Psyllid ID: psy6126

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKNMNANKGQYDTMKPPGYGKKYMKATVSTDDSP
cEEEEcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
cEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHcHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
mspfrrpstvrnATAVFIINLSVSDLMfccfnlplaaSTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITinryvmighptlypklYSSKFLAFMVACTWLFgfgalvptwlgvwgrfglepsigscsilpddyghspKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKnmnankgqydtmkppgygkkymkatvstddsp
mspfrrpstvrnaTAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMknmnankgqydtmkppgygkkymkatvstddsp
MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTamksramnmknmnankGQYDTMKPPGYGKKYMKATVSTDDSP
**********RNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTA*****************************************
MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIV*********************************************
*********VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKNMNANKGQYDTMKPPGYGKKYMKA********
MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRA************************************
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKNMNANKGQYDTMKPPGYGKKYMKATVSTDDSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query214 2.2.26 [Sep-21-2011]
Q9W534 670 G-protein coupled recepto no N/A 0.775 0.247 0.493 2e-46
Q29J90 675 G-protein coupled recepto no N/A 0.775 0.245 0.487 4e-46
Q9NDM2 392 Protein trapped in endode no N/A 0.873 0.477 0.393 1e-33
P48039350 Melatonin receptor type 1 yes N/A 0.789 0.482 0.302 6e-16
P49288346 Melatonin receptor type 1 yes N/A 0.817 0.505 0.295 2e-15
O15973 499 Rhodopsin, GQ-coupled OS= N/A N/A 0.845 0.362 0.29 2e-15
P49217353 Melatonin receptor type 1 N/A N/A 0.789 0.478 0.279 7e-15
P49285353 Melatonin receptor type 1 no N/A 0.803 0.487 0.291 8e-15
Q8CIM5 396 G-protein coupled recepto yes N/A 0.943 0.510 0.252 8e-15
Q2KI97 396 G-protein coupled recepto yes N/A 0.766 0.414 0.290 1e-14
>sp|Q9W534|MOODY_DROME G-protein coupled receptor moody OS=Drosophila melanogaster GN=moody PE=2 SV=2 Back     alignment and function desciption
 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 112/166 (67%)

Query: 10  VRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFT 69
           VRN  A FII+L ++DL+FC   LP     F Q  W HG +LC+L P ++YG + VSL  
Sbjct: 67  VRNVAAAFIISLCIADLLFCALVLPFQGLRFVQGTWRHGQVLCRLIPFIQYGNIGVSLLC 126

Query: 70  VLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIG 129
           +  ITINRYVMI H  LY ++Y   ++A M+A  WLF +G  +PT LG WGRFG +  + 
Sbjct: 127 IAMITINRYVMITHHGLYARIYKRHWIAVMIAACWLFSYGMQLPTLLGEWGRFGYDSRLQ 186

Query: 130 SCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMK 175
           +CSI+ DD+GHS K  LF+ AFVIPC+ I+ CYA+IF++V K+  +
Sbjct: 187 TCSIMTDDHGHSSKTTLFITAFVIPCLVIIACYAKIFWVVHKSEQR 232
Isoform A and isoform B are required in glia to regulate the acute sensitivity to cocaine and to continuously maintain the proper blood-brain barrier (BBB) function. A moody-mediated signaling pathway functions in glia to regulate nervous system insulation and drug-related behaviors. G-ialpha65A and G-oalpha47A, and the regulator of G protein signaling, loco, are required in the surface glia to achieve effective insulation. The components function by regulating the cortical actin and thereby stabilizing the extended morphology of the surface glia, which in turn is necessary for the formation of septate junctions of sufficient length to achieve proper sealing of the nerve cord.
Drosophila melanogaster (taxid: 7227)
>sp|Q29J90|MOODY_DROPS G-protein coupled receptor moody OS=Drosophila pseudoobscura pseudoobscura GN=moody PE=3 SV=2 Back     alignment and function description
>sp|Q9NDM2|GUTR1_DROME Protein trapped in endoderm-1 OS=Drosophila melanogaster GN=Tre1 PE=1 SV=1 Back     alignment and function description
>sp|P48039|MTR1A_HUMAN Melatonin receptor type 1A OS=Homo sapiens GN=MTNR1A PE=2 SV=1 Back     alignment and function description
>sp|P49288|MTR1C_CHICK Melatonin receptor type 1C OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|O15973|OPSD1_MIZYE Rhodopsin, GQ-coupled OS=Mizuhopecten yessoensis GN=SCOP1 PE=1 SV=1 Back     alignment and function description
>sp|P49217|MTR1A_PHOSU Melatonin receptor type 1A OS=Phodopus sungorus GN=MTNR1A PE=2 SV=2 Back     alignment and function description
>sp|P49285|MTR1A_CHICK Melatonin receptor type 1A OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q8CIM5|GPR84_MOUSE G-protein coupled receptor 84 OS=Mus musculus GN=Gpr84 PE=1 SV=1 Back     alignment and function description
>sp|Q2KI97|GPR84_BOVIN G-protein coupled receptor 84 OS=Bos taurus GN=GPR84 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
345479418 594 PREDICTED: G-protein coupled receptor mo 0.948 0.341 0.674 2e-75
328700257 484 PREDICTED: G-protein coupled receptor mo 0.971 0.429 0.661 3e-75
340719379 580 PREDICTED: G-protein coupled receptor mo 0.836 0.308 0.706 2e-72
350408436 583 PREDICTED: G-protein coupled receptor mo 0.864 0.317 0.686 3e-72
383848179 534 PREDICTED: G-protein coupled receptor mo 0.803 0.322 0.744 4e-72
357628596 380 hypothetical protein KGM_04869 [Danaus p 0.808 0.455 0.728 4e-69
307210121 554 Gustatory receptor trehalose 1 [Harpegna 0.817 0.315 0.697 5e-68
195447722 534 GK25184 [Drosophila willistoni] gi|19416 0.976 0.391 0.550 2e-67
321472386 455 putative neuropeptideG-protein-coupled r 0.799 0.375 0.713 8e-67
347966034 504 AGAP001498-PA [Anopheles gambiae str. PE 0.850 0.361 0.620 5e-66
>gi|345479418|ref|XP_001606666.2| PREDICTED: G-protein coupled receptor moody-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/203 (67%), Positives = 156/203 (76%)

Query: 6   RPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
           R   +RNATAVFI+NLS+SDLMFCCFNLPLA STFW  +W HG LLC+LFPLLRYGL+AV
Sbjct: 68  RTKKLRNATAVFIMNLSMSDLMFCCFNLPLATSTFWHGSWLHGPLLCRLFPLLRYGLVAV 127

Query: 66  SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
           SLFTVL ITINRYVMIGHP LYPKLY  K+L  MV  TW+ GFGAL+PTW   WGRFGL+
Sbjct: 128 SLFTVLAITINRYVMIGHPRLYPKLYKPKYLVLMVLATWIGGFGALIPTWFEQWGRFGLD 187

Query: 126 PSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKNMN 185
           P IGSCSILPD YG SPKEFLF++AF+ PCI+IVVCYARIFYIVRKTAMKSR  +     
Sbjct: 188 PVIGSCSILPDVYGRSPKEFLFILAFLAPCIAIVVCYARIFYIVRKTAMKSRRRDEATRQ 247

Query: 186 ANKGQYDTMKPPGYGKKYMKATV 208
                ++ M       K M+ + 
Sbjct: 248 LVHSNFELMGFEAKCSKNMEDSA 270

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328700257|ref|XP_003241197.1| PREDICTED: G-protein coupled receptor moody-like isoform 2 [Acyrthosiphon pisum] gi|328700259|ref|XP_001944702.2| PREDICTED: G-protein coupled receptor moody-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|340719379|ref|XP_003398132.1| PREDICTED: G-protein coupled receptor moody-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350408436|ref|XP_003488405.1| PREDICTED: G-protein coupled receptor moody-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383848179|ref|XP_003699729.1| PREDICTED: G-protein coupled receptor moody-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|357628596|gb|EHJ77869.1| hypothetical protein KGM_04869 [Danaus plexippus] Back     alignment and taxonomy information
>gi|307210121|gb|EFN86818.1| Gustatory receptor trehalose 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|195447722|ref|XP_002071341.1| GK25184 [Drosophila willistoni] gi|194167426|gb|EDW82327.1| GK25184 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|321472386|gb|EFX83356.1| putative neuropeptideG-protein-coupled receptor [Daphnia pulex] Back     alignment and taxonomy information
>gi|347966034|ref|XP_321623.2| AGAP001498-PA [Anopheles gambiae str. PEST] gi|333470240|gb|EAA01815.3| AGAP001498-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
FB|FBgn0025632 572 CG4313 [Drosophila melanogaste 0.775 0.290 0.668 1.3e-59
FB|FBgn0025631 670 moody "moody" [Drosophila mela 0.761 0.243 0.503 3.5e-44
UNIPROTKB|Q29J90 675 moody "G-protein coupled recep 0.761 0.241 0.496 1.2e-43
FB|FBgn0046687 392 Tre1 "Trapped in endoderm 1" [ 0.766 0.418 0.424 3.5e-36
UNIPROTKB|P48039350 MTNR1A "Melatonin receptor typ 0.747 0.457 0.327 6.5e-21
ZFIN|ZDB-GENE-990415-155350 mtnr1aa "melatonin receptor 1A 0.747 0.457 0.309 2.9e-18
UNIPROTKB|P49288346 P49288 "Melatonin receptor typ 0.747 0.462 0.321 3e-18
UNIPROTKB|P49285353 P49285 "Melatonin receptor typ 0.747 0.453 0.327 1e-17
ZFIN|ZDB-GENE-990415-158361 mtnr1c "melatonin receptor 1C" 0.747 0.443 0.327 1.9e-17
UNIPROTKB|G3MYN7366 MTNR1A "Melatonin receptor typ 0.747 0.437 0.339 2.1e-17
FB|FBgn0025632 CG4313 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 111/166 (66%), Positives = 134/166 (80%)

Query:     6 RPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
             R    RN+TA+FIINLS SDL+F CFNLPLAASTF +RAWTH  LLC+LFP+LRYGLLAV
Sbjct:   135 RGRQTRNSTAIFIINLSCSDLLFGCFNLPLAASTFKERAWTHSDLLCRLFPMLRYGLLAV 194

Query:    66 SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
             SL +V  ITINRY++I HP  YP++Y  ++LA MVA TW+  F  ++PTW GVWG FGL+
Sbjct:   195 SLLSVSLITINRYIIIAHPRQYPRIYQRRYLALMVAGTWITTFSIMIPTWRGVWGIFGLD 254

Query:   126 PSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRK 171
              SIGSCSI+ D YG SPKEFLF+ AF++PCI IV+CYARIF +VRK
Sbjct:   255 VSIGSCSIMHDRYGRSPKEFLFIAAFMVPCICIVICYARIFLLVRK 300
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISS
GO:0004930 "G-protein coupled receptor activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
FB|FBgn0025631 moody "moody" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q29J90 moody "G-protein coupled receptor moody" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
FB|FBgn0046687 Tre1 "Trapped in endoderm 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P48039 MTNR1A "Melatonin receptor type 1A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-155 mtnr1aa "melatonin receptor 1A a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P49288 P49288 "Melatonin receptor type 1C" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P49285 P49285 "Melatonin receptor type 1A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-158 mtnr1c "melatonin receptor 1C" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3MYN7 MTNR1A "Melatonin receptor type 1A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 9e-30
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 2e-07
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  110 bits (276), Expect = 9e-30
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 8/186 (4%)

Query: 11  RNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTV 70
           R  T +F++NL+V+DL+F     P A        W  G  LC+L   L       S+  +
Sbjct: 10  RTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILLL 69

Query: 71  LGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGS 130
             I+I+RY+ I HP  Y ++ + +    ++   W+      +P  L  W R   E ++ +
Sbjct: 70  TAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTT 129

Query: 131 CSILPDDYGHSPKE-----FLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKNMN 185
           C I   D+     +        L+ FV+P + I+VCY  I   +RK A    +      +
Sbjct: 130 CLI---DFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKRS 186

Query: 186 ANKGQY 191
           ++K + 
Sbjct: 187 SSKERK 192

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 214
KOG4220|consensus 503 99.97
KOG4219|consensus 423 99.96
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.95
PHA03234338 DNA packaging protein UL33; Provisional 99.94
PHA02834323 chemokine receptor-like protein; Provisional 99.93
PHA02638417 CC chemokine receptor-like protein; Provisional 99.93
PHA03235 409 DNA packaging protein UL33; Provisional 99.91
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.91
KOG2087|consensus363 99.69
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.67
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.65
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.37
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.35
PF11710201 Git3: G protein-coupled glucose receptor regulatin 99.33
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.87
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 98.85
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 98.65
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.6
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 98.24
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.92
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 97.78
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.66
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 97.55
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 97.36
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 97.35
KOG4193|consensus610 97.04
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 96.74
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 96.63
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 96.6
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 96.18
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 95.71
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 95.41
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 95.33
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 94.25
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 94.1
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 91.85
KOG4564|consensus473 91.67
PF1508674 UPF0542: Uncharacterised protein family UPF0542 90.16
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 88.8
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 87.48
>KOG4220|consensus Back     alignment and domain information 
Probab=99.97  E-value=6.3e-32  Score=204.75  Aligned_cols=180  Identities=22%  Similarity=0.355  Sum_probs=155.4

Q ss_pred             cceeccCCCCCchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHhheee
Q psy6126           2 SPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMI   81 (214)
Q Consensus         2 ~~v~~~~~~~~~~~~~i~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI   81 (214)
                      +.+.-.|++++..|+|+.+||++|++.|.+.+|++..+.+-+.|.+|...|.++..+.++...+|+++++.|++|||++|
T Consensus        53 iSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsV  132 (503)
T KOG4220|consen   53 ISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSV  132 (503)
T ss_pred             EEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceee
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCcCccccccchhhhhHHHHHHHHHHhhhhhhhcccccc-ccCccceeeecCCCCCCchhHHHHHHHHHHHHHHHHH
Q psy6126          82 GHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFG-LEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVV  160 (214)
Q Consensus        82 ~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  160 (214)
                      .+|+.|+...|.+++..+|+..|++++++..|.++.+....+ .....+.|..+... +....+-..+..|.+|+.+|.+
T Consensus       133 TrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFls-np~iTfGTAiAAFYlPVtiM~~  211 (503)
T KOG4220|consen  133 TRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLS-NPAITFGTAIAAFYLPVTIMTI  211 (503)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeec-CceeehhHHHHHHHhhHHHHHH
Confidence            999999999999999999999999999999997765333222 23445689876554 4455555677889999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhc
Q psy6126         161 CYARIFYIVRKTAMKSRAMNMK  182 (214)
Q Consensus       161 ~y~~i~~~l~~~~~~~~~~~~~  182 (214)
                      +|++|++..+++.+........
T Consensus       212 LY~rIyret~kR~k~~~~lq~s  233 (503)
T KOG4220|consen  212 LYWRIYRETRKRQKELAKLQAS  233 (503)
T ss_pred             HHHHHHHHHHHHHHhhhhcccc
Confidence            9999999999988766554433

>KOG4219|consensus Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF15086 UPF0542: Uncharacterised protein family UPF0542 Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 2e-10
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 2e-09
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-09
2z73_A 448 Crystal Structure Of Squid Rhodopsin Length = 448 3e-09
2ziy_A 372 Crystal Structure Of Squid Rhodopsin Length = 372 3e-09
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 2e-08
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 6e-07
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 1e-06
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 2e-06
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-06
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 2e-06
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 2e-06
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 3e-06
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 3e-06
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 3e-06
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 3e-06
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 1e-05
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 1e-05
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 2e-05
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 2e-05
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 4e-05
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 4e-05
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 4e-05
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 5e-05
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 5e-05
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 5e-05
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 5e-05
2x72_A349 Crystal Structure Of The Constitutively Active E113 5e-05
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 6e-05
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 1e-04
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-04
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-04
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure 
Iteration: 1

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 6/162 (3%)
Query: 6   RPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAV 65
           R + ++ AT ++I NL+++D +     +P  ++ +   +W  G +LC++   + Y  +  
Sbjct: 49  RYTKMKTATNIYIFNLALADALVTT-TMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFT 107
Query: 66  SLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLE 125
           S+FT+  ++++RY+ + HP       +      +  C WL      +   +    +   +
Sbjct: 108 SIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVRED 167
Query: 126 PSIGSCSI-LPDD----YGHSPKEFLFLVAFVIPCISIVVCY 162
             +  CS+  PDD    +    K  +F+ AFVIP + I+VCY
Sbjct: 168 VDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCY 209
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-27
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 3e-25
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 4e-23
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 6e-22
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 2e-21
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 3e-21
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 4e-21
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 2e-20
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 4e-20
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 4e-20
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-18
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 2e-18
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-17
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 2e-17
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 3e-17
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score =  106 bits (266), Expect = 3e-27
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 5/183 (2%)

Query: 4   FRRPSTVRNATAVFIINLSVSDLMFCCFN-LPLAASTFWQRAWTHGHLLCQLFPLLRYGL 62
           F +  +++    +FIINL+ SD  F   N  PL   + + + W  G   C+++  +    
Sbjct: 59  FTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIF 118

Query: 63  LAVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRF 122
             +S+ T+  I+I+RY +IG P    K  S +    M+   WL+     +    G WG +
Sbjct: 119 GFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG-WGAY 177

Query: 123 GLEPSIGSCSI---LPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAM 179
            LE  + +CS      D    S    +F++ F  P + I  CY  I   V     +  AM
Sbjct: 178 TLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAM 237

Query: 180 NMK 182
             +
Sbjct: 238 AKR 240
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.96
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.96
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.96
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.96
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.95
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.95
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.95
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.95
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.95
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.95
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.95
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.95
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.95
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.94
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.94
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.94
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.93
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.93
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.9
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.96  E-value=2.4e-30  Score=211.52  Aligned_cols=178  Identities=17%  Similarity=0.258  Sum_probs=141.0

Q ss_pred             cceeccCCC---CCchhhHHHHHHHHHHHHHHhhhhhhhhhhh--cccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy6126           2 SPFRRPSTV---RNATAVFIINLSVSDLMFCCFNLPLAASTFW--QRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITIN   76 (214)
Q Consensus         2 ~~v~~~~~~---~~~~~~~i~~Lav~Dll~~~~~~~~~~~~~~--~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~d   76 (214)
                      +++.++|++   ++++|+|++|||++|++++++.+|+.+...+  .+.|.+|+..|++..++...+..+|++++++||+|
T Consensus        55 ~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~d  134 (510)
T 4grv_A           55 FTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVA  134 (510)
T ss_dssp             HHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555544   4788999999999999999999999887654  35699999999999999999999999999999999


Q ss_pred             hheeeeccCCcCccccccchhhhhHHHHHHHHHHhhhhhhhccccccc----cCccceeeecCCCC-CCchhHHHHHHHH
Q psy6126          77 RYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGL----EPSIGSCSILPDDY-GHSPKEFLFLVAF  151 (214)
Q Consensus        77 Ry~aI~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~-~~~~~~~~~~~~~  151 (214)
                      ||+||++|++|++..|++++..+++++|++++++++|+++........    ......|....+.. ...+..+.+++.+
T Consensus       135 Ry~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~f  214 (510)
T 4grv_A          135 RYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSF  214 (510)
T ss_dssp             HHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCHHHHHHHHHHHHHHHT
T ss_pred             heEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccccccchhhhhhhhhhhHHH
Confidence            999999999999999999999999999999999999988753222111    11223565443321 1233445567789


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy6126         152 VIPCISIVVCYARIFYIVRKTAMKSRAM  179 (214)
Q Consensus       152 ~~p~~~~~~~y~~i~~~l~~~~~~~~~~  179 (214)
                      ++|+++|+++|++|++.++++.+.....
T Consensus       215 ~iP~~ii~~~Y~~I~~~l~~~~~~~~~~  242 (510)
T 4grv_A          215 LFPMLVISILNTVIANKLTVMVNIFEML  242 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCTHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999999999999999876654443
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 214
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 5e-07
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.9 bits (110), Expect = 5e-07
 Identities = 23/182 (12%), Positives = 53/182 (29%)

Query: 4   FRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLL 63
             +   +R      ++NL+V+DL            T     +  G   C L         
Sbjct: 62  TVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 121

Query: 64  AVSLFTVLGITINRYVMIGHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFG 123
            ++L++++ + I RYV++  P    +   +  +  +     +    A  P          
Sbjct: 122 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 181

Query: 124 LEPSIGSCSILPDDYGHSPKEFLFLVAFVIPCISIVVCYARIFYIVRKTAMKSRAMNMKN 183
                            + + F+  +  V   I ++V +     +V      +       
Sbjct: 182 GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESA 241

Query: 184 MN 185
             
Sbjct: 242 TT 243

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.88
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=3.5e-24  Score=164.82  Aligned_cols=171  Identities=23%  Similarity=0.403  Sum_probs=135.8

Q ss_pred             cceeccCCCCCchhhHHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHhheee
Q psy6126           2 SPFRRPSTVRNATAVFIINLSVSDLMFCCFNLPLAASTFWQRAWTHGHLLCQLFPLLRYGLLAVSLFTVLGITINRYVMI   81 (214)
Q Consensus         2 ~~v~~~~~~~~~~~~~i~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI   81 (214)
                      +++.++|++|++.|+++.|||++|++.++...|..+.....+.|..++..|+...++...+..++.++++++++|||++|
T Consensus        60 ~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i  139 (348)
T d1u19a_          60 YVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVV  139 (348)
T ss_dssp             HHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhccccceeeecchhhhhhcccceee
Confidence            45677889999999999999999999999889988888878888899999999999999999999999999999999999


Q ss_pred             eccCCcCccccccchhhhhHHHHHHHHHHhhhhhhhccccccccCccceeeecCCCC-----CCchhHHHHHHHHHHHHH
Q psy6126          82 GHPTLYPKLYSSKFLAFMVACTWLFGFGALVPTWLGVWGRFGLEPSIGSCSILPDDY-----GHSPKEFLFLVAFVIPCI  156 (214)
Q Consensus        82 ~~P~~~~~~~t~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~-----~~~~~~~~~~~~~~~p~~  156 (214)
                      ++|++|+.. ++++....+...|.++.+...|+.+. ......+.....|.......     ...+..+...+.+++|++
T Consensus       140 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~  217 (348)
T d1u19a_         140 CKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVG-WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLI  217 (348)
T ss_dssp             TCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTT-SSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHH
T ss_pred             ecccccccc-ccccccccceeeehhhhheecccccc-cceeccCCcccccccccccccccccchhhHHHHHHHHHHHHHH
Confidence            999998775 66777778888899998888887765 33333444444554332211     122333445666789999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q psy6126         157 SIVVCYARIFYIVRKTAM  174 (214)
Q Consensus       157 ~~~~~y~~i~~~l~~~~~  174 (214)
                      +++++|.++.+.+|++.+
T Consensus       218 i~~~~y~~i~~~~~~~~~  235 (348)
T d1u19a_         218 VIFFCYGQLVFTVKEAAA  235 (348)
T ss_dssp             HHHHHHTTTTTSSCSCCC
T ss_pred             HHHHHHHHHHhhhccccc
Confidence            999999999887776544