Psyllid ID: psy6189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MSLQRLFQRNCRLSFLARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHEEEccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHccccccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccHHHHcHHHHHEEEcccccccEEEEEEcccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccHHHccccccccEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccHcccccEEEEEEcccEccEEEEEEEEcccccEEEEccccHHHHcccHHHHHHHHccEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHHccccccHHHHccccEccc
Coil and Loop (DISEMBL)
MSLQRLFQRNCRLSFLarfssktpnppdkpnepselaketanipetphhdmfdrtKVSKAMQAYLKRAEDYtnfmegekhsFEVGRRHLANMmgrdvetfTQKDIDEAIAYLmpsglyskkarpymkhpeevfppkkdaefdnlgrpyhflfytarfssktpnppdkpnepselaketanipetphhdmfdrtKVSKAMQAYLKRAEDYTsfmegekhsYEVGRRHLANMMGRDVETFTQKDIDEAIAYLmpsglyskkarpymkhpeevfppkkdaefdnlgrpyhflfytgkpnlyELFHNANVLIRKLnkmededlrnpkqtqaSEASRELYLTNTEWMSQEALERitvepitkpeYQQFVAVMTRLVNHKYAYLHEEFIfkyrqpkviktmnfdpeepqagedgvkfvttkdcprkcaradvtvyqpgtgkitinekhyfdyfpdendrqqLMFPLIFTDMLNKVDIVASvregghsgqagAIRWGISwglrnfvePEMRERMRLAGLLTRDFRrkerkkpgqararkkftwkkr
Flexible Loop (DISEMBL)
MSLQRLFQRNCRLSflarfssktpnppdkpnepsELAKEtanipetphhdmfdrtKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFSSKTPNPPDKPNEPSELAKEtanipetphhdmfdrtKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLnkmededlrnpkqtqaseasrELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDpeepqagedgvkfvttkdcprkcaradvtvyqpgtgkitinEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGghsgqagairwgisWGLRNFVEPEMRERMRlaglltrdfrrkerkkpgqararkkftwkkr
Low Complexity Region (SEG)
MSLQRLFQRNCRLSFLARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR
Disordered region (IsUnstruct)
*********NCRLSFL***********************************************YLKRAEDYTNFM*****SFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYS*********************FDNLGRPYHFLFYTARF**************************************************************YEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYS********************EFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL**********************LYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNF**********GVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLL**************************
Disordered Region (DISOPRED)
***QRLFQRNCRLSFLARFSSKTPNPPDKP*E******************************AYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFSSKTPNPPDKP***************************SKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKM**********************TNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFK***********************VKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWK*R
Disordered Region (DISEMBL)
MSLQRLFQRNCRLSFLARFS******************ETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFS******************ETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDE************ASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRR********************
Disordered Region (DISPRO)
*SLQRLFQRNCRLSFLARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKK*GQARA*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLQRLFQRNCRLSFLARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFSSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	539	2.2.26 [Sep-21-2011]
Q58DQ5	396	28S ribosomal protein S9,	yes	N/A	0.621	0.845	0.448	4e-74
Q9D7N3	390	28S ribosomal protein S9,	yes	N/A	0.632	0.874	0.431	8e-73
P82933	396	28S ribosomal protein S9,	yes	N/A	0.610	0.830	0.428	6e-72
P34388	392	Probable 40S ribosomal pr	yes	N/A	0.630	0.867	0.306	2e-42
Q6G3I7	161	30S ribosomal protein S9	yes	N/A	0.220	0.739	0.479	7e-20
C6C1K0	130	30S ribosomal protein S9	yes	N/A	0.220	0.915	0.487	1e-19
Q38UV5	130	30S ribosomal protein S9	yes	N/A	0.200	0.830	0.513	1e-19
A9IVX6	161	30S ribosomal protein S9	yes	N/A	0.220	0.739	0.487	2e-19
Q757I0	279	37S ribosomal protein S9,	yes	N/A	0.419	0.810	0.314	5e-19
Q6BIJ5	323	37S ribosomal protein S9,	yes	N/A	0.419	0.699	0.295	5e-19

>sp|Q58DQ5|RT09_BOVIN 28S ribosomal protein S9, mitochondrial OS=Bos taurus GN=MRPS9 PE=1 SV=3

 Score =  279 bits (713), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 152/339 (44%), Positives = 204/339 (60%), Gaps = 4/339 (1%)

Query: 201 AYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKA 260
           A L+R      F++ +   + +G+RHLANMMG D ETFTQ+D+D AI YL PSGL+ K+A
Sbjct: 62  AALRRESYTVDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDVDRAITYLFPSGLFEKRA 121

Query: 261 RPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLR 320
           RP MKHPEE+FP ++  ++   GRP+HFLFYTGK + Y L H A   +  L+  E +D  
Sbjct: 122 RPIMKHPEEIFPKQRAVQWGEDGRPFHFLFYTGKQSYYSLMHEAYGKV--LHAEERQDQL 179

Query: 321 NPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHE 380
             K    SE S+   L  + W+ +E LE + VE ++  +Y QF+ ++ RL         E
Sbjct: 180 RAKGL-FSEKSKSKDLIGSRWLIKEELEEMLVEKLSDQDYAQFIRLLERLSALPCDAAEE 238

Query: 381 EFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINE 440
           EF+ ++R+   +++     E  Q  E G+ F +T    RK A A+  VY  G+GKI IN 
Sbjct: 239 EFVGRFRRTVTVQSKKHLIEPLQYDEQGMAF-STGQGKRKTANAEAVVYGHGSGKIEING 297

Query: 441 KHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVE 500
             Y  YFP   DR+QLMFP  F D L K D+  +V  GG S QAGAIR  +S  L +F+ 
Sbjct: 298 VDYLLYFPVTQDREQLMFPFHFLDRLGKHDVTCTVSGGGRSSQAGAIRLAMSRALCSFIT 357

Query: 501 PEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
            +  E MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct: 358 EDEVEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR 396

Bos taurus (taxid: 9913)

>sp|Q9D7N3|RT09_MOUSE 28S ribosomal protein S9, mitochondrial OS=Mus musculus GN=Mrps9 PE=1 SV=3

 Score =  275 bits (702), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 152/352 (43%), Positives = 209/352 (59%), Gaps = 11/352 (3%)

Query: 189 MFDRTKVSKAMQAYLKRAEDYT-SFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAI 247
           +   T V+        R E YT  F++ +   + +G+RHLANMMG D ETF ++DID AI
Sbjct: 49  LIHTTVVTTKKNVQASRQESYTEDFIKKQIEEFNIGKRHLANMMGEDPETFAEEDIDRAI 108

Query: 248 AYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVL 307
           AYL PSGL+ K+ARP MKHPE +FP ++  ++   GRP+HFLFYTGK + Y L H+    
Sbjct: 109 AYLFPSGLFEKRARPMMKHPEHIFPKQRATQWGEDGRPFHFLFYTGKQSYYSLMHDVYGK 168

Query: 308 IRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVM 367
           + +L K      R P    AS  SR+L    + W+ +E LE + VE ++  +Y QF+ ++
Sbjct: 169 VMQLEKH-----RGP--LSASAESRDL--IGSRWLIKEELEEMLVEKLSDEDYAQFIRLL 219

Query: 368 TRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVT 427
            +L+        EEF+ ++R+   I++     E  Q  E G+ F +T +  RK A A   
Sbjct: 220 EKLLTLPCGPAEEEFVQRFRRSVTIQSKKQLIEPVQYDEQGMAF-STSEGRRKSATAQAV 278

Query: 428 VYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAI 487
           VY+ G+GKI +N   Y  YFP   DR+QLMFP  F D L + D+  +V  GG S QAGAI
Sbjct: 279 VYEHGSGKIHVNGVDYLIYFPITQDREQLMFPFHFLDRLERHDVTCTVSGGGRSAQAGAI 338

Query: 488 RWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           R  ++  L +FV  +  E MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct: 339 RLAMARALCSFVTEDEVEWMRQAGLLTPDPRIRERKKPGQEGARRKFTWKKR 390

Mus musculus (taxid: 10090)

>sp|P82933|RT09_HUMAN 28S ribosomal protein S9, mitochondrial OS=Homo sapiens GN=MRPS9 PE=1 SV=2

 Score =  272 bits (695), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 143/334 (42%), Positives = 207/334 (61%), Gaps = 5/334 (1%)

Query: 207 EDYT-SFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMK 265
           E YT  F++ +   + +G+RHLANMMG D ETFTQ+DID AIAYL PSGL+ K+ARP MK
Sbjct: 67  ETYTEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMK 126

Query: 266 HPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQT 325
           HPE++FP ++  ++   GRP+H+LFYTGK + Y L H+   ++  L K +   L+     
Sbjct: 127 HPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSH-LQAKSLL 185

Query: 326 QASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFK 385
                +R+  +  + W+ +E LE + VE ++  +Y QF+ ++ +L+  +     EEF+ +
Sbjct: 186 PEKTVTRD--VIGSRWLIKEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEFVQR 243

Query: 386 YRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFD 445
           +R+   +++     E  Q  E G+ F +  +  RK A+A+  VY+ G+G+I +N   Y  
Sbjct: 244 FRRSVTLESKKQLIEPVQYDEQGMAF-SKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQL 302

Query: 446 YFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRE 505
           YFP   DR+QLMFP  F D L K D+  +V  GG S QAGAIR  ++  L +FV  +  E
Sbjct: 303 YFPITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDEVE 362

Query: 506 RMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
            MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct: 363 WMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR 396

Homo sapiens (taxid: 9606)

>sp|P34388|RT09_CAEEL Probable 40S ribosomal protein S9, mitochondrial OS=Caenorhabditis elegans GN=F09G8.3 PE=3 SV=2

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 180/369 (48%), Gaps = 29/369 (7%)

Query: 194 KVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPS 253
           K+ KA++ YLK ++ + + ME  +  +E GRRHLA MM  D+    Q+ ID AI YL PS
Sbjct: 30  KIGKALETYLKHSQQHVAMMEKHRAEFETGRRHLAKMMSLDIHELDQEAIDRAILYLFPS 89

Query: 254 GLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNK 313
           GL    ARP M+ P+E+ P  +   FD  G+P    F+T  P +Y L  +  V    + K
Sbjct: 90  GLTDPNARPVMRPPDEILPKFQRFTFDEEGKPEGSRFFTLSPKIYGLLSDIGVKTHSVMK 149

Query: 314 MEDEDL--RNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
             DE +  R+  ++    A+    L+ ++W++ + L++   E  +K  Y Q +     L 
Sbjct: 150 FYDEHVGSRSVNRSDLEPAN----LSGSQWVTADKLKKKLSEKFSKELYGQVIIAFEHLA 205

Query: 372 NHKYAYLHEEFIFKYRQPKVIKTMN--FDPEEPQAGEDGVKFVTTKDCPRKC--ARADVT 427
           +   + + ++F+ ++R+P    T +  F P  P+     V      +   +C   RA V 
Sbjct: 206 SLPGSAIEQKFLMEFREPMTASTGSKLFGPAIPEVHVCAVTNRRYAEVTTRCKDTRATVK 265

Query: 428 VYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVAS------------- 474
           V   G GK  I+     D F     R+ L+ P+I +  L + D+ A+             
Sbjct: 266 VTDAGKGKFDIDGLQLHD-FRHLQAREILLAPMIVSQSLGRFDVTATTSCISNTLPEAPN 324

Query: 475 ----VREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARA 530
               +R GG S    A+R G +  +   ++PE  E +RL+GLLT D R+ ER K  Q  A
Sbjct: 325 KAPLMRSGGMSALPRAVRHGTALCVAA-LQPEAIEPLRLSGLLTLDPRKNERSKVNQPGA 383

Query: 531 RKKFTWKKR 539
           R K+ WK+R
Sbjct: 384 RAKWIWKRR 392

Caenorhabditis elegans (taxid: 6239)

>sp|Q6G3I7|RS9_BARHE 30S ribosomal protein S9 OS=Bartonella henselae (strain ATCC 49882 / Houston 1) GN=rpsI PE=3 SV=1

 Score = 99.4 bits (246), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 77/121 (63%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG+GKITIN K +  YF     R  L  P++ T+   + DI+A+V  G
Sbjct: 43  RKDAVARVWI-KPGSGKITINNKEFDKYFARPVLRMILRQPIVATNRDTQFDIIATVAGG 101

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGA+R GIS  L  + EPE+R  ++  G LTRD R  ERKK G+A+AR+ F + K
Sbjct: 102 GLSGQAGAVRHGISKAL-TYYEPELRTILKKGGFLTRDSRVVERKKYGKAKARRSFQFSK 160

Query: 539 R 539
           R
Sbjct: 161 R 161

Bartonella henselae (strain ATCC 49882 / Houston 1) (taxid: 283166)

>sp|C6C1K0|RS9_DESAD 30S ribosomal protein S9 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rpsI PE=3 SV=1

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 75/121 (61%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A   +Y+ GTG IT+N K Y DYFP +  +  +  PL  T  L K DI  +   G
Sbjct: 12  RKNAVARTRLYE-GTGAITVNGKPYEDYFPRKTLQMIVQQPLKLTKTLGKFDIKVNADGG 70

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G +GQA A+R GIS  L   ++PE+R  ++ AGLLTRD R+KERKK GQ  AR KF + K
Sbjct: 71  GVAGQAQAVRHGISRALIE-IDPELRSILKRAGLLTRDARKKERKKYGQPGARAKFQYSK 129

Query: 539 R 539
           R
Sbjct: 130 R 130

Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) (taxid: 526222)

>sp|Q38UV5|RS9_LACSS 30S ribosomal protein S9 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsI PE=3 SV=1

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 431 PGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWG 490
           PGTGKITIN K   DY P  N    +  PL  T+  +  DI+ +V  GG SGQAGAIR G
Sbjct: 23  PGTGKITINNKDVVDYVPFANLILDMKQPLTITETTDSYDILVNVNGGGFSGQAGAIRHG 82

Query: 491 ISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           IS  L   V+P+ R  ++ AG+LTRD R KERKKPG  +ARK   + KR
Sbjct: 83  ISRALLT-VDPDFRPALKSAGMLTRDPRMKERKKPGLKKARKASQFSKR 130

Lactobacillus sakei subsp. sakei (strain 23K) (taxid: 314315)

>sp|A9IVX6|RS9_BART1 30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG+GKI IN K +  YF     R  L  P++ T+   + DIVA+V  G
Sbjct: 43  RKDAVARVWI-KPGSGKIIINNKEFDKYFARPVLRMILRQPIVATNRDTQFDIVATVAGG 101

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GIS  L  + EPE+R  ++  G LTRD R  ERKK G+A+AR+ F + K
Sbjct: 102 GLSGQAGAIRHGISKAL-TYYEPELRPILKKGGFLTRDSRVVERKKYGKAKARRSFQFSK 160

Query: 539 R 539
           R
Sbjct: 161 R 161

Bartonella tribocorum (strain CIP 105476 / IBS 506) (taxid: 382640)

>sp|Q757I0|RT09_ASHGO 37S ribosomal protein S9, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRPS9 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 121/261 (46%), Gaps = 35/261 (13%)

Query: 290 FYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALER 349
           FY+  P           L+RK  K +    R   +  AS+  R        W+S +    
Sbjct: 43  FYSANPAHEAHMDRLEALLRKHTKQQAR--RVAVERTASDRPR--------WLSFDQYAL 92

Query: 350 ITVEPITKP-EYQQFVAVMTRL-------VNHKYAYLHEEFIFKYR---QPKVIKTMNFD 398
           I      KP +Y+Q V+V+ RL        N + A   E F+ K R   Q  V + ++  
Sbjct: 93  IGGTSRLKPTQYRQLVSVLDRLHAIDPQLSNGEIAATLEAFLRKSRLEEQNVVRQELDHL 152

Query: 399 PEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMF 458
                 G             RK + A V + + G+G++ +N + + DYF    DR  +M+
Sbjct: 153 GRACAVGR------------RKTSSAKVWLVR-GSGEVLVNGRTFADYFSKIKDRDAIMY 199

Query: 459 PLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFR 518
           PL   D   K +I A+VR GG +GQA AI   ++  L  F  P ++ R+  AG+LTRD+R
Sbjct: 200 PLRVLDAAGKYNIFAAVRGGGVTGQAEAIMHAVAKALVVF-NPLLKTRLHRAGVLTRDYR 258

Query: 519 RKERKKPGQARARKKFTWKKR 539
             ERKKPG+ +ARK   W KR
Sbjct: 259 HVERKKPGKRKARKMPAWVKR 279

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6BIJ5|RT09_DEBHA 37S ribosomal protein S9, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MRPS9 PE=3 SV=2

 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 35/261 (13%)

Query: 290 FYTGKPNLYELFHNANVLIRKLNKM-----EDEDLRNPKQTQASEASRELYLTNTEWMSQ 344
           FY G P   E  +  N LIRK   +     +D++++N K       S E Y T  +  ++
Sbjct: 87  FYGGNPVHEENLNTLNGLIRKYINLPTRIVDDKEIQNTK-----FVSFEEYKTRIQSGTR 141

Query: 345 EALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQA 404
                  ++PI   E  Q +        H+   +  E + +     + K  N   E  +A
Sbjct: 142 -------LKPIHHKELTQLL--------HRLRSIDPELMPREVSDVLAKFANTSSESAKA 186

Query: 405 GEDGVKFVTTKDCPRKCA-----RADVTVY-QPGTGKITINEKHYFDYFPDENDRQQLMF 458
            +   K  T  +  R  +     R+   VY   G G++ +N K   +YFP E DR+++ +
Sbjct: 187 AQ---KVKTLDEFGRAISLGKRKRSVAKVYLTKGDGQVMVNGKSLLEYFPKEADRRRIAY 243

Query: 459 PLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFR 518
           P        + ++ A V+ GG +GQA A+ +GI+  L  F  P ++ R+  +GL+TRD R
Sbjct: 244 PFQVVSQEGQYNVFAEVQSGGSTGQAEAVMYGIAKDLVIF-NPLLKSRLHKSGLMTRDAR 302

Query: 519 RKERKKPGQARARKKFTWKKR 539
           + ERKKPG+ +ARK  TW KR
Sbjct: 303 KVERKKPGKVKARKSPTWVKR 323

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
350535082	395	uncharacterized protein LOC100165190 [Ac	0.634	0.865	0.572	1e-108
157167676	394	mitochondrial ribosomal protein, S9, put	0.666	0.911	0.520	1e-103
194743502	395	GF16848 [Drosophila ananassae] gi|190627	0.695	0.949	0.5	1e-99
195392487	396	GJ24698 [Drosophila virilis] gi|19415297	0.638	0.868	0.525	2e-99
194899368	395	GG24884 [Drosophila erecta] gi|190650935	0.641	0.875	0.517	2e-99
24644917	395	mitochondrial ribosomal protein S9 [Dros	0.638	0.870	0.520	5e-99
195498645	395	GE25764 [Drosophila yakuba] gi|194182713	0.638	0.870	0.517	9e-99
195036798	395	GH19026 [Drosophila grimshawi] gi|193894	0.638	0.870	0.514	1e-98
195110605	396	GI22839 [Drosophila mojavensis] gi|19391	0.638	0.868	0.514	1e-98
195569061	395	GD19454 [Drosophila simulans] gi|1941984	0.638	0.870	0.517	3e-98

>gi|350535082|ref|NP_001232984.1| uncharacterized protein LOC100165190 [Acyrthosiphon pisum] gi|239788891|dbj|BAH71102.1| ACYPI006151 [Acyrthosiphon pisum]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/346 (57%), Positives = 249/346 (71%), Gaps = 4/346 (1%)

Query: 194 KVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPS 253
           K S AM+AYL+RA  Y SFM+ + H Y VG+RHLANMMG D ETFTQ DID AI YL PS
Sbjct: 54  KTSLAMRAYLQRATQYNSFMQQQTHEYNVGKRHLANMMGVDPETFTQSDIDVAIDYLFPS 113

Query: 254 GLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNK 313
           GLY  KARP MK P EVFP KKDAEFD  GRP+H  FYTGKPN Y + HN    + +LNK
Sbjct: 114 GLYDPKARPLMKPPSEVFPSKKDAEFDESGRPFHVFFYTGKPNFYLILHNIATKLSELNK 173

Query: 314 MEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNH 373
            ED  LR  K     +  ++L    ++W+S+E LE++TVE ++  EY+ FV  + RL+ H
Sbjct: 174 FEDS-LR--KNNILPDPDKKLTSLGSQWLSKEDLEKLTVEKLSDHEYKNFVIAIERLLKH 230

Query: 374 KYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGT 433
             +Y + EFI  Y++P +      +    +  +DG  FVT KDCPRK ARADVTVY PGT
Sbjct: 231 PCSYKYGEFISDYQKPMISTKAIIESAPVEYTKDGRAFVTVKDCPRKDARADVTVYYPGT 290

Query: 434 GKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISW 493
           GK++IN K   ++F D   R+Q++FPL+FTDM++KVDI A+VR GG SG+AGAIR+GISW
Sbjct: 291 GKLSINGKG-IEFFDDIQAREQILFPLLFTDMVDKVDIHATVRGGGVSGKAGAIRFGISW 349

Query: 494 GLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
            LR+FV+PE  ERMR+AGLL +D+RR+ERKKPGQARAR+KFTWKKR
Sbjct: 350 SLRSFVDPETVERMRIAGLLQKDYRRRERKKPGQARARRKFTWKKR 395

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167676|ref|XP_001661636.1| mitochondrial ribosomal protein, S9, putative [Aedes aegypti] gi|108872301|gb|EAT36526.1| AAEL011391-PA [Aedes aegypti]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/371 (52%), Positives = 254/371 (68%), Gaps = 12/371 (3%)

Query: 174 LAKETANIPETPHH--DMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMM 231
           L   +A +P +P     +  + KVSKAM+AYL+RA+ +  FM+ +   +++G+RHLANMM
Sbjct: 31  LYSTSAEVPSSPESISTVPKKGKVSKAMKAYLERAKAHDEFMKIQNLEFKLGKRHLANMM 90

Query: 232 GRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFY 291
           G D ETFTQ DID AI YL PSGLY KKARP MK PEEV P +K AEFD  GRP+H +FY
Sbjct: 91  GEDPETFTQADIDRAIQYLFPSGLYDKKARPMMKPPEEVIPQRKAAEFDETGRPFHSMFY 150

Query: 292 TGKPNLYELFHNANVLIRKLNKMEDEDLR---NPKQTQASEASRELYLTNTEWMSQEALE 348
           TG+PN Y+L  +    +  LN  ED  +R    P  TQ  + S       +EW+++E LE
Sbjct: 151 TGRPNYYQLLFDIVGYLNNLNAFEDRMIRKQLTPDPTQQIDTS------GSEWLAKEVLE 204

Query: 349 RITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDG 408
           R  +E I+  EY+ FV VMTRL+ H Y+Y  + FI +YR+P + KT      +PQ  E+G
Sbjct: 205 RQLLEDISDSEYENFVNVMTRLIQHPYSYKEKAFIDQYRKPLLAKTDADQIPKPQLDENG 264

Query: 409 VKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNK 468
             F+T  +C RK ARADVT+  PGTG ITIN +    YF     R+Q++FPLIF++M+ K
Sbjct: 265 KSFITIYECLRKSARADVTIIAPGTGNITINGQD-ITYFDSVQPREQVLFPLIFSEMIGK 323

Query: 469 VDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQA 528
           VD+VA+V  GG SGQAGAIRWGI+ GLR+FV+ E  ++MR+AGLL RD+RR+ERKKPGQA
Sbjct: 324 VDVVANVEGGGFSGQAGAIRWGIAMGLRSFVDVETIDKMRMAGLLQRDYRRRERKKPGQA 383

Query: 529 RARKKFTWKKR 539
            AR+K+TWKKR
Sbjct: 384 GARRKYTWKKR 394

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743502|ref|XP_001954239.1| GF16848 [Drosophila ananassae] gi|190627276|gb|EDV42800.1| GF16848 [Drosophila ananassae]

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 191/382 (50%), Positives = 258/382 (67%), Gaps = 7/382 (1%)

Query: 158 SSKTPNPPDKPNEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEK 217
           + KTP         ++LA E   +  +P      + KVSKAM+AYLKRA ++  FM+ + 
Sbjct: 21  ACKTPATTFGHTAVAQLATEV-TVQASPA--AVQKQKVSKAMRAYLKRANEHDEFMKTQH 77

Query: 218 HSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVFPPKKDA 277
             +++G+RHLANMMG D ETFTQ+DI+EAI+YL PSGLY  KARP MK PEEVFP +K A
Sbjct: 78  LEFQIGKRHLANMMGADAETFTQEDINEAISYLFPSGLYDPKARPAMKSPEEVFPARKAA 137

Query: 278 EFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLT 337
           EFD  GRP+H +FYTGKPN ++L H+     RKL  +E+  LR   +    + +++L ++
Sbjct: 138 EFDETGRPFHSMFYTGKPNFFQLLHDIVEETRKLADLEERMLRRGNK---PDENQKLEMS 194

Query: 338 NTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNF 397
             + + ++ LE + VE I   EY  F   M RL+   YAY  + FI ++ +P + ++   
Sbjct: 195 GFQLLPKDQLELVLVESIADIEYSNFTNSMDRLIASPYAYKSKAFIERFLKPLLDQSKQL 254

Query: 398 DPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLM 457
           +  +P+  E G +F+TT +C RK ARADVT+  PGTGKI+IN K    YF DEN R+QL+
Sbjct: 255 EVPKPKIDEQGRQFITTYECLRKTARADVTIRLPGTGKISINGKD-ISYFEDENCREQLL 313

Query: 458 FPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDF 517
           FPL F++ML KVD+ A+V  GG SGQAGAIRWGI+  LR+FV+ EM E MRLAGLLTRD+
Sbjct: 314 FPLQFSEMLGKVDVEANVEGGGPSGQAGAIRWGIAMSLRSFVDQEMIESMRLAGLLTRDY 373

Query: 518 RRKERKKPGQARARKKFTWKKR 539
           RR+ERKK GQ  AR+K+TWKKR
Sbjct: 374 RRRERKKFGQEGARRKYTWKKR 395

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195392487|ref|XP_002054889.1| GJ24698 [Drosophila virilis] gi|194152975|gb|EDW68409.1| GJ24698 [Drosophila virilis]

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/348 (52%), Positives = 246/348 (70%), Gaps = 4/348 (1%)

Query: 192 RTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
           + KVSKAM+AYL+RA ++  FM+ +   +++G+RHLANMMG D ETFTQ+DIDEAI YL 
Sbjct: 53  KQKVSKAMKAYLERANEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQQDIDEAINYLF 112

Query: 252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
           PSGL+ K+ARP M+ PEEVFP +K AEFD  GRP+H +FYTGKPN ++L H+      KL
Sbjct: 113 PSGLFDKRARPSMRSPEEVFPARKAAEFDETGRPFHSMFYTGKPNYFQLLHDIVTETNKL 172

Query: 312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
           N +E+  LR   +    + +++L +  ++ + +E LER+ VE I   EYQ F + M RL+
Sbjct: 173 NDLEERMLRRGNK---PDENQKLEMAGSQLLRKEQLERVLVEHIADIEYQNFTSAMERLI 229

Query: 372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
              YAY  + FI ++ +P + ++   +  +P+  E G ++VTT +C RK ARADVTV  P
Sbjct: 230 ISPYAYKSKAFIERFLKPLIDQSKQLEVPKPKIDEQGRQYVTTYECLRKTARADVTVRLP 289

Query: 432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
           GTGKITIN +    YF  E  R+QL+FPL ++ ML KVD+ A+V  GG SGQAGAIRWGI
Sbjct: 290 GTGKITINGQD-ISYFSLEECREQLLFPLSYSKMLGKVDVEANVEGGGPSGQAGAIRWGI 348

Query: 492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           +  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct: 349 AMSLRSFVDQEMIETMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 396

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194899368|ref|XP_001979232.1| GG24884 [Drosophila erecta] gi|190650935|gb|EDV48190.1| GG24884 [Drosophila erecta]

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/350 (51%), Positives = 249/350 (71%), Gaps = 4/350 (1%)

Query: 190 FDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAY 249
             + +VSKAM+AYLKRA ++  FM+ +   +++G+RHLANMMG DVETFTQ+DIDEAI+Y
Sbjct: 50  IQKQRVSKAMRAYLKRANEHDEFMKTQHLEFQIGKRHLANMMGADVETFTQEDIDEAISY 109

Query: 250 LMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIR 309
           L PSGLY +K RP MK PE VFP +K AEFD  GRP+H +FYTGKPN ++L H+   ++ 
Sbjct: 110 LFPSGLYDQKGRPAMKSPEVVFPARKAAEFDETGRPFHSMFYTGKPNFFQLLHD---IVD 166

Query: 310 KLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTR 369
           + NK+ D + R  ++    + +++L +   + + ++ LE + VE I   EY  F   M R
Sbjct: 167 ETNKLADLEERMLRRGNKPDDNQKLGIAGFQLLPKDQLELLLVESIADIEYSNFTKSMER 226

Query: 370 LVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVY 429
           L+   YAY  +EFI +Y +P + ++   +  +P+  E+G +++TT +C RK ARADVTV 
Sbjct: 227 LIASPYAYKSKEFIERYLKPLMDQSKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVR 286

Query: 430 QPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRW 489
            PGTGKI+IN K    YF DEN ++QL+FPL F+++L KVD+ A+V  GG SGQAGAIRW
Sbjct: 287 LPGTGKISINGKD-ISYFEDENCKEQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRW 345

Query: 490 GISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           GI+  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct: 346 GIAMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 395

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24644917|ref|NP_524270.2| mitochondrial ribosomal protein S9 [Drosophila melanogaster] gi|19528589|gb|AAL90409.1| RH44312p [Drosophila melanogaster] gi|23170685|gb|AAF54157.3| mitochondrial ribosomal protein S9 [Drosophila melanogaster] gi|220949328|gb|ACL87207.1| mRpS9-PA [synthetic construct]

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 181/348 (52%), Positives = 248/348 (71%), Gaps = 4/348 (1%)

Query: 192 RTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
           + +VSKAM+AYLKRA ++  FM+ +   +++G+RHLANMMG D ETFTQ+DIDEAI+YL 
Sbjct: 52  KQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQEDIDEAISYLF 111

Query: 252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
           PSGLY +KARP MK PE VFP +K AEFD  GRP+H +FYTGKPN ++L H+   ++ + 
Sbjct: 112 PSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMFYTGKPNFFQLLHD---IVEET 168

Query: 312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
           NK+ D + R  ++    + +++L +   + + ++ LE + VE I   EY  F   M RL+
Sbjct: 169 NKLADLEERMLRRGNKPDENQKLEIAGFQLLPKDQLELLLVESIADIEYSNFTNSMDRLI 228

Query: 372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
              YAY  + FI +Y +P + ++   +  +P+  E+G +++TT +C RK ARADVTV  P
Sbjct: 229 ASPYAYKSKAFIERYMKPLMDQSKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLP 288

Query: 432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
           GTGKI+IN K    YF DEN R+QL+FPL F+++L KVD+ A+V  GG SGQAGAIRWGI
Sbjct: 289 GTGKISINGKD-ISYFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGI 347

Query: 492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           +  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct: 348 AMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 395

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195498645|ref|XP_002096612.1| GE25764 [Drosophila yakuba] gi|194182713|gb|EDW96324.1| GE25764 [Drosophila yakuba]

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 180/348 (51%), Positives = 248/348 (71%), Gaps = 4/348 (1%)

Query: 192 RTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
           + +VSKAM+AYLKRA ++  FM+ +   +++G+RHLANMMG D ETFTQ+DIDEAI+YL 
Sbjct: 52  KQRVSKAMRAYLKRANEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQEDIDEAISYLF 111

Query: 252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
           PSGLY +KARP MK PE VFP +K AEFD  GRP+H +FYTGKPN ++L H+   ++ + 
Sbjct: 112 PSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMFYTGKPNFFQLLHD---IVEET 168

Query: 312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
           NK+ D + R  ++    + +++L +   + + ++ LE + VE I   EY  F   M RL+
Sbjct: 169 NKLADLEERMLRRGNKPDENQKLGIAGFQLLPKDQLELLLVESIADIEYSNFTKSMDRLI 228

Query: 372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
              YAY  + FI +Y +P + ++   +  +P+  E+G +++TT +C RK ARADVTV  P
Sbjct: 229 ASPYAYKSKAFIERYLKPLMDQSKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLP 288

Query: 432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
           GTGKI+IN K    YF DEN ++QL+FPL F+++L KVD+ A+V  GG SGQAGAIRWGI
Sbjct: 289 GTGKISINGKD-ISYFEDENCKEQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGI 347

Query: 492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           +  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct: 348 AMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 395

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195036798|ref|XP_001989855.1| GH19026 [Drosophila grimshawi] gi|193894051|gb|EDV92917.1| GH19026 [Drosophila grimshawi]

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/348 (51%), Positives = 248/348 (71%), Gaps = 4/348 (1%)

Query: 192 RTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
           + KVSKAM+AYL+RA ++  FM+ +   +++G+RHLANMMG D ETFTQ+DIDEAIAYL 
Sbjct: 52  KQKVSKAMKAYLERANEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQQDIDEAIAYLF 111

Query: 252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
           PSGL+ K ARP M+ PEEVFP +K AEFD  GRP+H +FYTGKPN ++L H+   ++++ 
Sbjct: 112 PSGLFDKSARPAMRTPEEVFPARKAAEFDETGRPFHSMFYTGKPNFFQLLHD---IVKET 168

Query: 312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
           +K+ D + R  ++    + ++++     + + +E LER+ VE I   EY  F   M RL+
Sbjct: 169 HKLYDLEERMLRRGNKPDENQKIETAGFQLLPKEQLERMLVEHIADIEYLNFTNTMERLI 228

Query: 372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
           +  YAY  + FI ++ +P + ++   +  +P+   DG +++TT +C RK ARADVTV  P
Sbjct: 229 SSPYAYKSKAFIERFLKPLIDQSKQLEVPKPKIDGDGRQYITTYECLRKTARADVTVRLP 288

Query: 432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
           GTGKITIN  H   YF DE +++QL+FPL F+ ML KVD+ A+V  GG SGQ+GAIRWGI
Sbjct: 289 GTGKITIN-GHDISYFTDEQNKEQLLFPLSFSSMLGKVDVEANVEGGGPSGQSGAIRWGI 347

Query: 492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           +  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct: 348 AMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 395

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195110605|ref|XP_001999870.1| GI22839 [Drosophila mojavensis] gi|193916464|gb|EDW15331.1| GI22839 [Drosophila mojavensis]

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/348 (51%), Positives = 249/348 (71%), Gaps = 4/348 (1%)

Query: 192 RTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
           + KVSKAM+AYL+RA+++  FM+ +   +++G+RHLANMMG D ETFTQ+DIDEAIAYL 
Sbjct: 53  KQKVSKAMKAYLERAKEHDDFMKTQDLEFQIGKRHLANMMGADAETFTQEDIDEAIAYLF 112

Query: 252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
           PSGL+ K+ARP M+ PEEVFP +K AEFD  GRP+H +FYTGKPN ++L H+   ++ + 
Sbjct: 113 PSGLFDKRARPAMRSPEEVFPARKAAEFDETGRPFHSMFYTGKPNFFQLLHD---IVEET 169

Query: 312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
           NK+ D + R  ++    + +++L     + + ++ LER+ VE I   EYQ F   M RL+
Sbjct: 170 NKLYDLEERMLRRGNKPDENQKLETAGFQLLPKDQLERVLVEHIADIEYQNFTNAMDRLI 229

Query: 372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
           +  Y+Y  + FI +Y +P + ++   +  +P+  E G +++TT +C RK ARADVTV  P
Sbjct: 230 SLPYSYKSKAFIERYLKPLIDQSKQLEVPKPKIDEQGRQYITTYECLRKTARADVTVRLP 289

Query: 432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
           GTGKITIN +    YF  E  ++QL+FPL +++ML KVD+ A+V  GG SGQAGAIRWGI
Sbjct: 290 GTGKITINGQD-ISYFSSEECKEQLLFPLNYSEMLGKVDVEANVEGGGPSGQAGAIRWGI 348

Query: 492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           +  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct: 349 AMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKYGQEGARRKYTWKKR 396

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195569061|ref|XP_002102530.1| GD19454 [Drosophila simulans] gi|194198457|gb|EDX12033.1| GD19454 [Drosophila simulans]

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 180/348 (51%), Positives = 248/348 (71%), Gaps = 4/348 (1%)

Query: 192 RTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
           + +VSKAM+AYLKRA ++  FM+ +   +++G+RHLANMMG D ETFTQ+DIDEAI+YL 
Sbjct: 52  KQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMMGADPETFTQEDIDEAISYLF 111

Query: 252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
           PSGLY +KARP MK PE VFP +K AEFD  GRP+H +FYTGKPN ++L H+   ++ + 
Sbjct: 112 PSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMFYTGKPNFFQLLHD---IVEET 168

Query: 312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
           NK+ D + R  ++    + +++L +   + + ++ LE + VE I   EY  F   M RL+
Sbjct: 169 NKLADLEERMLRRGNKPDENQKLEIAGFQLLPKDQLELLLVESIADIEYSNFSNSMDRLI 228

Query: 372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
              YAY  + FI +Y +P + ++   +  +P+  E+G +++TT +C RK ARADVTV  P
Sbjct: 229 ASPYAYKSKAFIERYLKPLMDQSKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLP 288

Query: 432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
           GTGKI+IN K    YF DEN ++QL+FPL F+++L KVD+ A+V  GG SGQAGAIRWGI
Sbjct: 289 GTGKISINGKD-ISYFEDENCKEQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGI 347

Query: 492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
           +  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct: 348 AMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 395

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
FB|FBgn0037529	395	mRpS9 "mitochondrial ribosomal	0.638	0.870	0.520	1.3e-93
ZFIN|ZDB-GENE-060825-257	385	zgc:153172 "zgc:153172" [Danio	0.601	0.841	0.472	2.7e-75
UNIPROTKB|E2RKY3	395	MRPS9 "Uncharacterized protein	0.630	0.860	0.454	6.1e-71
UNIPROTKB|Q58DQ5	396	MRPS9 "28S ribosomal protein S	0.614	0.835	0.452	1.3e-70
MGI|MGI:1916777	390	Mrps9 "mitochondrial ribosomal	0.625	0.864	0.436	1.4e-69
RGD|1306558	338	Mrps9 "mitochondrial ribosomal	0.625	0.997	0.439	1.8e-69
UNIPROTKB|P82933	396	MRPS9 "28S ribosomal protein S	0.614	0.835	0.425	1.3e-68
UNIPROTKB|F1P4R6	348	MRPS9 "Uncharacterized protein	0.608	0.942	0.425	1.9e-67
UNIPROTKB|I3LU08	261	MRPS9 "Uncharacterized protein	0.471	0.973	0.408	1.2e-47
WB|WBGene00017319	392	mrps-9 [Caenorhabditis elegans	0.515	0.709	0.294	1.2e-31

FB|FBgn0037529 mRpS9 "mitochondrial ribosomal protein S9" [Drosophila melanogaster (taxid:7227)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 181/348 (52%), Positives = 248/348 (71%)

Query:   192 RTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
             + +VSKAM+AYLKRA ++  FM+ +   +++G+RHLANMMG D ETFTQ+DIDEAI+YL 
Sbjct:    52 KQRVSKAMRAYLKRATEHDEFMKTQHLEFQIGKRHLANMMGADAETFTQEDIDEAISYLF 111

Query:   252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
             PSGLY +KARP MK PE VFP +K AEFD  GRP+H +FYTGKPN ++L H+   ++ + 
Sbjct:   112 PSGLYDQKARPAMKSPEVVFPARKAAEFDETGRPFHSMFYTGKPNFFQLLHD---IVEET 168

Query:   312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
             NK+ D + R  ++    + +++L +   + + ++ LE + VE I   EY  F   M RL+
Sbjct:   169 NKLADLEERMLRRGNKPDENQKLEIAGFQLLPKDQLELLLVESIADIEYSNFTNSMDRLI 228

Query:   372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
                YAY  + FI +Y +P + ++   +  +P+  E+G +++TT +C RK ARADVTV  P
Sbjct:   229 ASPYAYKSKAFIERYMKPLMDQSKQLEVPKPRIDEEGRQYITTYECLRKTARADVTVRLP 288

Query:   432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
             GTGKI+IN K    YF DEN R+QL+FPL F+++L KVD+ A+V  GG SGQAGAIRWGI
Sbjct:   289 GTGKISINGKD-ISYFEDENCREQLLFPLQFSELLGKVDVEANVEGGGPSGQAGAIRWGI 347

Query:   492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
             +  LR+FV+ EM E MRLAGLLTRD+RR+ERKK GQ  AR+K+TWKKR
Sbjct:   348 AMSLRSFVDQEMIESMRLAGLLTRDYRRRERKKFGQEGARRKYTWKKR 395

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-060825-257 zgc:153172 "zgc:153172" [Danio rerio (taxid:7955)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 155/328 (47%), Positives = 212/328 (64%)

Query:   212 FMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMKHPEEVF 271
             F++ +   +E+G+RHLANMMG D ETFTQ+D+D +IAYL PSGL+ K ARP MKHPE++F
Sbjct:    62 FIDKQVEEFEIGKRHLANMMGEDPETFTQEDVDRSIAYLFPSGLFEKHARPVMKHPEQIF 121

Query:   272 PPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEAS 331
             P +K  ++D  GRP+HFLFYTGK + Y L H+    +  + K +D+ +RN     A   +
Sbjct:   122 PKQKAVQWDAEGRPFHFLFYTGKQSYYSLMHDVYDKMLVVEKHQDK-MRNKGLFMAD--T 178

Query:   332 RELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKV 391
             +++ L+ + W+ +E +E I VE I+  +Y +F+ +  RL++  Y  L E FI K+R+P  
Sbjct:   179 KQISLSGSRWLLKEEMEEILVENISDQDYLRFIQLAERLLSMPYCSLEENFILKFRKPLE 238

Query:   392 IKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDEN 451
             +++   +  E Q    GV F +  D  RK A+A VT+   G+G ITIN  +Y  YFP   
Sbjct:   239 VQSREQEIPELQHDARGVAF-SVADGRRKSAKARVTLIDSGSGNITINGTNYLHYFPVLQ 297

Query:   452 DRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAG 511
             DR+QLMFPL F  +L + DI  SV   G S QAGA+R  IS  L +FV     E+MR AG
Sbjct:   298 DREQLMFPLHFVGLLGRFDIEGSVEGSGRSSQAGAVRLAISRALLSFVSEGEVEKMRQAG 357

Query:   512 LLTRDFRRKERKKPGQARARKKFTWKKR 539
             LLT D R KERKKPGQ +ARKKFTWKKR
Sbjct:   358 LLTADPRIKERKKPGQEKARKKFTWKKR 385

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E2RKY3 MRPS9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 159/350 (45%), Positives = 214/350 (61%)

Query:   193 TKVSKAMQAYLKRAEDYT-SFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
             T VS        R E YT  F++ +   + +G+RHLANMMG D ETFTQ+DID+AIAYL 
Sbjct:    53 TGVSTKKNVAALRRETYTVDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDKAIAYLF 112

Query:   252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
             PSGL+ K+ARP MKHPE++FP ++  ++   GRP+HFLFYTGK   Y L H A     KL
Sbjct:   113 PSGLFEKQARPIMKHPEQIFPKQRAIQWGEDGRPFHFLFYTGKQAYYSLMHEA---YGKL 169

Query:   312 NKMEDEDLRNPKQTQA--SEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTR 369
               +E E  +N  Q +   SE ++   L ++ W+ +E LE + VE ++  +Y QF+ ++ R
Sbjct:   170 --LEVEKRQNQLQAKGLFSEKTKTKDLIDSRWLIKEELEEMLVEKLSDQDYAQFIRLLER 227

Query:   370 LVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVY 429
             L+   +    EEF+ ++R+   I++     E  Q  E G+ F +T +  RK A+A+  VY
Sbjct:   228 LLT-LHCGSEEEFVQRFRRSVTIQSKKQLIEPVQYDEQGMAF-STSEGKRKSAKAEAIVY 285

Query:   430 QPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRW 489
               G+G+I +N   Y  YFP   DR+QLMFP  F D L K D   +V  GG S QAGAIR 
Sbjct:   286 GHGSGRIKVNGIDYLLYFPVTQDREQLMFPFHFLDRLGKHDTTCTVSGGGRSSQAGAIRL 345

Query:   490 GISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
              ++  L +FV  E  E MR AGLLT D R KERKKPGQ  AR+KFTWKKR
Sbjct:   346 AVARALCSFVTEEEVEWMRQAGLLTADPRVKERKKPGQEGARRKFTWKKR 395

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q58DQ5 MRPS9 "28S ribosomal protein S9, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 152/336 (45%), Positives = 205/336 (61%)

Query:   205 RAEDYT-SFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPY 263
             R E YT  F++ +   + +G+RHLANMMG D ETFTQ+D+D AI YL PSGL+ K+ARP 
Sbjct:    65 RRESYTVDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDVDRAITYLFPSGLFEKRARPI 124

Query:   264 MKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPK 323
             MKHPEE+FP ++  ++   GRP+HFLFYTGK + Y L H A   +    + +D+ LR   
Sbjct:   125 MKHPEEIFPKQRAVQWGEDGRPFHFLFYTGKQSYYSLMHEAYGKVLHAEERQDQ-LR--A 181

Query:   324 QTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFI 383
             +   SE S+   L  + W+ +E LE + VE ++  +Y QF+ ++ RL         EEF+
Sbjct:   182 KGLFSEKSKSKDLIGSRWLIKEELEEMLVEKLSDQDYAQFIRLLERLSALPCDAAEEEFV 241

Query:   384 FKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHY 443
              ++R+   +++     E  Q  E G+ F T +   RK A A+  VY  G+GKI IN   Y
Sbjct:   242 GRFRRTVTVQSKKHLIEPLQYDEQGMAFSTGQG-KRKTANAEAVVYGHGSGKIEINGVDY 300

Query:   444 FDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEM 503
               YFP   DR+QLMFP  F D L K D+  +V  GG S QAGAIR  +S  L +F+  + 
Sbjct:   301 LLYFPVTQDREQLMFPFHFLDRLGKHDVTCTVSGGGRSSQAGAIRLAMSRALCSFITEDE 360

Query:   504 RERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
              E MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct:   361 VEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR 396

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1916777 Mrps9 "mitochondrial ribosomal protein S9" [Mus musculus (taxid:10090)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 152/348 (43%), Positives = 208/348 (59%)

Query:   193 TKVSKAMQAYLKRAEDYTS-FMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
             T V+        R E YT  F++ +   + +G+RHLANMMG D ETF ++DID AIAYL 
Sbjct:    53 TVVTTKKNVQASRQESYTEDFIKKQIEEFNIGKRHLANMMGEDPETFAEEDIDRAIAYLF 112

Query:   252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
             PSGL+ K+ARP MKHPE +FP ++  ++   GRP+HFLFYTGK + Y L H+    + +L
Sbjct:   113 PSGLFEKRARPMMKHPEHIFPKQRATQWGEDGRPFHFLFYTGKQSYYSLMHDVYGKVMQL 172

Query:   312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
              K      R P    AS  SR+L    + W+ +E LE + VE ++  +Y QF+ ++ +L+
Sbjct:   173 EKH-----RGP--LSASAESRDLI--GSRWLIKEELEEMLVEKLSDEDYAQFIRLLEKLL 223

Query:   372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
                     EEF+ ++R+   I++     E  Q  E G+ F +T +  RK A A   VY+ 
Sbjct:   224 TLPCGPAEEEFVQRFRRSVTIQSKKQLIEPVQYDEQGMAF-STSEGRRKSATAQAVVYEH 282

Query:   432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
             G+GKI +N   Y  YFP   DR+QLMFP  F D L + D+  +V  GG S QAGAIR  +
Sbjct:   283 GSGKIHVNGVDYLIYFPITQDREQLMFPFHFLDRLERHDVTCTVSGGGRSAQAGAIRLAM 342

Query:   492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
             +  L +FV  +  E MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct:   343 ARALCSFVTEDEVEWMRQAGLLTPDPRIRERKKPGQEGARRKFTWKKR 390

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1306558 Mrps9 "mitochondrial ribosomal protein S9" [Rattus norvegicus (taxid:10116)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 153/348 (43%), Positives = 213/348 (61%)

Query:   193 TKVSKAMQAYLKRAEDYTS-FMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLM 251
             T V+    A   R E YT  F+  +   + +G+RHLANMMG D ETFT++DID AIAYL 
Sbjct:     1 TVVTTKKNAQASRQESYTEDFIRKQIEEFNLGKRHLANMMGEDPETFTEEDIDRAIAYLF 60

Query:   252 PSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKL 311
             PSGL+ K+ARP MKHPE++FP ++  ++   GRP+HFLFYTGK + Y L H+    + +L
Sbjct:    61 PSGLFEKRARPMMKHPEQIFPKQRAIQWGEDGRPFHFLFYTGKQSYYSLMHDVYGKVLQL 120

Query:   312 NKMEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLV 371
              K      R P  ++ +E SR+L    + W+ +E LE + VE ++  +Y QF+ ++ +L+
Sbjct:   121 EKH-----RGPL-SENTE-SRDLI--GSRWLIKEELEEMLVEKLSDQDYTQFIRLLEKLL 171

Query:   372 NHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQP 431
                     E+F+ ++R+   +++     E  Q  E G+ F +T +  RK A A V VYQ 
Sbjct:   172 TLPCGPAEEDFVQRFRRSVTVQSKKQLIEPVQYDEQGMAF-STSEGRRKSATARVVVYQH 230

Query:   432 GTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGI 491
             G+GKI +N   Y  YFP   DR+QLMFP  F D L K D+  +V  GG S QAGAIR  +
Sbjct:   231 GSGKIHVNGVDYLLYFPILQDREQLMFPFHFLDRLEKHDVTCTVSGGGRSAQAGAIRLAM 290

Query:   492 SWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
             +  L +F+  +  E MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct:   291 AKALCSFITEDEVEWMRQAGLLTPDPRIRERKKPGQEGARRKFTWKKR 338

GO:0005739 "mitochondrion" evidence=ISO

UNIPROTKB|P82933 MRPS9 "28S ribosomal protein S9, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 143/336 (42%), Positives = 208/336 (61%)

Query:   205 RAEDYTS-FMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPY 263
             + E YT  F++ +   + +G+RHLANMMG D ETFTQ+DID AIAYL PSGL+ K+ARP 
Sbjct:    65 KRETYTEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPV 124

Query:   264 MKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPK 323
             MKHPE++FP ++  ++   GRP+H+LFYTGK + Y L H+   ++  L K +   L+   
Sbjct:   125 MKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSH-LQAKS 183

Query:   324 QTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFI 383
                    +R++    + W+ +E LE + VE ++  +Y QF+ ++ +L+  +     EEF+
Sbjct:   184 LLPEKTVTRDVI--GSRWLIKEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEFV 241

Query:   384 FKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHY 443
              ++R+   +++     E  Q  E G+ F +  +  RK A+A+  VY+ G+G+I +N   Y
Sbjct:   242 QRFRRSVTLESKKQLIEPVQYDEQGMAF-SKSEGKRKTAKAEAIVYKHGSGRIKVNGIDY 300

Query:   444 FDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEM 503
               YFP   DR+QLMFP  F D L K D+  +V  GG S QAGAIR  ++  L +FV  + 
Sbjct:   301 QLYFPITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDE 360

Query:   504 RERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
              E MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct:   361 VEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR 396

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0042769 "DNA damage response, detection of DNA damage" evidence=NAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=NAS

GO:0043043 "peptide biosynthetic process" evidence=IC

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P4R6 MRPS9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 142/334 (42%), Positives = 203/334 (60%)

Query:   207 EDYT-SFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYMK 265
             E YT +F++ +   +++G+RHLANMMG D ETFTQ+DID AIAYL PSGL+ K+ARP MK
Sbjct:    20 EKYTEAFIKKQIEEFDLGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFDKRARPMMK 79

Query:   266 HPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQT 325
             HP E+FP ++  ++   GRP+HFLFYTGK + Y L H     +  + K +D+ +      
Sbjct:    80 HPSEIFPEQRKIQWGEDGRPFHFLFYTGKQSYYSLMHETYEKLLNVQKHQDQLVAQGFSL 139

Query:   326 QASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFK 385
             Q  + +    L  + W+++  LE + +E ++  +Y +F+ ++ +L+    + + E +I K
Sbjct:   140 QKEKKN----LVGSRWLTKTELEGMLLEKLSDDDYSRFIRLLEKLMTLPCSDIEENYIKK 195

Query:   386 YRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFD 445
             + +   ++      E  +  E GV F +T +  RK +RA   VY  GTGKIT+N      
Sbjct:   196 FSKEIAVQLQKVSTEPLKYDEQGVAF-STGEGVRKTSRATAVVYDNGTGKITVNGIDILR 254

Query:   446 YFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRE 505
             YFP   DR+QL+FP  F D + K D + +V  GG S QAGAIR   +  LR+FV     E
Sbjct:   255 YFPVLQDREQLLFPFQFLDRVGKHDAICTVSGGGRSSQAGAIRLATAKALRSFVTETEVE 314

Query:   506 RMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR 539
              MR AGLLT D R +ERKKPGQ  AR+KFTWKKR
Sbjct:   315 FMRQAGLLTVDPRVRERKKPGQEGARRKFTWKKR 348

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|I3LU08 MRPS9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 455 (165.2 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 105/257 (40%), Positives = 148/257 (57%)

Query:   283 GRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWM 342
             GRP+HFLFYTGK + Y L H+    +  + K  ++ LR  K   A +         + W+
Sbjct:     8 GRPFHFLFYTGKQSYYSLMHDTYGKLLDVEKHHNQ-LR-AKDLLAEKTKILKDPIGSRWL 65

Query:   343 SQEALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEP 402
              +E LE + VE ++  +Y QF+ ++ RL         E+F+ ++R+   I++     E  
Sbjct:    66 IKEELEEMLVEKLSDQDYAQFIRLLERLSALPCGATEEDFVNRFRRSIPIQSKKQLIEPL 125

Query:   403 QAGEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIF 462
             Q  E G+ F +  +  RK A+A+V VY  G+G+I +N   Y  YFP   DR+QLMFPL F
Sbjct:   126 QYDEQGMAF-SRGEGKRKTAKAEVVVYGQGSGRIDVNGVDYLLYFPVTQDREQLMFPLHF 184

Query:   463 TDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKER 522
              D L K D+  +V  GG S QAGA+R  ++  L +FV  +  E MR AGLLT D R +ER
Sbjct:   185 LDRLGKHDMTCAVSGGGRSAQAGAVRLAMARALCSFVTEDEVEWMRQAGLLTADPRVRER 244

Query:   523 KKPGQARARKKFTWKKR 539
             KKPGQ  AR+KFTWKKR
Sbjct:   245 KKPGQEGARRKFTWKKR 261

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

WB|WBGene00017319 mrps-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 350 (128.3 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 84/285 (29%), Positives = 139/285 (48%)

Query:   194 KVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPS 253
             K+ KA++ YLK ++ + + ME  +  +E GRRHLA MM  D+    Q+ ID AI YL PS
Sbjct:    30 KIGKALETYLKHSQQHVAMMEKHRAEFETGRRHLAKMMSLDIHELDQEAIDRAILYLFPS 89

Query:   254 GLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNK 313
             GL    ARP M+ P+E+ P  +   FD  G+P    F+T  P +Y L  +  V    + K
Sbjct:    90 GLTDPNARPVMRPPDEILPKFQRFTFDEEGKPEGSRFFTLSPKIYGLLSDIGVKTHSVMK 149

Query:   314 MEDEDLRNPKQTQASEASRELYLTNTEWMSQEALERITVEPITKPEYQQFVAVMTRLVNH 373
               DE + + +    S+      L+ ++W++ + L++   E  +K  Y Q +     L + 
Sbjct:   150 FYDEHVGS-RSVNRSDLE-PANLSGSQWVTADKLKKKLSEKFSKELYGQVIIAFEHLASL 207

Query:   374 KYAYLHEEFIFKYRQPKVIKTMN--FDPEEPQAGEDGVKFVTTKDCPRKC--ARADVTVY 429
               + + ++F+ ++R+P    T +  F P  P+     V      +   +C   RA V V 
Sbjct:   208 PGSAIEQKFLMEFREPMTASTGSKLFGPAIPEVHVCAVTNRRYAEVTTRCKDTRATVKVT 267

Query:   430 QPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVAS 474
               G GK  I+     D F     R+ L+ P+I +  L + D+ A+
Sbjct:   268 DAGKGKFDIDGLQLHD-FRHLQAREILLAPMIVSQSLGRFDVTAT 311

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P82933	RT09_HUMAN	No assigned EC number	0.4281	0.6103	0.8308	yes	N/A
Q58DQ5	RT09_BOVIN	No assigned EC number	0.4483	0.6215	0.8459	yes	N/A
Q9D7N3	RT09_MOUSE	No assigned EC number	0.4318	0.6326	0.8743	yes	N/A
Q38UV5	RS9_LACSS	No assigned EC number	0.5137	0.2003	0.8307	yes	N/A
P34388	RT09_CAEEL	No assigned EC number	0.3062	0.6307	0.8673	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	539
pfam00380	121	pfam00380, Ribosomal_S9, Ribosomal protein S9/S16	6e-49
COG0103	130	COG0103, RpsI, Ribosomal protein S9 [Translation,	1e-38
PRK00132	130	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	3e-38
CHL00079	130	CHL00079, rps9, ribosomal protein S9	3e-22
PRK00474	134	PRK00474, rps9p, 30S ribosomal protein S9P; Review	1e-14
TIGR03627	130	TIGR03627, arch_S9P, archaeal ribosomal protein S9	3e-14
PTZ00086	147	PTZ00086, PTZ00086, 40S ribosomal protein S16; Pro	2e-04
PLN00210	141	PLN00210, PLN00210, 40S ribosomal protein S16; Pro	6e-04

>gnl|CDD|201193 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16

 Score =  164 bits (418), Expect = 6e-49
 Identities = 63/121 (52%), Positives = 82/121 (67%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG+GKITIN K   +YFP+E  R +++ PL  T  L K DIV +V+ G
Sbjct: 3   RKTAVARVWL-KPGSGKITINGKPLEEYFPNETLRMKILEPLELTGTLGKFDIVVTVKGG 61

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR  I+  L  + +PE+R  ++ AGLLTRD RRKERKK G  +ARK+  + K
Sbjct: 62  GISGQAGAIRLAIARALVAY-DPELRPELKKAGLLTRDPRRKERKKYGLKKARKRPQFSK 120

Query: 539 R 539
           R
Sbjct: 121 R 121

This family includes small ribosomal subunit S9 from prokaryotes and S16 from eukaryotes. Length = 121

>gnl|CDD|223181 COG0103, RpsI, Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]

 Score =  137 bits (348), Expect = 1e-38
 Identities = 59/121 (48%), Positives = 78/121 (64%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V +  PG GKIT+N +    YFP E  R ++M PL+ T  + K DI  +V+ G
Sbjct: 12  RKSAVARVRLV-PGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKFDIDVTVKGG 70

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GI+  L  + +PE+R  ++ AGLLTRD RR ERKK G  +AR++  + K
Sbjct: 71  GISGQAGAIRHGIARALVEY-DPELRPALKKAGLLTRDPRRVERKKYGLKKARRRPQFSK 129

Query: 539 R 539
           R
Sbjct: 130 R 130

Length = 130

>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed

 Score =  136 bits (345), Expect = 3e-38
 Identities = 54/121 (44%), Positives = 73/121 (60%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V +  PG+GKIT+N +   +YFP E  R  +  PL  T+   K D+  +V+ G
Sbjct: 12  RKTAVARVRLK-PGSGKITVNGRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVTVKGG 70

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GI+  L    +P++R  ++ AG LTRD R  ERKK G  +AR+   + K
Sbjct: 71  GISGQAGAIRHGIARAL-LEYDPDLRPALKKAGFLTRDARMVERKKYGLKKARRAPQFSK 129

Query: 539 R 539
           R
Sbjct: 130 R 130

Length = 130

>gnl|CDD|214357 CHL00079, rps9, ribosomal protein S9

 Score = 92.3 bits (230), Expect = 3e-22
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFP-DENDRQQLMFPLIFTDMLNKVDIVASVRE 477
           RK A A V +  PG+G+I IN K   +Y   + N    +  PL    + NK DI+  V+ 
Sbjct: 11  RKTAVAQVRLV-PGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGLENKYDIIVKVKG 69

Query: 478 GGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWK 537
           GG +GQA AIR G++  L     PE R+ ++  G LTRD R KERKK G  +ARK   + 
Sbjct: 70  GGLTGQAEAIRLGLARALCKI-NPENRKSLKKEGFLTRDARIKERKKYGLKKARKAPQFS 128

Query: 538 KR 539
           KR
Sbjct: 129 KR 130

Length = 130

>gnl|CDD|179041 PRK00474, rps9p, 30S ribosomal protein S9P; Reviewed

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIF--TDMLNKVDIVASVR 476
           RK A A  T+ + G G++ IN     +    E  R ++M PLI    D+ +KVDI  +V 
Sbjct: 11  RKTAIARATI-REGKGRVRINGVP-LELIEPELARLKIMEPLILAGEDLRSKVDIDVNVE 68

Query: 477 EGGHSGQAGAIRWGISWGLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQARARKK 533
            GG  GQA A R  I+ GL  +  + E+++        LL  D RR E KK G   AR K
Sbjct: 69  GGGIMGQADAARTAIARGLVEWTGDMELKDAFLAYDRTLLVGDPRRTEPKKWGGKGARAK 128

Query: 534 F 534
            
Sbjct: 129 R 129

Length = 134

>gnl|CDD|132666 TIGR03627, arch_S9P, archaeal ribosomal protein S9P

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 49/120 (40%), Positives = 62/120 (51%), Gaps = 6/120 (5%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFT-DMLNKVDIVASVRE 477
           RK A A  T+   G G++ IN     + +P E  R ++M PLI   D+  +VDI   V  
Sbjct: 8   RKTAIARATIR-EGKGRVRIN-GVPVELYPPELARLKIMEPLILAGDIAKEVDIDVKVSG 65

Query: 478 GGHSGQAGAIRWGISWGLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQARARKKF 534
           GG  GQA A R  I+ GL  F  + E+R+  R     LL  D RRKE KKPG   AR K 
Sbjct: 66  GGIMGQADAARTAIARGLVEFTGDKELRDAFRAYDRTLLVNDPRRKEPKKPGGRGARAKR 125

This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 130

>gnl|CDD|185437 PTZ00086, PTZ00086, 40S ribosomal protein S16; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 14/129 (10%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIF--TDMLNKVDIVASVR 476
           +K A A   V   G G I +N     D    E  R ++  PL+    +  +++DI   VR
Sbjct: 17  KKTAVAVALV-TKGKGLIRVNGVP-LDLINPETLRAKVFEPLLLVGKERFSRLDIRVRVR 74

Query: 477 EGGHSGQAGAIRWGISWGL----RNFVEPEMRERMRLA------GLLTRDFRRKERKKPG 526
            GG   QA AIR  I+ GL    + +V+   +  ++         LL  D RR E KK G
Sbjct: 75  GGGQVAQAYAIRQAIAKGLVAYYQKYVDEATKAELKDKLLAYDRSLLVADPRRCEPKKFG 134

Query: 527 QARARKKFT 535
              AR +F 
Sbjct: 135 GPGARARFQ 143

Length = 147

>gnl|CDD|177799 PLN00210, PLN00210, 40S ribosomal protein S16; Provisional

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 22/132 (16%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLI------FTDMLNKVDIV 472
           +K A A VT  + G G I IN     +    E  R +   P++      F      VD+ 
Sbjct: 11  KKTAVA-VTYCKRGRGLIKINGCP-IELVQPEILRFKAFEPILLLGRHRFAG----VDMR 64

Query: 473 ASVREGGHSGQAGAIRWGISWGL----RNFVEPEMRERMRLA------GLLTRDFRRKER 522
             V+ GGH+ Q  AIR  I+  L    + +V+ + ++ ++         LL  D RR E 
Sbjct: 65  IRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVADPRRCEP 124

Query: 523 KKPGQARARKKF 534
           KK G   AR +F
Sbjct: 125 KKFGGRGARARF 136

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	539
KOG1697|consensus	275		100.0
PRK00132	130	rpsI 30S ribosomal protein S9; Reviewed	100.0
CHL00079	130	rps9 ribosomal protein S9	100.0
COG0103	130	RpsI Ribosomal protein S9 [Translation, ribosomal	100.0
PF00380	121	Ribosomal_S9: Ribosomal protein S9/S16; InterPro:	100.0
TIGR03627	130	arch_S9P archaeal ribosomal protein S9P. This mode	100.0
PRK00474	134	rps9p 30S ribosomal protein S9P; Reviewed	100.0
PTZ00086	147	40S ribosomal protein S16; Provisional	100.0
PLN00210	141	40S ribosomal protein S16; Provisional	100.0
KOG1753|consensus	145		99.94
KOG1697|consensus	275		99.59

>KOG1697|consensus

Probab=100.00  E-value=1.3e-70  Score=539.07  Aligned_cols=255  Identities=45%  Similarity=0.744  Sum_probs=236.9

Q ss_pred             CcccccchhhHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHHhhhCCCCCCCCHHHHHHHHHhhcCCCCCCccCCCCC
Q psy6189         185 PHHDMFDRTKVSKAMQAYLKRAEDYTSFMEGEKHSYEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLYSKKARPYM  264 (539)
Q Consensus       185 ~~~~~~~~~~~skAm~~yl~~~~~~~~fm~~q~~ey~iGKRhLAnMMGeDpe~fTqedIdrAI~YLfPSgL~~k~ARP~M  264 (539)
                      +-.+-++..++.|||..|+++..+||+||++|++|||+||             |||||||+||.|||||||||+.|||.|
T Consensus        21 ~~~~~~~~~~i~k~~~~y~k~~~~~d~~~~~~~~efe~gK-------------~~qedid~ai~~l~psg~~d~~arp~m   87 (275)
T KOG1697|consen   21 ASDSDTSVRKIPKALETYLKRSTQHDAFMKKQRLEFEIGK-------------LTQEDIDRAISYLFPSGLFDPNARPVM   87 (275)
T ss_pred             cccccchhhhhhhhhhhhccCcchHHHHHHHHHHHHhhcc-------------CcchhhHHHHHHhccccccCccccccc
Confidence            3334567789999999999999999999999999999999             999999999999999999999999999


Q ss_pred             CCCCccCCCCcccccCCCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhhhcccCCCCccH
Q psy6189         265 KHPEEVFPPKKDAEFDNLGRPYHFLFYTGKPNLYELFHNANVLIRKLNKMEDEDLRNPKQTQASEASRELYLTNTEWMSQ  344 (539)
Q Consensus       265 K~PeeifP~~k~~q~de~GRP~h~lFYTGkP~YydlLhdi~~kL~~L~k~ed~l~~k~l~p~~~~~~~~~~l~~s~Wlsk  344 (539)
                                 +.||||+             +||.+||+++.+.+.+.++++                            
T Consensus        88 -----------~~~~~et-------------~~~~ll~di~~~~~~~~~~~~----------------------------  115 (275)
T KOG1697|consen   88 -----------AFQFDET-------------KYYQLLHDIGVLTNKLAKLYS----------------------------  115 (275)
T ss_pred             -----------cccCCcc-------------hHHHHHHHHHhhhhhhhhhhh----------------------------
Confidence                       8999997             999999999998887777742                            


Q ss_pred             HHHHHHhCCCCChHHHHHHHHHHHHHHcCCCchHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCeeeecccccCcceEE
Q psy6189         345 EALERITVEPITKPEYQQFVAVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVTTKDCPRKCARA  424 (539)
Q Consensus       345 eele~~l~E~L~~~~Y~~~i~lL~RL~~ip~~~~~~e~l~~frk~~~~~s~~~~~~p~qlDe~Gra~vs~~~GkRKtA~A  424 (539)
                                          ..+++|.+.|++.++++|+++|++++...++    +++.+      +   ++|+||+|+|
T Consensus       116 --------------------~s~~~l~s~p~~~~e~~f~~~~~k~~~~~g~----~~~~~------~---~~g~rK~a~A  162 (275)
T KOG1697|consen  116 --------------------ISIEHLLSSPYSAIEEKFLKRFRKPLDESGK----PEVRI------I---AVGRRKCARA  162 (275)
T ss_pred             --------------------hHHHHHhhCchhHHHHHHHHHHHhcccccCC----Cceee------e---eccceeccee
Confidence                                6788999999999999999999999866553    22223      2   6789999999


Q ss_pred             EEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHHHHccCChhhH
Q psy6189         425 DVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLRNFVEPEMR  504 (539)
Q Consensus       425 ~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv~~v~p~~k  504 (539)
                      +|+| .+|+|+|.|||+++.+||+..++|+++|+||.+++.+|+|||+|+|+|||.||||+||+||||+||+.| +|+++
T Consensus       163 ~V~v-~~GtGk~~vNg~~~~~yF~~~~~Re~ll~Pl~~~~~lg~~dv~atv~GGG~sgqagAI~~gia~aL~~~-~p~~~  240 (275)
T KOG1697|consen  163 TVKV-QPGTGKFDVNGRDLDVYFQHLQHREQLLYPLAVSESLGKYDVTATVSGGGPSGQAGAIRLGIAKALASF-EPDLI  240 (275)
T ss_pred             EEEE-ecCceeEEecchhHHhHhccchhHHHHhhhHHHhccccceeEEEEecCCCccchhHHHHHHHHHHHHhc-CHHHh
Confidence            9999 599999999999998899999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         505 ERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       505 ~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      +.||++||||+|+|+|||||+|++||||+|||+||
T Consensus       241 ~~lr~aGlLTrD~R~vERKK~gq~kARkk~tW~KR  275 (275)
T KOG1697|consen  241 EPLRLAGLLTRDPRVVERKKPGQPKARKKPTWKKR  275 (275)
T ss_pred             hHHHhcCccccchHhhhhccCCccccccccccccC
Confidence            99999999999999999999999999999999998

>PRK00132 rpsI 30S ribosomal protein S9; Reviewed

Probab=100.00  E-value=8.2e-47  Score=343.55  Aligned_cols=123  Identities=44%  Similarity=0.666  Sum_probs=121.2

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWG  494 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArA  494 (539)
                      ++||||+|+|+||+. +|+|+|+|||+|+.+||++..+|++|++||.+++.+++|||+|+|+|||.||||+|||||||||
T Consensus         8 ~~GrRK~a~A~v~l~-~G~G~i~INg~~~~~yf~~~~~r~~i~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~aiara   86 (130)
T PRK00132          8 GTGRRKTAVARVRLK-PGSGKITVNGRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVTVKGGGISGQAGAIRHGIARA   86 (130)
T ss_pred             EEeeCCCeEEEEEEE-cCccEEEECCEeHHHHcCCHHHHHHHHHHHHHhCccCceeEEEEEEcCCHHHHHHHHHHHHHHH
Confidence            689999999999996 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         495 LRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       495 Lv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||.| +|++++.|+.+||||+|+|+|||||||++||||++|||||
T Consensus        87 Lv~~-~~~~r~~Lk~~glLtrD~R~~ErKK~G~~kARk~~q~skR  130 (130)
T PRK00132         87 LLEY-DPDLRPALKKAGFLTRDARMVERKKYGLKKARRAPQFSKR  130 (130)
T ss_pred             HHHH-CHHHHHHHHHCCCcccCchhhccCcCCCcccccccccccC
Confidence            9999 9999999999999999999999999999999999999998

>CHL00079 rps9 ribosomal protein S9

Probab=100.00  E-value=1.1e-46  Score=342.74  Aligned_cols=123  Identities=41%  Similarity=0.576  Sum_probs=119.7

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCC-hHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPD-ENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISW  493 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~-~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIAr  493 (539)
                      ++|+||+|+|+||+. +|+|+|+|||+++.+||+. ...+++|++||.+++.+++|||+|+|+|||.||||+||||||||
T Consensus         7 ~~GrRKta~Arv~l~-~G~G~i~INg~~~~~yf~~~~~~~~~v~~Pl~~~~~~~~~Di~i~V~GGG~sgQa~Air~aIar   85 (130)
T CHL00079          7 GTGRRKTAVAQVRLV-PGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGLENKYDIIVKVKGGGLTGQAEAIRLGLAR   85 (130)
T ss_pred             EEeeCCCeEEEEEEE-cCCcEEEECCCcHHHHCCcCHHHHHHHHHHHHHhCcCCceeEEEEEEcCChhHHHHHHHHHHHH
Confidence            689999999999996 9999999999999999985 66789999999999999999999999999999999999999999


Q ss_pred             HHHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         494 GLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       494 ALv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||++| +|++++.|+++||||+|+|+|||||||++||||+||||||
T Consensus        86 aLv~~-~~~~k~~Lk~~glLtrD~R~~ERKK~G~~kARk~~Q~SkR  130 (130)
T CHL00079         86 ALCKI-NPENRKSLKKEGFLTRDARIKERKKYGLKKARKAPQFSKR  130 (130)
T ss_pred             HHHHH-CHHHHHHHHHcCCcccCCcccccCcCCCcccccccccCCC
Confidence            99999 9999999999999999999999999999999999999998

>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-46  Score=338.68  Aligned_cols=124  Identities=48%  Similarity=0.713  Sum_probs=121.7

Q ss_pred             cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189         414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISW  493 (539)
Q Consensus       414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIAr  493 (539)
                      .++||||+|+|+|+|+ +|+|+|+|||+|+.+||++...|.+|++||.+++..++|||+|+|+|||.||||+||||||||
T Consensus         7 ~~tGkRK~AvArv~l~-~g~G~i~vNg~~~e~yf~~e~~r~~i~~Pl~l~~~~~~~Di~v~V~GGG~~GQA~AiR~gIaR   85 (130)
T COG0103           7 YTTGKRKSAVARVRLV-PGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKFDIDVTVKGGGISGQAGAIRHGIAR   85 (130)
T ss_pred             eeeccccceEEEEEEE-cCCcEEEECCcCHHHhcchHHHHHHHhhhHHHhCccccccEEEEEecCCchHHHHHHHHHHHH
Confidence            4789999999999997 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         494 GLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       494 ALv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||+.| +|++++.|+++||||+|+|+|||||+|++|||+++|||||
T Consensus        86 AL~~~-~~~lr~~lk~~g~LtrD~R~~ErKK~G~~kARr~~Q~SkR  130 (130)
T COG0103          86 ALVEY-DPELRPALKKAGLLTRDPRRVERKKYGLKKARRRPQFSKR  130 (130)
T ss_pred             HHHHH-CHHHHHHHHHCCCcccCccccccccccccccccccccccC
Confidence            99999 9999999999999999999999999999999999999998

>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.7e-46  Score=335.02  Aligned_cols=121  Identities=51%  Similarity=0.774  Sum_probs=114.3

Q ss_pred             ccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHHHH
Q psy6189         417 CPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWGLR  496 (539)
Q Consensus       417 GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArALv  496 (539)
                      |+||||+|+|||. +|+|+|.|||+|+.+||++..+|++|++||.+++.+++|||+|+|+|||.||||+||||||||||+
T Consensus         1 GkRK~a~A~v~l~-~G~G~i~INg~~l~~yf~~~~~r~~il~Pl~~~~~~~~~di~~~V~GGG~~gQa~Air~aiaraL~   79 (121)
T PF00380_consen    1 GKRKTAIARVWLK-PGSGKIRINGKPLEEYFPNPYLREKILEPLELTGTLGKFDIFANVKGGGISGQAGAIRLAIARALV   79 (121)
T ss_dssp             EEETTEEEEEEEE-ESSSEEEETTSEHHHHSSSTTTGCCTTHHHHCTTTSTSEEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEEEE-eCceEEEECCEEHHHhcCcHhHHHHHHHHHHHhCcCCeeeEEEEEecCcEeeehHHHHHHHHHHHH
Confidence            8999999999996 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         497 NFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       497 ~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      .| +|+.++.|++.||||+|+|+|||||||++||||+||||||
T Consensus        80 ~~-~~~~~~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  121 (121)
T PF00380_consen   80 KF-NPSLKPELKKAGLLTRDPRRVERKKPGRKKARKKPQWSKR  121 (121)
T ss_dssp             HH-HTTCHHHHCTTTTTS-BS-S-SS-CTTSSSSSBSSCTST-
T ss_pred             HH-hHHHHHHHhhCCceeecchhccccCCCCCCcccccccccC
Confidence            99 8999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S9 is one of the proteins from the small ribosomal subunit. It belongs to the S9P family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial; algal chloroplast; cyanelle and archaeal S9 proteins; and mammalian; plant; and yeast mitochondrial ribosomal S9 proteins. These proteins adopt a beta-alpha-beta fold similar to that found in numerous RNA/DNA-binding proteins, as well as in kinases from the GHMP kinase family [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V46_I 3T1H_I 3MR8_I 3F1G_I 3D5C_I 3D5A_I 2WDG_I 3MS0_I 2WDM_I 2J02_I ....

>TIGR03627 arch_S9P archaeal ribosomal protein S9P

Probab=100.00  E-value=5.7e-45  Score=331.49  Aligned_cols=123  Identities=40%  Similarity=0.493  Sum_probs=117.4

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc-cCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD-MLNKVDIVASVREGGHSGQAGAIRWGISW  493 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~-~~~k~DI~a~V~GGG~sGQA~AIrlAIAr  493 (539)
                      ++|+||+|+|+|+|. +|+|+|+|||+++.+|| +...|+.|++||.+++ .+++|||+|+|+|||.||||+||||||||
T Consensus         4 ~~GrRKta~A~v~l~-~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~Dv~i~V~GGG~sgQa~Air~aIar   81 (130)
T TIGR03627         4 TSGKRKTAIARATIR-EGKGRVRINGVPVELYP-PELARLKIMEPLILAGDIAKEVDIDVKVSGGGIMGQADAARTAIAR   81 (130)
T ss_pred             EEeeCCCeEEEEEEE-cCceEEEECCEeHHHhC-CHHHHHHHHHHHHHHhccccCccEEEEEEcCChhHHHHHHHHHHHH
Confidence            689999999999996 99999999999996665 7889999999999997 89999999999999999999999999999


Q ss_pred             HHHccC-ChhhHHHHHH--CCCcccCCCccccCCCCcccccccccccCC
Q psy6189         494 GLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       494 ALv~~v-~p~~k~~Lr~--agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||+.|. +|++++.|+.  +||||+|+|+|||||||++||||+||||||
T Consensus        82 aL~~~~~~~~~r~~lk~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR  130 (130)
T TIGR03627        82 GLVEFTGDKELRDAFRAYDRTLLVNDPRRKEPKKPGGRGARAKRQKSYR  130 (130)
T ss_pred             HHHHhccCHHHHHHHHHhcCCCccCCchhhccCcCCCccccccccccCC
Confidence            999985 6899999998  899999999999999999999999999998

This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.

>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed

Probab=100.00  E-value=9.5e-45  Score=331.56  Aligned_cols=124  Identities=35%  Similarity=0.392  Sum_probs=117.9

Q ss_pred             cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHH
Q psy6189         414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGI  491 (539)
Q Consensus       414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAI  491 (539)
                      .++|+||+|+|+|++. +|+|+|+|||+|+.+|| +...|++|++||.+++  .+++|||+|+|+|||.||||+||||||
T Consensus         6 ~~~GrRKta~A~v~l~-~G~G~i~VNg~~~~~y~-~~~~r~~i~~Pl~~~~~~~~~~~di~i~V~GGG~sgQa~Air~aI   83 (134)
T PRK00474          6 ITSGKRKTAIARATIR-EGKGRVRINGVPLELIE-PELARLKIMEPLILAGEDLRSKVDIDVNVEGGGIMGQADAARTAI   83 (134)
T ss_pred             EEEeeCCCeEEEEEEE-cCceEEEECCEeHHHHC-CHHHHHHHHHHHHHhCccccCCccEEEEEEcCChhHHHHHHHHHH
Confidence            3689999999999996 99999999999996665 7899999999999999  999999999999999999999999999


Q ss_pred             HHHHHccC-ChhhHHHHHH--CCCcccCCCccccCCCCcccccccccccCC
Q psy6189         492 SWGLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       492 ArALv~~v-~p~~k~~Lr~--agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      |||||+|+ +|++++.|+.  +||||+|||+|||||||++||||+||||||
T Consensus        84 araL~~~~~~~~~r~~lk~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR  134 (134)
T PRK00474         84 ARGLVEWTGDMELKDAFLAYDRTLLVGDPRRTEPKKWGGKGARAKRQKSYR  134 (134)
T ss_pred             HHHHHHhccCHHHHHHHHHhcCCCcccCchhhccCcCCCccccccccccCC
Confidence            99999986 6899999998  899999999999999999999999999998

>PTZ00086 40S ribosomal protein S16; Provisional

Probab=100.00  E-value=4.4e-44  Score=331.45  Aligned_cols=123  Identities=33%  Similarity=0.376  Sum_probs=117.3

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhcc--CCcccEEEEeecCCcccHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDM--LNKVDIVASVREGGHSGQAGAIRWGIS  492 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~--~~k~DI~a~V~GGG~sGQA~AIrlAIA  492 (539)
                      ++||||+|+|+|+|. +|+|+|+|||+|+.+||+ ...|++|++||.+++.  +++|||+|+|+|||.||||+|||||||
T Consensus        13 ~~GrRKtAiArv~l~-~G~G~i~INg~~l~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sgQA~Air~aIa   90 (147)
T PTZ00086         13 TFGKKKTAVAVALVT-KGKGLIRVNGVPLDLINP-ETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVAQAYAIRQAIA   90 (147)
T ss_pred             EeeecCCceEEEEEE-cCCceEEECCcCHHHhCc-HHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHHHHHHHHHHHH
Confidence            689999999999996 999999999999999998 7889999999999975  899999999999999999999999999


Q ss_pred             HHHHccC----ChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189         493 WGLRNFV----EPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       493 rALv~~v----~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||||.|.    +++.++.|+.+      ||||+|||+|||||||++||||+||||||
T Consensus        91 RAL~~~~~~~~~~~~r~~Lk~~~~~ydrglLtrD~R~~ERKK~G~~kARk~~Q~SkR  147 (147)
T PTZ00086         91 KGLVAYYQKYVDEATKAELKDKLLAYDRSLLVADPRRCEPKKFGGPGARARFQKSYR  147 (147)
T ss_pred             HHHHHHhcccCChHHHHHHHHHHhhccCCcccCCccccccCcCCCcccccccccccC
Confidence            9999983    67888999987      99999999999999999999999999998

>PLN00210 40S ribosomal protein S16; Provisional

Probab=100.00  E-value=5.6e-44  Score=328.87  Aligned_cols=124  Identities=30%  Similarity=0.292  Sum_probs=115.0

Q ss_pred             cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHH
Q psy6189         414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGI  491 (539)
Q Consensus       414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAI  491 (539)
                      .++||||+|+|+|++. +|+|+|+|||+|+.+||+ ...|++|++||.+++  .+++|||+|+|+|||.||||+||||||
T Consensus         6 ~~~GrRKta~Arv~~~-~G~G~i~INg~~~~~y~~-~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Air~ai   83 (141)
T PLN00210          6 QCFGRKKTAVAVTYCK-RGRGLIKINGCPIELVQP-EILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSI   83 (141)
T ss_pred             eeeccCCCceEEEEEE-CCCceEEECCCcHHHHCC-HHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHHHHHH
Confidence            3689999999999995 999999999999977766 788999999999998  469999999999999999999999999


Q ss_pred             HHHHHccC----ChhhHHHHHH------CCCcccCCCccccCCCCcccccccccccCC
Q psy6189         492 SWGLRNFV----EPEMRERMRL------AGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       492 ArALv~~v----~p~~k~~Lr~------agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||||+.|.    +++.++.|++      +||||+|||+|||||||++||||+||||||
T Consensus        84 araL~~~~~~~~~~~~r~~Lk~~l~~yd~glLtrD~R~~ERKK~G~~kARk~~Q~Skr  141 (141)
T PLN00210         84 AKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR  141 (141)
T ss_pred             HHHHHHhcccccChhHHHHHHHHHHhccCCCccCCchhhccCcCCccccccccccccC
Confidence            99999983    4477777777      999999999999999999999999999998

>KOG1753|consensus

Probab=99.94  E-value=1e-27  Score=216.69  Aligned_cols=123  Identities=30%  Similarity=0.381  Sum_probs=115.3

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGIS  492 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAIA  492 (539)
                      .+|++|+|+|.+.+ +.|+|.|.|||+|+ +.+++...|.++++|+.+++  .+..+||.|+|+|||.++|..|||++||
T Consensus        11 ~fG~KK~AtAva~c-k~G~glikvNg~pl-e~ie~~~L~~Kl~Epvlllgk~rfa~vdi~v~~~ggghvsqiyairqa~~   88 (145)
T KOG1753|consen   11 VFGRKKTATAVAHC-KHGSGLIKVNGRPL-ELIEPEILRYKLLEPVLLLGKERFAGVDIRVRVKGGGHVSQIYAIRQAIA   88 (145)
T ss_pred             eeccccceEEEEEe-ecCceEEEECCcch-HhccHHHHHHHHhhhHhhhhhhhhCCCceEEEEecCchHHHHHHHHHHhh
Confidence            47999999999998 69999999999999 99999999999999999995  7789999999999999999999999999


Q ss_pred             HHHHcc----CChhhHHHHHH------CCCcccCCCccccCCCCcccccccccccCC
Q psy6189         493 WGLRNF----VEPEMRERMRL------AGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       493 rALv~~----v~p~~k~~Lr~------agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      +||++|    +|+..++.+++      +.||+.|||++|+||+|++|||+++|.|+|
T Consensus        89 kalvayyqkyvDE~skkeiKd~li~yDrtlLVADprr~esKKFGGpGAraryQksyr  145 (145)
T KOG1753|consen   89 KALVAYYQKYVDEQSKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR  145 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEcCcccccccccCCcchHHHhhhhcC
Confidence            999996    57777777775      899999999999999999999999999987

>KOG1697|consensus

Probab=99.59  E-value=8.3e-16  Score=152.76  Aligned_cols=82  Identities=39%  Similarity=0.715  Sum_probs=78.5

Q ss_pred             cccCCCCCCCccccchhhHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhhHHHhhhCCCCCCCCHHHHHHHHHhhcCCCCC
Q psy6189          39 ETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDEAIAYLMPSGLY  118 (539)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~gkr~la~mmg~d~~~f~~~di~~ai~yl~ps~l~  118 (539)
                      .++....++..+.+++.+|+||+..|+++...|+.||++|+.|||+||             |||||||+||.||||||||
T Consensus        13 ~s~~~~~q~~~~~~~~~~i~k~~~~y~k~~~~~d~~~~~~~~efe~gK-------------~~qedid~ai~~l~psg~~   79 (275)
T KOG1697|consen   13 MSTAVPAQASDSDTSVRKIPKALETYLKRSTQHDAFMKKQRLEFEIGK-------------LTQEDIDRAISYLFPSGLF   79 (275)
T ss_pred             CccCCccccccccchhhhhhhhhhhhccCcchHHHHHHHHHHHHhhcc-------------CcchhhHHHHHHhcccccc
Confidence            366788889999999999999999999999999999999999999999             9999999999999999999


Q ss_pred             CCCCCCCCCCCCccCCCCcccccCCC
Q psy6189         119 SKKARPYMKHPEEVFPPKKDAEFDNL  144 (539)
Q Consensus       119 ~~~arp~m~~p~~~~p~~~~~~~d~~  144 (539)
                      |+.|||.|           +.+||++
T Consensus        80 d~~arp~m-----------~~~~~et   94 (275)
T KOG1697|consen   80 DPNARPVM-----------AFQFDET   94 (275)
T ss_pred             Cccccccc-----------cccCCcc
Confidence            99999999           8899998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	539
1vs5_I	130	Crystal Structure Of The Bacterial Ribosome From Es		2e-18
2gy9_I	126	Structure Of The 30s Subunit Of A Pre-Translocation		8e-18
3fih_I	127	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		9e-18
1p6g_I	129	Real Space Refined Coordinates Of The 30s Subunit F		1e-17
1fjg_I	128	Structure Of The Thermus Thermophilus 30s Ribosomal		6e-13
1pns_I	127	Crystal Structure Of A Streptomycin Dependent Ribos		6e-13
2hgi_L	128	Crystal Structure Of The 70s Thermus Thermophilus R		8e-13
3bbn_I	197	Homology Model For The Spinach Chloroplast 30s Subu		6e-11

>pdb|1VS5|I Chain I, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 130

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK + A V + +PG GKI IN++    YF  E  R  +  PL   DM+ K+D+  +V+ G
Sbjct: 12  RKSSAARVFI-KPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGG 70
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GI+  L  + E  +R  +R AG +TRD R+ ERKK G  +AR++  + K
Sbjct: 71  GISGQAGAIRHGITRALMEYDES-LRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSK 129
Query: 539 R 539
           R
Sbjct: 130 R 130

>pdb|2GY9|I Chain I, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 126

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK + A V + +PG GKI IN++    YF  E  R  +  PL   DM+ K+D+  +V+ G
Sbjct: 8   RKSSAARVFI-KPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGG 66
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GI+  L  + E  +R  +R AG +TRD R+ ERKK G  +AR++  + K
Sbjct: 67  GISGQAGAIRHGITRALMEYDE-SLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSK 125
Query: 539 R 539
           R
Sbjct: 126 R 126

>pdb|3FIH|I Chain I, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 127

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK + A V + +PG GKI IN++    YF  E  R  +  PL   DM+ K+D+  +V+ G
Sbjct: 9   RKSSAARVFI-KPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGG 67
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GI+  L  + E  +R  +R AG +TRD R+ ERKK G  +AR++  + K
Sbjct: 68  GISGQAGAIRHGITRALMEYDE-SLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSK 126
Query: 539 R 539
           R
Sbjct: 127 R 127

>pdb|1P6G|I Chain I, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 129

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK + A V + +PG GKI IN++    YF  E  R  +  PL   DM+ K+D+  +V+ G
Sbjct: 11  RKSSAARVFI-KPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGG 69
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GI+  L  + E  +R  +R AG +TRD R+ ERKK G  +AR++  + K
Sbjct: 70  GISGQAGAIRHGITRALMEYDE-SLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSK 128
Query: 539 R 539
           R
Sbjct: 129 R 129

>pdb|1FJG|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 128

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG GK+T+N + + +YF         + PL   D L + D   +VR G
Sbjct: 10  RKEAVARVFL-RPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGG 68
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQ  AI+ GI+  L  +  P+ R +++  G LTRD R  ERKK G+ +AR+   + K
Sbjct: 69  GKSGQIDAIKLGIARALVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSK 127
Query: 539 R 539
           R
Sbjct: 128 R 128

>pdb|1PNS|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 127

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG GK+T+N + + +YF         + PL   D L + D   +VR G
Sbjct: 9   RKEAVARVFL-RPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGG 67
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQ  AI+ GI+  L  +  P+ R +++  G LTRD R  ERKK G+ +AR+   + K
Sbjct: 68  GKSGQIDAIKLGIARALVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSK 126
Query: 539 R 539
           R
Sbjct: 127 R 127

>pdb|2HGI|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgj. Length = 128

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG GK+T+N + + +YF         + PL   D L   D   +VR G
Sbjct: 10  RKEAVARVFL-RPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGHFDAYITVRGG 68
Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQ  AI+ GI+  L  +  P+ R +++  G LTRD R  ERKK G+ +AR+   + K
Sbjct: 69  GKSGQIDAIKLGIARALVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSK 127
Query: 539 R 539
           R
Sbjct: 128 R 128

>pdb|3BBN|I Chain I, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 197

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDEND-RQQLMFPLIFTDMLNKVDIVASVRE 477
           RKCA A V V Q GTGK  IN +   +Y        Q +  PL         D+      
Sbjct: 78  RKCAIARV-VLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHG 136
Query: 478 GGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWK 537
           GG SGQA AI  G++  L   V    R  ++  GLLTRD R  ERKKPG  +ARK   + 
Sbjct: 137 GGLSGQAQAISLGVARALLK-VSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFS 195
Query: 538 KR 539
           KR
Sbjct: 196 KR 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	539
2vqe_I	128	30S ribosomal protein S9, 30S ribosomal protein S6	6e-42
3r8n_I	127	30S ribosomal protein S9; protein biosynthesis, RN	7e-42
3bbn_I	197	Ribosomal protein S9; small ribosomal subunit, spi	4e-38
3iz6_I	149	40S ribosomal protein S16 (S9P); eukaryotic riboso	2e-35
2zkq_i	146	40S ribosomal protein S16E; protein-RNA complex, 4	9e-35
3u5c_Q	143	RP61R, 40S ribosomal protein S16-A; translation, r	2e-34
2xzm_I	145	RPS16E; ribosome, translation; 3.93A {Tetrahymena	7e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Length = 128

 Score =  145 bits (369), Expect = 6e-42
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG GK+T+N + + +YF         + PL   D L + D   +VR G
Sbjct: 10  RKEAVARVFL-RPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGG 68

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQ  AI+ GI+  L  +  P+ R +++  G LTRD R  ERKK G+ +AR+   + K
Sbjct: 69  GKSGQIDAIKLGIARALVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSK 127

Query: 539 R 539
           R
Sbjct: 128 R 128

>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 197

 Score =  137 bits (347), Expect = 4e-38
 Identities = 47/122 (38%), Positives = 59/122 (48%), Gaps = 3/122 (2%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFP-DENDRQQLMFPLIFTDMLNKVDIVASVRE 477
           RKCA A V + Q GTGK  IN +   +Y   +    Q +  PL         D+      
Sbjct: 78  RKCAIARVVL-QEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHG 136

Query: 478 GGHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWK 537
           GG SGQA AI  G++  L        R  ++  GLLTRD R  ERKKPG  +ARK   + 
Sbjct: 137 GGLSGQAQAISLGVARALLKV-SASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFS 195

Query: 538 KR 539
           KR
Sbjct: 196 KR 197

>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 149

 Score =  128 bits (324), Expect = 2e-35
 Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 14/133 (10%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFT--DMLNKVDIVASVR 476
           +K A A     +PG G I +N     +    E  R +   P++         +D+   VR
Sbjct: 19  KKTAVAVSYC-KPGRGLIKVN-GVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVR 76

Query: 477 EGGHSGQAGAIRWGISWGLRNFVEPEMRERMR----------LAGLLTRDFRRKERKKPG 526
            GG + Q  AIR  I+  L  + +  + E  +             LL  D RR E KK G
Sbjct: 77  GGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFG 136

Query: 527 QARARKKFTWKKR 539
              AR +F    R
Sbjct: 137 GRGARARFQKSYR 149

>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 146

 Score =  126 bits (320), Expect = 9e-35
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLM--FPLIFTDMLNKVDIVASVR 476
           +K A A     + G G I +N +      P    + +L+    L+  +    VDI   V+
Sbjct: 16  KKTATAVAHC-KRGNGLIKVNGRPLEMIEP-RTLQYKLLEPVLLLGKERFAGVDIRVRVK 73

Query: 477 EGGHSGQAGAIRWGISWGLRNFVEPEMRERMR----------LAGLLTRDFRRKERKKPG 526
            GGH  Q  AIR  IS  L  + +  + E  +             LL  D RR E KK G
Sbjct: 74  GGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFG 133

Query: 527 QARARKKFTWKKR 539
              AR ++    R
Sbjct: 134 GPGARARYQKSYR 146

>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Length = 143

 Score =  125 bits (317), Expect = 2e-34
 Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 14/133 (10%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFT--DMLNKVDIVASVR 476
           +K A A   V + G G I +N          E  R ++  PL+    D  + +DI   V 
Sbjct: 13  KKSATAVAHV-KAGKGLIKVNGSP-ITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVT 70

Query: 477 EGGHSGQAGAIRWGISWGL----RNFVEPEMRERMRLA------GLLTRDFRRKERKKPG 526
            GGH  Q  AIR  I+ GL    + +V+ + +  ++ A       LL  D RR E KK G
Sbjct: 71  GGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFG 130

Query: 527 QARARKKFTWKKR 539
              AR +F    R
Sbjct: 131 GKGARSRFQKSYR 143

>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Length = 145

 Score =  124 bits (313), Expect = 7e-34
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPL--IFTDMLNKVDIVASVR 476
           +K A A  +V +PG G + +N        P +  + ++  P+  +       +DI   VR
Sbjct: 15  KKNAVAVASV-RPGKGLLKVNGSPIDMINP-QILQAKIYEPILLLGQQKFANLDIRIRVR 72

Query: 477 EGGHSGQAGAIRWGISWGL----RNFVEPEMRERMR------LAGLLTRDFRRKERKKPG 526
             G++ Q  AIR  +S G+      +V+   +  ++         LL  D RR E KK G
Sbjct: 73  GSGYTSQVYAIRQALSKGIVAYHAKYVDENSKREIKEQLMQYDRSLLVADPRRMEPKKCG 132

Query: 527 QARARKKFTWKKR 539
              AR K     R
Sbjct: 133 GRGARSKMQKAYR 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 82/625 (13%), Positives = 166/625 (26%), Gaps = 199/625 (31%)

Query: 48  HHDMFDRTKVSKAMQAYLKRAEDYTNFMEGEKHSFEVGRRHLANMMGRDVETFTQKDIDE 107
           HH   D  +  +    Y         F +    +F+   + + +M  + +   ++++ID 
Sbjct: 3   HHHHMD-FETGEHQYQYKDILSV---FEDAFVDNFDC--KDVQDMP-KSI--LSKEEIDH 53

Query: 108 AI--------AYLMPSGLYSKKARPYMKHPEEVFPPKKDAEFDNLGRPYHFLFYTARFSS 159
            I           +   L SK+     K  EEV   + +         Y FL    +   
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RIN---------YKFLMSPIKTEQ 102

Query: 160 KTPNPPDKP---------NEPSELAKETANIPETPHHDMFDRTKVSKAMQAYLKRAEDYT 210
           + P+   +          N+    AK   +  + P+  +  R  + +     L+ A++  
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKL--RQALLE-----LRPAKNVL 154

Query: 211 SF-MEGEKHSYEVGRRHLANMMGRDVE------------TFTQKDIDEAIAYLMPSGLYS 257
              + G       G+  +A  +    +                 +  E +   M   L  
Sbjct: 155 IDGVLG------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLY 207

Query: 258 KKARPYMKHPEEVFPPKKDAE-----FDNL--GRPY-----------------HF----- 288
           +    +    +     K            L   +PY                  F     
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 289 -LFYT--------------------------GKPNLYELFHNANVLIRKLNKMEDEDLRN 321
            L  T                              +  L      L         +DL  
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYL-----DCRPQDL-- 318

Query: 322 PKQTQA---------SEASRELYLTNTEW--MSQEALERI------TVEP-ITKPEYQQF 363
           P++            +E+ R+   T   W  ++ + L  I       +EP   +  + + 
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 364 V----------AVMTRLVNHKYAYLHEEFIFKYRQPKVIKTMNFDPEEPQAGEDGVKFVT 413
                       +++ +            + K  +  +++     P+E       +    
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIYLEL 435

Query: 414 TKDCPRKCA--RADVTVYQ-----PGTGKITINEKHYFDYF-------PDENDRQQLMFP 459
                 + A  R+ V  Y           I      YF Y          E+  +  +F 
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLFR 494

Query: 460 LIFTD---MLNKVDIVASVREGGHSGQAGAIRWGISWGL------RNFVEPEMRERMRLA 510
           ++F D   +  K      +R   H   A      I   L      + ++     +  RL 
Sbjct: 495 MVFLDFRFLEQK------IR---HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 511 GLLTRDFRRKERKKPGQARARKKFT 535
             +  DF      K  +     K+T
Sbjct: 546 NAI-LDFLP----KIEENLICSKYT 565

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	539
2vqe_I	128	30S ribosomal protein S9, 30S ribosomal protein S6	100.0
3r8n_I	127	30S ribosomal protein S9; protein biosynthesis, RN	100.0
2xzm_I	145	RPS16E; ribosome, translation; 3.93A {Tetrahymena	100.0
2zkq_i	146	40S ribosomal protein S16E; protein-RNA complex, 4	100.0
3u5c_Q	143	RP61R, 40S ribosomal protein S16-A; translation, r	100.0
3bbn_I	197	Ribosomal protein S9; small ribosomal subunit, spi	100.0
3j20_K	135	30S ribosomal protein S9P; archaea, archaeal, KINK	100.0
3iz6_I	149	40S ribosomal protein S16 (S9P); eukaryotic riboso	100.0

>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...

Probab=100.00  E-value=1.9e-48  Score=351.80  Aligned_cols=123  Identities=38%  Similarity=0.584  Sum_probs=121.1

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWG  494 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArA  494 (539)
                      ++||||||+|+|+|. +|+|+|+|||+|+.+||++...|++|++||.+++.+++|||+|+|+|||.||||+|||||||||
T Consensus         6 ~~GrRKtavArv~l~-~G~G~i~VNg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~Di~v~V~GGG~sgQA~AiR~gIarA   84 (128)
T 2vqe_I            6 GTGRRKEAVARVFLR-PGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARA   84 (128)
T ss_dssp             ECCEETTEEEEEEEE-ESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             EeCcCCCEEEEEEEE-cCceEEEECCCcHHHHcCCHHHHHHHHhHHHHHcccCceeEEEEEEcCCeehHHHHHHHHHHHH
Confidence            689999999999995 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         495 LRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       495 Lv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||.| ||++++.|+++||||+|||+|||||||++||||+||||||
T Consensus        85 L~~~-~~~~r~~Lk~~glLtrD~R~~ErKK~G~~kARk~~Q~SkR  128 (128)
T 2vqe_I           85 LVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR  128 (128)
T ss_dssp             HHHH-CGGGHHHHTTTTTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred             HHHH-CHHHHHHHHHCCCccCCccccCcCcCCCcccccccccccC
Confidence            9999 9999999999999999999999999999999999999998

>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I

Probab=100.00  E-value=3.8e-46  Score=342.84  Aligned_cols=123  Identities=27%  Similarity=0.321  Sum_probs=119.4

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGIS  492 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAIA  492 (539)
                      ++||||||+|+|+|. +|+|+|+|||+|+. ||++...|++|++||.+++  .+++|||+|+|+|||.||||+|||||||
T Consensus        11 ~~GrRKtAvArv~l~-~G~G~i~VNg~~l~-yf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIA   88 (145)
T 2xzm_I           11 TFGRKKNAVAVASVR-PGKGLLKVNGSPID-MINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSGYTSQVYAIRQALS   88 (145)
T ss_dssp             EEEEETTEEEEEEEE-ESSCEEEESSSBGG-GCSSTTTHHHHHHHHHHHCHHHHHHEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred             EEeECCCEEEEEEEE-eCceEEEECCEeHH-HcCcHHHHHHHHHHHHHhChhhhCceeEEEEEEcCCeecHHHHHHHHHH
Confidence            789999999999996 99999999999995 9999999999999999998  8999999999999999999999999999


Q ss_pred             HHHHccC----ChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189         493 WGLRNFV----EPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       493 rALv~~v----~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||||.|+    ||++++.||++      ||||+|||+|||||||++||||+||||||
T Consensus        89 rAL~~~~~k~~d~~~r~~Lk~~l~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR  145 (145)
T 2xzm_I           89 KGIVAYHAKYVDENSKREIKEQLMQYDRSLLVADPRRMEPKKCGGRGARSKMQKAYR  145 (145)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHCSTTTSCBCCCCCCCCTTSSSSSCCCCCCCC
T ss_pred             HHHHHHhhhcCCHHHHHHHHHHHhhcCCCcCcCCCcccccCcCCCcccccccccccC
Confidence            9999984    89999999998      99999999999999999999999999998

>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.5e-46  Score=344.54  Aligned_cols=130  Identities=28%  Similarity=0.328  Sum_probs=120.6

Q ss_pred             CCCCCeeeecccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCccc
Q psy6189         405 GEDGVKFVTTKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSG  482 (539)
Q Consensus       405 De~Gra~vs~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sG  482 (539)
                      +..++.+   ++||||||+|+|+|. +|+|+|+|||+|+ +||++...|++|++||.+++  .+++|||+|+|+|||.||
T Consensus         5 ~~~~~~~---~~GrRKtAvArv~l~-~G~G~i~VNg~~l-eyf~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sg   79 (146)
T 2zkq_i            5 GPLQSVQ---VFGRKKTATAVAHCK-RGNGLIKVNGRPL-EMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVA   79 (146)
T ss_dssp             ---CCEE---ECCBCSSCEEEEEEE-ESSSCEEETTEEH-HHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHH
T ss_pred             CCCceEE---EEeeCCCeEEEEEEE-cCCeeEEEcCcCH-HHcCcHHHHHHHHHHHHHhCccccCceEEEEEEEcCCeeh
Confidence            3456666   789999999999995 9999999999999 99999999999999999998  579999999999999999


Q ss_pred             HHHHHHHHHHHHHHcc----CChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189         483 QAGAIRWGISWGLRNF----VEPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       483 QA~AIrlAIArALv~~----v~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||+|||||||||||.|    +||++++.|+++      ||||+|||+|||||||++||||+||||||
T Consensus        80 QA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~~~~~ydrglLtrD~R~~ErKK~G~~kARk~~Q~SkR  146 (146)
T 2zkq_i           80 QIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR  146 (146)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcccCCCcccccCcCCCcccccccccccC
Confidence            9999999999999998    489999999998      99999999999999999999999999998

>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*

Probab=100.00  E-value=1.3e-45  Score=338.90  Aligned_cols=124  Identities=32%  Similarity=0.403  Sum_probs=117.6

Q ss_pred             cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhcc--CCcccEEEEeecCCcccHHHHHHHHH
Q psy6189         414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDM--LNKVDIVASVREGGHSGQAGAIRWGI  491 (539)
Q Consensus       414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~--~~k~DI~a~V~GGG~sGQA~AIrlAI  491 (539)
                      .++||||||+|+|+|. +|+|+|+|||+|+.+||+. .+|++|++||.+++.  +++|||+|+|+|||.||||+||||||
T Consensus         8 ~~~GrRKtAvArv~l~-~G~G~i~VNg~~l~~y~~~-~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aI   85 (143)
T 3u5c_Q            8 QTFGKKKSATAVAHVK-AGKGLIKVNGSPITLVEPE-ILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAI   85 (143)
T ss_dssp             EEEECSTTCEEEEEEE-ECSCCEEETTEETTTCSSC-STHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEeccCcceEEEEEEE-eCceEEEECCCcHHHHChH-HHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHHHH
Confidence            3689999999999996 9999999999999888875 689999999999975  69999999999999999999999999


Q ss_pred             HHHHHcc----CChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189         492 SWGLRNF----VEPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       492 ArALv~~----v~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      |||||.|    +||+.++.||++      ||||+|||+|||||||++||||+||||||
T Consensus        86 ArAL~~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ErKK~G~~kARk~~Q~SkR  143 (143)
T 3u5c_Q           86 AKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR  143 (143)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCSSTTSCCCCCCCCCCSSSSSSSCCCCCCCC
T ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence            9999996    689999999987      99999999999999999999999999998

>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=8.9e-46  Score=353.21  Aligned_cols=123  Identities=37%  Similarity=0.483  Sum_probs=118.3

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCCh-HHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDE-NDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISW  493 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~-~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIAr  493 (539)
                      ++||||+|+|+|||+ +|+|+|+|||+|+.+||+.. ..+++|++||.+++.+++|||+|+|+|||.||||+||||||||
T Consensus        74 ~tGRRKtAvArV~l~-~G~G~I~VNg~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GGG~sGQA~AIR~gIAR  152 (197)
T 3bbn_I           74 GTGRRKCAIARVVLQ-EGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVAR  152 (197)
T ss_dssp             CCCEETTEEEEEEEE-ESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEeeCCceEEEEEEE-cCceeEEECCCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecCCeehHHHHHHHHHHH
Confidence            789999999999996 99999999999999999754 4457999999999999999999999999999999999999999


Q ss_pred             HHHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         494 GLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       494 ALv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      |||.| +|++++.|+++||||+|+|+|||||||++||||+||||||
T Consensus       153 ALv~~-~~~~r~~LK~~GlLTrD~R~~ERKK~G~kkARk~~Q~SKR  197 (197)
T 3bbn_I          153 ALLKV-SASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFSKR  197 (197)
T ss_dssp             HTTTS-CGGGSHHHHTTTCSSCCCCCCCCCCTTSSSTTCCCCCCCC
T ss_pred             HHHHH-CHHHHHHHHHCCCccCCCcccccCcCCcccccccccccCC
Confidence            99999 9999999999999999999999999999999999999998

>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.2e-45  Score=334.59  Aligned_cols=124  Identities=31%  Similarity=0.389  Sum_probs=117.3

Q ss_pred             cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhc--cCCcccEEEEeecCCcccHHHHHHHHH
Q psy6189         414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTD--MLNKVDIVASVREGGHSGQAGAIRWGI  491 (539)
Q Consensus       414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~--~~~k~DI~a~V~GGG~sGQA~AIrlAI  491 (539)
                      .++||||||+|+|+|. +|+|+|+|||+|+..|| +..+|++|++||.+++  .+++|||+|+|+|||.||||+||||||
T Consensus         5 ~~~GrRKtAvArv~l~-~G~G~i~VNg~~l~~y~-~~~~r~~i~~Pl~l~~~~~~~~~Di~v~V~GGG~~gQA~AiR~aI   82 (135)
T 3j20_K            5 QTTGKRKTAIARAVIR-EGKGRVRINGKPVEIIE-PEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAI   82 (135)
T ss_dssp             EEEEEETTEEEEEEEE-ESSCCEEETTEEGGGCS-CSHHHHHHSHHHHHHCHHHHHHEEEEEEEECSCHHHHHHHHHHHH
T ss_pred             EEeCcCccEEEEEEEE-eCceEEEECCeeHHHHC-hHHHHHHhhCChhhcchhhcccccEEEEEECCCEechHhHHHHHH
Confidence            4789999999999996 99999999999995555 5789999999999998  999999999999999999999999999


Q ss_pred             HHHHHccC-ChhhHHHHHH--CCCcccCCCccccCCCCc--ccccccccccCC
Q psy6189         492 SWGLRNFV-EPEMRERMRL--AGLLTRDFRRKERKKPGQ--ARARKKFTWKKR  539 (539)
Q Consensus       492 ArALv~~v-~p~~k~~Lr~--agLLtrDpR~vERKK~G~--~kARk~~qwsKR  539 (539)
                      |||||+|. +|++++.|+.  +||||+|||+|||||||+  +||||+||||||
T Consensus        83 arAL~~~~~~~~lr~~l~~~d~glLtrD~R~~ErKK~G~~~~kARk~~Q~SkR  135 (135)
T 3j20_K           83 ARALVEWTGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR  135 (135)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHCSTTTCCCSCCCCCCCCCSSCSSSSCCCCCCCC
T ss_pred             HHHHHHhccCHHHHHHHHhccCCCccCCCccccccccCCCCCCCccccccccC
Confidence            99999995 4899999997  899999999999999999  999999999998

>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3e-45  Score=338.36  Aligned_cols=124  Identities=29%  Similarity=0.321  Sum_probs=108.3

Q ss_pred             cccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhcc--CCcccEEEEeecCCcccHHHHHHHHH
Q psy6189         414 TKDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDM--LNKVDIVASVREGGHSGQAGAIRWGI  491 (539)
Q Consensus       414 ~~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~--~~k~DI~a~V~GGG~sGQA~AIrlAI  491 (539)
                      .++||||||+|+|+|. +|+|+|+|||+|+.+||+. .+|++|++||.+++.  +++|||+|+|+|||.||||+||||||
T Consensus        14 ~~~GrRKtAvArv~l~-~G~G~i~VNg~~l~~y~~~-~~r~~v~~Pl~l~~~~~~~~~DI~v~V~GGG~sgQA~AiR~gI   91 (149)
T 3iz6_I           14 QCFGRKKTAVAVSYCK-PGRGLIKVNGVPIELIRPE-MLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAI   91 (149)
T ss_dssp             ----------CCCCCC-CCCCSSSEECCCCCCSSCC-EEESSSBHHHHTCSCHHHHHHHTTTTTTSCSTTCCEEECEESS
T ss_pred             EEeccCcceEEEEEEE-eCcEEEEECCCcHHHHChH-HHHHHHHHHHHHHhHhccCceeEEEEEeCCCeecHHHHHHHHH
Confidence            3689999999999996 9999999999999999885 689999999999974  69999999999999999999999999


Q ss_pred             HHHHHcc----CChhhHHHHHHC------CCcccCCCccccCCCCcccccccccccCC
Q psy6189         492 SWGLRNF----VEPEMRERMRLA------GLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       492 ArALv~~----v~p~~k~~Lr~a------gLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      |||||.|    +||+.++.||++      ||||+|||+|||||||++||||+||||||
T Consensus        92 ArALv~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ERKK~G~~kARk~~Q~SkR  149 (149)
T 3iz6_I           92 AKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR  149 (149)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHCSSTHHHHTTTCCCCCCCCSCCCCCTTBSSSSSBCSCC
T ss_pred             HHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence            9999997    588899999987      99999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	539
d2gy9i1	126	d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherich	2e-39
d2vqei1	127	d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus t	7e-38

>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

 Score =  137 bits (347), Expect = 2e-39
 Identities = 52/121 (42%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK + A V + +PG GKI IN++    YF  E  R  +  PL   DM+ K+D+  +V+ G
Sbjct: 8   RKSSAARVFI-KPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGG 66

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQAGAIR GI+  L  + +  +R  +R AG +TRD R+ ERKK G  +AR++  + K
Sbjct: 67  GISGQAGAIRHGITRALMEY-DESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSK 125

Query: 539 R 539
           R
Sbjct: 126 R 126

>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Thermus thermophilus [TaxId: 274]

 Score =  133 bits (336), Expect = 7e-38
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 2/121 (1%)

Query: 419 RKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREG 478
           RK A A V + +PG GK+T+N + + +YF         + PL   D L + D   +VR G
Sbjct: 9   RKEAVARVFL-RPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGG 67

Query: 479 GHSGQAGAIRWGISWGLRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKK 538
           G SGQ  AI+ GI+  L  +  P+ R +++  G LTRD R  ERKK G+ +AR+   + K
Sbjct: 68  GKSGQIDAIKLGIARALVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSK 126

Query: 539 R 539
           R
Sbjct: 127 R 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	539
d2gy9i1	126	Ribosomal protein S9 {Escherichia coli [TaxId: 562	100.0
d2vqei1	127	Ribosomal protein S9 {Thermus thermophilus [TaxId:	100.0

>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.3e-47  Score=340.45  Aligned_cols=123  Identities=42%  Similarity=0.669  Sum_probs=121.1

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWG  494 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArA  494 (539)
                      ++||||||+|+|||. +|+|+|+|||+++.+||+...+++.+++||.+++..++|||+|+|+|||.||||+|||||||||
T Consensus         4 ~tGrRKtaiArv~l~-~G~G~I~IN~~~~~~yf~~~~~~~~~~~pl~~~~~~~~~di~v~V~GGG~sgQa~Air~aIaRa   82 (126)
T d2gy9i1           4 GTGRRKSSAARVFIK-PGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRA   82 (126)
T ss_dssp             ECCEETTEEEEEEEE-ESSSCEEETTEEHHHHTTTCGGGGGGGHHHHHTTCGGGEEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cccccccEEEEEEEE-ecCcEEEECchhHhhhcchHhHHHHHHhHHHhhccccceeEEEEEecCCchhHHHHHHHHHHHH
Confidence            789999999999996 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         495 LRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       495 Lv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||.| +|+.++.|+++||||+|+|+|||||||++||||++|||||
T Consensus        83 Lv~~-~~~~r~~lk~~glLt~D~R~~ErKK~G~~kARk~~Q~skR  126 (126)
T d2gy9i1          83 LMEY-DESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR  126 (126)
T ss_dssp             HHHH-CGGGHHHHTTTTTTSCCCCCCCCCCSSSSSSSSCCCCSCC
T ss_pred             HHHh-CHHHHHHHHHCcCcccCccccccCCCCCcccccCccccCC
Confidence            9999 9999999999999999999999999999999999999998

>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-46  Score=337.94  Aligned_cols=123  Identities=38%  Similarity=0.584  Sum_probs=121.1

Q ss_pred             ccccCcceEEEEEEeecCeeEEEEcCcchhhhCCChHHHHHhhhHHHhhccCCcccEEEEeecCCcccHHHHHHHHHHHH
Q psy6189         415 KDCPRKCARADVTVYQPGTGKITINEKHYFDYFPDENDRQQLMFPLIFTDMLNKVDIVASVREGGHSGQAGAIRWGISWG  494 (539)
Q Consensus       415 ~~GkRKtA~A~V~l~~~GsG~I~ING~~l~eyF~~~~~Re~il~PL~~~~~~~k~DI~a~V~GGG~sGQA~AIrlAIArA  494 (539)
                      ++||||||+|+|||. +|+|+|+|||+|+.+||+....++.+++||.+++.+++|||+|+|+|||.||||+|||||||||
T Consensus         5 ~~GrRKtaiArv~l~-~G~G~I~IN~~~~~~yf~~~~~~~~~~~Pl~~~~~~~~~Di~~~V~GGG~~gQa~Air~aIaRa   83 (127)
T d2vqei1           5 GTGRRKEAVARVFLR-PGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARA   83 (127)
T ss_dssp             ECCEETTEEEEEEEE-ESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             eecccccEEEEEEEE-cCCceEEEechhHhhhccHHHHHHHHHhhhhhhccccceeEEEEEecCChhHHHHHHHHHHHHH
Confidence            789999999999996 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCChhhHHHHHHCCCcccCCCccccCCCCcccccccccccCC
Q psy6189         495 LRNFVEPEMRERMRLAGLLTRDFRRKERKKPGQARARKKFTWKKR  539 (539)
Q Consensus       495 Lv~~v~p~~k~~Lr~agLLtrDpR~vERKK~G~~kARk~~qwsKR  539 (539)
                      ||.| +|++++.|++.||||+|+|+|||||||++||||++|||||
T Consensus        84 L~~~-~~~~r~~lk~~glLt~D~R~~ErKK~G~~kARk~~Q~skR  127 (127)
T d2vqei1          84 LVQY-NPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR  127 (127)
T ss_dssp             HHHH-CGGGHHHHTTTTTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred             HHHH-CHHhHHHHHHCCCcccccccccccCCCcccccccccccCC
Confidence            9999 9999999999999999999999999999999999999998