Psyllid ID: psy6159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVEDKIRQERESNPRPSAYKADAQPTKLTIGCRLANFILTLPQ
Secondary Structure (PSIPRED)
ccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEcHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEHHHHHHHHHHHcccccccccccccccEEEEEHHHHHHHHcccc
Coil and Loop (DISEMBL)
MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIynegrldrwigerqpfreqtLSVEDKIRQEresnprpsaykadaqptkltigcRLANFILTLPQ
Flexible Loop (DISEMBL)
MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGerqpfreqtlsvedkirqeresnprpsaykadaqptkltigCRLANFILTLPQ
Low Complexity Region (SEG)
MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVEDKIRQERESNPRPSAYKADAQPTKLTIGCRLANFILTLPQ
Disordered region (IsUnstruct)
****KHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGE***********************************KLTIGCRLANFILT***
Disordered Region (DISOPRED)
MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEG***************************************AQPTKLTIGCRLANFILTLP*
Disordered Region (DISEMBL)
MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVEDKI****************AQPTKLTIGCRLANFILTLPQ
Disordered Region (DISPRO)
*AVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVEDKIRQERESNPRPSAYKADAQPTKLTIGCRLANFILTLPQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVEDKIRQERESNPRPSAYKADAQPTKLTIGCRLANFILTLPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q86BJ3	514	Heparan sulfate 2-O-sulfo	no	N/A	0.405	0.079	0.536	2e-05

>sp|Q86BJ3|PIPE_DROME Heparan sulfate 2-O-sulfotransferase pipe OS=Drosophila melanogaster GN=pip PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 2   AVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGR 42
            VE  YAVVG  ED N+TL+V+E YIPR+F +A   Y  G+
Sbjct: 401 TVETEYAVVGTWEDTNITLSVLEAYIPRYFRNAKVAYYLGK 441

Sulfotransferase involved in dorsoventral axis patterning in early embryos. Required for the specific ventral activation of a series of proteases acting in the perivitelline space between the embryonic membrane and the eggshell. Probably acts by mediating the sulfation of some glycoprotein or glycosaminoglycan stably deposited in the egg, whose ventrally localized modification leads to spatially restricted activation of the protease cascade.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 8EC: .EC: 2EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
383860488	408	PREDICTED: heparan sulfate 2-O-sulfotran	0.376	0.093	0.763	2e-09
340716106	402	PREDICTED: LOW QUALITY PROTEIN: heparan	0.376	0.094	0.763	2e-09
350421797	398	PREDICTED: heparan sulfate 2-O-sulfotran	0.376	0.095	0.763	2e-09
380012956	400	PREDICTED: heparan sulfate 2-O-sulfotran	0.376	0.095	0.763	3e-09
328777404	400	PREDICTED: heparan sulfate 2-O-sulfotran	0.376	0.095	0.763	3e-09
307209570	310	Heparan sulfate 2-O-sulfotransferase pip	0.376	0.122	0.736	5e-09
332024386	333	Heparan sulfate 2-O-sulfotransferase pip	0.376	0.114	0.710	6e-09
307183100	360	Heparan sulfate 2-O-sulfotransferase pip	0.376	0.105	0.710	1e-08
242018996	296	Heparan sulfate 2-O-sulfotransferase pip	0.435	0.148	0.644	1e-08
322799531	326	hypothetical protein SINV_12448 [Solenop	0.376	0.116	0.710	2e-08

>gi|383860488|ref|XP_003705721.1| PREDICTED: heparan sulfate 2-O-sulfotransferase pipe-like [Megachile rotundata]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           MAVEKHYAVVG+LED+N TLTV+ENYIPRFF  A+ +Y
Sbjct: 305 MAVEKHYAVVGVLEDVNATLTVLENYIPRFFQGATDVY 342

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716106|ref|XP_003396543.1| PREDICTED: LOW QUALITY PROTEIN: heparan sulfate 2-O-sulfotransferase pipe-like [Bombus terrestris]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           MAVEKHYAVVG+LED+N TLTV+ENYIPRFF  A+ +Y
Sbjct: 299 MAVEKHYAVVGVLEDVNTTLTVLENYIPRFFRGATDVY 336

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421797|ref|XP_003492960.1| PREDICTED: heparan sulfate 2-O-sulfotransferase pipe-like [Bombus impatiens]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           MAVEKHYAVVG+LED+N TLTV+ENYIPRFF  A+ +Y
Sbjct: 295 MAVEKHYAVVGVLEDVNTTLTVLENYIPRFFRGATDVY 332

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012956|ref|XP_003690538.1| PREDICTED: heparan sulfate 2-O-sulfotransferase pipe-like [Apis florea]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           MAVEKHYAVVG+LED+N TLTV+ENYIPRFF  A+ +Y
Sbjct: 297 MAVEKHYAVVGVLEDVNSTLTVLENYIPRFFRGATDVY 334

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777404|ref|XP_395133.3| PREDICTED: heparan sulfate 2-O-sulfotransferase pipe-like [Apis mellifera]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/38 (76%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           MAVEKHYAVVG+LED+N TLTV+ENYIPRFF  A+ +Y
Sbjct: 297 MAVEKHYAVVGVLEDVNSTLTVLENYIPRFFRGATDVY 334

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209570|gb|EFN86485.1| Heparan sulfate 2-O-sulfotransferase pipe [Harpegnathos saltator]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           +AVEKHYAVVG+LED+N TLTV+ENYIPRFF  A+ +Y
Sbjct: 207 LAVEKHYAVVGVLEDMNTTLTVLENYIPRFFQGATDVY 244

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024386|gb|EGI64584.1| Heparan sulfate 2-O-sulfotransferase pipe [Acromyrmex echinatior]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           +AVEKHYAVVG+LED+N TLTV+ENY+PRFF  A+ +Y
Sbjct: 235 LAVEKHYAVVGVLEDINTTLTVLENYVPRFFQGATDVY 272

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183100|gb|EFN70017.1| Heparan sulfate 2-O-sulfotransferase pipe [Camponotus floridanus]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           +AVEKHYAVVG+LED+N  LTV+ENYIPRFF  A+ +Y
Sbjct: 264 LAVEKHYAVVGVLEDMNTALTVLENYIPRFFQGATNVY 301

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018996|ref|XP_002429954.1| Heparan sulfate 2-O-sulfotransferase pipe, putative [Pediculus humanus corporis] gi|212515002|gb|EEB17216.1| Heparan sulfate 2-O-sulfotransferase pipe, putative [Pediculus humanus corporis]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 38/45 (84%), Gaps = 1/45 (2%)

Query: 2   AVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRW 46
           AVE+HYAVVG+LEDLN T TV+ENYIPRFF  A+Q++ +  +DR+
Sbjct: 201 AVEQHYAVVGVLEDLNSTFTVLENYIPRFFKGAAQVFKD-EVDRF 244

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799531|gb|EFZ20839.1| hypothetical protein SINV_12448 [Solenopsis invicta]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 34/38 (89%)

Query: 1   MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIY 38
           +AVEKHYAVVG+LED+N TLTV+ENYIP+FF  A+ +Y
Sbjct: 230 LAVEKHYAVVGVLEDINTTLTVLENYIPQFFRGATDVY 267

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0003089	514	pip "pipe" [Drosophila melanog	0.415	0.081	0.558	8.4e-06

FB|FBgn0003089 pip "pipe" [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query:     3 VEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDR 45
             VE  YAVVG  ED N+TL+V+E YIPR+F +A   Y  G+ DR
Sbjct:   402 VETEYAVVGTWEDTNITLSVLEAYIPRYFRNAKVAYYLGK-DR 443


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 22  0.39    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  113 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.92u 0.09s 12.01t   Elapsed:  00:00:21
  Total cpu time:  11.92u 0.09s 12.01t   Elapsed:  00:00:21
  Start:  Thu Aug 15 14:19:29 2013   End:  Thu Aug 15 14:19:50 2013

GO:0007313 "maternal specification of dorsal/ventral axis, oocyte, soma encoded" evidence=TAS

GO:0016485 "protein processing" evidence=IGI

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0004394 "heparan sulfate 2-O-sulfotransferase activity" evidence=ISS;NAS

GO:0009950 "dorsal/ventral axis specification" evidence=IGI;IMP;TAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005694 "chromosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0048477 "oogenesis" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008146 "sulfotransferase activity" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0034483 "heparan sulfate sulfotransferase activity" evidence=IDA

GO:0034481 "chondroitin sulfotransferase activity" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG3922|consensus	361		99.71
PF03567	253	Sulfotransfer_2: Sulfotransferase family; InterPro	91.99

>KOG3922|consensus

Probab=99.71  E-value=2.5e-18  Score=141.14  Aligned_cols=75  Identities=23%  Similarity=0.391  Sum_probs=58.8

Q ss_pred             CcccceeeEEeeehhhhHHHHHHHHhhchhhhhHHHHHhcc-cccccccccccccCCCCCCCHHHHHHHHhC--CCcccc
Q psy6159           1 MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEG-RLDRWIGERQPFREQTLSVEDKIRQERESN--PRPSAY   77 (101)
Q Consensus         1 ~NVe~~Y~vVGilEeln~tL~VLE~~lPrfFkGA~~~Y~~~-~~~~~~~tkn~~Kp~~~~~Seev~~~lr~n--~t~E~~   77 (101)
                      .||+++|++|||+|||+++|.+||+++||||+||+++|.+. +.++.+ +++++||    ||+++.++++++  +++|..
T Consensus       246 ~nv~e~y~LVGvtEel~d~l~LLE~~lPrfFkGv~~iY~~~~~~~hlr-~t~~k~p----Ps~etvk~i~r~~~~~mE~e  320 (361)
T KOG3922|consen  246 FNVEEEYLLVGVTEELEDFLSLLERYLPRFFKGVREIYATSAKKSHLR-VTNKKKP----PSSETVKDIQRRMIYKMENE  320 (361)
T ss_pred             HHHhhhheeeeeHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhcee-eecccCC----CCHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999964 444333 3345565    777777777665  566655


Q ss_pred             ccc
Q psy6159          78 KAD   80 (101)
Q Consensus        78 ~~~   80 (101)
                      -||
T Consensus       321 fY~  323 (361)
T KOG3922|consen  321 FYD  323 (361)
T ss_pred             HHH
Confidence            554

>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids

Probab=91.99  E-value=0.18  Score=35.87  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=31.3

Q ss_pred             cceeeEEeeehhhhHHHHHHHHhhchhhhhHHHHHhc
Q psy6159           4 EKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNE   40 (101)
Q Consensus         4 e~~Y~vVGilEeln~tL~VLE~~lPrfFkGA~~~Y~~   40 (101)
                      ..+|-+||.+|++++.+..|...+..++.+....+..
T Consensus       167 ~~~~d~Vg~~E~~~~~~~~l~~~~~~~~~~~~~~~~~  203 (253)
T PF03567_consen  167 LRDYDFVGRLENFDEDLRRLLRLLGLFFENGPPFFNL  203 (253)
T ss_dssp             HHTEEEEEEGGGHHHHHHHHHHH-HHHHTTHHHHHHT
T ss_pred             ccccceeeecccHHHHHHHHHHhhhhhhhcCccchhc
Confidence            4579999999999999999999999988888877443

These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3f5f_A	658	Maltose-binding periplasmic protein, heparan sulfa	3e-14

>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} Length = 658

 Score = 65.8 bits (160), Expect = 3e-14
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 3   VEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVED 62
           +   Y +VG+ E+L   + ++E  +PRFF  A+++Y  G+       R+   ++  +   
Sbjct: 546 LINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRTGKKSH---LRKTTEKKLPTAAT 602

Query: 63  KIRQERESN 71
             + ++   
Sbjct: 603 IAKLQQSEI 611

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
3f5f_A	658	Maltose-binding periplasmic protein, heparan sulfa	99.39

>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}

Probab=99.39  E-value=7.7e-14  Score=114.97  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             CcccceeeEEeeehhhhHHHHHHHHhhchhhhhHHHHHhcccccccccccccccCCCCCCCHHHHHHHHhC--CCccccc
Q psy6159           1 MAVEKHYAVVGLLEDLNVTLTVMENYIPRFFAHASQIYNEGRLDRWIGERQPFREQTLSVEDKIRQERESN--PRPSAYK   78 (101)
Q Consensus         1 ~NVe~~Y~vVGilEeln~tL~VLE~~lPrfFkGA~~~Y~~~~~~~~~~tkn~~Kp~~~~~Seev~~~lr~n--~t~E~~~   78 (101)
                      +||+++|+|||+||++++||.+||+++|+||+||.++|.....+..+.++ . +.   +++++.++.++++  ...+.-=
T Consensus       544 ~nl~~~~~~vG~~E~~~~sl~lle~~~~~~f~~~~~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~D~~l  618 (658)
T 3f5f_A          544 YNLINEYFLVGVTEELEDFIMLLEAALPRFFRGATELYRTGKKSHLRKTT-E-KK---LPTAATIAKLQQSEIWKMENEF  618 (658)
T ss_dssp             HHHHHTEEEEEEGGGHHHHHHHHHHHCHHHHTTHHHHHHTCSTTSCSCBS-C-CC---CCCHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHhhhheeehHHhhHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHhhh-c-CC---CCCHHHHHHHHhChHHHHHHHH
Confidence            47899999999999999999999999999999999999887655444433 2 34   5899999999877  3333322


Q ss_pred             cc-----cCccceeeeeeeehhhccCCC
Q psy6159          79 AD-----AQPTKLTIGCRLANFILTLPQ  101 (101)
Q Consensus        79 ~~-----~~~~~~~~~~~~~~~~~~~~~  101 (101)
                      ||     ++=-...+|-.-.+++-.+||
T Consensus       619 Y~~a~~~f~~~~~~~~~~~~~~~~~~~~  646 (658)
T 3f5f_A          619 YEFALEQFQFVRAHAVREKDGELYILAQ  646 (658)
T ss_dssp             HHHHHHHHHHHHHTTEEEETTEEEECCC
T ss_pred             HHHHHHHHHHHHHhhccCCCcccccchH
Confidence            22     222233445555555555554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00