6121          49 LRFDDNQWHHLSIHRRIQ--EGTGCGKEEEKK   78 (126)
Q Consensus        49 ~~lnDgqWH~V~v~R~~r--~~sL~vd~~~~~   78 (126)
                      ..+++++||+|.+..+..  .+++=+|+..-.
T Consensus        84 ~~~~~~~W~Hv~~t~d~~~g~~~~YiNG~~~~  115 (204)
T d1saca_          84 VIEKFPAPVHICVSWESSSGIAEFWINGTPLV  115 (204)
T ss_dssp             CCCCSSCCEEEEEEEETTTCEEEEEETTEECC
T ss_pred             ccccCCceEEEEEEEecCCCcEEEEECCEEEe
Confidence            578999999999999865  688888987543

>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Hypothetical protein YesU
domain: Hypothetical protein YesU
species: Bacillus subtilis [TaxId: 1423]

Probab=83.62  E-value=2.7  Score=28.61  Aligned_cols=30  Identities=3%  Similarity=-0.306  Sum_probs=26.3

Q ss_pred             cccCCCCceEEEEEEeceeEEEEecccccc
Q psy6121          49 LRFDDNQWHHLSIHRRIQEGTGCGKEEEKK   78 (126)
Q Consensus        49 ~~lnDgqWH~V~v~R~~r~~sL~vd~~~~~   78 (126)
                      ..+.+|.||++.|.-.+..++..||+..-.
T Consensus       153 ~~~~~geWn~~~I~v~G~~i~~~lNG~~v~  182 (223)
T d1oq1a_         153 SPDDADSPYRMKLIKDKGYVHFSINGLPIL  182 (223)
T ss_dssp             CGGGCCSCEEEEEEEETTEEEEEETTEEEE
T ss_pred             ccccCCCcEEEEEEEECCEEEEEECCEEEE
Confidence            468899999999999999999999997543