Psyllid ID: psy6192

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSNPTIDNNVHSK
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEccccccccccccEEEEEEccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHcccEEEEEEccccccccccEEEEEEEEcccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHccccccccEEEEccccHHHHHcccEEEEEEccccccHHHHHHEEEEEcccccccccccccccEEcccccccccccccccccccccccccEEEEEccccHHHHHHHccEEEEcccccccHcHHHHHHHEHHHHHHccccccEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
GFKEFAKTLantndpkwnqsffypgirrsdlklRSIEITVWDYTRYGVNDFLGEVIIELSsslctdepewfyltkhtlelqfplsnlsktlantndpkwnqsffypgirrsdlklRSIEITVWDYTRYGVNDFLGEVIIELSsslctdepewfyltkhknsgsnptidnnvhsk
Flexible Loop (DISEMBL)
GFKEFAKtlantndpkwnqsffypgirrsdlklRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLAntndpkwnqsffypgirrsdlklRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYltkhknsgsnptidnnvhsk
Low Complexity Region (SEG)
GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSNPTIDNNVHSK
Disordered region (IsUnstruct)
***************KWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT******************
Disordered Region (DISOPRED)
**KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQ*****************WNQSFFYP*********RSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE***********************
Disordered Region (DISEMBL)
GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSNPTIDNNVHSK
Disordered Region (DISPRO)
**KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK*****SN**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSNPTIDNNVHSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q86UR5	1692	Regulating synaptic membr	yes	N/A	0.908	0.093	0.322	3e-14
Q9JIR4	1615	Regulating synaptic membr	yes	N/A	0.718	0.077	0.357	4e-14
Q99NE5	1463	Regulating synaptic membr	yes	N/A	0.718	0.085	0.357	5e-14
Q9JIS1	1555	Regulating synaptic membr	no	N/A	0.488	0.054	0.409	3e-13
Q9EQZ7	1530	Regulating synaptic membr	no	N/A	0.505	0.057	0.406	4e-13
Q9UQ26	1411	Regulating synaptic membr	no	N/A	0.488	0.060	0.409	4e-13
Q9Y6V0	5065	Protein piccolo OS=Homo s	no	N/A	0.436	0.015	0.428	1e-12
Q9PU36	5120	Protein piccolo (Fragment	no	N/A	0.436	0.014	0.415	2e-12
Q9QYX7	5068	Protein piccolo OS=Mus mu	no	N/A	0.459	0.015	0.395	4e-12
Q9JKS6	5085	Protein piccolo OS=Rattus	no	N/A	0.436	0.014	0.415	4e-12

>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens GN=RIMS1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 19/177 (10%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELS 60
           K   KT+    +PKWNQ+F Y  + R D + R +EITVWD  R     ++FLGE++IEL 
Sbjct: 795 KRRTKTVKKILEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQEEESEFLGEILIELE 854

Query: 61  SSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEI 120
           ++L  DEP W+ L  H  E   PL   S  +   +           G   S    RS  I
Sbjct: 855 TALLDDEPHWYKLQTHD-ESSLPLPQPSPFMPRRH---------IHGESSSKKLQRSQRI 904

Query: 121 TVWDYTRYGVNDFLGEV-------IIELSSSLCTDEPEWFYLTKHKNSGSNPTIDNN 170
           +  D + Y V+D +G V           S S     PE    T H++   +P   N+
Sbjct: 905 SDSDISDYEVDDGIGVVPPVGYRSSARESKSTTLTVPEQQRTTHHRSRSVSPHRGND 961

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.
Homo sapiens (taxid: 9606)

>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus norvegicus GN=Rims1 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 12/137 (8%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELS 60
           K   KT+    +PKWNQ+F Y  + R D + R +EITVWD  R     ++FLGE++IEL 
Sbjct: 809 KRRTKTVKKLLEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQDEESEFLGEILIELE 868

Query: 61  SSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEI 120
           ++L  DEP W+ L  H  E   PL   S  +   +           G   S    RS  I
Sbjct: 869 TALLDDEPHWYKLQTHD-ESSLPLPQPSPFMPRRH---------IHGESSSKKLQRSQRI 918

Query: 121 TVWDYTRYGVNDFLGEV 137
           +  D + Y V+D +G V
Sbjct: 919 SDSDISDYEVDDGIGVV 935

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Rattus norvegicus (taxid: 10116)

>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein 1 OS=Mus musculus GN=Rims1 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 12/137 (8%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELS 60
           K   KT+    +PKWNQ+F Y  + R D + R +EITVWD  R     ++FLGE++IEL 
Sbjct: 630 KRRTKTVKKLLEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQDEESEFLGEILIELE 689

Query: 61  SSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEI 120
           ++L  DEP W+ L  H  E   PL   S  +   +           G   S    RS  I
Sbjct: 690 TALLDDEPHWYKLQTHD-ESSLPLPQPSPFMPRRH---------IHGESSSKKLQRSQRI 739

Query: 121 TVWDYTRYGVNDFLGEV 137
           +  D + Y V+D +G V
Sbjct: 740 SDSDISDYEVDDGIGVV 756

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q9JIS1|RIMS2_RAT Regulating synaptic membrane exocytosis protein 2 OS=Rattus norvegicus GN=Rims2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELS 60
           K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct: 796 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 855

Query: 61  SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
           ++L  DEP W+ L  H +    PL + S
Sbjct: 856 TALLDDEPHWYKLQTHDVS-SLPLPHPS 882

Rab effector involved in exocytosis. May act as scaffold protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus GN=Rims2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELS 60
           K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct: 867 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 926

Query: 61  SSLCTDEPEWFYLTKHTLELQFPLSNLSKTL 91
           ++L  DEP W+ L  H +    PL   S  L
Sbjct: 927 TALLDDEPHWYKLQTHDVS-SLPLPRPSPYL 956

Rab effector involved in exocytosis. May act as scaffold protein.

Mus musculus (taxid: 10090)

>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein 2 OS=Homo sapiens GN=RIMS2 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELS 60
           K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct: 858 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 917

Query: 61  SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
           ++L  DEP W+ L  H +    PL + S
Sbjct: 918 TALLDDEPHWYKLQTHDVS-SLPLPHPS 944

Rab effector involved in exocytosis. May act as scaffold protein.

Homo sapiens (taxid: 9606)

>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 2    FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
            +K   K +  + +P+WNQ+  Y  I    LK +++E+TVWDY R+  NDFLGEV+I+LSS
Sbjct: 4615 YKRRTKHVQKSLNPEWNQTVIYKSISMEQLKKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 4674

Query: 62   SLCTDE-PEWFYLTKHT 77
            +   D  P W+ L + T
Sbjct: 4675 TSHLDNTPRWYPLKEQT 4691

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Homo sapiens (taxid: 9606)

>sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus GN=PCLO PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 2    FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
            +K   K +  + +P+WNQ+  Y  I    LK +++E+TVWDY R+  NDFLGEV+I+LSS
Sbjct: 4672 YKRRTKYVQKSLNPEWNQTVIYKNISTEQLKKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 4731

Query: 62   -SLCTDEPEWFYLTKHT 77
             S   + P W+ L + +
Sbjct: 4732 VSQLDNTPRWYPLKEQS 4748

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Gallus gallus (taxid: 9031)

>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 2    FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
            +K   K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS
Sbjct: 4681 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 4740

Query: 62   SLCTDE-PEWFYLTKHTLELQ 81
            +   D  P W+ L + T  ++
Sbjct: 4741 TSHLDNTPRWYPLKEQTESIE 4761

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Mus musculus (taxid: 10090)

>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 2    FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
            +K   K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS
Sbjct: 4698 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 4757

Query: 62   SLCTDE-PEWFYLTKHT 77
            +   D  P W+ L + T
Sbjct: 4758 TSHLDNTPRWYPLKEQT 4774

May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
307179861	2298	Regulating synaptic membrane exocytosis	0.425	0.032	0.635	2e-22
332029406	1214	Regulating synaptic membrane exocytosis	0.425	0.060	0.621	3e-22
345494657	1325	PREDICTED: regulating synaptic membrane	0.425	0.055	0.635	2e-21
427796537	1438	Putative rab3 effector rim1, partial [Rh	0.413	0.050	0.594	5e-21
242020223	1131	conserved hypothetical protein [Pediculu	0.425	0.065	0.594	5e-21
157137000	1883	hypothetical protein AaeL_AAEL000479 [Ae	0.454	0.041	0.594	3e-20
347966387	2775	AGAP001690-PB [Anopheles gambiae str. PE	0.425	0.026	0.594	3e-20
347966389	2744	AGAP001690-PA [Anopheles gambiae str. PE	0.425	0.026	0.594	3e-20
307196949	2596	Regulating synaptic membrane exocytosis	0.425	0.028	0.594	6e-20
312380085	2345	hypothetical protein AND_07923 [Anophele	0.425	0.031	0.608	9e-20

>gi|307179861|gb|EFN68019.1| Regulating synaptic membrane exocytosis protein 2 [Camponotus floridanus]

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 59/74 (79%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K   KT+ANTNDP+WNQ+FFY G+RRS+L+ R++EITVWDY RY  NDFLGEV++EL+  
Sbjct: 640 KRRTKTVANTNDPRWNQTFFYNGVRRSELRKRALEITVWDYARYEANDFLGEVVLELAVC 699

Query: 63  LCTDEPEWFYLTKH 76
           L  +EPEW  LT H
Sbjct: 700 LLDEEPEWHSLTAH 713

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029406|gb|EGI69360.1| Regulating synaptic membrane exocytosis protein 2 [Acromyrmex echinatior]

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/74 (62%), Positives = 57/74 (77%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K   KT+ANTNDP+WNQ+F Y G+RRSDL+ R++EITVWDY RY  NDFLGE ++EL+  
Sbjct: 518 KRRTKTVANTNDPRWNQTFVYNGVRRSDLRKRALEITVWDYARYEANDFLGEAVLELAVC 577

Query: 63  LCTDEPEWFYLTKH 76
           L  +EPEW  LT H
Sbjct: 578 LLDEEPEWHSLTAH 591

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494657|ref|XP_001604596.2| PREDICTED: regulating synaptic membrane exocytosis protein 2-like [Nasonia vitripennis]

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 58/74 (78%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K+  KTLANTN+P+W+Q+F Y GIR S+L+ RS+EITVWDY RYG NDFLGEVI+ L++S
Sbjct: 800 KKRTKTLANTNEPRWDQTFVYNGIRWSELRQRSLEITVWDYGRYGANDFLGEVILSLAAS 859

Query: 63  LCTDEPEWFYLTKH 76
              DE EW YL  H
Sbjct: 860 SLNDELEWHYLMAH 873

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796537|gb|JAA63720.1| Putative rab3 effector rim1, partial [Rhipicephalus pulchellus]

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 59/74 (79%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+ANTN+PKWNQSF Y  +R+SDL  R++E+TVWDY RYG NDFLGEV+IEL+++   
Sbjct: 729 TKTIANTNEPKWNQSFVYAPLRKSDLINRALEVTVWDYDRYGANDFLGEVVIELATAPLG 788

Query: 148 DEPEWFYLTKHKNS 161
            + EW+ LT H+ S
Sbjct: 789 GDGEWYPLTSHEES 802

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020223|ref|XP_002430555.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515719|gb|EEB17817.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 59/74 (79%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K   KT+ANTNDP+WNQ+F Y GIRR+DLKL+ +EITVWDY R+G NDFLGEV++E++ +
Sbjct: 430 KRRTKTIANTNDPRWNQTFVYCGIRRNDLKLKILEITVWDYVRFGANDFLGEVLLEVNMA 489

Query: 63  LCTDEPEWFYLTKH 76
              +EP W++L  H
Sbjct: 490 PLDEEPTWYHLNAH 503

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137000|ref|XP_001656969.1| hypothetical protein AaeL_AAEL000479 [Aedes aegypti] gi|108884236|gb|EAT48461.1| AAEL000479-PA [Aedes aegypti]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 58/79 (73%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K   KTLA TN+P+W Q+F Y G+RR+DL+ R  EITVWDY RYG NDFLGEVI++LS+ 
Sbjct: 455 KRRTKTLALTNEPRWGQTFVYDGLRRADLQNRLFEITVWDYVRYGANDFLGEVILDLSTY 514

Query: 63  LCTDEPEWFYLTKHTLELQ 81
              DEPEWF L  H+  L+
Sbjct: 515 PLDDEPEWFNLQPHSENLR 533

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966387|ref|XP_003435904.1| AGAP001690-PB [Anopheles gambiae str. PEST] gi|333470082|gb|EGK97509.1| AGAP001690-PB [Anopheles gambiae str. PEST]

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 55/74 (74%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KTLA TNDP+W Q+F Y G+RR+DL  R  E+TVWDY RYG NDFLGEVII+LS+    
Sbjct: 841 TKTLALTNDPRWGQTFVYEGLRRADLNNRLFEVTVWDYVRYGANDFLGEVIIDLSTHPLD 900

Query: 148 DEPEWFYLTKHKNS 161
           DE EW+ L  H+ +
Sbjct: 901 DEAEWYILQPHQET 914

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966389|ref|XP_321402.5| AGAP001690-PA [Anopheles gambiae str. PEST] gi|333470081|gb|EAA00843.6| AGAP001690-PA [Anopheles gambiae str. PEST]

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 55/74 (74%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KTLA TNDP+W Q+F Y G+RR+DL  R  E+TVWDY RYG NDFLGEVII+LS+    
Sbjct: 810 TKTLALTNDPRWGQTFVYEGLRRADLNNRLFEVTVWDYVRYGANDFLGEVIIDLSTHPLD 869

Query: 148 DEPEWFYLTKHKNS 161
           DE EW+ L  H+ +
Sbjct: 870 DEAEWYILQPHQET 883

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196949|gb|EFN78324.1| Regulating synaptic membrane exocytosis protein 2 [Harpegnathos saltator]

 Score =  102 bits (254), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 56/74 (75%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K   KT+ANTNDPKWNQ F Y GIR ++L+ R++EITVWDY +Y VNDFLGEV++EL+  
Sbjct: 631 KRRTKTVANTNDPKWNQYFVYNGIRHTELRKRTLEITVWDYMKYDVNDFLGEVVLELAVY 690

Query: 63  LCTDEPEWFYLTKH 76
              ++PEW  LT H
Sbjct: 691 PLNEDPEWHALTAH 704

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380085|gb|EFR26178.1| hypothetical protein AND_07923 [Anopheles darlingi]

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 55/74 (74%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KTLA TNDP+W Q+F Y G+RR+DL  R  E+TVWDY RYG NDFLGEVII+LS+    
Sbjct: 523 TKTLALTNDPRWGQTFVYEGLRRADLNNRLFEVTVWDYVRYGANDFLGEVIIDLSTHPLD 582

Query: 148 DEPEWFYLTKHKNS 161
           DE EW  L  H++S
Sbjct: 583 DEAEWHILQPHQDS 596

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
FB|FBgn0053547	2908	Rim "Rab3 interacting molecule	0.425	0.025	0.486	8.3e-17
MGI|MGI:2152972	1530	Rims2 "regulating synaptic mem	0.505	0.057	0.406	1.1e-14
RGD|620001	1555	Rims2 "regulating synaptic mem	0.488	0.054	0.409	1.2e-14
UNIPROTKB|F1LNC5	1555	Rims2 "Regulating synaptic mem	0.488	0.054	0.409	1.2e-14
UNIPROTKB|Q9JIS1	1555	Rims2 "Regulating synaptic mem	0.488	0.054	0.409	1.2e-14
UNIPROTKB|D4AEJ9	1557	Rims2 "Regulating synaptic mem	0.488	0.054	0.409	1.2e-14
UNIPROTKB|F1P9T3	1476	RIMS2 "Uncharacterized protein	0.488	0.057	0.409	1.7e-14
UNIPROTKB|J9NYS3	1611	RIMS2 "Uncharacterized protein	0.488	0.052	0.409	2.1e-14
UNIPROTKB|E1B7V2	1342	RIMS2 "Uncharacterized protein	0.488	0.063	0.409	2.8e-14
UNIPROTKB|F1P5P9	1602	F1P5P9 "Uncharacterized protei	0.718	0.078	0.376	1e-13

FB|FBgn0053547 Rim "Rab3 interacting molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 8.3e-17, P = 8.3e-17
 Identities = 36/74 (48%), Positives = 54/74 (72%)

Query:    88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
             +KT+  T +P+W Q+F Y G+RR DL  R +E+T+WDY RYG NDF+GEV+I+L+  +  
Sbjct:  1225 TKTVGTTCEPRWGQTFVYSGLRRCDLNGRLLEVTLWDYVRYGANDFIGEVVIDLAHHILD 1284

Query:   148 DEPEWFYLTKHKNS 161
             DE EW+ L  H+++
Sbjct:  1285 DEAEWYQLQPHQDT 1298

GO:0008021 "synaptic vesicle" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016079 "synaptic vesicle exocytosis" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=ISS

GO:0017157 "regulation of exocytosis" evidence=ISS

GO:0070073 "clustering of voltage-gated calcium channels" evidence=IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0048786 "presynaptic active zone" evidence=IDA

MGI|MGI:2152972 Rims2 "regulating synaptic membrane exocytosis 2" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 37/91 (40%), Positives = 53/91 (58%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   867 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 926

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLSKTL 91
             ++L  DEP W+ L  H +    PL   S  L
Sbjct:   927 TALLDDEPHWYKLQTHDVS-SLPLPRPSPYL 956

GO:0005515 "protein binding" evidence=IPI

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IDA

GO:0017157 "regulation of exocytosis" evidence=IMP

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0019933 "cAMP-mediated signaling" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030073 "insulin secretion" evidence=IMP;IDA

GO:0042391 "regulation of membrane potential" evidence=IDA

GO:0043005 "neuron projection" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0044325 "ion channel binding" evidence=IDA

GO:0045202 "synapse" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IGI

GO:2000300 "regulation of synaptic vesicle exocytosis" evidence=ISO

RGD|620001 Rims2 "regulating synaptic membrane exocytosis 2" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   796 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 855

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
             ++L  DEP W+ L  H +    PL + S
Sbjct:   856 TALLDDEPHWYKLQTHDVS-SLPLPHPS 882

GO:0005515 "protein binding" evidence=IPI

GO:0006887 "exocytosis" evidence=TAS

GO:0017156 "calcium ion-dependent exocytosis" evidence=ISO

GO:0017157 "regulation of exocytosis" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=IDA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0030073 "insulin secretion" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISO

GO:2000300 "regulation of synaptic vesicle exocytosis" evidence=IMP

UNIPROTKB|F1LNC5 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   796 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 855

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
             ++L  DEP W+ L  H +    PL + S
Sbjct:   856 TALLDDEPHWYKLQTHDVS-SLPLPHPS 882

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9JIS1 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   796 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 855

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
             ++L  DEP W+ L  H +    PL + S
Sbjct:   856 TALLDDEPHWYKLQTHDVS-SLPLPHPS 882

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

UNIPROTKB|D4AEJ9 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   796 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 855

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
             ++L  DEP W+ L  H +    PL + S
Sbjct:   856 TALLDDEPHWYKLQTHDVS-SLPLPHPS 882

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1P9T3 RIMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   811 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 870

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
             ++L  DEP W+ L  H +    PL + S
Sbjct:   871 TALLDDEPHWYKLQTHDVS-SLPLPHPS 897

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NYS3 RIMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   780 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 839

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
             ++L  DEP W+ L  H +    PL + S
Sbjct:   840 TALLDDEPHWYKLQTHDVS-SLPLPHPS 866

GO:0046872 "metal ion binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1B7V2 RIMS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct:   595 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 654

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLS 88
             ++L  DEP W+ L  H +    PL + S
Sbjct:   655 TALLDDEPHWYKLQTHDVS-SLPLPHPS 681

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

UNIPROTKB|F1P5P9 F1P5P9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 52/138 (37%), Positives = 73/138 (52%)

Query:     3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELS 60
             K   KT+  + +PKWNQ+F Y  + R D + R +EITVWD  R     ++FLGE++IEL 
Sbjct:   702 KRRTKTVKKSLEPKWNQTFLYSHVHRRDFRERMLEITVWDQPRVQEEESEFLGEILIELE 761

Query:    61 SSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIE 119
             ++L  DEP W+ L  H  E   PL   S  +     P+ +      G   S  KL RS  
Sbjct:   762 TALLDDEPHWYKLQTHD-ESSLPLPQPSPFM-----PRRHVH----GGESSSKKLQRSRP 811

Query:   120 ITVWDYTRYGVNDFLGEV 137
             I+  D + Y V+D +G V
Sbjct:   812 ISDSDISDYDVDDGIGVV 829

GO:0046872 "metal ion binding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0048169 "regulation of long-term neuronal synaptic plasticity" evidence=IEA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	6e-27
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-26
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	7e-12
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	7e-12
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-11
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	5e-11
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	6e-11
smart00239	101	smart00239, C2, Protein kinase C conserved region	9e-11
cd00030	102	cd00030, C2, C2 domain	2e-09
pfam00168	85	pfam00168, C2, C2 domain	3e-09
cd00030	102	cd00030, C2, C2 domain	5e-09
pfam00168	85	pfam00168, C2, C2 domain	5e-09
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	6e-09
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	6e-09
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-08
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-08
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	6e-08
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-07
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-07
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	9e-06
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-05
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	1e-05
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-05
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-05
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	5e-05
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	5e-05
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	1e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-04
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	4e-04
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	4e-04
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	4e-04
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	4e-04
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	5e-04
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	6e-04
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	7e-04
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	9e-04
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	0.002
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	0.002
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.002
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.002
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	0.002
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	0.003
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	0.003
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.004
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	0.004
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	0.004

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 98.1 bits (245), Expect = 6e-27
 Identities = 37/68 (54%), Positives = 51/68 (75%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+  T +P+WNQ+F Y  +RR  LK R++E+TVWDY R G NDFLGEV+I+L+ +L  
Sbjct: 57  TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD 116

Query: 148 DEPEWFYL 155
           DEP W+ L
Sbjct: 117 DEPHWYPL 124

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 96.9 bits (242), Expect = 2e-26
 Identities = 37/67 (55%), Positives = 50/67 (74%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           KT+  T +P+WNQ+F Y  +RR  LK R++E+TVWDY R G NDFLGEV+I+L+ +L  D
Sbjct: 58  KTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD 117

Query: 67  EPEWFYL 73
           EP W+ L
Sbjct: 118 EPHWYPL 124

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.2 bits (144), Expect = 7e-12
 Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 11  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCTDEPE 69
           NT +P +N++  Y  I +S L+ R+++++VW + R+G N FLGEV I L S  L + + E
Sbjct: 61  NTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSE 119

Query: 70  WFYL 73
           W+ L
Sbjct: 120 WYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.2 bits (144), Expect = 7e-12
 Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 93  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCTDEPE 151
           NT +P +N++  Y  I +S L+ R+++++VW + R+G N FLGEV I L S  L + + E
Sbjct: 61  NTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSE 119

Query: 152 WFYL 155
           W+ L
Sbjct: 120 WYPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +K + NT +P WN++F +        +L  +EI V+D  R+G +DF+G+V I LS  L  
Sbjct: 39  TKVVKNTLNPVWNETFEFEVP---PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95

Query: 148 DEPEWF 153
              E  
Sbjct: 96  GRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
           +  +  + +P WN +F Y G+   DL    +E+TVWD+ +   NDFLG V + L +
Sbjct: 68  TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGT 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 12  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
           + +P WN +F Y G+   DL    +E+TVWD+ +   NDFLG V + L +
Sbjct: 74  SVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGT 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 55.6 bits (134), Expect = 9e-11
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           K + NT +P WN++F +        +L  +EI V+D  R+G +DF+G+V I LS  L   
Sbjct: 40  KVVKNTLNPVWNETFEFEVP---PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG 96

Query: 67  EPEWF 71
             E  
Sbjct: 97  RHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +K + NT +P WN++F +P     D +  ++ + VWD  R+  +DFLGEV I LS  L +
Sbjct: 36  TKVVKNTLNPVWNETFEFP---VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDS 92

Query: 148 DEP--EWFYL 155
            +    W  L
Sbjct: 93  GKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 51.1 bits (123), Expect = 3e-09
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVI 138
           +K + NT +P WN++F +         L  + I V+DY R+G +DF+GEV 
Sbjct: 38  TKVVKNTLNPVWNETFTFEVTLPE---LAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           K + NT +P WN++F +P     D +  ++ + VWD  R+  +DFLGEV I LS  L + 
Sbjct: 37  KVVKNTLNPVWNETFEFP---VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSG 93

Query: 67  EP--EWFYL 73
           +    W  L
Sbjct: 94  KEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 7  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVI 56
          K + NT +P WN++F +         L  + I V+DY R+G +DF+GEV 
Sbjct: 39 KVVKNTLNPVWNETFTFEVTLPE---LAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
           K +  T +P +N+   Y G+   DL+ R ++++VW +     N+FLG V I L    L  
Sbjct: 54  KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ 113

Query: 66  DEPEWFYLT 74
           +  +W+ L 
Sbjct: 114 ETEKWYPLG 122

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 147
           K +  T +P +N+   Y G+   DL+ R ++++VW +     N+FLG V I L    L  
Sbjct: 54  KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ 113

Query: 148 DEPEWFYLT 156
           +  +W+ L 
Sbjct: 114 ETEKWYPLG 122

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 11  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCTDEPE 69
           NT +P +N++  Y  I  S L+ R+++++VW Y R+G N FLGEV I L S +  +   E
Sbjct: 62  NTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEE 120

Query: 70  WFYL 73
              L
Sbjct: 121 CLPL 124

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 93  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCTDEPE 151
           NT +P +N++  Y  I  S L+ R+++++VW Y R+G N FLGEV I L S +  +   E
Sbjct: 62  NTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEE 120

Query: 152 WFYL 155
              L
Sbjct: 121 CLPL 124

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 142
           +KT+  T +P++N++  Y GI   D++ +++ + V D  R+G NDFLGE  I L 
Sbjct: 56  TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLK 109

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
           KT+  T +P++N++  Y GI   D++ +++ + V D  R+G NDFLGE  I L 
Sbjct: 57  KTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLK 109

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 12  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           T +P++N+ FFY  I+ SDL  +++EITVWD      ND++G + + +++ 
Sbjct: 60  TLNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAK 109

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 94  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
           T +P++N+ FFY  I+ SDL  +++EITVWD      ND++G + + +++ 
Sbjct: 60  TLNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAK 109

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
           K+  KT+  T +P WN++F +  ++ +D K R + I VWD+ R   NDF+G +   +S
Sbjct: 51  KQKTKTIKKTLNPVWNETFTFD-LKPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVS 106

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 142
           KT+  T +P WN++F +  ++ +D K R + I VWD+ R   NDF+G +   +S
Sbjct: 55  KTIKKTLNPVWNETFTFD-LKPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVS 106

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
           +KT+  T +P WN+SF  P   R    L+   + V+D+ R G +D LG   I+LS 
Sbjct: 36  TKTIKKTLNPVWNESFEVPVPSRVRAVLK---VEVYDWDRGGKDDLLGSAYIDLSD 88

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 7  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
          KTL    +P WN+SF  P   R    L+   + V+D+ R G +D LG   I+LS 
Sbjct: 41 KTL----NPVWNESFEVPVPSRVRAVLK---VEVYDWDRGGKDDLLGSAYIDLSD 88

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRS------------DLKLRSIEITVWDYTRYGVNDFLG 135
           +K    TN+P+++++F++                  DL+   + + +W  +    +DFLG
Sbjct: 38  TKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLG 97

Query: 136 EVIIELSSSLCTDEPE-WFYLTKHKNSGSNPTIDNNVHS 173
           EV I L         + W++L   +  G+  + D ++ S
Sbjct: 98  EVRIPLQGLQQAGSHQAWYFLQPREAPGTRSSNDGSLGS 136

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 12  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCTDEPEW 70
           T +P +N++  Y  + R +L  R + ++VW     G N FLGEV ++L S      +P W
Sbjct: 63  TLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTW 121

Query: 71  FYL 73
           + L
Sbjct: 122 YPL 124

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 94  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCTDEPEW 152
           T +P +N++  Y  + R +L  R + ++VW     G N FLGEV ++L S      +P W
Sbjct: 63  TLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTW 121

Query: 153 FYL 155
           + L
Sbjct: 122 YPL 124

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 12  TNDPKWNQSFFYPGIRRS------------DLKLRSIEITVWDYTRYGVNDFLGEVIIEL 59
           TN+P+++++F++                  DL+   + + +W  +    +DFLGEV I L
Sbjct: 44  TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPL 103

Query: 60  SSSLCTDEPE-WFYL 73
                    + W++L
Sbjct: 104 QGLQQAGSHQAWYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           KT+  T +PKWN+ FF+  +   + +L      V+D  R   +DFLG+V + L++     
Sbjct: 44  KTIKKTLNPKWNEEFFFR-VNPREHRLL---FEVFDENRLTRDDFLGQVEVPLNNLPTET 99

Query: 67  EPEWFYLTKHTLELQFPLSNLSKTLAN 93
                  T     L  P S+ S+   +
Sbjct: 100 PGNERRYT-FKDYLLRPRSSKSRVKGH 125

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 75  KHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFL 134
           KH LE +    NL        +P WN++F + G     L+ R + + V DY R+  ND +
Sbjct: 50  KHKLETKVKRKNL--------NPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPI 101

Query: 135 GEVIIELSSSLCTDEP 150
           GEV + L+    T+E 
Sbjct: 102 GEVSLPLNKVDLTEEQ 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148
           KT+  T +PKWN+ FF+  +   + +L      V+D  R   +DFLG+V + L++     
Sbjct: 44  KTIKKTLNPKWNEEFFFR-VNPREHRLL---FEVFDENRLTRDDFLGQVEVPLNNLPTET 99

Query: 149 E 149
            
Sbjct: 100 P 100

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 9/51 (17%)

Query: 11  NTNDPKWNQSFFYP----GIRRSDLKLRSIEITVWDYTRYGVNDFLGEVII 57
            T +P +N+SF +      I++  L      +TV DY R G ND +G+V++
Sbjct: 61  RTLNPYYNESFSFEVPFEQIQKVHLI-----VTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 9/51 (17%)

Query: 93  NTNDPKWNQSFFYP----GIRRSDLKLRSIEITVWDYTRYGVNDFLGEVII 139
            T +P +N+SF +      I++  L      +TV DY R G ND +G+V++
Sbjct: 61  RTLNPYYNESFSFEVPFEQIQKVHLI-----VTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 1  GFKEFAKTLANTNDPKWNQSFFYP---GIRRSDLKLRSIEITVWDYTRYGVNDFLGEVII 57
          G K+  + L N  +P WN++F +P        +    S+EI V DY + G N  +G   +
Sbjct: 25 GVKKKTRVLENELNPVWNETFEWPLAGSPDPDE----SLEIVVKDYEKVGRNRLIGSATV 80

Query: 58 EL 59
           L
Sbjct: 81 SL 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 19/55 (34%), Positives = 31/55 (56%)

Query: 14  DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP 68
           +P WN++F + G     L+ R + + V DY R+  ND +GEV + L+    T+E 
Sbjct: 63  NPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQ 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +  +  T DP +N+SF +  + + +L+  S+  TV+ +     NDF+G ++I   SS  +
Sbjct: 55  TSCMRGTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS 113

Query: 148 DEPEW 152
           +   W
Sbjct: 114 ETNHW 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 8   TLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE 67
            +  T DP +N+SF +  + + +L+  S+  TV+ +     NDF+G ++I   SS  ++ 
Sbjct: 57  CMRGTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSET 115

Query: 68  PEW 70
             W
Sbjct: 116 NHW 118

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 13/61 (21%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKL-----RSIEITVWDYTRYGVNDFLGEVIIELS 142
           SK  + T +P+W + F        DL L     + +EI VWD      ++F+G   I+LS
Sbjct: 36  SKVCSKTLNPQWLEQF--------DLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLS 87

Query: 143 S 143
           +
Sbjct: 88  A 88

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
           +     T +P +N++F +  +    L+  S+ ITV D    G N+ +G+V++   S 
Sbjct: 55  TSVKKGTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSG 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
                T +P +N++F +  +    L+  S+ ITV D    G N+ +G+V++   S 
Sbjct: 56  SVKKGTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSG 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 6   AKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV-NDFLGEVIIELSSSLC 64
            +T     +P WN+   +     S L    +E+ V++  R G    FLG V I  +S + 
Sbjct: 36  TRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVP 95

Query: 65  TDE--PEWFYLTKHTL 78
             E   + + L K  L
Sbjct: 96  PSEAVVQRYPLEKRGL 111

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 6   AKT--LANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
            KT  L  T +P ++++F + GI  + L+  S+   V  + RY  +D +GEV+  L+ 
Sbjct: 54  VKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAG 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +  +  +  P+WN+ F +  +  +D  L    + VWD+     NDFLG+V+  + +    
Sbjct: 36  TSVVKKSCYPRWNEVFEFELMEGADSPLS---VEVWDWDLVSKNDFLGKVVFSIQTLQQA 92

Query: 148 DEPE-WFYLTKHKNS 161
            + E WF L     +
Sbjct: 93  KQEEGWFRLLPDPRA 107

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 88  SKTLANTNDPKWNQSFFYP---GIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIEL 141
           ++ L N  +P WN++F +P        +    S+EI V DY + G N  +G   + L
Sbjct: 30  TRVLENELNPVWNETFEWPLAGSPDPDE----SLEIVVKDYEKVGRNRLIGSATVSL 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 89  KT--LANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
           KT  L  T +P ++++F + GI  + L+  S+   V  + RY  +D +GEV+  L+ 
Sbjct: 55  KTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAG 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV-NDFLGEVIIELSSSLC 146
           ++T     +P WN+   +     S L    +E+ V++  R G    FLG V I  +S + 
Sbjct: 36  TRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVP 95

Query: 147 TDE--PEWFYLTK 157
             E   + + L K
Sbjct: 96  PSEAVVQRYPLEK 108

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           ++T+ NT +PKWN    +P     +     +++ +WD  R+   D+LGE  I L      
Sbjct: 39  TQTIPNTLNPKWNYWCEFPIFSAQNQ---LLKLILWDKDRFAGKDYLGEFDIALEEVFAD 95

Query: 148 DE----PEWFYL 155
            +     +W  L
Sbjct: 96  GKTGQSDKWITL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 8   TLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE 67
           T+ NT +PKWN    +P     +     +++ +WD  R+   D+LGE  I L       +
Sbjct: 41  TIPNTLNPKWNYWCEFPIFSAQNQ---LLKLILWDKDRFAGKDYLGEFDIALEEVFADGK 97

Query: 68  ----PEWFYL 73
                +W  L
Sbjct: 98  TGQSDKWITL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG1028|consensus	421		99.95
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.75
KOG2059|consensus	800		99.75
KOG0696|consensus	683		99.75
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.75
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.68
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.67
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.67
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.67
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.67
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.66
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.66
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.66
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.65
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.65
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.64
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.64
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.64
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.63
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.63
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.63
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.62
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.62
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.62
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.6
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.59
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.58
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.58
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.57
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.57
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.57
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.56
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.56
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.56
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.55
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.55
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.55
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.55
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.55
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.54
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.54
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.54
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.54
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.53
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.53
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.53
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.52
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.51
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.51
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.51
KOG1013|consensus	362		99.5
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.5
KOG0696|consensus	683		99.5
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.5
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.5
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.5
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.49
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.49
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.49
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.48
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.48
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.48
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.48
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.48
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.48
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.48
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.47
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.47
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.47
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.47
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.47
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.46
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.46
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.46
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.46
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.45
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.45
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.45
KOG1328|consensus	1103		99.45
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.45
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.45
KOG1030|consensus	168		99.44
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.44
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.44
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.44
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.44
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.44
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.44
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.43
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.43
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.42
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.42
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.42
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.42
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.42
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.42
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.42
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.41
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.41
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.41
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.4
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.4
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.4
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.4
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.4
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.39
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.39
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.38
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.38
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.38
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.36
KOG1030|consensus	168		99.36
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.36
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.36
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.36
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.36
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.35
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.35
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.35
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.35
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.35
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.35
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.35
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.35
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.34
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.34
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.34
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.34
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.34
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.34
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.34
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.34
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.33
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.33
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.33
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.33
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.33
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.32
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.32
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.32
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.31
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.29
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.29
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.29
KOG1028|consensus	421		99.28
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.28
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.28
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.28
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.27
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.27
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.27
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.26
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.26
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.26
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.26
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.26
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.26
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.24
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.24
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.24
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.24
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.24
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.23
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.23
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.22
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.22
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.22
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.22
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.21
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.21
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.21
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.21
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.2
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.18
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.18
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.17
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.17
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.16
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.16
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.15
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.14
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.13
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.12
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.11
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.11
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.09
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.08
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.08
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.08
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.03
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	99.01
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.0
PLN03008	868	Phospholipase D delta	98.98
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	98.98
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.95
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.94
PLN03008	868	Phospholipase D delta	98.94
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.84
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	98.83
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.81
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.81
KOG1328|consensus	1103		98.8
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.78
cd00030	102	C2 C2 domain. The C2 domain was first identified i	98.77
PLN02952	599	phosphoinositide phospholipase C	98.76
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	98.74
PLN02223	537	phosphoinositide phospholipase C	98.74
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	98.73
PLN02952	599	phosphoinositide phospholipase C	98.73
PLN02223	537	phosphoinositide phospholipase C	98.73
KOG1327|consensus	529		98.64
PLN02222	581	phosphoinositide phospholipase C 2	98.61
PLN02230	598	phosphoinositide phospholipase C 4	98.6
PLN02230	598	phosphoinositide phospholipase C 4	98.54
KOG0169|consensus	746		98.53
PLN02222	581	phosphoinositide phospholipase C 2	98.51
KOG1326|consensus	1105		98.51
KOG0169|consensus	746		98.43
KOG1011|consensus	1283		98.42
KOG0905|consensus	1639		98.37
KOG0905|consensus	1639		98.37
PLN02228	567	Phosphoinositide phospholipase C	98.35
KOG1031|consensus	1169		98.33
PLN02228	567	Phosphoinositide phospholipase C	98.27
KOG1264|consensus	1267		98.22
KOG2059|consensus	800		98.14
PLN02270	808	phospholipase D alpha	98.03
KOG1326|consensus	1105		97.97
KOG1031|consensus	1169		97.94
KOG1011|consensus	1283		97.85
PLN02964	644	phosphatidylserine decarboxylase	97.79
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.74
KOG1264|consensus	1267		97.73
KOG1013|consensus	362		97.68
KOG2060|consensus	405		97.55
PLN02270	808	phospholipase D alpha	97.47
PLN02964	644	phosphatidylserine decarboxylase	97.41
PLN02352	758	phospholipase D epsilon	97.3
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.25
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	96.98
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	96.96
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.78
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.62
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.92
KOG1265|consensus	1189		95.82
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.79
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.74
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.72
KOG1327|consensus	529		95.59
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.5
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.5
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.38
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.38
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.32
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.16
PLN02352	758	phospholipase D epsilon	95.1
KOG3837|consensus	523		95.06
KOG3837|consensus	523		95.0
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.83
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.76
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.74
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.71
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	94.59
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	94.54
KOG1265|consensus	1189		94.46
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	94.06
PF15627	156	CEP76-C2: CEP76 C2 domain	93.82
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	93.45
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	92.88
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	92.83
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	92.75
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	92.38
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	91.09
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	90.86
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	90.4
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	90.16
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	90.09
KOG2060|consensus	405		89.76
PF15627	156	CEP76-C2: CEP76 C2 domain	89.69
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	89.34
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	85.54
KOG0906|consensus	843		83.63
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	80.43

>KOG1028|consensus

Probab=99.95  E-value=1.6e-27  Score=191.19  Aligned_cols=140  Identities=28%  Similarity=0.498  Sum_probs=123.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc----
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH----   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~----   76 (174)
                      +|.+|++.++|+||.|||+|.|. |+.+++...+|.+.|||+|+++++++||++.++|..+..... ..|.+|.+.    
T Consensus       202 ~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~  280 (421)
T KOG1028|consen  202 GKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS  280 (421)
T ss_pred             CcceeeeeecCcCCccccceEee-cCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCc
Confidence            57899999999999999999998 999999999999999999999999999999999988776554 459888763    


Q ss_pred             ---ceEec----c-C--------------------------C-------------CCccccccCCCCCccccEEEeCccc
Q psy6192          77 ---TLELQ----F-P--------------------------L-------------SNLSKTLANTNDPKWNQSFFYPGIR  109 (174)
Q Consensus        77 ---~~~l~----~-p--------------------------~-------------~~kT~~~~~t~~P~wne~~~f~~~~  109 (174)
                         .+++.    | |                          +             ++||.+++++.||+|||+|.|. ++
T Consensus       281 ~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp  359 (421)
T KOG1028|consen  281 EELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VP  359 (421)
T ss_pred             ccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CC
Confidence               11221    1 1                          0             7889999999999999999998 99


Q ss_pred             cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCc
Q psy6192         110 RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS  143 (174)
Q Consensus       110 ~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~  143 (174)
                      .+++.+..+.|+|||++.++++++||.+.++...
T Consensus       360 ~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  360 PEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             HHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            9999989999999999999999999999999885

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.75  E-value=2.2e-18  Score=115.04  Aligned_cols=71  Identities=14%  Similarity=0.292  Sum_probs=63.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L   73 (174)
                      +|++|+++++|+||+|||+|.|. ++.+++...+|.|.|||+|+++++++||++.++++.+.... ...|.+|
T Consensus        47 ~k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          47 KEAQTALKKLALHTQWEEELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             cEEEcceecCCCCCccccEEEEe-CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            47789999999999999999998 99999999999999999999999999999999999875443 3447654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>KOG2059|consensus

Probab=99.75  E-value=3e-18  Score=140.27  Aligned_cols=148  Identities=23%  Similarity=0.486  Sum_probs=117.1

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccc-----
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT-----   77 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~-----   77 (174)
                      .||.++.++++|.|.|.|.|+ ++..-   ..|.|.|||.| +++|+.||++.+.-.++...+ ...|+.|++.+     
T Consensus        40 ~RT~tv~ksL~PF~gEe~~~~-iP~~F---~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEV  114 (800)
T KOG2059|consen   40 CRTATVEKSLCPFFGEEFYFE-IPRTF---RYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEV  114 (800)
T ss_pred             hhhhhhhhhcCCccccceEEe-cCcce---eeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCChhh
Confidence            479999999999999999998 87664   56999999999 999999999999887766544 45599998631     


Q ss_pred             -e----Eec--------------------cCC--------------------CCccccccCCCCCccccEEEeCccccC-
Q psy6192          78 -L----ELQ--------------------FPL--------------------SNLSKTLANTNDPKWNQSFFYPGIRRS-  111 (174)
Q Consensus        78 -~----~l~--------------------~p~--------------------~~kT~~~~~t~~P~wne~~~f~~~~~~-  111 (174)
                       |    ++.                    +|.                    .++|+++++|.+|.|+|.|.|. +..+ 
T Consensus       115 QG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~  193 (800)
T KOG2059|consen  115 QGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFE-VTREE  193 (800)
T ss_pred             ceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeee-ecccc
Confidence             1    111                    111                    3589999999999999999998 6543 


Q ss_pred             ------------CCCcceEEEEEEe-CCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192         112 ------------DLKLRSIEITVWD-YTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus       112 ------------~~~~~~l~i~v~d-~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                                  +-....|.+.+|+ .+....+.|+|++.+++..+... +-+.||.|++
T Consensus       194 ~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp  253 (800)
T KOG2059|consen  194 SYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP  253 (800)
T ss_pred             ccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEec
Confidence                        1123567888998 55666699999999999988744 5679999999

>KOG0696|consensus

Probab=99.75  E-value=2.9e-19  Score=140.02  Aligned_cols=84  Identities=29%  Similarity=0.561  Sum_probs=79.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc--CCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK--HKNSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~--~~~~~  162 (174)
                      ++||+++++++||+|||+|.|. +.+++.+ .+|.|+|||+++.++++|+|...++++++...+..+||.|+.  +||+.
T Consensus       218 KqKTkTik~~LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsqeEGEyy  295 (683)
T KOG0696|consen  218 KQKTKTIKATLNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQEEGEYY  295 (683)
T ss_pred             hhhhhhhhhhcCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhhhcCcee
Confidence            7899999999999999999999 8888777 999999999999999999999999999999999999999888  99999


Q ss_pred             CCCccCCC
Q psy6192         163 SNPTIDNN  170 (174)
Q Consensus       163 ~~~~~~~~  170 (174)
                      |||++++.
T Consensus       296 Nvp~~~~~  303 (683)
T KOG0696|consen  296 NVPVPDED  303 (683)
T ss_pred             ccCCCCch
Confidence            99998764

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.75  E-value=2e-18  Score=115.24  Aligned_cols=70  Identities=14%  Similarity=0.334  Sum_probs=64.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L  155 (174)
                      +++|+++++|+||+|||+|.|. ++.+++.+.+|.|+|||+++++++++||++.++++++... +.++|..|
T Consensus        48 k~kT~v~rktlnPvfnE~f~F~-v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          48 EAQTALKKLALHTQWEEELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EEEcceecCCCCCccccEEEEe-CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            5789999999999999999999 9999999999999999999999999999999999987544 66789765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.68  E-value=1.2e-16  Score=108.79  Aligned_cols=71  Identities=30%  Similarity=0.607  Sum_probs=64.7

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~  156 (174)
                      ++||++++++.||+|||+|.|. ++..++....|.++|||++.++++++||++.|++.++... ....||+|+
T Consensus        54 ~~kT~v~~~t~nP~~nE~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          54 KRKTSVKKKTLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             cccCccCcCCCCCccCceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            5799999999999999999999 8887888889999999999999999999999999998766 457899985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.67  E-value=1.7e-16  Score=108.09  Aligned_cols=71  Identities=31%  Similarity=0.622  Sum_probs=63.5

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT   74 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~   74 (174)
                      ++||+++++++||.|||+|.|. ++.+++....|.|.|||++.++++++||++.++|+.+.... ...|++|+
T Consensus        54 ~~kT~v~~~t~nP~~nE~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          54 KRKTSVKKKTLNPVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             cccCccCcCCCCCccCceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            5799999999999999999998 98888887899999999999999999999999999987654 34599884

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.67  E-value=2e-16  Score=107.24  Aligned_cols=70  Identities=27%  Similarity=0.516  Sum_probs=63.2

Q ss_pred             CCccccccCCCCCccccEEEeCcc-ccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGI-RRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~-~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L  155 (174)
                      ++||++++++.||+|||+|.|. + +..++....|.|+|||++.++++++||++.|++.++.... ...||+|
T Consensus        50 ~~kT~v~~~~~nP~wnE~F~f~-~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          50 KRKTKVVRKTRNPTFNEMLVYD-GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             ceeCCccCCCCCCCcccEEEEe-cCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            5799999999999999999998 6 6666777899999999999999999999999999988774 5799987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.67  E-value=2.5e-16  Score=107.21  Aligned_cols=72  Identities=36%  Similarity=0.597  Sum_probs=63.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~   74 (174)
                      .++||+++++++||.|||+|.|. ++.+.+....|.|.|||++.++++++||++.++++.+.... ...|++|+
T Consensus        53 ~~~kT~v~~~t~nP~wnE~f~f~-i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          53 SKRKTSIKRNTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             cceEeeeeeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            36799999999999999999998 98887777889999999999999999999999999987655 44599984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.67  E-value=1.3e-16  Score=108.34  Aligned_cols=70  Identities=21%  Similarity=0.384  Sum_probs=64.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--CcCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~~~W~~L  155 (174)
                      ++||++++++.||+|||+|.|+ ++.+++.+.+|.++|||++..+++++||.+.|+++++...  +..+||.|
T Consensus        53 ~~kT~v~~~t~nPvfnE~F~f~-v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          53 LFRTKALEDQDKPVFNEVFRVP-ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             eEEcCccCCCCCCccccEEEEE-CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            4789999999999999999999 9999999999999999999999999999999999998655  36789986

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.66  E-value=1.9e-16  Score=107.86  Aligned_cols=71  Identities=35%  Similarity=0.615  Sum_probs=64.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~  156 (174)
                      ++||++++++.||+|||+|.|. ++.+++.+..|.|+|||++..+++++||++.+++.++... ..+.||+|+
T Consensus        54 ~~kT~v~~~t~nP~wnE~f~f~-i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          54 KRKTSIKRNTTNPVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ceEeeeeeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            4789999999999999999999 9888887789999999999999999999999999999777 567999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.66  E-value=3.1e-16  Score=106.33  Aligned_cols=71  Identities=28%  Similarity=0.504  Sum_probs=62.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCc-CcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGI-RRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v-~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L   73 (174)
                      .++||+++++++||.|||+|.|+ + +.+++....|.|.|||++.++++++||++.++|+.+.... ...||+|
T Consensus        49 ~~~kT~v~~~~~nP~wnE~F~f~-~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          49 TKRKTKVVRKTRNPTFNEMLVYD-GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CceeCCccCCCCCCCcccEEEEe-cCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            36899999999999999999998 6 6677777899999999999999999999999999987655 4559987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.66  E-value=3.9e-16  Score=105.20  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=62.0

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcC-cCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC-ceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRS-DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-EWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~-~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~~   76 (174)
                      +++|+++.+++||+|||+|.|. +..+ .+....|.|.|||++..+.+++||++.++++.+...+.. .|++|.+.
T Consensus        39 k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          39 KFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             EeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            5689999999999999999998 8754 455678999999999888899999999999998866544 49999653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.65  E-value=3.6e-16  Score=107.90  Aligned_cols=71  Identities=21%  Similarity=0.359  Sum_probs=60.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++||+++++++||+|||.|.|. ++.+++.+.+|.|+|||++.++++++||++.|++... ..+.++|..+..
T Consensus        55 kkkT~v~k~t~nPvfNE~f~F~-v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~-g~~~~hW~~ml~  125 (138)
T cd08407          55 KKQTKRAKHKINPVWNEMIMFE-LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTS-GTERQHWEEMLD  125 (138)
T ss_pred             eeccceeeCCCCCccccEEEEE-CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCC-CcHHHHHHHHHh
Confidence            5789999999999999999999 9999999899999999999999999999999999752 113345655433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.65  E-value=2.8e-16  Score=106.62  Aligned_cols=71  Identities=21%  Similarity=0.389  Sum_probs=63.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L   73 (174)
                      .++||+++++++||+|||+|.|+ ++.+++...+|.|.|||++.++++++||.+.++|+++....  ...||.|
T Consensus        52 ~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          52 CLFRTKALEDQDKPVFNEVFRVP-ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             ceEEcCccCCCCCCccccEEEEE-CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            37899999999999999999998 99999999999999999999999999999999999986553  3348875

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.64  E-value=4e-16  Score=106.57  Aligned_cols=71  Identities=24%  Similarity=0.424  Sum_probs=63.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC----CcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~----~~~~W~~L~  156 (174)
                      ++||++++++.||+|||+|.|. ++..++.+..|.++|||.+.++++++||++.|++.++...    ...+||+|.
T Consensus        54 k~kT~v~~~t~nPvfNE~F~f~-v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          54 KRKTAVKKGTVNPVFNETLKYV-VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             eeecccccCCCCCccceEEEEE-cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            5699999999999999999999 9888888889999999999999999999999999998654    345999983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.64  E-value=7.5e-16  Score=107.11  Aligned_cols=72  Identities=22%  Similarity=0.398  Sum_probs=63.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEE-eCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~-d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~  160 (174)
                      ++||+++++++||+|||+|.|. +.   +.+..|.|+|| |++.++++++||++.|+|+++... ....||+|.+..+
T Consensus        68 k~KT~v~kktlnPvfNE~F~f~-v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~  141 (146)
T cd04028          68 KKKTKIARKTLDPLYQQQLVFD-VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS  141 (146)
T ss_pred             ceeceecCCCCCCccCCeEEEE-Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence            6799999999999999999999 76   45688999999 688888999999999999998655 5679999997543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.64  E-value=6.5e-16  Score=105.53  Aligned_cols=71  Identities=27%  Similarity=0.432  Sum_probs=63.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC----CCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD----EPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~----~~~w~~L   73 (174)
                      .++||+++++++||+|||+|.|. ++.+++....|.+.|||++.++++++||++.++|+++...+    ...||+|
T Consensus        53 ~k~kT~v~~~t~nPvfNE~F~f~-v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          53 SKRKTAVKKGTVNPVFNETLKYV-VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             ceeecccccCCCCCccceEEEEE-cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            36799999999999999999998 98888888899999999999999999999999999986653    2459987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.63  E-value=1.8e-15  Score=102.91  Aligned_cols=72  Identities=17%  Similarity=0.383  Sum_probs=63.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      ++||+++++ .||+|||+|.|+.++..++.+..|.++|||++.++++++||++.|+++++... ....|++|+|
T Consensus        52 ~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          52 RAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             eeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            578999887 99999999999746777788899999999999999999999999999999776 4568999975

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.63  E-value=1e-15  Score=104.10  Aligned_cols=73  Identities=16%  Similarity=0.359  Sum_probs=63.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~   75 (174)
                      +++||+++++ +||+|||+|.|+.++.+++...+|.+.|||++.++++++||++.++|+.+.... ...|++|++
T Consensus        51 ~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          51 QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             ceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            5679999888 999999999997577788888999999999999999999999999999987654 345999874

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.63  E-value=7.2e-16  Score=103.93  Aligned_cols=72  Identities=21%  Similarity=0.336  Sum_probs=62.5

Q ss_pred             CccccccCCCCCccccEEEeCccccC-CCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRS-DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH  158 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~-~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~  158 (174)
                      ++|+++++++||+|||+|.|. ++.. .+....|.|.|||++..+++++||++.|++.++..++ ...|++|...
T Consensus        40 ~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          40 FATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             eeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            579999999999999999999 8754 4566789999999998888999999999999998774 4689999764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.62  E-value=2e-15  Score=105.01  Aligned_cols=71  Identities=24%  Similarity=0.441  Sum_probs=61.3

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEE-eCCCCCCCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~-d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~   77 (174)
                      |+||+++++|+||+|||+|.|. +.   +....|.|.|| |++.++++++||++.|+|+.+.... ...||+|.+..
T Consensus        68 k~KT~v~kktlnPvfNE~F~f~-v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028          68 KKKTKIARKTLDPLYQQQLVFD-VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             ceeceecCCCCCCccCCeEEEE-Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            7899999999999999999998 76   45678999999 6888889999999999999986554 34599997653

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.62  E-value=1.9e-15  Score=105.53  Aligned_cols=77  Identities=22%  Similarity=0.532  Sum_probs=65.6

Q ss_pred             CCccccccCCCCCccccEEEeCccc-------------cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--Cc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DE  149 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~-------------~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~  149 (174)
                      +++|+++++++||+|||+|.|. +.             ..++....|.|.|||.+..++++|||++.|++.++...  ..
T Consensus        36 ~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~  114 (148)
T cd04010          36 TKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSH  114 (148)
T ss_pred             ccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcC
Confidence            4789999999999999999998 73             33455578999999999888999999999999998875  45


Q ss_pred             CceeecccCCCCC
Q psy6192         150 PEWFYLTKHKNSG  162 (174)
Q Consensus       150 ~~W~~L~~~~~~~  162 (174)
                      ..||+|.+.....
T Consensus       115 ~~W~~L~~~~~~~  127 (148)
T cd04010         115 QAWYFLQPREEKS  127 (148)
T ss_pred             cceeecCCccccc
Confidence            7999999876554

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.62  E-value=2.1e-15  Score=104.00  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++||+++++++||+|||+|.|. ++..++.+..|.|+|||++.++++++||++.|+.... ..+.++|..+..
T Consensus        53 k~kT~v~k~t~nP~~nE~f~F~-v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~-g~~~~hW~~ml~  123 (136)
T cd08406          53 KKKTSVKRDDTNPIFNEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS-GMGLSHWNQMLA  123 (136)
T ss_pred             ccCCccccCCCCCeeceeEEEE-CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC-ChhHHHHHHHHH
Confidence            5789999999999999999999 9988898899999999999999999999999988642 224557776554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.60  E-value=2.6e-15  Score=102.02  Aligned_cols=72  Identities=19%  Similarity=0.452  Sum_probs=64.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      +++|++++++.||+|||+|.|. ++..++....|.|+|||++.++++++||++.++++++..+ ....||+|+.
T Consensus        52 ~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~  124 (124)
T cd08387          52 TKQSKIHKKTLNPEFDESFVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS  124 (124)
T ss_pred             cEeCceEcCCCCCCcccEEEEe-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence            4789999999999999999998 8877777788999999999999999999999999999766 5679999963

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.59  E-value=4.3e-15  Score=101.53  Aligned_cols=74  Identities=24%  Similarity=0.393  Sum_probs=62.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---CceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---PEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~~w~~L~~   75 (174)
                      +++||+++++++||.|||+|.|..++.+++....|.|.|||++.++++++||++.++|+++...+.   ..|.+|++
T Consensus        52 ~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          52 HKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             ceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            456999999999999999999943776777667899999999999999999999999999876522   23888864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.58  E-value=6e-15  Score=100.24  Aligned_cols=71  Identities=51%  Similarity=0.936  Sum_probs=61.4

Q ss_pred             CCccccccCCCCCccccEEEeCccc-cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIR-RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~-~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~  156 (174)
                      +++|++++++.||+|||+|.|. +. ..++....|.|+|||.+..+++++||++.+++.+....+.++||+|+
T Consensus        54 ~~kT~v~~~t~nP~wne~f~f~-~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          54 KRRTKTVKKTLNPEWNQTFEYS-NVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             cccccccCCCCCCccccEEEEc-ccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            5789999999999999999998 53 35566688999999999998999999999999985555667999985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.58  E-value=4.8e-15  Score=100.68  Aligned_cols=71  Identities=25%  Similarity=0.451  Sum_probs=63.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~  156 (174)
                      +++|++++++.||+|||.|.|. ++..++....|.|+|||++.++++++||++.++++++..+ ..++|+.|.
T Consensus        52 ~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          52 KFETKVHRKTLNPVFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             ceecccCcCCCCCceeeeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            4689999999999999999999 8776666688999999999999999999999999998766 567999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.57  E-value=7.9e-15  Score=99.63  Aligned_cols=72  Identities=18%  Similarity=0.433  Sum_probs=63.2

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~   74 (174)
                      +++||++++++.||.|||+|.|. ++.+.+....|.|.|||++.++++++||++.++++++...+ ...|+.|+
T Consensus        51 ~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          51 NTKQSKIHKKTLNPEFDESFVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CcEeCceEcCCCCCCcccEEEEe-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            35789999999999999999998 88877777789999999999999999999999999987544 44599985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.57  E-value=8.3e-15  Score=102.29  Aligned_cols=75  Identities=23%  Similarity=0.502  Sum_probs=63.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcC-------------cCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC--C
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--D   66 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~-------------~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~--~   66 (174)
                      .++||+++++|+||+|||+|.|. +.             .+++....|.|.|||++..+++++||++.+++..+...  .
T Consensus        35 ~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~  113 (148)
T cd04010          35 DTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGS  113 (148)
T ss_pred             cccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCc
Confidence            46789999999999999999998 63             34555568999999999999999999999999998765  3


Q ss_pred             CCceEEecccc
Q psy6192          67 EPEWFYLTKHT   77 (174)
Q Consensus        67 ~~~w~~L~~~~   77 (174)
                      ...||+|.+..
T Consensus       114 ~~~W~~L~~~~  124 (148)
T cd04010         114 HQAWYFLQPRE  124 (148)
T ss_pred             CcceeecCCcc
Confidence            45699997764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.57  E-value=9.8e-15  Score=99.19  Aligned_cols=73  Identities=52%  Similarity=0.963  Sum_probs=60.8

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      .++||+++++++||.|||+|.|..+..+++....|.|.|||++..+++++||++.++|++........||+|+
T Consensus        53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            4678999999999999999999723435555678999999999999999999999999985444556799984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.56  E-value=8.8e-15  Score=99.14  Aligned_cols=70  Identities=36%  Similarity=0.671  Sum_probs=63.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L  155 (174)
                      +++|++++++.||+|||+|.|. +...++....|.|+|||.+..+++++||++.+++.++..+ ...+||+|
T Consensus        53 ~~kT~v~~~t~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          53 KRKTSVKKNTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eeeccccCCCCCCcccceEEEe-CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            4789999999999999999998 8877777789999999999999999999999999999665 46799987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.56  E-value=1.1e-14  Score=98.91  Aligned_cols=72  Identities=26%  Similarity=0.446  Sum_probs=62.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~   74 (174)
                      +++||++++++.||.|||+|.|. ++..++....|.|.|||++.++++++||++.++++++.... ...|++|.
T Consensus        51 ~~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          51 KKFETKVHRKTLNPVFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CceecccCcCCCCCceeeeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            35799999999999999999998 87766666789999999999999999999999999886544 44599885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.56  E-value=1.6e-14  Score=98.20  Aligned_cols=74  Identities=31%  Similarity=0.529  Sum_probs=61.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~   75 (174)
                      +++||+++++++||.|||+|.|..++.+.+....|.+.|||++.++++++||++.++++++..... ..|+.|++
T Consensus        51 ~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          51 HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            457999999999999999999973344555567899999999999999999999999999876544 45999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.55  E-value=1.4e-14  Score=98.74  Aligned_cols=73  Identities=22%  Similarity=0.383  Sum_probs=60.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCc---CcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC---CCCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRR---SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~---~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~---~~~~w~~L~~   75 (174)
                      +++||+++++++||+|||+|.|. +..   ++.....|.|.|||++.++++++||.+.++|+++...   ....|++|.+
T Consensus        31 ~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~  109 (126)
T cd08682          31 EKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES  109 (126)
T ss_pred             eeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence            56899999999999999999997 765   2344578999999999999999999999999987632   2345999964

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.55  E-value=4.8e-15  Score=101.32  Aligned_cols=71  Identities=18%  Similarity=0.374  Sum_probs=59.3

Q ss_pred             CCccccccCCC-CCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~-~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++||+++++|. +|+|||+|.|+ ++.+.. +.+|.|+|||++..+++++||++.|+.++....+.+||..+..
T Consensus        52 KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~  123 (135)
T cd08692          52 KKKTRLVKSSNGQVKWGETMIFP-VTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIA  123 (135)
T ss_pred             eecCccEECCCCCceecceEEEe-CCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHh
Confidence            68999999995 69999999999 987654 5899999999999999999999999998754445567776543

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.55  E-value=9e-15  Score=99.67  Aligned_cols=72  Identities=21%  Similarity=0.401  Sum_probs=61.7

Q ss_pred             CCccccccCCCCCccccEEEeCcccc---CCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC--C-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRR---SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC--T-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~---~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~--~-~~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|. ++.   .+.....|.++|||.+.++++++||++.|++.++..  + ...+||+|.+
T Consensus        32 ~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~  109 (126)
T cd08682          32 KYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES  109 (126)
T ss_pred             eeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence            5799999999999999999998 765   234557899999999999899999999999999873  2 4569999986

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.55  E-value=9.1e-15  Score=97.35  Aligned_cols=72  Identities=24%  Similarity=0.505  Sum_probs=64.1

Q ss_pred             CCccccccCCCCCcc-ccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC----CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~w-ne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~----~~~~W~~L~~  157 (174)
                      ++||++++++.||+| ||.|.|. ++..++.+..|.|+|||.+.++++++||++.+++.++...    ....||+|.+
T Consensus        33 ~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          33 TYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             eEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            579999999999999 9999998 8877776689999999999999999999999999998873    3579999965

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.55  E-value=1.2e-14  Score=98.97  Aligned_cols=71  Identities=23%  Similarity=0.499  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC--CCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLCT-DEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~--~~~~~iG~~~l~l~~~~~~-~~~~W~~L~  156 (174)
                      +++|++++++.||+|||+|.|. +...++....|.|.|||.+.+  +++++||++.+++.++... ...+||+|.
T Consensus        54 ~~kT~v~~~~~nP~wne~f~f~-i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          54 RRKTSVKKDNLNPVFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             eEecccccCCCCCEECeEEEEe-cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            5799999999999999999999 887777778999999998875  6899999999999998766 457999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.54  E-value=3.9e-15  Score=102.98  Aligned_cols=72  Identities=15%  Similarity=0.326  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++||++++++.||+|||+|.|. ++..++.+.+|.|+|||.+.++++++||++.|++......+.++|+.+..
T Consensus        54 ~~kT~v~~~t~nPvfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~  125 (138)
T cd08408          54 KSKTSIRRGQPDPEFKETFVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKE  125 (138)
T ss_pred             eccceeecCCCCCcEeeeEEEE-CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHh
Confidence            4799999999999999999999 99888888999999999999999999999999998654444567777654

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.54  E-value=1.9e-14  Score=97.78  Aligned_cols=73  Identities=29%  Similarity=0.522  Sum_probs=62.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|..++...+....|.++|||++..+++++||++.+++.++... ....|+.|++
T Consensus        52 ~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          52 KLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             ceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            479999999999999999999722344455578999999999999999999999999998866 5579999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.54  E-value=9.1e-15  Score=98.68  Aligned_cols=69  Identities=19%  Similarity=0.510  Sum_probs=59.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC-CCceeEEEEEeCCcCCCC-CcCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT-DEPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~-~~~~iG~~~l~l~~~~~~-~~~~W~~L  155 (174)
                      ++||++++++.||+|||+|.|. ++..++. ..|.|+|||.+... ++++||.+.|++.++..+ ...+||.|
T Consensus        49 ~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          49 RQKTSTVPDSANPLFHETFSFD-VNERDYQ-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             eEeCccccCCCCCccccEEEEE-cChHHhC-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            4689999999999999999998 8776665 57899999998775 478999999999999755 46799987

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.54  E-value=1.8e-14  Score=98.50  Aligned_cols=73  Identities=22%  Similarity=0.367  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC---CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~---~~~~W~~L~~  157 (174)
                      ++||++++++.||+|||+|.|..++..++.+..|.++|||++.++++++||++.+++.++...   +...|.+|++
T Consensus        53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            368999999999999999999326666776678999999999999999999999999998765   3458999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.53  E-value=2.6e-14  Score=96.79  Aligned_cols=71  Identities=37%  Similarity=0.652  Sum_probs=61.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L   73 (174)
                      .++||++++++.||.|||+|.|. +..+++....|.|.|||++.++++++||++.++|+++.... ...||+|
T Consensus        52 ~~~kT~v~~~t~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          52 SKRKTSVKKNTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             ceeeccccCCCCCCcccceEEEe-CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            35789999999999999999998 88777767789999999999999999999999999986544 3459986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.53  E-value=2.6e-14  Score=97.39  Aligned_cols=72  Identities=22%  Similarity=0.502  Sum_probs=62.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC--CCCceEEEEEEecccccCCCC-CceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLCTDE-PEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~--~~~~~lG~~~~~l~~~~~~~~-~~w~~L~   74 (174)
                      .++||++++++.||.|||+|.|. +..+.+....|.|.|||.+.+  +++++||++.++++++..... ..|++|+
T Consensus        53 ~~~kT~v~~~~~nP~wne~f~f~-i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          53 TRRKTSVKKDNLNPVFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ceEecccccCCCCCEECeEEEEe-cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            46799999999999999999998 887777778899999999976  689999999999999865543 4599884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.53  E-value=3.5e-14  Score=95.30  Aligned_cols=76  Identities=24%  Similarity=0.300  Sum_probs=63.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecccceEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKHTLEL   80 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~~~~l   80 (174)
                      ++++|+++++|+||.|||+|.|. +...  ....|.|.|||++..+++++||.+.++++++..... ..|++|.+..+.+
T Consensus        32 ~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~G~~  108 (116)
T cd08376          32 EKYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSL  108 (116)
T ss_pred             EeEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCCCcEE
Confidence            46899999999999999999997 6543  246899999999999999999999999998776544 3499998775554

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.52  E-value=4e-14  Score=95.93  Aligned_cols=72  Identities=19%  Similarity=0.422  Sum_probs=63.0

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC-ceEEecc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-EWFYLTK   75 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~   75 (174)
                      .++|++++++.||.|||+|.|. ++...+....|.|.|||++..+++++||++.++|+++...... .|++|.+
T Consensus        51 ~~~T~v~~~~~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          51 SLQSKVKRKTQNPNFDETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             ceEeeeEcCCCCCccceEEEEE-cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            4689999999999999999998 8877766678999999999999999999999999998766544 5999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.51  E-value=4.8e-14  Score=96.67  Aligned_cols=79  Identities=28%  Similarity=0.561  Sum_probs=68.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc--CCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK--HKNSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~--~~~~~  162 (174)
                      +++|++++++.+|.|||+|.|. +...+. ...|.|+|||.+..+++++||++.+++.++.....+.||+|.+  +|++.
T Consensus        51 ~~rT~v~~~~~~P~wne~f~~~-~~~~~~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~~~  128 (131)
T cd04026          51 KQKTKTIKKTLNPVWNETFTFD-LKPADK-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGEYY  128 (131)
T ss_pred             eecceeecCCCCCCccceEEEe-CCchhc-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCccccccc
Confidence            4799999999999999999998 765543 3789999999998889999999999999988667779999988  67777


Q ss_pred             CCC
Q psy6192         163 SNP  165 (174)
Q Consensus       163 ~~~  165 (174)
                      |+|
T Consensus       129 ~~~  131 (131)
T cd04026         129 NVP  131 (131)
T ss_pred             cCC
Confidence            764

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.51  E-value=3.2e-14  Score=96.38  Aligned_cols=71  Identities=21%  Similarity=0.433  Sum_probs=63.3

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      ++|++++++.||+|||.|.|. ++..++....|.|.|||.+..+++++||++.++++++... ....|++|.+
T Consensus        52 ~~T~v~~~~~~P~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          52 LQSKVKRKTQNPNFDETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             eEeeeEcCCCCCccceEEEEE-cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            689999999999999999998 8877776678999999999988899999999999998877 4569999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.51  E-value=4.8e-14  Score=93.87  Aligned_cols=73  Identities=23%  Similarity=0.467  Sum_probs=62.6

Q ss_pred             ceEeceeecCCCCCcc-CceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC----CCCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w-~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~----~~~~w~~L~~   75 (174)
                      +++||+++++++||.| ||+|.|. +....+....|.|.|||++.++++++||++.++++.+...    ....||+|.+
T Consensus        32 ~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          32 TTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             eeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            4689999999999999 9999998 8777665678999999999999999999999999998763    2345999853

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>KOG1013|consensus

Probab=99.50  E-value=1.5e-14  Score=109.84  Aligned_cols=140  Identities=24%  Similarity=0.403  Sum_probs=110.6

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCc---eEE--ec---
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE---WFY--LT---   74 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~---w~~--L~---   74 (174)
                      +.||++..+++||.|+|+.++..+..+++....+++.++|.+.+..++++|+..+.+..+.......   |+.  +.   
T Consensus       131 slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r  210 (362)
T KOG1013|consen  131 SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER  210 (362)
T ss_pred             hhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc
Confidence            3678899999999999999888788888888999999999999999999999998776544322111   211  11   


Q ss_pred             -------ccc---eEecc-----------------------------------C-----CCCccccccCCCCCccccEEE
Q psy6192          75 -------KHT---LELQF-----------------------------------P-----LSNLSKTLANTNDPKWNQSFF  104 (174)
Q Consensus        75 -------~~~---~~l~~-----------------------------------p-----~~~kT~~~~~t~~P~wne~~~  104 (174)
                             ..+   .++.|                                   |     .++||.+.|++.+|.||+.|.
T Consensus       211 ad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~  290 (362)
T KOG1013|consen  211 ADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFF  290 (362)
T ss_pred             ccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccc
Confidence                   000   01111                                   1     178999999999999999999


Q ss_pred             eCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCc
Q psy6192         105 YPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS  143 (174)
Q Consensus       105 f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~  143 (174)
                      |. +.+.++....+.|+|||++.....+++|.+.+++..
T Consensus       291 ~~-i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r  328 (362)
T KOG1013|consen  291 YD-IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR  328 (362)
T ss_pred             cc-CCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence            99 999999999999999999998899999998887764

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.50  E-value=5.1e-14  Score=96.06  Aligned_cols=75  Identities=24%  Similarity=0.360  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCccccEEEeCcccc-CCCCcceEEEEEEeCCCCC-CCceeEEEEEeCCcCCCC--CcCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRR-SDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT--DEPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~-~~~~~~~l~i~v~d~~~~~-~~~~iG~~~l~l~~~~~~--~~~~W~~L~~~~~  160 (174)
                      +++|++++++.||+|||.|.|. +.. ..+....|.|+|||.+.+. ++++||++.+++.++...  ...+||+|...+.
T Consensus        33 ~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~  111 (127)
T cd04022          33 KKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL  111 (127)
T ss_pred             EecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC
Confidence            4789999999999999999998 753 3344578999999998886 899999999999998743  3569999998654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG0696|consensus

Probab=99.50  E-value=4e-15  Score=117.04  Aligned_cols=73  Identities=32%  Similarity=0.621  Sum_probs=65.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      -|++|++++.++||+|||+|.|. +..++.. ++|.|+|||+|+.++++|+|+.++.++++...+...||.|...
T Consensus       217 sKqKTkTik~~LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsq  289 (683)
T KOG0696|consen  217 SKQKTKTIKATLNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQ  289 (683)
T ss_pred             hhhhhhhhhhhcCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhh
Confidence            36899999999999999999998 8887765 7899999999999999999999999999988888889987644

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.50  E-value=5.5e-14  Score=95.14  Aligned_cols=69  Identities=20%  Similarity=0.393  Sum_probs=60.9

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      ++|+++++|.||+|||.|.|. ++..   ...|.|.|||.+.++++++||.+.++++++... ..+.||+|++.
T Consensus        36 ~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  105 (121)
T cd08401          36 FRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV  105 (121)
T ss_pred             EEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc
Confidence            689999999999999999998 7743   268999999999999999999999999998765 45789999984

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.50  E-value=6.5e-14  Score=93.34  Aligned_cols=74  Identities=23%  Similarity=0.492  Sum_probs=60.7

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCc--CcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC----CceEEec
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRR--SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE----PEWFYLT   74 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~--~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~----~~w~~L~   74 (174)
                      +++++|++++++.||.|||+|.|. +..  .++....|.|.|||++.++++++||++.++|+.+.....    ..|++|.
T Consensus        31 ~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          31 GQKKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             CEeeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence            467899999999999999999997 433  334457899999999999999999999999998865432    2499986


Q ss_pred             c
Q psy6192          75 K   75 (174)
Q Consensus        75 ~   75 (174)
                      +
T Consensus       110 ~  110 (111)
T cd04011         110 D  110 (111)
T ss_pred             C
Confidence            5

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.50  E-value=1.8e-14  Score=99.38  Aligned_cols=73  Identities=25%  Similarity=0.415  Sum_probs=62.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||+|.|. ++..++.+..|.|+|||++..+++++||++.|+.........++|+.|.+.
T Consensus        52 ~~kT~v~~~t~nP~wnE~F~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~  124 (135)
T cd08410          52 TKKTSCMRGTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNS  124 (135)
T ss_pred             eEcCccccCCCCCccceeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhC
Confidence            4789999999999999999999 887778777899999999999999999999988755444345788887664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.49  E-value=5.5e-14  Score=94.86  Aligned_cols=69  Identities=19%  Similarity=0.508  Sum_probs=58.1

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC-CCceEEEEEEecccccCCC-CCceEEe
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCTD-EPEWFYL   73 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~-~~~~lG~~~~~l~~~~~~~-~~~w~~L   73 (174)
                      ++||+++++++||.|||+|.|. ++.+++. ..|.|.|||++..+ ++++||.+.|++.++.... ...||.|
T Consensus        49 ~~kT~v~~~t~~P~~nE~F~f~-v~~~~~~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          49 RQKTSTVPDSANPLFHETFSFD-VNERDYQ-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             eEeCccccCCCCCccccEEEEE-cChHHhC-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            5689999999999999999998 8777664 56889999999876 4789999999999987544 3459876

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.49  E-value=7.4e-14  Score=99.08  Aligned_cols=75  Identities=31%  Similarity=0.610  Sum_probs=62.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      .++||+++++++||.|||+|.|..++.+++....|.|.|||++.++++++||++.+.++.+.... ..+|+.+...
T Consensus        64 ~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~  139 (162)
T cd04020          64 SKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE  139 (162)
T ss_pred             cceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence            46799999999999999999997344556666789999999999999999999999999876543 4558888654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.49  E-value=1.3e-13  Score=93.27  Aligned_cols=71  Identities=32%  Similarity=0.681  Sum_probs=59.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC------cCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD------EPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~------~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||.|.|. +.  .+....|.++|||.+.. ++++||++.++++++....      ..+||+|.+.
T Consensus        29 ~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~  104 (121)
T cd08378          29 KGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK  104 (121)
T ss_pred             cccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCC
Confidence            5799999999999999999998 54  33457899999999877 8899999999999987542      3589999885


Q ss_pred             C
Q psy6192         159 K  159 (174)
Q Consensus       159 ~  159 (174)
                      .
T Consensus       105 ~  105 (121)
T cd08378         105 K  105 (121)
T ss_pred             C
Confidence            4

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.48  E-value=9.3e-14  Score=94.44  Aligned_cols=71  Identities=18%  Similarity=0.364  Sum_probs=60.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC------CCceeEEEEEeCCcCCCCC-cCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG------VNDFLGEVIIELSSSLCTD-EPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~------~~~~iG~~~l~l~~~~~~~-~~~W~~L~~  157 (174)
                      +.+|++++++.||+|||+|.|. +....   ..|.|+|||.+..+      ++++||++.+++.++..+. ...||+|.+
T Consensus        36 ~~rTk~~~~~~nP~WnE~f~f~-v~~~~---~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          36 WVRTRTVEDSSNPRWNEQYTWP-VYDPC---TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             EeEcCcccCCCCCcceeEEEEE-ecCCC---CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence            4689999999999999999998 65322   47999999998763      8999999999999987764 479999987


Q ss_pred             CC
Q psy6192         158 HK  159 (174)
Q Consensus       158 ~~  159 (174)
                      ..
T Consensus       112 ~~  113 (126)
T cd08379         112 LN  113 (126)
T ss_pred             CC
Confidence            44

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.48  E-value=4.6e-14  Score=97.40  Aligned_cols=59  Identities=22%  Similarity=0.334  Sum_probs=55.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS   61 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~   61 (174)
                      +|+||+++++++||+|||+|.|. ++.+.+....|.|+|||++.++++++||.+.+.+..
T Consensus        54 ~kkkT~v~k~t~nPvfNE~f~F~-v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          54 KKKQTKRAKHKINPVWNEMIMFE-LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             ceeccceeeCCCCCccccEEEEE-CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence            36799999999999999999998 999999889999999999999999999999998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.48  E-value=2.6e-14  Score=98.62  Aligned_cols=72  Identities=21%  Similarity=0.344  Sum_probs=63.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      ++||++++++.||+|||+|.|. ++..++....|.|+|||++.++++++||++.+++.. ...+.++|+.|...
T Consensus        53 ~~kT~v~k~t~nP~w~e~F~f~-v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~~~~~~~w~~l~~~  124 (136)
T cd08404          53 KKKTHVKKCTLNPVFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-SGSGGHHWKEVCNP  124 (136)
T ss_pred             eEcCccccCCCCCccCceEEEE-CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-CCchHHHHHHHHhC
Confidence            4789999999999999999999 887777768899999999999999999999999998 44466789988664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.48  E-value=7.1e-14  Score=99.20  Aligned_cols=73  Identities=30%  Similarity=0.632  Sum_probs=60.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      ++||++++++.||+|||.|.|..+...++.+..|.|+|||++.++++++||++.+++.++... ..+.|+.|.+
T Consensus        65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            579999999999999999999722345666678999999999998999999999999998655 3456776654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.48  E-value=1.1e-13  Score=94.12  Aligned_cols=72  Identities=18%  Similarity=0.336  Sum_probs=59.2

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC------CCceEEEEEEecccccCCCC-CceEEe
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG------VNDFLGEVIIELSSSLCTDE-PEWFYL   73 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~------~~~~lG~~~~~l~~~~~~~~-~~w~~L   73 (174)
                      +++.||+++++++||+|||+|.|. +...   ...|.|.|||++..+      .+++||++.++++.+..... ..|++|
T Consensus        34 ~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L  109 (126)
T cd08379          34 PKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPL  109 (126)
T ss_pred             CEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEe
Confidence            356799999999999999999997 6432   247999999999874      89999999999998876544 459999


Q ss_pred             ccc
Q psy6192          74 TKH   76 (174)
Q Consensus        74 ~~~   76 (174)
                      ...
T Consensus       110 ~~~  112 (126)
T cd08379         110 LSL  112 (126)
T ss_pred             EeC
Confidence            743

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.48  E-value=9.3e-14  Score=92.16  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=53.8

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT   65 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~   65 (174)
                      +++||+++++++||+|||+|.|. +..... ...|.|.|||++..+++++||.+.++|+.+...
T Consensus        37 ~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          37 RVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             EeEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence            46799999999999999999997 765443 368999999999999999999999999987643

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.48  E-value=1.4e-13  Score=93.02  Aligned_cols=69  Identities=19%  Similarity=0.405  Sum_probs=57.9

Q ss_pred             CCccccccC-CCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCC-cCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS-SSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~-t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~-~~~~~-~~~~W~~L~~  157 (174)
                      +.+|+++++ +.||+|||.|.|. ++..   ...|.|+|||.+.+++|++||.+.|++. .+..+ ....|++|.+
T Consensus        34 ~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~  105 (121)
T cd04016          34 VYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSG  105 (121)
T ss_pred             EEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcC
Confidence            368999865 7999999999998 7643   2579999999999999999999999996 45554 4679999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.47  E-value=2.4e-13  Score=92.00  Aligned_cols=72  Identities=32%  Similarity=0.682  Sum_probs=58.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC------CCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD------EPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~------~~~w~~L~~   75 (174)
                      +++||++++++.||.|||+|.|. +.  .+....|.|.|||++.. .+++||.+.++++.+....      ...|++|.+
T Consensus        28 ~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~  103 (121)
T cd08378          28 YKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLED  103 (121)
T ss_pred             ccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccC
Confidence            46799999999999999999997 54  33357899999999987 7899999999999876432      235999976


Q ss_pred             cc
Q psy6192          76 HT   77 (174)
Q Consensus        76 ~~   77 (174)
                      ..
T Consensus       104 ~~  105 (121)
T cd08378         104 KK  105 (121)
T ss_pred             CC
Confidence            54

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.47  E-value=3.2e-14  Score=98.36  Aligned_cols=72  Identities=15%  Similarity=0.298  Sum_probs=61.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|. ++..++....|.|+|||.+..+++++||++.|+......+ +.++|..|..
T Consensus        52 ~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          52 TKKTEVVDGAASPSFNESFSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             eeecccEeCCCCCcccceEEEE-CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            5789999999999999999999 9888888889999999999999999999999997644333 4567777654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.47  E-value=2.4e-13  Score=91.85  Aligned_cols=71  Identities=17%  Similarity=0.357  Sum_probs=57.7

Q ss_pred             ceEeceeecC-CCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc-ccCC-CCCceEEeccc
Q psy6192           2 FKEFAKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT-DEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~-t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~-~~~~-~~~~w~~L~~~   76 (174)
                      ++.||+++.+ +.||.|||+|.|. +...   ...|.|.|||++.+++|++||.+.+++.. +... ....|++|.+.
T Consensus        33 ~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~  106 (121)
T cd04016          33 AVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGK  106 (121)
T ss_pred             EEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCc
Confidence            4678999865 7999999999998 7643   24699999999999999999999999963 4433 35669999763

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.47  E-value=2.5e-13  Score=91.96  Aligned_cols=70  Identities=20%  Similarity=0.353  Sum_probs=59.6

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      ..||+++++|+||.|||+|.|. ++..   ...|.|.|||++.++++++||.+.++++++.... ...|++|++.
T Consensus        35 ~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  105 (121)
T cd08401          35 VFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV  105 (121)
T ss_pred             EEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc
Confidence            4689999999999999999998 7643   2579999999999999999999999999876443 4459999863

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.47  E-value=1.6e-13  Score=93.58  Aligned_cols=74  Identities=26%  Similarity=0.379  Sum_probs=60.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCc-CcCCcceEEEEEEeCCCCC-CCceEEEEEEecccccCC--CCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRR-SDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT--DEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~-~~~~~~~L~i~v~d~~~~~-~~~~lG~~~~~l~~~~~~--~~~~w~~L~~~   76 (174)
                      +++||++++++.||.|||+|.|. +.. ..+....|.|.|||++.++ .+++||++.++++.+...  ....|++|+..
T Consensus        32 ~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~  109 (127)
T cd04022          32 QKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR  109 (127)
T ss_pred             EEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC
Confidence            56899999999999999999998 653 3333468999999999887 899999999999987732  23459999754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.46  E-value=5.8e-14  Score=96.48  Aligned_cols=72  Identities=29%  Similarity=0.576  Sum_probs=61.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||+|.|. +...++....|.|+|||++..+++++||++.+++.+. ....++|+.++..
T Consensus        51 ~~kT~v~~~t~nP~wne~f~f~-~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~-~~~~~~W~~~l~~  122 (133)
T cd08384          51 KHKTQVKKKTLNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAK-GERLRHWLDCLKN  122 (133)
T ss_pred             CceeeeEeccCCCCcccEEEEE-CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCC-CchHHHHHHHHhC
Confidence            4799999999999999999998 8877777788999999999988999999999999852 2345689987663

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.46  E-value=2.6e-13  Score=93.74  Aligned_cols=75  Identities=24%  Similarity=0.594  Sum_probs=64.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccC-------------CCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRS-------------DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEP  150 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~-------------~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~  150 (174)
                      +++|++++++.||.|||.|.|. +...             ++....|.|+|||.+..++++|||++.+++.++... ...
T Consensus        35 ~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~  113 (137)
T cd08675          35 TKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQ  113 (137)
T ss_pred             eeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCccc
Confidence            4799999999999999999998 6543             335578999999999888999999999999998765 467


Q ss_pred             ceeecccCCC
Q psy6192         151 EWFYLTKHKN  160 (174)
Q Consensus       151 ~W~~L~~~~~  160 (174)
                      .||+|.+.+.
T Consensus       114 ~W~~L~~~~~  123 (137)
T cd08675         114 AWYFLQPREA  123 (137)
T ss_pred             ceEecCCcCC
Confidence            9999999653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.46  E-value=2.3e-13  Score=92.28  Aligned_cols=71  Identities=24%  Similarity=0.544  Sum_probs=61.4

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~  159 (174)
                      ++|++++++.||+|||.|.|. +....  ...|.|+|||++..+++++||++.+++.++... ..+.||.|.+.+
T Consensus        34 ~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~  105 (123)
T cd04025          34 LETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDP  105 (123)
T ss_pred             EeceeecCCCCCccCcEEEEE-cCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCC
Confidence            689999999999999999998 65433  478999999999998999999999999998765 457999999844

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.46  E-value=3.4e-13  Score=91.42  Aligned_cols=72  Identities=24%  Similarity=0.517  Sum_probs=60.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      ++.+|+++++++||.|||+|.|. +....  ...|.|.|||++..+.+++||.+.++++++.... ...|+.|.+.
T Consensus        32 ~~~kT~v~~~t~nP~Wne~f~f~-~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~  104 (123)
T cd04025          32 QTLETSVVKKSCYPRWNEVFEFE-LMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD  104 (123)
T ss_pred             EEEeceeecCCCCCccCcEEEEE-cCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCC
Confidence            45789999999999999999997 65543  4679999999999999999999999999876543 4559998753

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.45  E-value=2.7e-13  Score=95.04  Aligned_cols=73  Identities=22%  Similarity=0.297  Sum_probs=61.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcC------cCCcceEEEEEEeCCCC-CCCceEEEEEEecccccCCC-CCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRS------DLKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCTD-EPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~------~~~~~~L~i~v~d~~~~-~~~~~lG~~~~~l~~~~~~~-~~~w~~L   73 (174)
                      ++.||+++++|+||+|||+|.|. +...      .+....|.+.|||++.+ ++|++||.+.++|+.+.... ...|++|
T Consensus        41 ~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L  119 (155)
T cd08690          41 QSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDL  119 (155)
T ss_pred             ceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEh
Confidence            57899999999999999999998 8655      34567799999999986 57999999999999987654 3458887


Q ss_pred             cc
Q psy6192          74 TK   75 (174)
Q Consensus        74 ~~   75 (174)
                      ..
T Consensus       120 ~~  121 (155)
T cd08690         120 MD  121 (155)
T ss_pred             hh
Confidence            53

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.45  E-value=1.4e-13  Score=90.88  Aligned_cols=70  Identities=27%  Similarity=0.390  Sum_probs=58.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC---cCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~---~~~W~~L~~~~~  160 (174)
                      +++|++++++.||+|||.|.|. +...+  ...|.|+|||.+.   +++||++.+++.++....   ..+||+|.+.|+
T Consensus        33 ~~kT~v~~~t~nP~Wne~f~f~-v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g~  105 (105)
T cd04050          33 TQKSKVKERTNNPVWEEGFTFL-VRNPE--NQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSGP  105 (105)
T ss_pred             EEeCccccCCCCCcccceEEEE-eCCCC--CCEEEEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCCCCC
Confidence            4789999999999999999999 76533  3579999999876   789999999999987653   469999988763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.45  E-value=3.5e-13  Score=91.80  Aligned_cols=71  Identities=21%  Similarity=0.368  Sum_probs=60.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      +++||+++++|+||.|||+|.|. +...   ...|.|.|||++..+++++||.+.++++.+.... ...|++|.+.
T Consensus        31 ~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~  102 (126)
T cd08678          31 QKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGR  102 (126)
T ss_pred             cEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCC
Confidence            46799999999999999999998 7543   3579999999999999999999999999877554 4459998754

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>KOG1328|consensus

Probab=99.45  E-value=3.9e-14  Score=116.91  Aligned_cols=61  Identities=23%  Similarity=0.363  Sum_probs=54.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCC--cceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLK--LRSIEITVWDYTRYGVNDFLGEVIIELSSSLC  146 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~--~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~  146 (174)
                      .++|+|+++|+||+|+|.|.|. ++++...  ...+.++|+|+|.++.++|-|++.+.|+.+..
T Consensus       987 ~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen  987 VQKTKVVSRTLNPVFDETFEFS-VPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             hhhhhhhhccccchhhhheeee-cCccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence            5899999999999999999999 8765533  47899999999999999999999999998754

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.45  E-value=1.6e-13  Score=96.05  Aligned_cols=71  Identities=25%  Similarity=0.482  Sum_probs=60.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc--------Cceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--------PEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~--------~~W~~L~  156 (174)
                      +.||++++++.||+|||.|.|. +..+... ..|.|+|||.+..+++++||++.|++.++...+.        ++|+.|.
T Consensus        47 ~~kT~v~~~t~nPvWNE~f~f~-v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly  124 (151)
T cd04018          47 KVKTSVKKNSYNPEWNEQIVFP-EMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY  124 (151)
T ss_pred             eeecceEcCCCCCCcceEEEEE-eeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence            3689999999999999999998 6544444 6899999999999999999999999998876654        4777776


Q ss_pred             c
Q psy6192         157 K  157 (174)
Q Consensus       157 ~  157 (174)
                      +
T Consensus       125 g  125 (151)
T cd04018         125 G  125 (151)
T ss_pred             c
Confidence            5

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.45  E-value=4.1e-14  Score=97.88  Aligned_cols=70  Identities=17%  Similarity=0.330  Sum_probs=59.3

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL   73 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L   73 (174)
                      ++||++++++.||+|||+|.|. ++.+++....|.|.|||++.++++++||++.+.+..........|+.+
T Consensus        54 ~~kT~v~~~t~nPvfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~  123 (138)
T cd08408          54 KSKTSIRRGQPDPEFKETFVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEM  123 (138)
T ss_pred             eccceeecCCCCCcEeeeEEEE-CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHH
Confidence            5799999999999999999998 999888889999999999999999999999988864433223346665

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG1030|consensus

Probab=99.44  E-value=1.2e-13  Score=96.13  Aligned_cols=61  Identities=23%  Similarity=0.537  Sum_probs=53.4

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT   65 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~   65 (174)
                      +++.||+++.+++||+|||.|.|. +....   ..|.+.|||+|.+++||+||.++|++..+...
T Consensus        37 ~q~lkT~~v~~n~NPeWNe~ltf~-v~d~~---~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   37 NQKLKTRVVYKNLNPEWNEELTFT-VKDPN---TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA   97 (168)
T ss_pred             CeeeeeeeecCCCCCcccceEEEE-ecCCC---ceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence            467899999999999999999998 65443   56999999999999999999999999876543

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.44  E-value=1.2e-13  Score=92.01  Aligned_cols=70  Identities=19%  Similarity=0.508  Sum_probs=59.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      .++|++++++.||+|||.|.|. +...++ ....|.++|||++.++++++||++.+++.++.  +...|++|..
T Consensus        38 ~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~--~~~~~~~~~~  108 (111)
T cd04041          38 LYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI--EDRNWMGRRE  108 (111)
T ss_pred             cEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh--cCCCCCcccc
Confidence            3699999999999999999998 655443 34689999999999999999999999999886  5668888764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.44  E-value=2.7e-13  Score=91.45  Aligned_cols=71  Identities=28%  Similarity=0.433  Sum_probs=59.5

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~   76 (174)
                      +++||++++++.||.|||+|.|. +....  ...|.|.|||++.. ++++||++.++++.+..... ..|++|.+.
T Consensus        35 ~~~kT~vv~~t~nP~Wne~f~f~-i~~~~--~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~  106 (119)
T cd04036          35 EKKRTKTIKNSINPVWNETFEFR-IQSQV--KNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ  106 (119)
T ss_pred             ccCccceecCCCCCccceEEEEE-eCccc--CCEEEEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence            46799999999999999999997 76542  35799999999998 89999999999998775543 449999764

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.44  E-value=2.5e-13  Score=91.62  Aligned_cols=70  Identities=27%  Similarity=0.431  Sum_probs=60.7

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||.|.|. +...  ....|.|+|||.+.. ++++||++.+++.++..+ ....|++|.+.
T Consensus        36 ~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~  106 (119)
T cd04036          36 KKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ  106 (119)
T ss_pred             cCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence            5799999999999999999998 7654  235799999999988 899999999999998776 45789999875

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.44  E-value=3.8e-13  Score=94.33  Aligned_cols=72  Identities=24%  Similarity=0.366  Sum_probs=61.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccC------CCCcceEEEEEEeCCCC-CCCceeEEEEEeCCcCCCC-CcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRS------DLKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCT-DEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~------~~~~~~l~i~v~d~~~~-~~~~~iG~~~l~l~~~~~~-~~~~W~~L~  156 (174)
                      ++||+++++|+||+|||+|.|. +...      .+....|.++|||.+.+ ++|++||++.++|+.+... ....|++|.
T Consensus        42 k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~  120 (155)
T cd08690          42 SGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM  120 (155)
T ss_pred             eeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence            6899999999999999999999 8654      35567899999999876 5799999999999998776 456799987


Q ss_pred             c
Q psy6192         157 K  157 (174)
Q Consensus       157 ~  157 (174)
                      .
T Consensus       121 ~  121 (155)
T cd08690         121 D  121 (155)
T ss_pred             h
Confidence            5

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.44  E-value=3.1e-13  Score=94.62  Aligned_cols=65  Identities=28%  Similarity=0.503  Sum_probs=55.1

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE   67 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~   67 (174)
                      |++.||+++++++||+|||+|.|. +..... ...|.|+|||++..+++++||.+.++++.+.....
T Consensus        45 g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~-~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~  109 (151)
T cd04018          45 GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL-CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGD  109 (151)
T ss_pred             CEeeecceEcCCCCCCcceEEEEE-eeCCCc-CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCc
Confidence            456799999999999999999997 654443 36899999999999999999999999998765543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.44  E-value=5.5e-13  Score=90.94  Aligned_cols=73  Identities=27%  Similarity=0.407  Sum_probs=60.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~   75 (174)
                      .++||++++++.||.|||+|.|. +.........|.|.|||++..+.+++||.+.++++++..+.. ..|++|.+
T Consensus        26 ~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~   99 (127)
T cd08373          26 VKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLD   99 (127)
T ss_pred             EeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcC
Confidence            46899999999999999999998 654434457899999999999999999999999998876544 33888853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.43  E-value=2.8e-13  Score=90.86  Aligned_cols=71  Identities=24%  Similarity=0.341  Sum_probs=61.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      +++|+++++|.||.|||.|.|. +...  ....|.|+|||.+..+++++||++.++++++..+ ..+.|++|.+.
T Consensus        33 ~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~  104 (116)
T cd08376          33 KYKSKVCSKTLNPQWLEQFDLH-LFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG  104 (116)
T ss_pred             eEecccccCCCCCceeEEEEEE-ecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC
Confidence            4789999999999999999998 6543  2478999999999998999999999999998766 45689999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.43  E-value=9.3e-14  Score=95.85  Aligned_cols=72  Identities=22%  Similarity=0.411  Sum_probs=60.4

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||.|.|. ++..++....|.|+|||++.++++++||++.|++... ..+..+|+.|...
T Consensus        53 ~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~-~~~~~~W~~~~~~  124 (136)
T cd08402          53 KKKTTIKKRTLNPYYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT-GAELRHWSDMLAS  124 (136)
T ss_pred             eeeccceeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC-ChHHHHHHHHHhC
Confidence            4689999999999999999999 8877777678999999999999999999999999863 2244577776553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.42  E-value=7.4e-13  Score=91.50  Aligned_cols=75  Identities=24%  Similarity=0.557  Sum_probs=62.5

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcC-------------cCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-CC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRS-------------DLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DE   67 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~-------------~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-~~   67 (174)
                      +++||++++++.||.|||+|.|. +...             ++....|.|.|||++..+.+++||.+.+++..+... ..
T Consensus        34 ~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~  112 (137)
T cd08675          34 DTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSH  112 (137)
T ss_pred             CeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcc
Confidence            46899999999999999999998 5443             345678999999999998999999999999987654 34


Q ss_pred             CceEEecccc
Q psy6192          68 PEWFYLTKHT   77 (174)
Q Consensus        68 ~~w~~L~~~~   77 (174)
                      ..|++|.+.+
T Consensus       113 ~~W~~L~~~~  122 (137)
T cd08675         113 QAWYFLQPRE  122 (137)
T ss_pred             cceEecCCcC
Confidence            5699998764

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.42  E-value=1.3e-13  Score=95.19  Aligned_cols=71  Identities=24%  Similarity=0.383  Sum_probs=60.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|. ++..++.+..|.|+|||.+.++++++||++.+++.+. ....++|+.|..
T Consensus        53 ~~kT~v~~~t~~P~wne~F~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~-~~~~~~w~~~~~  123 (136)
T cd08405          53 KKKTVIKKRTLNPVFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG-GLELKHWKDMLS  123 (136)
T ss_pred             cccCcceeCCCCCcccceEEEe-CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC-CchHHHHHHHHh
Confidence            4789999999999999999998 8776676678999999999999999999999999875 224456776654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.42  E-value=6.3e-13  Score=90.63  Aligned_cols=73  Identities=26%  Similarity=0.399  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||.|.|. +.........|.|+|||++..+++++||++.++++++...+ ...|++|.+.
T Consensus        27 ~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~  100 (127)
T cd08373          27 KKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS  100 (127)
T ss_pred             eeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCC
Confidence            4799999999999999999998 75443445889999999999989999999999999988764 4689999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.42  E-value=3.1e-13  Score=90.11  Aligned_cols=69  Identities=19%  Similarity=0.495  Sum_probs=57.1

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcC-CcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~-~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      .++|+++++++||.|||+|.|. +...++ ....|.|.|||++.++.+++||++.++++++.  ....|+++.
T Consensus        38 ~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~--~~~~~~~~~  107 (111)
T cd04041          38 LYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI--EDRNWMGRR  107 (111)
T ss_pred             cEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh--cCCCCCccc
Confidence            4799999999999999999997 655433 34689999999999999999999999999886  334477664

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.42  E-value=3.1e-13  Score=92.06  Aligned_cols=70  Identities=21%  Similarity=0.393  Sum_probs=61.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||.|.|. +...   ...|.|+|||.+..+++++||++.+++.++... ....|++|++.
T Consensus        32 ~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~  102 (126)
T cd08678          32 KYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGR  102 (126)
T ss_pred             EEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCC
Confidence            3799999999999999999998 7532   367999999999998999999999999998866 45689999875

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.42  E-value=1.1e-13  Score=95.57  Aligned_cols=71  Identities=23%  Similarity=0.360  Sum_probs=60.2

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK   75 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~   75 (174)
                      ++||+++++++||.|||+|.|. ++...+....|.|.|||++.++++++||++.+++.. .......|++|..
T Consensus        53 ~~kT~v~k~t~nP~w~e~F~f~-v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~~~~~~~w~~l~~  123 (136)
T cd08404          53 KKKTHVKKCTLNPVFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-SGSGGHHWKEVCN  123 (136)
T ss_pred             eEcCccccCCCCCccCceEEEE-CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-CCchHHHHHHHHh
Confidence            5689999999999999999998 887777667899999999999999999999999987 3334455877643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.42  E-value=2.5e-13  Score=93.65  Aligned_cols=69  Identities=22%  Similarity=0.323  Sum_probs=57.5

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL   73 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L   73 (174)
                      |+||+++++++||+|||+|.|. ++.+++....|.|.|||++.++++++||.+.+..... ......|..+
T Consensus        53 k~kT~v~k~t~nP~~nE~f~F~-v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~-g~~~~hW~~m  121 (136)
T cd08406          53 KKKTSVKRDDTNPIFNEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS-GMGLSHWNQM  121 (136)
T ss_pred             ccCCccccCCCCCeeceeEEEE-CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC-ChhHHHHHHH
Confidence            5689999999999999999998 9988888899999999999999999999999866532 2222336554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.41  E-value=3.5e-13  Score=89.78  Aligned_cols=72  Identities=21%  Similarity=0.421  Sum_probs=60.6

Q ss_pred             CCccccccCCCCCccccEEEeCccc--cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC----cCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIR--RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD----EPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~--~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~----~~~W~~L~~  157 (174)
                      +++|++++++.||.|||.|.|. +.  ..++.+..|.|+|||.+.++++++||++.++++++....    ...|++|.+
T Consensus        33 ~~kT~~~~~t~nP~wne~f~f~-~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          33 KKYTSVKKGTNCPFYNEYFFFN-FHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             eeeeeEEeccCCCccccEEEEe-cCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            4789999999999999999998 53  334555789999999999888999999999999986552    358999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.41  E-value=4e-13  Score=90.73  Aligned_cols=71  Identities=25%  Similarity=0.513  Sum_probs=57.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC---cCceeecccCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHKNS  161 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~---~~~W~~L~~~~~~  161 (174)
                      +.+|++.++ .||.|||.|.|. +..  .. ..|.|+|||.+.+ +|++||++.|+|+++..+.   ..+||+|.++-..
T Consensus        32 k~kT~v~~~-~nP~WnE~F~F~-~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~  105 (127)
T cd08394          32 KSTTIAVRG-SQPCWEQDFMFE-INR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNM  105 (127)
T ss_pred             EeEeeECCC-CCCceeeEEEEE-EcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCccEecChHHhc
Confidence            357888877 599999999998 643  33 4599999998865 9999999999999988663   2589999985443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.41  E-value=2.1e-13  Score=93.73  Aligned_cols=70  Identities=30%  Similarity=0.572  Sum_probs=58.7

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      +++|+++++++||.|||+|.|. +..+++....|.|.|||++..+++++||.+.++++.. ......|+++.
T Consensus        51 ~~kT~v~~~t~nP~wne~f~f~-~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~-~~~~~~W~~~l  120 (133)
T cd08384          51 KHKTQVKKKTLNPEFNEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAK-GERLRHWLDCL  120 (133)
T ss_pred             CceeeeEeccCCCCcccEEEEE-CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCC-CchHHHHHHHH
Confidence            5789999999999999999998 8877776678999999999999999999999999752 22334487764

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.40  E-value=5e-13  Score=89.89  Aligned_cols=76  Identities=22%  Similarity=0.477  Sum_probs=60.3

Q ss_pred             CCcccccc-CCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC-C
Q psy6192          85 SNLSKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN-S  161 (174)
Q Consensus        85 ~~kT~~~~-~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~-~  161 (174)
                      +++|++++ .+.||+|||.|.|. +...  ....|.|+|||.+..+ +++||++.+++.++... ...+|++|...+. .
T Consensus        34 ~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~  109 (118)
T cd08681          34 TKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYA  109 (118)
T ss_pred             ccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEe
Confidence            47888765 47999999999998 7654  2368999999998775 89999999999997665 5579999987543 3


Q ss_pred             CCC
Q psy6192         162 GSN  164 (174)
Q Consensus       162 ~~~  164 (174)
                      |.+
T Consensus       110 G~i  112 (118)
T cd08681         110 GEV  112 (118)
T ss_pred             eEE
Confidence            444

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.40  E-value=6.3e-13  Score=89.89  Aligned_cols=71  Identities=27%  Similarity=0.472  Sum_probs=61.3

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN  160 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~  160 (174)
                      ++|++++++.||+|||.|.|. +..  .. ..|.|+|||.+..+++++||++.+++.++..+ ..+.|++|.+.+.
T Consensus        35 ~kT~~~~~t~nP~Wne~f~f~-v~~--~~-~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~  106 (121)
T cd04042          35 YKSKTIYKNLNPVWDEKFTLP-IED--VT-QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS  106 (121)
T ss_pred             EEeeeccCCCCCccceeEEEE-ecC--CC-CeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC
Confidence            699999999999999999998 653  23 68999999999999999999999999998866 5678999987443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.40  E-value=6.7e-13  Score=87.60  Aligned_cols=71  Identities=25%  Similarity=0.361  Sum_probs=58.0

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC---CCceEEecccc
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHT   77 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~---~~~w~~L~~~~   77 (174)
                      |+++||++++++.||.|||+|.|. +....  ...|.|.|||++.   +++||.+.++|..+...+   ...|++|.+.+
T Consensus        31 ~~~~kT~v~~~t~nP~Wne~f~f~-v~~~~--~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g  104 (105)
T cd04050          31 KTTQKSKVKERTNNPVWEEGFTFL-VRNPE--NQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG  104 (105)
T ss_pred             CEEEeCccccCCCCCcccceEEEE-eCCCC--CCEEEEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence            356899999999999999999998 65433  3579999999986   789999999999877554   34599997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.40  E-value=3.4e-13  Score=89.43  Aligned_cols=61  Identities=15%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT  147 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~  147 (174)
                      ++||+++++++||+|||.|.|. +..... ...|.|.|||++..+++++||++.++|.++..+
T Consensus        38 ~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          38 VFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             eEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhh
Confidence            3689999999999999999998 765443 368999999999999999999999999998765

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.40  E-value=5.3e-13  Score=91.28  Aligned_cols=70  Identities=20%  Similarity=0.415  Sum_probs=56.5

Q ss_pred             ceEeceeecCCC-CCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192           2 FKEFAKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~-nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L   73 (174)
                      .|+||+++++|+ ||+|||+|.|+ ++.++. ...|.|.|||++..+++++||.+.+........+...|.++
T Consensus        51 ~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m  121 (135)
T cd08692          51 YKKKTRLVKSSNGQVKWGETMIFP-VTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDT  121 (135)
T ss_pred             eeecCccEECCCCCceecceEEEe-CCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHH
Confidence            468899999995 69999999998 988754 57899999999999999999999998865433333446554

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.39  E-value=3e-13  Score=93.44  Aligned_cols=71  Identities=15%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-CCCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-~~~~w~~L   73 (174)
                      +++||+++++++||.|||+|.|. ++.+++....|.|.|||++..+++++||++.+........ +...|..+
T Consensus        51 ~~~kT~v~~~~~nP~fnE~F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~  122 (137)
T cd08409          51 KTKKTEVVDGAASPSFNESFSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM  122 (137)
T ss_pred             eeeecccEeCCCCCcccceEEEE-CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence            36789999999999999999998 9988888889999999999999999999999876433322 22336554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.39  E-value=2.1e-13  Score=94.02  Aligned_cols=71  Identities=25%  Similarity=0.410  Sum_probs=56.5

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      +++|+++++|+||.|||+|.|. ++.+++....|.|.|||++..+++++||.+.+............|..|.
T Consensus        52 ~~kT~v~~~t~nP~wnE~F~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~  122 (135)
T cd08410          52 TKKTSCMRGTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRML  122 (135)
T ss_pred             eEcCccccCCCCCccceeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHH
Confidence            5789999999999999999998 8887777678999999999999999999987654333222233466653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.38  E-value=1.3e-12  Score=88.38  Aligned_cols=70  Identities=26%  Similarity=0.444  Sum_probs=58.9

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      .++|++++++.||.|||+|.|. +..  . ...|.|.|||++..+++++||.+.++++++..+. ...|++|.+.
T Consensus        34 ~~kT~~~~~t~nP~Wne~f~f~-v~~--~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~  104 (121)
T cd04042          34 VYKSKTIYKNLNPVWDEKFTLP-IED--V-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDP  104 (121)
T ss_pred             EEEeeeccCCCCCccceeEEEE-ecC--C-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCC
Confidence            5789999999999999999997 642  2 3679999999999999999999999999887554 3459998644

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.38  E-value=3.4e-13  Score=92.78  Aligned_cols=71  Identities=20%  Similarity=0.385  Sum_probs=59.7

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|++++++.||.|||.|.|. ++...+....|.|+|||++..+++++||++.|++... ..+.++|+.+..
T Consensus        52 ~~kT~v~~~t~nP~wne~f~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~-~~~~~~w~~~~~  122 (134)
T cd08403          52 KKKTSVKKNTLNPTYNEALVFD-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD-GQGREHWNEMLA  122 (134)
T ss_pred             eecCCcccCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC-CchHHHHHHHHH
Confidence            3689999999999999999998 8777676678999999999999999999999998732 335567887655

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.38  E-value=2.1e-12  Score=88.02  Aligned_cols=70  Identities=20%  Similarity=0.387  Sum_probs=57.9

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~~  159 (174)
                      .+|+++ ++.||.|||.|.|. +....+  ..+.|.|||.+..+++++||++.+++.++..++ .+.||+|.+..
T Consensus        36 ~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~  106 (126)
T cd08400          36 ARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSAS  106 (126)
T ss_pred             EEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCC
Confidence            478875 58999999999998 654433  468899999999999999999999999987764 46899998853

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.36  E-value=1.6e-12  Score=89.23  Aligned_cols=70  Identities=29%  Similarity=0.489  Sum_probs=59.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-------cCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-------EPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-------~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|. +...   ...|.|+|||.+..+++++||++.+++.++....       ...||+|.+
T Consensus        40 ~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~  115 (133)
T cd04033          40 SVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP  115 (133)
T ss_pred             ceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence            3689999999999999999998 7543   2579999999999999999999999999987652       248999987


Q ss_pred             C
Q psy6192         158 H  158 (174)
Q Consensus       158 ~  158 (174)
                      .
T Consensus       116 ~  116 (133)
T cd04033         116 R  116 (133)
T ss_pred             c
Confidence            4

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1030|consensus

Probab=99.36  E-value=5.4e-13  Score=92.97  Aligned_cols=59  Identities=22%  Similarity=0.561  Sum_probs=52.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT  147 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~  147 (174)
                      +.||+++++++||+|||.|+|. +....   ..|.++|||+|.++++||||.++|++..+...
T Consensus        39 ~lkT~~v~~n~NPeWNe~ltf~-v~d~~---~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   39 KLKTRVVYKNLNPEWNEELTFT-VKDPN---TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA   97 (168)
T ss_pred             eeeeeeecCCCCCcccceEEEE-ecCCC---ceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence            4689999999999999999999 76554   56999999999999999999999999887654

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.36  E-value=2.4e-12  Score=87.69  Aligned_cols=72  Identities=29%  Similarity=0.549  Sum_probs=59.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC---CC-CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC---TD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~---~~-~~~w~~L~~~   76 (174)
                      ++++|+++++++||.|||+|.|. +..  .....|.|.|||++..+.+++||.+.++++++..   .. ...|+.|.+.
T Consensus        35 ~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~  110 (128)
T cd04024          35 QRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST  110 (128)
T ss_pred             EEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence            46799999999999999999997 654  2346899999999999899999999999998763   12 3459999754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.36  E-value=1.9e-12  Score=90.71  Aligned_cols=72  Identities=17%  Similarity=0.307  Sum_probs=59.2

Q ss_pred             CCccccccC-CCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-----CcCceeecccC
Q psy6192          85 SNLSKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~-t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-----~~~~W~~L~~~  158 (174)
                      +++|+++++ +.||+|||.|.|. +...  ....+.|.|||.+..+++++||++.|+++++...     ...+||+|.+.
T Consensus        33 ~~kTk~~~~~t~nP~WNE~F~f~-v~~~--~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~  109 (150)
T cd04019          33 VLRTRPSQTRNGNPSWNEELMFV-AAEP--FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP  109 (150)
T ss_pred             EeeeEeccCCCCCCcccCcEEEE-ecCc--cCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCC
Confidence            368888866 6999999999998 6532  2368999999999888999999999999998643     34799999985


Q ss_pred             C
Q psy6192         159 K  159 (174)
Q Consensus       159 ~  159 (174)
                      +
T Consensus       110 ~  110 (150)
T cd04019         110 G  110 (150)
T ss_pred             C
Confidence            4

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.36  E-value=4.1e-13  Score=92.61  Aligned_cols=69  Identities=26%  Similarity=0.406  Sum_probs=57.0

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL   73 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L   73 (174)
                      ++||++++++.||.|||+|.|. ++.+.+....|.|.|||++.++++++||.+.+++... ......|+++
T Consensus        53 ~~kT~v~~~t~~P~wne~F~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~-~~~~~~w~~~  121 (136)
T cd08405          53 KKKTVIKKRTLNPVFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG-GLELKHWKDM  121 (136)
T ss_pred             cccCcceeCCCCCcccceEEEe-CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC-CchHHHHHHH
Confidence            4689999999999999999998 8777666678999999999999999999999999865 2222335554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.36  E-value=1.7e-12  Score=87.71  Aligned_cols=78  Identities=22%  Similarity=0.399  Sum_probs=66.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccCCCCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSN  164 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~~~~~~~  164 (174)
                      +++|++++++.||.|||.|.|. +...   ...|.|+|||.+..+++++||++.+++.++.....+.||.|.+.++-..+
T Consensus        35 ~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          35 KGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLK  110 (120)
T ss_pred             eeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceee
Confidence            3789999999999999999997 6543   26899999999999999999999999999988888899999987765555


Q ss_pred             Cc
Q psy6192         165 PT  166 (174)
Q Consensus       165 ~~  166 (174)
                      +.
T Consensus       111 ~~  112 (120)
T cd04045         111 RL  112 (120)
T ss_pred             Ee
Confidence            54

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.35  E-value=2.5e-12  Score=86.85  Aligned_cols=68  Identities=28%  Similarity=0.553  Sum_probs=54.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---CceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---PEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~~w~~L~~   75 (174)
                      +|.+|++.++ .||.|||+|.|. +..  .. ..|.|.|||++.+ .|++||.+.++|+++...+.   ..||+|.+
T Consensus        31 ~k~kT~v~~~-~nP~WnE~F~F~-~~~--~~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          31 VKSTTIAVRG-SQPCWEQDFMFE-INR--LD-LGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEeEeeECCC-CCCceeeEEEEE-EcC--CC-CEEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence            4668888887 499999999997 543  33 4499999999965 89999999999999775542   46999974

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.35  E-value=2.6e-12  Score=86.38  Aligned_cols=71  Identities=21%  Similarity=0.449  Sum_probs=57.2

Q ss_pred             ceEeceeec-CCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      ++++|+++. +++||.|||+|.|. +....  ...|.|.|||++..+ +++||++.++++++.... ...|++|...
T Consensus        33 ~~~kT~~~~~~~~nP~Wne~f~f~-v~~~~--~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  105 (118)
T cd08681          33 VTKKTKTDFRGGQHPEWDEELRFE-ITEDK--KPILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLK  105 (118)
T ss_pred             CccccccccCCCCCCccCceEEEE-ecCCC--CCEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCcEEeccC
Confidence            467888875 57899999999998 76542  467999999999876 899999999999875543 4569999754

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.35  E-value=3e-12  Score=86.87  Aligned_cols=71  Identities=28%  Similarity=0.396  Sum_probs=59.7

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC--CceeEEEEEeCCcCCCCC--cCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTD--EPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~--~~~iG~~~l~l~~~~~~~--~~~W~~L~~~~~  160 (174)
                      .++|++++++.||.|||.|.|. +..    ...|.|+|||++..+.  +++||++.+++.++....  ...|++|.+.+.
T Consensus        34 ~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~  108 (123)
T cd08382          34 THSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK  108 (123)
T ss_pred             ceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCC
Confidence            4799999999999999999998 754    3789999999988765  579999999999987553  468999977554

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.35  E-value=1.7e-12  Score=87.65  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=58.3

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCC----CCCCceEEEEEEecccccCCCCC-ceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTR----YGVNDFLGEVIIELSSSLCTDEP-EWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~----~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~~   76 (174)
                      ++||+++++++||.|||+|.|. +..+.  ...|.|.|||++.    .+.+++||++.++++++...... .|+.|.+.
T Consensus        40 ~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~  115 (120)
T cd04048          40 IGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGG  115 (120)
T ss_pred             eccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence            4799999999999999999997 55444  3579999999997    88999999999999998765433 37777443

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.35  E-value=5.1e-12  Score=86.10  Aligned_cols=70  Identities=21%  Similarity=0.388  Sum_probs=56.4

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~   76 (174)
                      +.||+++ ++.||.|||+|.|. +...++  ..|.|.|||++..+++++||.+.++|+.+..... ..|+.|.+.
T Consensus        35 ~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~  105 (126)
T cd08400          35 VARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSA  105 (126)
T ss_pred             EEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccC
Confidence            3578874 68999999999997 654443  3688999999999999999999999998775543 459999754

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.35  E-value=2.2e-12  Score=87.00  Aligned_cols=70  Identities=27%  Similarity=0.430  Sum_probs=59.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~  158 (174)
                      .++|++++++.||+|||.|.|. +...  ....|.|+|||.+.. ++++||++.+++.++...+ ...||+|.+.
T Consensus        40 ~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  110 (121)
T cd08391          40 TFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV  110 (121)
T ss_pred             eEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC
Confidence            4799999999999999999998 6533  346899999999888 8999999999999987664 5699999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.35  E-value=3.7e-12  Score=87.25  Aligned_cols=73  Identities=30%  Similarity=0.609  Sum_probs=62.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      .++||++++++.||.|||+|.|. +...+. ...|.|.|||++..+.+++||.+.++++++.......||+|...
T Consensus        50 ~~~rT~v~~~~~~P~wne~f~~~-~~~~~~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~  122 (131)
T cd04026          50 TKQKTKTIKKTLNPVWNETFTFD-LKPADK-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGWYKLLNQ  122 (131)
T ss_pred             ceecceeecCCCCCCccceEEEe-CCchhc-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcCccCceEECcCc
Confidence            35789999999999999999998 765543 46899999999998899999999999998876555669998654

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.35  E-value=3.5e-12  Score=86.26  Aligned_cols=68  Identities=18%  Similarity=0.319  Sum_probs=58.9

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--CcCceeeccc
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYLTK  157 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~~~W~~L~~  157 (174)
                      ++|++++++.||+|||.|.|. +...   ...|.|.|||.+..+++++||++.++++.+...  ..++|++|.+
T Consensus        35 ~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~  104 (121)
T cd04054          35 IRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTE  104 (121)
T ss_pred             eeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECee
Confidence            699999999999999999998 6533   267999999999999999999999999887654  3579999987

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.34  E-value=1.9e-12  Score=87.45  Aligned_cols=71  Identities=17%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCC----CCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTR----YGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~----~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      .++|++++++.||+|||.|.|. +..+.  ...|.|+|||++.    .+++++||++.+++.++... ....|+.|.+.
T Consensus        40 ~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~~  115 (120)
T cd04048          40 IGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKGG  115 (120)
T ss_pred             eccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence            3799999999999999999997 55433  2479999999997    78999999999999999876 45679998553

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.34  E-value=5.8e-13  Score=91.89  Aligned_cols=69  Identities=25%  Similarity=0.445  Sum_probs=56.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL   73 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L   73 (174)
                      +++|+++++++||.|||+|.|. ++.+.+....|.|.|||++.++++++||++.+++... ......|+++
T Consensus        53 ~~kT~v~~~t~nP~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~-~~~~~~W~~~  121 (136)
T cd08402          53 KKKTTIKKRTLNPYYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT-GAELRHWSDM  121 (136)
T ss_pred             eeeccceeCCCCCcccceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC-ChHHHHHHHH
Confidence            5689999999999999999998 8877766678999999999999999999999999753 2222336655

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.34  E-value=3.1e-12  Score=87.00  Aligned_cols=71  Identities=23%  Similarity=0.445  Sum_probs=59.1

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC----CcCceeecccCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~----~~~~W~~L~~~~  159 (174)
                      ++|++++++.||.|||.|.|. +...  ....|.|+|||.+..+++++||++.+++..+...    ....|++|.+.|
T Consensus        38 ~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g  112 (126)
T cd04043          38 AKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQG  112 (126)
T ss_pred             ecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCC
Confidence            699999999999999999998 7654  2468999999999888999999999999875432    345899998744

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.34  E-value=4.3e-12  Score=86.07  Aligned_cols=70  Identities=27%  Similarity=0.353  Sum_probs=57.8

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC--CceEEEEEEecccccCCC--CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTD--EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~--~~~lG~~~~~l~~~~~~~--~~~w~~L~~~   76 (174)
                      +.+||+++++++||.|||+|.|. +..    ...|.|.|||++..++  +++||++.+++.++....  ...|++|.+.
T Consensus        33 ~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  106 (123)
T cd08382          33 QTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKL  106 (123)
T ss_pred             cceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecC
Confidence            46799999999999999999998 654    4689999999998875  589999999999976443  3569988543

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.34  E-value=3.2e-12  Score=87.71  Aligned_cols=69  Identities=25%  Similarity=0.445  Sum_probs=59.3

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC---CcCceeecccCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~---~~~~W~~L~~~~  159 (174)
                      .+|++++++.||.|||+|.|. +.    ....|.|.|||.+..+.+++||++.++++++..+   ..+.|++|.+.|
T Consensus        49 ~kT~~~~~t~~P~Wne~f~~~-v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G  120 (132)
T cd04014          49 GKTSTKPKTNSPVWNEEFTTE-VH----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQG  120 (132)
T ss_pred             eEEeEcCCCCCCCcceeEEEE-cC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCc
Confidence            588999999999999999998 75    2368999999999888899999999999998762   457999998654

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.34  E-value=7.6e-13  Score=91.07  Aligned_cols=69  Identities=22%  Similarity=0.411  Sum_probs=56.7

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL   73 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L   73 (174)
                      +++|+++++++||.|||+|.|. +..+.+....|.|.|||++..+++++||++.+++... ......|+++
T Consensus        52 ~~kT~v~~~t~nP~wne~f~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~-~~~~~~w~~~  120 (134)
T cd08403          52 KKKTSVKKNTLNPTYNEALVFD-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD-GQGREHWNEM  120 (134)
T ss_pred             eecCCcccCCCCCcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC-CchHHHHHHH
Confidence            5689999999999999999998 8777776678999999999999999999999987632 2223347665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.34  E-value=4.4e-12  Score=86.35  Aligned_cols=61  Identities=23%  Similarity=0.450  Sum_probs=50.8

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL   63 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~   63 (174)
                      |+++||+++++++||+|||+|.|......  ....|.|+|||++.++.+++||.+.++|....
T Consensus        58 ~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          58 GQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence            35689999999999999999999612222  34689999999999999999999999998544

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.34  E-value=3.2e-12  Score=87.10  Aligned_cols=71  Identities=30%  Similarity=0.573  Sum_probs=60.4

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC---C-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC---T-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~---~-~~~~W~~L~~~  158 (174)
                      +++|++++++.||.|||.|.|. +..  .....|.|+|||.+..+++++||++.+++.++..   . ....||.|.+.
T Consensus        36 ~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~  110 (128)
T cd04024          36 RFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST  110 (128)
T ss_pred             EEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence            3789999999999999999998 654  3347899999999998899999999999999863   2 34689999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.33  E-value=7.1e-13  Score=90.97  Aligned_cols=72  Identities=22%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      +++|++++++.||.|||+|.|. +....+....|.|+|||.+..+++++||.+.+++++ ...+.++|+.|...
T Consensus        52 ~~~T~~~~~~~~P~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~~  123 (134)
T cd00276          52 KKKTSVKKGTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWNEMLAS  123 (134)
T ss_pred             eecCcceecCCCCeeeeeEEEE-CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHHHHHhC
Confidence            4689999999999999999999 887766668899999999988899999999999998 44467899998875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.33  E-value=6e-12  Score=85.41  Aligned_cols=78  Identities=19%  Similarity=0.359  Sum_probs=62.3

Q ss_pred             ceEeceeecC-CCCCccCceEEcCCcCcCcC-CcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccce
Q psy6192           2 FKEFAKTLAN-TNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHTL   78 (174)
Q Consensus         2 ~k~rT~~~~~-t~nP~w~E~f~f~~v~~~~~-~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~~   78 (174)
                      ++++|++.++ +.||.|||+|.|. +..... ....|.|.|||.+.++.+++||.+.+++.++...+ ...|+.|.+...
T Consensus        33 ~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~  111 (124)
T cd04049          33 QERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY  111 (124)
T ss_pred             EeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence            4568888874 8999999999998 765432 24679999999999999999999999999887554 445999988765


Q ss_pred             Ee
Q psy6192          79 EL   80 (174)
Q Consensus        79 ~l   80 (174)
                      ++
T Consensus       112 ~~  113 (124)
T cd04049         112 NV  113 (124)
T ss_pred             EE
Confidence            44

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.33  E-value=1.5e-12  Score=86.76  Aligned_cols=74  Identities=23%  Similarity=0.388  Sum_probs=60.4

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC--CcCceeecccCCCCCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYLTKHKNSGS  163 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~--~~~~W~~L~~~~~~~~  163 (174)
                      ++|++++++.||+|||.|.|. +...  ....|.|.|||.+.+ ++++||.+.++|.++...  ....||+|++ +..|.
T Consensus        27 ~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~-~~~G~  101 (111)
T cd04052          27 YTTRVKKKTNNPSWNASTEFL-VTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQWFPLSG-NGQGR  101 (111)
T ss_pred             EEEeeeccCCCCccCCceEEE-ecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccceeEECCC-CCCCE
Confidence            688999999999999999998 6532  346799999999988 899999999999988544  3469999985 34454


Q ss_pred             C
Q psy6192         164 N  164 (174)
Q Consensus       164 ~  164 (174)
                      +
T Consensus       102 i  102 (111)
T cd04052         102 I  102 (111)
T ss_pred             E
Confidence            4

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.33  E-value=2.8e-12  Score=89.97  Aligned_cols=64  Identities=27%  Similarity=0.588  Sum_probs=55.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L  155 (174)
                      .++|++++++.||+|||.|.|. +..  +....|.|+|||.+    +++||++.++++++...+..+||+|
T Consensus        90 ~~kT~v~~~tlnP~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676          90 IKVTEVKPQTLNPVWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             cEecceecCCCCCccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            4789999999999999999998 643  34578999999987    8899999999999986678899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.33  E-value=6.2e-12  Score=85.52  Aligned_cols=72  Identities=22%  Similarity=0.428  Sum_probs=58.5

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC----CCCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DEPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~----~~~~w~~L~~~~   77 (174)
                      ..||+++++++||.|||+|.|. +....  ...|.|.|||++..+.+++||++.++|+.....    ....|++|.+.+
T Consensus        37 ~~kT~~~~~t~~P~Wne~f~f~-i~~~~--~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~g  112 (126)
T cd04043          37 IAKTRTIYDTLNPRWDEEFELE-VPAGE--PLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQG  112 (126)
T ss_pred             eecccEecCCCCCcccceEEEE-cCCCC--CCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCCC
Confidence            4699999999999999999998 76542  467999999999988999999999999875432    233599997643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.32  E-value=6e-12  Score=84.86  Aligned_cols=70  Identities=26%  Similarity=0.406  Sum_probs=58.5

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~   75 (174)
                      +.++|++++++.||.|||+|.|. +...  ....|.|.|||++.. .+++||.+.++++++.... ...|++|.+
T Consensus        39 ~~~kT~~~~~t~~P~W~e~f~~~-v~~~--~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  109 (121)
T cd08391          39 QTFKSKVIKENLNPKWNEVYEAV-VDEV--PGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED  109 (121)
T ss_pred             EeEEccccCCCCCCcccceEEEE-eCCC--CCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence            45799999999999999999987 6433  346899999999988 8899999999999877554 345999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.32  E-value=3.5e-12  Score=87.70  Aligned_cols=62  Identities=24%  Similarity=0.290  Sum_probs=53.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCc--CCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSD--LKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~--~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      .++||+++++|+||+|||+|.|. +....  .....|.|.|||++.++++++||++.++|+++..
T Consensus        55 ~~~kT~v~~~t~nP~wnE~f~f~-i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          55 PTPKTQVKKKTLFPLFDESFEFN-VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             cccccccCcCCCCCccCCEEEEE-echhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            36799999999999999999998 66532  2346899999999999999999999999988763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.32  E-value=6.5e-12  Score=88.03  Aligned_cols=73  Identities=16%  Similarity=0.280  Sum_probs=58.6

Q ss_pred             ceEeceeecC-CCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-----CCCceEEecc
Q psy6192           2 FKEFAKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----DEPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~-t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-----~~~~w~~L~~   75 (174)
                      ++++|+++.+ ++||.|||+|.|. +...  ....|.|.|||++..+++++||.+.++|+.+...     ....|++|..
T Consensus        32 ~~~kTk~~~~~t~nP~WNE~F~f~-v~~~--~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~  108 (150)
T cd04019          32 QVLRTRPSQTRNGNPSWNEELMFV-AAEP--FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLER  108 (150)
T ss_pred             EEeeeEeccCCCCCCcccCcEEEE-ecCc--cCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcC
Confidence            5678998876 6999999999997 6432  2357999999999988999999999999987643     1345999976


Q ss_pred             cc
Q psy6192          76 HT   77 (174)
Q Consensus        76 ~~   77 (174)
                      ..
T Consensus       109 ~~  110 (150)
T cd04019         109 PG  110 (150)
T ss_pred             CC
Confidence            54

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.31  E-value=5.6e-12  Score=85.56  Aligned_cols=72  Identities=22%  Similarity=0.379  Sum_probs=60.4

Q ss_pred             CccccccC-CCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          86 NLSKTLAN-TNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        86 ~kT~~~~~-t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      ++|++.++ +.||.|||.|.|. +..... ....|.|.|||.+.++++++||++.+++.++... ..+.|+.|.+.
T Consensus        35 ~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          35 RKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             eeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            57777764 8999999999998 765532 2367999999999988999999999999998766 45799999884

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.29  E-value=8e-12  Score=85.74  Aligned_cols=70  Identities=27%  Similarity=0.472  Sum_probs=58.1

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-------CCceEEecc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-------EPEWFYLTK   75 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-------~~~w~~L~~   75 (174)
                      +++|+++++|.||.|||+|.|. +...   ...|.|.|||++.++++++||.+.++++++....       ...|++|.+
T Consensus        40 ~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~  115 (133)
T cd04033          40 SVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP  115 (133)
T ss_pred             ceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeee
Confidence            4689999999999999999997 6543   2569999999999999999999999999877542       235999875


Q ss_pred             c
Q psy6192          76 H   76 (174)
Q Consensus        76 ~   76 (174)
                      .
T Consensus       116 ~  116 (133)
T cd04033         116 R  116 (133)
T ss_pred             c
Confidence            3

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.29  E-value=1.4e-11  Score=84.50  Aligned_cols=69  Identities=25%  Similarity=0.430  Sum_probs=58.2

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC---CCCceEEecccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTKHT   77 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~---~~~~w~~L~~~~   77 (174)
                      .+|++++++.||.|||+|.|. +.    ....|.|.|||++..+.+++||.+.++|+++...   ....|++|.+.+
T Consensus        49 ~kT~~~~~t~~P~Wne~f~~~-v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G  120 (132)
T cd04014          49 GKTSTKPKTNSPVWNEEFTTE-VH----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQG  120 (132)
T ss_pred             eEEeEcCCCCCCCcceeEEEE-cC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCCc
Confidence            589999999999999999998 75    2367999999999988999999999999987752   345599998653

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.29  E-value=1.1e-11  Score=84.39  Aligned_cols=60  Identities=20%  Similarity=0.381  Sum_probs=50.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC  146 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~  146 (174)
                      ++||++++++.||+|||+|.|. ..... ....|.|+|||++..+++++||++.+++.....
T Consensus        60 ~~kT~vi~~t~nPvWNE~F~f~-~~~~~-~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032          60 EKRTEVIWNNNNPRWNATFDFG-SVELS-PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             cccCceecCCCCCcCCCEEEEe-cccCC-CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCce
Confidence            5899999999999999999996 42222 347899999999999999999999999986553

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>KOG1028|consensus

Probab=99.28  E-value=5.9e-12  Score=101.63  Aligned_cols=73  Identities=25%  Similarity=0.471  Sum_probs=67.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~  158 (174)
                      +.+|++.++|+||+|||+|.|. ++..++....|.++|||+|.++++++||++.+++..+.... ...|.+|++.
T Consensus       203 k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~  276 (421)
T KOG1028|consen  203 KFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS  276 (421)
T ss_pred             cceeeeeecCcCCccccceEee-cCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccc
Confidence            6799999999999999999999 99999999999999999999999999999999998887664 5679999983

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.28  E-value=1.1e-11  Score=83.90  Aligned_cols=66  Identities=32%  Similarity=0.497  Sum_probs=55.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP   68 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~   68 (174)
                      .++||++++++.||.|||+|.|..+..+++....|.|.|||++.. .+++||.+.++++++..+...
T Consensus        52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~  117 (123)
T cd04035          52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK  117 (123)
T ss_pred             CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence            357999999999999999999953555555567899999999988 889999999999988765443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.28  E-value=9.4e-12  Score=85.54  Aligned_cols=63  Identities=24%  Similarity=0.336  Sum_probs=54.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCC--CCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSD--LKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD  148 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~--~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~  148 (174)
                      +++|+++++|+||+|||.|.|. +...+  .....|.|+|||++..+++++||++.++++++..-+
T Consensus        56 ~~kT~v~~~t~nP~wnE~f~f~-i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~  120 (133)
T cd04009          56 TPKTQVKKKTLFPLFDESFEFN-VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVE  120 (133)
T ss_pred             ccccccCcCCCCCccCCEEEEE-echhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence            5799999999999999999998 76532  345789999999999988999999999999987443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.28  E-value=1.4e-11  Score=86.41  Aligned_cols=63  Identities=27%  Similarity=0.595  Sum_probs=53.8

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEe
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL   73 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L   73 (174)
                      ++|+++++++||.|||+|.|. +..  +....|.|.|||++    +++||.+.++++++.......||+|
T Consensus        91 ~kT~v~~~tlnP~WnE~F~f~-v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676          91 KVTEVKPQTLNPVWNETFRFE-VED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             EecceecCCCCCccccEEEEE-ecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            689999999999999999997 643  23468999999998    8999999999999885556679986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.27  E-value=1.2e-11  Score=86.11  Aligned_cols=63  Identities=17%  Similarity=0.411  Sum_probs=54.0

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE   67 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~   67 (174)
                      ++++||++++++.||.|||+|.|. +...   ...|.|.|||++.++.+++||.+.+++..+.....
T Consensus        32 ~~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~   94 (145)
T cd04038          32 NQKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAK   94 (145)
T ss_pred             CEEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhh
Confidence            356899999999999999999997 6543   46799999999999999999999999988765433

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.27  E-value=2.1e-12  Score=88.62  Aligned_cols=72  Identities=24%  Similarity=0.347  Sum_probs=60.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      +++|++++++.||.|||+|.|. ++...+....|.|.|||.+..+.+++||.+.++++. .......|++|...
T Consensus        52 ~~~T~~~~~~~~P~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~~  123 (134)
T cd00276          52 KKKTSVKKGTLNPVFNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-GGEELEHWNEMLAS  123 (134)
T ss_pred             eecCcceecCCCCeeeeeEEEE-CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC-CCcHHHHHHHHHhC
Confidence            5689999999999999999998 887776667899999999998899999999999998 33334458887544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.27  E-value=1.5e-11  Score=83.12  Aligned_cols=71  Identities=25%  Similarity=0.448  Sum_probs=60.0

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~   77 (174)
                      +++|++++++.||.|||+|.|. +...   ...|.|.|||++..+++++||++.+++.++.......||.|.+..
T Consensus        35 ~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~  105 (120)
T cd04045          35 KGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDE  105 (120)
T ss_pred             eeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceEEecCCC
Confidence            4789999999999999999886 5443   257999999999999999999999999998877666688886553

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.26  E-value=1.8e-11  Score=82.77  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=57.3

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEecc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTK   75 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~~   75 (174)
                      .||+++++++||.|||.|.|. +...   ...|.|.|||++.++++++||.+.+.+..+....  ...|++|.+
T Consensus        35 ~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~  104 (121)
T cd04054          35 IRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTE  104 (121)
T ss_pred             eeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECee
Confidence            599999999999999999997 6533   2579999999999999999999999988776432  456999975

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.26  E-value=1.9e-11  Score=82.19  Aligned_cols=69  Identities=33%  Similarity=0.611  Sum_probs=58.7

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~~  159 (174)
                      ++|++++++.||.|||+|.|. +..  + ...+.|+|||.+..+++++||++.+++.++.. +..+||.|.+..
T Consensus        35 ~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~-~~~~~~~l~~~~  103 (119)
T cd08377          35 LQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKN-GERKWYALKDKK  103 (119)
T ss_pred             eecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCC-CCceEEECcccC
Confidence            689999999999999999998 643  2 37899999999988899999999999988754 456899998743

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.26  E-value=2.8e-11  Score=80.93  Aligned_cols=71  Identities=28%  Similarity=0.418  Sum_probs=59.2

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKHT   77 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~~   77 (174)
                      ++|+++.++.||.|||+|.|. +...  ....|.|.|||++..+.+++||++.+++.++..... ..|++|.+.+
T Consensus        34 ~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g  105 (115)
T cd04040          34 FKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQG  105 (115)
T ss_pred             eeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCC
Confidence            689999999999999999997 6543  346899999999999999999999999998765433 4499987654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.26  E-value=2.7e-11  Score=85.61  Aligned_cols=68  Identities=22%  Similarity=0.426  Sum_probs=57.5

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      .+|++++++.||+|||.|.|. +...  . ..|.|+|||.+.++ +++||++.++++++..+ ..++|++|.+.
T Consensus        72 ~rT~v~~~~~nP~WnE~F~~~-~~~~--~-~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~  140 (158)
T cd04015          72 ARTRVIENSENPVWNESFHIY-CAHY--A-SHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS  140 (158)
T ss_pred             eEEEEeCCCCCCccceEEEEE-ccCC--C-CEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence            589999999999999999998 6533  2 57999999998774 68999999999998766 45799999774

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.26  E-value=1.1e-11  Score=85.55  Aligned_cols=59  Identities=31%  Similarity=0.544  Sum_probs=52.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC  146 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~  146 (174)
                      +++|++++++.||.|||.|.|. +..  .....|.|+|||.+.++++++||++.+++.++..
T Consensus        48 ~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          48 EHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK  106 (136)
T ss_pred             eeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence            4799999999999999999998 643  3346899999999999899999999999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.26  E-value=1.5e-11  Score=82.24  Aligned_cols=72  Identities=28%  Similarity=0.415  Sum_probs=61.6

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN  160 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~  160 (174)
                      ++|+++.++.+|.|||+|.|. +...  ....+.|.|||.+..+++++||++.+++.++..+ ....|++|.+.+.
T Consensus        34 ~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~  106 (115)
T cd04040          34 FKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG  106 (115)
T ss_pred             eeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence            689999999999999999998 6543  3478999999999888999999999999998766 4568999988544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.24  E-value=3.9e-11  Score=82.69  Aligned_cols=76  Identities=17%  Similarity=0.423  Sum_probs=54.8

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCc----CcC--CcceEEEEEEeCCCCCCCceEEEEEEe-cccccC----CCCCc
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRR----SDL--KLRSIEITVWDYTRYGVNDFLGEVIIE-LSSSLC----TDEPE   69 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~----~~~--~~~~L~i~v~d~~~~~~~~~lG~~~~~-l~~~~~----~~~~~   69 (174)
                      ++++||+++++|+||.|||+|.|.....    +.+  ....|.|.|||++..+++++||++.+. +..+..    .....
T Consensus        32 ~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~  111 (135)
T cd04017          32 NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ  111 (135)
T ss_pred             CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCce
Confidence            3578999999999999999999862221    111  124689999999999999999999873 332222    23446


Q ss_pred             eEEeccc
Q psy6192          70 WFYLTKH   76 (174)
Q Consensus        70 w~~L~~~   76 (174)
                      |++|...
T Consensus       112 W~~L~~~  118 (135)
T cd04017         112 WFPIYKG  118 (135)
T ss_pred             EEEeecC
Confidence            9999643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.24  E-value=2.2e-11  Score=81.22  Aligned_cols=54  Identities=20%  Similarity=0.469  Sum_probs=45.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeC-------CCCCCCceEEEEEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-------TRYGVNDFLGEVIIELSS   61 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~-------~~~~~~~~lG~~~~~l~~   61 (174)
                      +.||+++++|+||+|||+|.|. +.  .  ...|++.|||+       +..+.|+++|.+.+.|..
T Consensus        32 ~~KTk~i~~TlnPvWnE~F~i~-l~--~--s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          32 KAKTRVCRDTTEPNWNEEFEIE-LE--G--SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             eeeeeeecCCCCCccceEEEEE-eC--C--CCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence            5799999999999999999998 65  2  45899999998       466889999888887753

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.24  E-value=2.6e-11  Score=82.67  Aligned_cols=71  Identities=30%  Similarity=0.613  Sum_probs=57.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC-----------CCCceeEEEEEeCCcCCCCCcCcee
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEWF  153 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~-----------~~~~~iG~~~l~l~~~~~~~~~~W~  153 (174)
                      +++|++++++.||+|||.|.|. +...   ...|.|.|||++..           +.+++||++.+++.++. .....||
T Consensus        34 ~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~-~~~~~w~  108 (127)
T cd04027          34 KKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS-GEMDVWY  108 (127)
T ss_pred             eeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc-CCCCeEE
Confidence            3689999999999999999997 5432   25799999998752           46899999999998864 4556999


Q ss_pred             ecccCCC
Q psy6192         154 YLTKHKN  160 (174)
Q Consensus       154 ~L~~~~~  160 (174)
                      .|.+...
T Consensus       109 ~L~~~~~  115 (127)
T cd04027         109 NLEKRTD  115 (127)
T ss_pred             ECccCCC
Confidence            9998654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.24  E-value=1.7e-11  Score=84.57  Aligned_cols=60  Identities=30%  Similarity=0.510  Sum_probs=52.2

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      +++||++++++.||.|||+|.|. +..  .....|.|.|||++.++.+++||.+.+++.++..
T Consensus        47 ~~~kT~vi~~t~nP~Wne~f~f~-v~~--~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~  106 (136)
T cd08375          47 QEHKTKVVSDTLNPKWNSSMQFF-VKD--LEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK  106 (136)
T ss_pred             EeeeccccCCCCCCccCceEEEE-ecC--ccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence            46799999999999999999997 643  2346899999999999999999999999988765

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.24  E-value=3.9e-11  Score=82.77  Aligned_cols=70  Identities=21%  Similarity=0.276  Sum_probs=55.4

Q ss_pred             ceEeceeecCCCCCcc-CceEEcCCcCcCcCCcceEEEEEEeCCCCCC---CceEEEEEEecccccCCCC----CceEEe
Q psy6192           2 FKEFAKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGV---NDFLGEVIIELSSSLCTDE----PEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w-~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~---~~~lG~~~~~l~~~~~~~~----~~w~~L   73 (174)
                      +++||+++++++||+| ||+|.|. +..+    ..|.|+|||++..++   +++||++.++++++...+.    ..|+.|
T Consensus        45 ~~~kT~v~~~tlnP~W~nE~f~f~-v~~~----~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l  119 (137)
T cd08691          45 QECRTSIVENTINPVWHREQFVFV-GLPT----DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTL  119 (137)
T ss_pred             ceeeeeeEcCCCCCceEceEEEEE-cCCC----CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEEC
Confidence            4689999999999999 9999997 6432    479999999875444   7999999999998865532    237777


Q ss_pred             ccc
Q psy6192          74 TKH   76 (174)
Q Consensus        74 ~~~   76 (174)
                      ...
T Consensus       120 ~k~  122 (137)
T cd08691         120 GRR  122 (137)
T ss_pred             CcC
Confidence            644

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.23  E-value=4.5e-11  Score=80.40  Aligned_cols=70  Identities=31%  Similarity=0.575  Sum_probs=57.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      .+.+|++++++.||.|||+|.|. +..  + ...|.|.|||++..+.+++||.+.+++.++... ...|+.|.+.
T Consensus        33 ~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~-~~~~~~l~~~  102 (119)
T cd08377          33 ARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG-ERKWYALKDK  102 (119)
T ss_pred             EeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCC-CceEEECccc
Confidence            35699999999999999999997 542  2 367999999999988999999999999887543 3469998654

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.23  E-value=4.1e-11  Score=82.55  Aligned_cols=79  Identities=18%  Similarity=0.402  Sum_probs=57.4

Q ss_pred             CCccccccCCCCCccccEEEeCcccc-----CCC--CcceEEEEEEeCCCCCCCceeEEEEEeC-CcCCC----CCcCce
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRR-----SDL--KLRSIEITVWDYTRYGVNDFLGEVIIEL-SSSLC----TDEPEW  152 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~-----~~~--~~~~l~i~v~d~~~~~~~~~iG~~~l~l-~~~~~----~~~~~W  152 (174)
                      +++|++++++.||.|||.|.|. +..     .++  ....|.|+|||.+..+++++||++.+.. ..+..    ....+|
T Consensus        34 ~~kT~v~~~t~nP~Wne~~~f~-~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W  112 (135)
T cd04017          34 SQETEVIKETLSPTWDQTLIFD-EVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQW  112 (135)
T ss_pred             eeEeeeEcCCCCCccCcEEEEe-eeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceE
Confidence            4799999999999999999997 321     111  1256899999999999999999998742 22222    245699


Q ss_pred             eecccCC-CCCCC
Q psy6192         153 FYLTKHK-NSGSN  164 (174)
Q Consensus       153 ~~L~~~~-~~~~~  164 (174)
                      ++|...+ ..|.+
T Consensus       113 ~~L~~~~~~~Gei  125 (135)
T cd04017         113 FPIYKGGQSAGEL  125 (135)
T ss_pred             EEeecCCCchhhe
Confidence            9998644 33444

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.22  E-value=2.8e-11  Score=82.03  Aligned_cols=62  Identities=32%  Similarity=0.532  Sum_probs=53.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT  147 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~  147 (174)
                      +++|++++++.||+|||.|.|..+...++....+.|+|||.+.. ++++||++.++++++..+
T Consensus        53 ~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          53 KLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             ceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence            47999999999999999999952444555567899999999988 899999999999988765

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.22  E-value=2.5e-11  Score=80.87  Aligned_cols=68  Identities=24%  Similarity=0.380  Sum_probs=56.4

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC--CCCceEEec
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--DEPEWFYLT   74 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~--~~~~w~~L~   74 (174)
                      .++|++++++.||.|||+|.|. +...  ....|.|.|||++.+ .+++||.+.++|+++...  ....|++|.
T Consensus        26 ~~kT~v~~~t~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~w~~L~   95 (111)
T cd04052          26 VYTTRVKKKTNNPSWNASTEFL-VTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQWFPLS   95 (111)
T ss_pred             EEEEeeeccCCCCccCCceEEE-ecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccceeEECC
Confidence            3689999999999999999997 6433  356799999999998 899999999999987533  235699997

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.22  E-value=5.9e-11  Score=80.83  Aligned_cols=68  Identities=16%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      +++.||++++++.||.|||.|.|. +...   ...|.|.|||++..+ +++||.+++.+.... .....|++|.
T Consensus        34 ~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~-~~~~~~~~l~  101 (126)
T cd04046          34 GESVRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSNLLC-DEFLGQATLSADPND-SQTLRTLPLR  101 (126)
T ss_pred             CEEEEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECCCCC-CCceEEEEEecccCC-CcCceEEEcc
Confidence            356899999999999999999996 5432   467999999999875 799999999998643 3334566664

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.22  E-value=1.9e-11  Score=85.18  Aligned_cols=60  Identities=17%  Similarity=0.429  Sum_probs=52.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD  148 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~  148 (174)
                      +++|++++++.||+|||.|.|. +...   ...|.|+|||++.++++++||++.+++..+....
T Consensus        34 ~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          34 KVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             EEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence            4799999999999999999998 7644   4789999999999999999999999999876553

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.21  E-value=4e-11  Score=80.35  Aligned_cols=70  Identities=20%  Similarity=0.326  Sum_probs=56.1

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      ++|+++++ .||.|||+|.|. ++..++....|.|.+||.+....+.++|.+.|+.... ....++||+|.+.
T Consensus        32 ~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~-~~~~~~w~~L~~~  101 (117)
T cd08383          32 ARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL-GQGKDEWFPLTPV  101 (117)
T ss_pred             EecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC-CCcceeEEECccC
Confidence            68999888 999999999998 8776666678899999988776777888887766543 2356799999884

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.21  E-value=3.8e-11  Score=82.82  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=58.2

Q ss_pred             CCccccccCCCCCcc-ccEEEeCccccCCCCcceEEEEEEeCCCCCC---CceeEEEEEeCCcCCCCC----cCceeecc
Q psy6192          85 SNLSKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGV---NDFLGEVIIELSSSLCTD----EPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~w-ne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~---~~~iG~~~l~l~~~~~~~----~~~W~~L~  156 (174)
                      +++|+++++++||+| ||.|.|. +..    +..|.|+|||++..++   +++||++.+++.++....    ...||+|.
T Consensus        46 ~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~  120 (137)
T cd08691          46 ECRTSIVENTINPVWHREQFVFV-GLP----TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG  120 (137)
T ss_pred             eeeeeeEcCCCCCceEceEEEEE-cCC----CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC
Confidence            479999999999999 9999998 643    2579999999765433   789999999999987552    45799998


Q ss_pred             cCCCC
Q psy6192         157 KHKNS  161 (174)
Q Consensus       157 ~~~~~  161 (174)
                      ..+..
T Consensus       121 k~~~~  125 (137)
T cd08691         121 RRTPT  125 (137)
T ss_pred             cCCCC
Confidence            65543

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.21  E-value=3.8e-11  Score=81.51  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=59.5

Q ss_pred             ceEeceeec-CCCCCccCceEEcCCcCcCcC--CcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC------CceEE
Q psy6192           2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDL--KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE------PEWFY   72 (174)
Q Consensus         2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~--~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~------~~w~~   72 (174)
                      ++++|++.. ++.||.|||+|.|. +....+  ....|.|.|||++.++.+++||++.+++.++.....      ..||+
T Consensus        33 ~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~  111 (125)
T cd04051          33 HKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQ  111 (125)
T ss_pred             cccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEE
Confidence            467888875 58999999999998 765532  246799999999998899999999999998775543      34898


Q ss_pred             eccc
Q psy6192          73 LTKH   76 (174)
Q Consensus        73 L~~~   76 (174)
                      |...
T Consensus       112 l~~~  115 (125)
T cd04051         112 LRRP  115 (125)
T ss_pred             eECC
Confidence            8754

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.21  E-value=3.7e-11  Score=81.60  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CCcccccc-CCCCCccccEEEeCccccCCC--CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc------Cceeec
Q psy6192          85 SNLSKTLA-NTNDPKWNQSFFYPGIRRSDL--KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE------PEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~-~t~~P~wne~~~f~~~~~~~~--~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~------~~W~~L  155 (174)
                      +++|++.+ .+.||.|||.|.|. +....+  ....|.|+|||.+.++++++||++.+++.++.....      ..||.|
T Consensus        34 ~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l  112 (125)
T cd04051          34 KQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQL  112 (125)
T ss_pred             ccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEe
Confidence            47888875 58999999999998 765532  237899999999988899999999999999886632      589999


Q ss_pred             ccC
Q psy6192         156 TKH  158 (174)
Q Consensus       156 ~~~  158 (174)
                      ...
T Consensus       113 ~~~  115 (125)
T cd04051         113 RRP  115 (125)
T ss_pred             ECC
Confidence            863

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.20  E-value=5.7e-11  Score=81.01  Aligned_cols=70  Identities=31%  Similarity=0.608  Sum_probs=56.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-----------CCCceEEEEEEecccccCCCCCce
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEW   70 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-----------~~~~~lG~~~~~l~~~~~~~~~~w   70 (174)
                      ++++|+++++++||.|||+|.|. +...   ...|.|.|||++..           +.+++||.+.+++.++. .....|
T Consensus        33 ~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~-~~~~~w  107 (127)
T cd04027          33 TKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS-GEMDVW  107 (127)
T ss_pred             EeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc-CCCCeE
Confidence            45789999999999999999997 5322   35799999999853           46899999999998764 345579


Q ss_pred             EEeccc
Q psy6192          71 FYLTKH   76 (174)
Q Consensus        71 ~~L~~~   76 (174)
                      +.|.+.
T Consensus       108 ~~L~~~  113 (127)
T cd04027         108 YNLEKR  113 (127)
T ss_pred             EECccC
Confidence            999764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.18  E-value=1.3e-10  Score=79.06  Aligned_cols=66  Identities=18%  Similarity=0.338  Sum_probs=55.0

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++|++++++.||+|||.|.|. +...   ...|.|+|||.+.. ++++||.+.++++++ .....+|++|+.
T Consensus        37 ~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~~~-~d~~lG~~~~~l~~~-~~~~~~~~~l~~  102 (126)
T cd04046          37 VRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSNLL-CDEFLGQATLSADPN-DSQTLRTLPLRK  102 (126)
T ss_pred             EEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECCCC-CCCceEEEEEecccC-CCcCceEEEccc
Confidence            699999999999999999997 5432   37899999998876 589999999999875 345568899964

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.18  E-value=4.9e-11  Score=80.99  Aligned_cols=58  Identities=24%  Similarity=0.442  Sum_probs=49.1

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      .||+++++++||.|||+|.|. +....  ...|.|.|||++..+++++||++.++++....
T Consensus        36 ~kT~~v~~t~nP~Wne~f~f~-~~~~~--~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          36 DRDNYIPNTLNPVFGKMFELE-ATLPG--NSILKISVMDYDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             ceeeEEECCCCCccceEEEEE-ecCCC--CCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence            478888999999999999997 54332  46899999999999999999999999986553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.17  E-value=9e-11  Score=79.70  Aligned_cols=58  Identities=24%  Similarity=0.443  Sum_probs=49.6

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC  146 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~  146 (174)
                      .+|++++++.||+|||.|.|. +...  ....|.|+|||.+..+++++||++.+++++...
T Consensus        36 ~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          36 DRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLLGSDDLIGETVIDLEDRFF   93 (124)
T ss_pred             ceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence            678888899999999999997 5432  246899999999999999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.17  E-value=1.1e-10  Score=79.33  Aligned_cols=67  Identities=24%  Similarity=0.423  Sum_probs=55.3

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---C---ceEEec
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---P---EWFYLT   74 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~---~w~~L~   74 (174)
                      +++|+++++++||.|||+|.|. +..    ...|.|.|||++..+.+++||++.++|+++...+.   .   .|++|.
T Consensus        35 ~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~  107 (125)
T cd04021          35 PKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLS  107 (125)
T ss_pred             cEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEE
Confidence            6799999999999999999997 642    35799999999999999999999999988764322   1   277775

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.16  E-value=5.7e-11  Score=81.18  Aligned_cols=64  Identities=20%  Similarity=0.357  Sum_probs=56.6

Q ss_pred             CCCccccccCCCC--CccccEEEeCcccc---------------------CCCCcceEEEEEEeCCCCCCCceeEEEEEe
Q psy6192          84 LSNLSKTLANTND--PKWNQSFFYPGIRR---------------------SDLKLRSIEITVWDYTRYGVNDFLGEVIIE  140 (174)
Q Consensus        84 ~~~kT~~~~~t~~--P~wne~~~f~~~~~---------------------~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~  140 (174)
                      .+++|.+.++++|  |.||+.|.|+ +..                     +.+....|.++|||.|.++++++||.++|+
T Consensus        39 ~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~  117 (133)
T cd08374          39 DKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELD  117 (133)
T ss_pred             cccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEE
Confidence            3689999999999  9999999998 765                     456678999999999999999999999999


Q ss_pred             CCcCCCCC
Q psy6192         141 LSSSLCTD  148 (174)
Q Consensus       141 l~~~~~~~  148 (174)
                      +..+....
T Consensus       118 l~~l~~~~  125 (133)
T cd08374         118 LSILPRPA  125 (133)
T ss_pred             hhhccccc
Confidence            99887653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.16  E-value=1.5e-10  Score=81.81  Aligned_cols=68  Identities=22%  Similarity=0.430  Sum_probs=55.6

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      .||++++++.||.|||+|.|. +...   ...|.|.|||++.++ +++||.+.++++.+.... ...|++|.+.
T Consensus        72 ~rT~v~~~~~nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~  140 (158)
T cd04015          72 ARTRVIENSENPVWNESFHIY-CAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS  140 (158)
T ss_pred             eEEEEeCCCCCCccceEEEEE-ccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence            589999999999999999997 6432   257999999999876 589999999999876544 3459999654

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.15  E-value=6.6e-11  Score=80.08  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=60.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc-C-ceeecccCC-CC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-P-EWFYLTKHK-NS  161 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~-~-~W~~L~~~~-~~  161 (174)
                      .++|++++++.||.|||.|.|. +..   ....|.|+|||.+..+++++||++.+++.++...+. . .|+.|...+ ..
T Consensus        38 ~~kT~~~~~~~~P~Wne~~~~~-v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~  113 (124)
T cd04044          38 LARTKVKKDTSNPVWNETKYIL-VNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV  113 (124)
T ss_pred             ceEeeeecCCCCCcceEEEEEE-eCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc
Confidence            4799999999999999999998 662   247899999999998899999999999999887643 3 345554432 23


Q ss_pred             CCCC
Q psy6192         162 GSNP  165 (174)
Q Consensus       162 ~~~~  165 (174)
                      |.+.
T Consensus       114 G~i~  117 (124)
T cd04044         114 GELN  117 (124)
T ss_pred             eEEE
Confidence            5443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.14  E-value=1.2e-10  Score=80.93  Aligned_cols=70  Identities=13%  Similarity=0.264  Sum_probs=56.0

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCC-C---CCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTR-Y---GVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~-~---~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~  159 (174)
                      .||+++.++.||.|+|.|.|. ..+.  . ..+.|.||+.+. .   .++.+||.+.|+++++..+ ..+.||+|.+..
T Consensus        41 aRT~v~~~~~nP~W~E~F~f~-~~~~--~-~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~  115 (146)
T cd04013          41 ARTTSKLKTDTLFWGEHFEFS-NLPP--V-SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPK  115 (146)
T ss_pred             EEEEEEcCCCCCcceeeEEec-CCCc--c-cEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCC
Confidence            489999999999999999998 4433  2 569999975432 2   2578999999999999866 467999999843

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.13  E-value=1.3e-10  Score=78.65  Aligned_cols=62  Identities=23%  Similarity=0.405  Sum_probs=53.6

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE   67 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~   67 (174)
                      ++.||+++.++.||.|||.|.|. +.  . ....|.|.|||++..+.+++||.+.++++++.....
T Consensus        37 ~~~kT~~~~~~~~P~Wne~~~~~-v~--~-~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~   98 (124)
T cd04044          37 ELARTKVKKDTSNPVWNETKYIL-VN--S-LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE   98 (124)
T ss_pred             cceEeeeecCCCCCcceEEEEEE-eC--C-CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCcc
Confidence            46799999999999999999997 66  2 246899999999999999999999999998876544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.12  E-value=2.9e-10  Score=76.15  Aligned_cols=71  Identities=20%  Similarity=0.306  Sum_probs=54.0

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      .++|+++++ .||.|||+|.|. +...++....|.|.+||.+...++..+|.+.+..... ......|++|.+.
T Consensus        31 ~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~~-~~~~~~w~~L~~~  101 (117)
T cd08383          31 VARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL-GQGKDEWFPLTPV  101 (117)
T ss_pred             eEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCCCeeEEEEEEecCcCC-CCcceeEEECccC
Confidence            368999988 999999999998 8776655577889999988777777888776554333 2234559999764

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.11  E-value=1.2e-10  Score=79.57  Aligned_cols=63  Identities=22%  Similarity=0.372  Sum_probs=55.5

Q ss_pred             ceEeceeecCCCC--CccCceEEcCCcCc---------------------CcCCcceEEEEEEeCCCCCCCceEEEEEEe
Q psy6192           2 FKEFAKTLANTND--PKWNQSFFYPGIRR---------------------SDLKLRSIEITVWDYTRYGVNDFLGEVIIE   58 (174)
Q Consensus         2 ~k~rT~~~~~t~n--P~w~E~f~f~~v~~---------------------~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~   58 (174)
                      .+++|.++.+++|  |.||+.|.|+ +..                     +.+...+|.+.|||.|.++++++||+++++
T Consensus        39 ~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~  117 (133)
T cd08374          39 DKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELD  117 (133)
T ss_pred             cccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEE
Confidence            4689999999999  9999999998 655                     555667899999999999999999999999


Q ss_pred             cccccCC
Q psy6192          59 LSSSLCT   65 (174)
Q Consensus        59 l~~~~~~   65 (174)
                      |..+...
T Consensus       118 l~~l~~~  124 (133)
T cd08374         118 LSILPRP  124 (133)
T ss_pred             hhhcccc
Confidence            9877654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.11  E-value=1.8e-10  Score=76.92  Aligned_cols=53  Identities=19%  Similarity=0.460  Sum_probs=44.4

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeC-------CCCCCCceeEEEEEeCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-------TRYGVNDFLGEVIIELS  142 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~-------~~~~~~~~iG~~~l~l~  142 (174)
                      +.||+++++|+||+|||.|.|. +..    ...|.+.|||+       +..+.+++||...+.++
T Consensus        32 ~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          32 KAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             eeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence            4799999999999999999998 752    36899999997       46678999977777665

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.09  E-value=1.9e-10  Score=78.27  Aligned_cols=70  Identities=23%  Similarity=0.425  Sum_probs=58.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC--c----CceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--E----PEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~--~----~~W~~L~~~  158 (174)
                      .++|++++++.||+|||.|.|. +..    ...|.|+|||.+..+.+++||++.+++.++....  .    ..|+.|...
T Consensus        35 ~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~  109 (125)
T cd04021          35 PKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSE  109 (125)
T ss_pred             cEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEcc
Confidence            3799999999999999999998 643    3689999999999999999999999999987541  1    248888764


Q ss_pred             C
Q psy6192         159 K  159 (174)
Q Consensus       159 ~  159 (174)
                      +
T Consensus       110 ~  110 (125)
T cd04021         110 N  110 (125)
T ss_pred             C
Confidence            4

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.08  E-value=4.2e-10  Score=97.59  Aligned_cols=143  Identities=17%  Similarity=0.295  Sum_probs=100.6

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC---------------
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP---------------   68 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~---------------   68 (174)
                      -||+++++++||+|||+|...   .+.+ ...|.++|||.+..+.|+++|...++|..+......               
T Consensus       473 gkT~v~~nt~nPvwNEt~Yi~---lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vG  548 (1227)
T COG5038         473 GKTRVKKNTLNPVWNETFYIL---LNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVG  548 (1227)
T ss_pred             CccceeeccCCccccceEEEE---eccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeeccCccce
Confidence            389999999999999998764   3344 367999999999999999999999999876554321               


Q ss_pred             ------ceEEecccc------------eE---ecc-----------C---------------CCCccccccCCCCCcccc
Q psy6192          69 ------EWFYLTKHT------------LE---LQF-----------P---------------LSNLSKTLANTNDPKWNQ  101 (174)
Q Consensus        69 ------~w~~L~~~~------------~~---l~~-----------p---------------~~~kT~~~~~t~~P~wne  101 (174)
                            .|++.....            .+   +..           +               ..+.|+.++.+.+|.||+
T Consensus       549 rL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~  628 (1227)
T COG5038         549 RLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNL  628 (1227)
T ss_pred             EEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceee
Confidence                  122211100            00   000           0               035567888999999999


Q ss_pred             EEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc--Cceeecc
Q psy6192         102 SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--PEWFYLT  156 (174)
Q Consensus       102 ~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~--~~W~~L~  156 (174)
                      ++.-.   -.......+.+.+.|..   ..+.||....++.++.....  ..||++.
T Consensus       629 ~~~~~---v~~~~ns~~~~~~~d~~---~g~~i~~~~~~l~~li~~t~dt~~~f~~~  679 (1227)
T COG5038         629 QYNVL---VTDRKNSSIKVVTFDVQ---SGKVIATEGSTLPDLIDRTLDTFLVFPLR  679 (1227)
T ss_pred             ecceE---eccCcceeEEEEecccc---cCceeccccccchHhhhccccceEEEEcC
Confidence            87744   44455688999998864   34578888888888766633  3788887

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.08  E-value=2e-10  Score=76.28  Aligned_cols=60  Identities=32%  Similarity=0.507  Sum_probs=48.6

Q ss_pred             eEeceeecCCCCCccCceEEcCC--cCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPG--IRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~--v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      +++|+++++++||.|| +|.|..  +...+. ...|.|+|||++..+++++||.+.++++.+..
T Consensus        39 ~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~-~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          39 VYRTEVIKNTLNPVWK-PFTIPLQKLCNGDY-DRPIKIEVYDYDSSGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             EEeeeEeccCCCCceE-EEEEEHHHhcCCCc-CCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhc
Confidence            4799999999999999 677651  112222 36899999999999999999999999998763

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.08  E-value=1.6e-10  Score=76.72  Aligned_cols=57  Identities=33%  Similarity=0.580  Sum_probs=48.0

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCC----cceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLK----LRSIEITVWDYTRYGVNDFLGEVIIELSSSLC  146 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~----~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~  146 (174)
                      ++|++++++.||+|| .|.|. +  ..+.    ...|.|+|||++..+++++||++.++++++..
T Consensus        40 ~kT~vi~~t~nP~Wn-~f~~~-~--~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          40 YRTEVIKNTLNPVWK-PFTIP-L--QKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             EeeeEeccCCCCceE-EEEEE-H--HHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhc
Confidence            799999999999999 56665 3  2221    37899999999999999999999999999873

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.03  E-value=1.1e-09  Score=76.06  Aligned_cols=69  Identities=12%  Similarity=0.283  Sum_probs=54.0

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-C---CCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-G---VNDFLGEVIIELSSSLCTD-EPEWFYLTKHT   77 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-~---~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~   77 (174)
                      ||+++.++.||.|+|.|.|. ....   ...|.|.||+.+.. +   .+.+||.+.+++..+.... ...||+|.+..
T Consensus        42 RT~v~~~~~nP~W~E~F~f~-~~~~---~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~  115 (146)
T cd04013          42 RTTSKLKTDTLFWGEHFEFS-NLPP---VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPK  115 (146)
T ss_pred             EEEEEcCCCCCcceeeEEec-CCCc---ccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCC
Confidence            99999999999999999997 4333   24699999875532 2   5789999999999887554 34599997654

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.01  E-value=1.6e-10  Score=72.08  Aligned_cols=73  Identities=16%  Similarity=0.323  Sum_probs=63.6

Q ss_pred             eccCCCCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeec
Q psy6192          80 LQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL  155 (174)
Q Consensus        80 l~~p~~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L  155 (174)
                      +.-|...||++++...||+|+|+|+|. +...++.+.+|.++|+.  ...++..||.+.++++++...+..||..+
T Consensus        31 l~kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~geeE~~HW~e~  103 (103)
T cd08684          31 LPKPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLSTQETDHWLEI  103 (103)
T ss_pred             cCCCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCccceeeEEEeecccCCHHHhhhhhcC
Confidence            344567899999999999999999999 99999999999999988  55678899999999998877777889753

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.00  E-value=1.5e-09  Score=73.76  Aligned_cols=69  Identities=25%  Similarity=0.379  Sum_probs=54.7

Q ss_pred             ceEeceeecCCC-CCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~-nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      .++||+++.++. ||.|||+|.|. +....  ...|.|.|||.+.. ++++||.+.++++.+.  ....|++|.+.
T Consensus        42 ~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~--~g~~~~~l~~~  111 (128)
T cd00275          42 AKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVYDEDSG-DDDFLGQACLPLDSLR--QGYRHVPLLDS  111 (128)
T ss_pred             CcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEEeCCCC-CCcEeEEEEEEhHHhc--CceEEEEecCC
Confidence            357899988776 99999999997 65433  34799999999988 8999999999999874  34457777543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03008 Phospholipase D delta

Probab=98.98  E-value=7.4e-10  Score=94.35  Aligned_cols=79  Identities=19%  Similarity=0.392  Sum_probs=64.2

Q ss_pred             ceEeccCC--CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCcee
Q psy6192          77 TLELQFPL--SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWF  153 (174)
Q Consensus        77 ~~~l~~p~--~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~  153 (174)
                      -..+.++.  +.||++++++.||+|||+|.|. ++..   ...|.|+|+|.+.++ +++||.+.|++.++..+ ..+.|+
T Consensus        80 YV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl  154 (868)
T PLN03008         80 YVTVVVPQATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWF  154 (868)
T ss_pred             eEEEEECCcceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEE
Confidence            34445554  3489999999999999999998 7653   268999999999986 58999999999998877 467999


Q ss_pred             ecccCCC
Q psy6192         154 YLTKHKN  160 (174)
Q Consensus       154 ~L~~~~~  160 (174)
                      +|....+
T Consensus       155 ~Ll~~~~  161 (868)
T PLN03008        155 PVLGASG  161 (868)
T ss_pred             EccccCC
Confidence            9988543

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=98.98  E-value=1.3e-09  Score=74.07  Aligned_cols=68  Identities=24%  Similarity=0.394  Sum_probs=54.9

Q ss_pred             CCccccccCCC-CCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANTN-DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~-~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      +++|++++++. ||+|||+|.|. +...+  ...|.+.|||.+.. ++++||++.++++++.  ....|++|.+.
T Consensus        43 ~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~--~g~~~~~l~~~  111 (128)
T cd00275          43 KFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVYDEDSG-DDDFLGQACLPLDSLR--QGYRHVPLLDS  111 (128)
T ss_pred             cEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEEeCCCC-CCcEeEEEEEEhHHhc--CceEEEEecCC
Confidence            47888877775 99999999998 66443  25789999999887 8999999999999874  33478888763

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.95  E-value=6.5e-09  Score=90.41  Aligned_cols=67  Identities=24%  Similarity=0.268  Sum_probs=57.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceee
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFY  154 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~  154 (174)
                      .++|+++++|+||+|||.+... +.+..  ...+.|.|+|++...+++.||++.++|..+..++.+.|.-
T Consensus      1074 vyktkv~KktlNPvwNEe~~i~-v~~r~--~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i 1140 (1227)
T COG5038        1074 VYKTKVVKKTLNPVWNEEFTIE-VLNRV--KDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNI 1140 (1227)
T ss_pred             cccccchhccCCCCccccceEe-eeccc--cceEEEEEeecccCCCccccccccccHhhcCcCCccceee
Confidence            5899999999999999999976 55443  4589999999999999999999999999998876655543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.94  E-value=9.3e-10  Score=101.28  Aligned_cols=76  Identities=17%  Similarity=0.391  Sum_probs=61.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC-CCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK-NSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~-~~~  162 (174)
                      ++||++++++.||+|||.|.|. +..+.. +..+.|+|||++.++ ++.||++.|++.++... ....||+|.+++ ..|
T Consensus      2012 ~~kTkvvk~~~nP~Wne~f~~~-~~~p~~-~~~l~iev~d~d~f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G 2088 (2102)
T PLN03200       2012 PRQTKVVSHSSSPEWKEGFTWA-FDSPPK-GQKLHISCKSKNTFG-KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDG 2088 (2102)
T ss_pred             cccccccCCCCCCCcccceeee-ecCCCC-CCceEEEEEecCccC-CCCCceEEEEHHHHhcCceeeeeeecCcccccCC
Confidence            4789999999999999999976 544322 367999999999995 45899999999998866 567999999854 355


Q ss_pred             C
Q psy6192         163 S  163 (174)
Q Consensus       163 ~  163 (174)
                      .
T Consensus      2089 ~ 2089 (2102)
T PLN03200       2089 S 2089 (2102)
T ss_pred             C
Confidence            5

>PLN03008 Phospholipase D delta

Probab=98.94  E-value=1.9e-09  Score=91.85  Aligned_cols=69  Identities=20%  Similarity=0.425  Sum_probs=57.6

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC-ceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-EWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~-~w~~L~~~   76 (174)
                      ..||++++++.||+|||+|.|. +...   ...|.|.|||+|.++. ++||.+.+++.++...... .|++|...
T Consensus        90 v~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~  159 (868)
T PLN03008         90 LARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASGERISGWFPVLGA  159 (868)
T ss_pred             eeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCC-ceeEEEEEEHHHcCCCCceEEEEEcccc
Confidence            3589999999999999999998 7652   3579999999999975 8999999999998766543 59998653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.84  E-value=3.8e-09  Score=97.40  Aligned_cols=71  Identities=15%  Similarity=0.339  Sum_probs=56.6

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~   75 (174)
                      .++||++++++.||.|||.|.|. +..... ...|.|+|||+|.+++ +.||.+.+++..+..... ..||+|.+
T Consensus      2011 ~~~kTkvvk~~~nP~Wne~f~~~-~~~p~~-~~~l~iev~d~d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200       2011 PPRQTKVVSHSSSPEWKEGFTWA-FDSPPK-GQKLHISCKSKNTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred             CcccccccCCCCCCCcccceeee-ecCCCC-CCceEEEEEecCccCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence            37899999999999999999865 333222 3569999999999955 599999999999876544 45999975

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=98.83  E-value=3.1e-09  Score=66.52  Aligned_cols=51  Identities=37%  Similarity=0.775  Sum_probs=45.2

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEE
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVI   56 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~   56 (174)
                      +++|++++++.+|.|+|+|.|. +......  .|.|.|||.+..+++++||++.
T Consensus        35 ~~~T~~~~~~~~P~w~e~~~~~-~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   35 KYKTKVKKNTSNPVWNEEFEFP-LDDPDLD--SLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             EEEECCBSSBSSEEEEEEEEEE-ESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred             eeeeeeeeccccceeeeeeeee-eeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence            5899999999999999999998 7776655  4999999999999999999973

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.81  E-value=1.2e-09  Score=68.26  Aligned_cols=66  Identities=14%  Similarity=0.278  Sum_probs=58.0

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEE
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFY   72 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~   72 (174)
                      .||+++++..||.|+|+|+|+ +....+.+-+|.|.|+.  ...+.+.||.|++.++.+..++..+|.+
T Consensus        37 ~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~geeE~~HW~e  102 (103)
T cd08684          37 FKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLSTQETDHWLE  102 (103)
T ss_pred             ccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCCccceeeEEEeecccCCHHHhhhhhc
Confidence            578999999999999999998 99999998999999988  5578899999999999887776666754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.81  E-value=1.6e-08  Score=64.86  Aligned_cols=61  Identities=38%  Similarity=0.671  Sum_probs=51.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT   65 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~   65 (174)
                      ...+|+++.++.||.|||+|.|. +....  ...|.|.|||.+..+.+.++|.+.+++..+...
T Consensus        35 ~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       35 EKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             ceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence            35789999999999999999998 65544  578999999999888899999999998876554

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1328|consensus

Probab=98.80  E-value=1.9e-09  Score=89.79  Aligned_cols=77  Identities=23%  Similarity=0.491  Sum_probs=64.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC-----------------------------------
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-----------------------------------  129 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~-----------------------------------  129 (174)
                      .+-|+++++|+||.|+|.|-|. +  ++.....+.+.+||+|.-.                                   
T Consensus       178 Ikatsvk~~TLnPkW~EkF~F~-I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d  254 (1103)
T KOG1328|consen  178 IKATSVKKKTLNPKWSEKFQFT-I--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDD  254 (1103)
T ss_pred             hhhcccccccCCcchhhheeee-h--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCc
Confidence            3568899999999999999998 4  4555678999999876421                                   


Q ss_pred             -CCceeEEEEEeCCcCCCCCcCceeecccCCCCCCC
Q psy6192         130 -VNDFLGEVIIELSSSLCTDEPEWFYLTKHKNSGSN  164 (174)
Q Consensus       130 -~~~~iG~~~l~l~~~~~~~~~~W~~L~~~~~~~~~  164 (174)
                       .|+|+|++.|++.++...+.++||.|++..+.+.|
T Consensus       255 ~tDDFLGciNipl~EiP~~Gld~WFkLepRS~~S~V  290 (1103)
T KOG1328|consen  255 CTDDFLGCINIPLAEIPPDGLDQWFKLEPRSDKSKV  290 (1103)
T ss_pred             cccccccccccchhcCCcchHHHHhccCcccccccc
Confidence             38899999999999999999999999997776554

>cd00030 C2 C2 domain

Probab=98.78  E-value=1.9e-08  Score=64.22  Aligned_cols=68  Identities=35%  Similarity=0.688  Sum_probs=56.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC-CC-CcCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-CT-DEPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~-~~-~~~~W~~L  155 (174)
                      .++|+++..+.||.|||.|.|. +...  ....+.|.||+......+.+||.+.+++..+. .. ....|++|
T Consensus        33 ~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          33 KFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             eEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence            4688889889999999999998 6543  34779999999988877899999999999987 33 45688875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd00030 C2 C2 domain

Probab=98.77  E-value=3.2e-08  Score=63.17  Aligned_cols=69  Identities=36%  Similarity=0.667  Sum_probs=55.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc-CC-CCCceEEe
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-CT-DEPEWFYL   73 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~-~~-~~~~w~~L   73 (174)
                      ...+|.++.++.||.|||.|.|. +...  ....|.|.||+.+..+.+.++|.+.+.+..+. .. ....|++|
T Consensus        32 ~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          32 QKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             ceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence            45789999999999999999997 6543  24679999999999888899999999998876 22 33447654

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02952 phosphoinositide phospholipase C

Probab=98.76  E-value=1.7e-08  Score=84.18  Aligned_cols=70  Identities=23%  Similarity=0.357  Sum_probs=58.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      .+++|+++.++.||+|||+|.|. +...++.  .|+|.|||+|..+.++++|...+++..+..+  ..|++|...
T Consensus       513 ~~~kTkvi~nN~nPvWnE~F~F~-i~~PELA--llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G--yR~VpL~~~  582 (599)
T PLN02952        513 AKKKTKIIEDNWYPAWNEEFSFP-LTVPELA--LLRIEVREYDMSEKDDFGGQTCLPVSELRPG--IRSVPLHDK  582 (599)
T ss_pred             cceeeeeccCCCCcccCCeeEEE-EEcCCcc--EEEEEEEecCCCCCCCeEEEEEcchhHhcCC--ceeEeCcCC
Confidence            35789999999999999999998 7766653  7999999999998999999999999877543  347777544

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=98.74  E-value=7.6e-09  Score=64.75  Aligned_cols=50  Identities=36%  Similarity=0.792  Sum_probs=44.5

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEE
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVI  138 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~  138 (174)
                      ++|++++++.+|.|||.|.|. +......  .|.|.|||.+..+++++||++.
T Consensus        36 ~~T~~~~~~~~P~w~e~~~~~-~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~   85 (85)
T PF00168_consen   36 YKTKVKKNTSNPVWNEEFEFP-LDDPDLD--SLSFEVWDKDSFGKDELIGEVK   85 (85)
T ss_dssp             EEECCBSSBSSEEEEEEEEEE-ESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred             eeeeeeeccccceeeeeeeee-eeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence            799999999999999999998 7776655  3999999999998899999873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02223 phosphoinositide phospholipase C

Probab=98.74  E-value=2e-08  Score=82.35  Aligned_cols=68  Identities=22%  Similarity=0.366  Sum_probs=56.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|++..++.||+|||.|.|. +..+++.  .|.|.|+|++....++|+|+..|++.++..+  -++.+|.+
T Consensus       452 ~~kT~v~nNg~nPvWne~F~F~-i~~PELA--lLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G--yR~VpL~~  519 (537)
T PLN02223        452 IMKTTVKNNEWKPTWGEEFTFP-LTYPDLA--LISFEVYDYEVSTADAFCGQTCLPVSELIEG--IRAVPLYD  519 (537)
T ss_pred             eeEEEeCCCCcCceecceeEEE-EEccCce--EEEEEEEecCCCCCCcEEEEEecchHHhcCC--ceeEeccC
Confidence            4678888888999999999999 8776654  7899999999888999999999999987443  35577766

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=98.73  E-value=2.7e-08  Score=63.75  Aligned_cols=61  Identities=36%  Similarity=0.685  Sum_probs=51.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD  148 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~  148 (174)
                      .++|+.+.++.+|.|||.|.|. +....  ...|.|+|||....+.+.++|.+.+++.++....
T Consensus        36 ~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       36 KKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             eEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccCc
Confidence            4789999888999999999998 65543  5789999999887777899999999998876553

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02952 phosphoinositide phospholipase C

Probab=98.73  E-value=2.6e-08  Score=83.14  Aligned_cols=68  Identities=22%  Similarity=0.363  Sum_probs=58.4

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|+++.++.||+|||.|.|. +..+++.  .+.|.|+|++..+.++|+|+..|+++.+..+-  +|++|.+
T Consensus       514 ~~kTkvi~nN~nPvWnE~F~F~-i~~PELA--llrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy--R~VpL~~  581 (599)
T PLN02952        514 KKKTKIIEDNWYPAWNEEFSFP-LTVPELA--LLRIEVREYDMSEKDDFGGQTCLPVSELRPGI--RSVPLHD  581 (599)
T ss_pred             ceeeeeccCCCCcccCCeeEEE-EEcCCcc--EEEEEEEecCCCCCCCeEEEEEcchhHhcCCc--eeEeCcC
Confidence            6789999999999999999998 7766654  78999999998889999999999999875443  5899976

>PLN02223 phosphoinositide phospholipase C

Probab=98.73  E-value=1.8e-08  Score=82.60  Aligned_cols=69  Identities=22%  Similarity=0.354  Sum_probs=55.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      +++|++..++.||+|||+|.|. +...++.  .|+|.|+|+|..+.++++|+..+++..+..  +...++|...
T Consensus       452 ~~kT~v~nNg~nPvWne~F~F~-i~~PELA--lLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~--GyR~VpL~~~  520 (537)
T PLN02223        452 IMKTTVKNNEWKPTWGEEFTFP-LTYPDLA--LISFEVYDYEVSTADAFCGQTCLPVSELIE--GIRAVPLYDE  520 (537)
T ss_pred             eeEEEeCCCCcCceecceeEEE-EEccCce--EEEEEEEecCCCCCCcEEEEEecchHHhcC--CceeEeccCC
Confidence            4678888899999999999998 8776654  799999999998899999999999987653  3334556443

>KOG1327|consensus

Probab=98.64  E-value=8.5e-08  Score=78.24  Aligned_cols=135  Identities=22%  Similarity=0.354  Sum_probs=96.1

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC----CCCceEEEEEEecccccCCCCCc-----------
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY----GVNDFLGEVIIELSSSLCTDEPE-----------   69 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~----~~~~~lG~~~~~l~~~~~~~~~~-----------   69 (174)
                      ||.++.+.+||.|-+.|... .-++..  +.|++.++|.+..    ...+++|.+.+.++.+.......           
T Consensus        44 rte~i~~~~~p~f~~~~~l~-y~fE~v--Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~  120 (529)
T KOG1327|consen   44 RTEVIRNVLNPFFTKKFLLQ-YRFEKV--QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA  120 (529)
T ss_pred             ceeeeeccCCccceeeechh-heeeee--eeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence            79999999999999998776 666665  4799999997753    56799999999987655432110           


Q ss_pred             -----------------eEEecccceEe--------ccC--------------CCCccccccCCCCCccccEEEeCcccc
Q psy6192          70 -----------------WFYLTKHTLEL--------QFP--------------LSNLSKTLANTNDPKWNQSFFYPGIRR  110 (174)
Q Consensus        70 -----------------w~~L~~~~~~l--------~~p--------------~~~kT~~~~~t~~P~wne~~~f~~~~~  110 (174)
                                       +..+.-...++        ..|              ..++|.+.+++++|.|.+.   . ++.
T Consensus       121 ~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~---~-i~~  196 (529)
T KOG1327|consen  121 GSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF---S-ISL  196 (529)
T ss_pred             CcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc---c-cch
Confidence                             10000000000        001              1578999999999999974   2 333


Q ss_pred             CCCC----cceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192         111 SDLK----LRSIEITVWDYTRYGVNDFLGEVIIELSSSLC  146 (174)
Q Consensus       111 ~~~~----~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~  146 (174)
                      ..++    +..+.|.+||++..+++++||++...+.++..
T Consensus       197 ~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  197 QSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             hhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            3333    37889999999999899999999999888754

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.61  E-value=6.3e-08  Score=80.59  Aligned_cols=69  Identities=22%  Similarity=0.351  Sum_probs=55.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~   75 (174)
                      .++||+++.++.||.|||+|.|. +...++.  .|+|.|+|+|..+.++++|...+++..+..+  ...++|..
T Consensus       495 ~~~rTk~v~nn~nP~W~e~f~F~-i~~PeLA--llRf~V~d~D~~~~ddfigq~~lPv~~Lr~G--yR~V~L~~  563 (581)
T PLN02222        495 VMKKTKTLEDNWIPAWDEVFEFP-LTVPELA--LLRLEVHEYDMSEKDDFGGQTCLPVWELSQG--IRAFPLHS  563 (581)
T ss_pred             ceeeeEecCCCCCcccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCcEEEEEEcchhhhhCc--cceEEccC
Confidence            35789999999999999999998 7766654  7999999999888899999999999876543  22345543

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.60  E-value=5.5e-08  Score=81.09  Aligned_cols=69  Identities=22%  Similarity=0.301  Sum_probs=56.0

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      ++||++..++.||.|||+|.|. +...++.  .|+|.|+|+|....++++|+..+++..+..+  ...++|...
T Consensus       513 ~~kT~v~~n~~nP~Wneef~F~-l~vPELA--llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G--yR~V~L~~~  581 (598)
T PLN02230        513 MEKTKIEYDTWTPIWNKEFIFP-LAVPELA--LLRVEVHEHDINEKDDFGGQTCLPVSEIRQG--IHAVPLFNR  581 (598)
T ss_pred             ccceeccCCCCCCccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCCEEEEEEcchHHhhCc--cceEeccCC
Confidence            4688888999999999999998 7776654  7999999999988999999999999876543  333455443

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.54  E-value=1.1e-07  Score=79.42  Aligned_cols=68  Identities=21%  Similarity=0.300  Sum_probs=56.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|++..++.||+|||.|.|. +..+++.  .|.|.|+|++...+++|+|+..|++.++..+  -+..+|.+
T Consensus       513 ~~kT~v~~n~~nP~Wneef~F~-l~vPELA--llRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G--yR~V~L~~  580 (598)
T PLN02230        513 MEKTKIEYDTWTPIWNKEFIFP-LAVPELA--LLRVEVHEHDINEKDDFGGQTCLPVSEIRQG--IHAVPLFN  580 (598)
T ss_pred             ccceeccCCCCCCccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCCEEEEEEcchHHhhCc--cceEeccC
Confidence            5788998899999999999999 7766654  7899999999888999999999999987443  33467766

>KOG0169|consensus

Probab=98.53  E-value=7e-08  Score=81.07  Aligned_cols=60  Identities=25%  Similarity=0.477  Sum_probs=52.9

Q ss_pred             eEece-eecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192           3 KEFAK-TLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT   65 (174)
Q Consensus         3 k~rT~-~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~   65 (174)
                      +++|+ +..++.||.|+|+|.|. ++..++.  .|+|.|+|+|..++|+|+|+..+++..+..+
T Consensus       658 ~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G  718 (746)
T KOG0169|consen  658 EQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSELRQG  718 (746)
T ss_pred             hhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEEEEecCCCCcccccceeeccHHHhhCc
Confidence            46888 56788999999999999 8888875  7999999999999999999999999877643

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.51  E-value=1.5e-07  Score=78.46  Aligned_cols=68  Identities=22%  Similarity=0.364  Sum_probs=56.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|+++.++.||+|||.|.|. +..+++.  .|.|.|+|++....++|||+..|++..+..+  -+..+|.+
T Consensus       496 ~~rTk~v~nn~nP~W~e~f~F~-i~~PeLA--llRf~V~d~D~~~~ddfigq~~lPv~~Lr~G--yR~V~L~~  563 (581)
T PLN02222        496 MKKTKTLEDNWIPAWDEVFEFP-LTVPELA--LLRLEVHEYDMSEKDDFGGQTCLPVWELSQG--IRAFPLHS  563 (581)
T ss_pred             eeeeEecCCCCCcccCCeeEEE-EEcCcee--EEEEEEEECCCCCCCcEEEEEEcchhhhhCc--cceEEccC
Confidence            6789999998999999999998 7766654  7899999999888899999999999987443  34466655

>KOG1326|consensus

Probab=98.51  E-value=9.2e-08  Score=82.19  Aligned_cols=54  Identities=20%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS   61 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~   61 (174)
                      ++..+.+|+||+|++.|.+. .+..  ....|.+.|||+|..+.++.+|+..++|..
T Consensus       650 ~~~yip~tlnPVfgkmfel~-~~lp--~ek~l~v~vyd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  650 RAHYIPNTLNPVFGKMFELE-CLLP--FEKDLIVEVYDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             hhhcCcCCCCcHHHHHHHhh-cccc--hhhcceeEEEEeecccccchhhceehhhhh
Confidence            56788999999999988765 3322  246789999999999999999999998854

>KOG0169|consensus

Probab=98.43  E-value=1.9e-07  Score=78.51  Aligned_cols=68  Identities=24%  Similarity=0.411  Sum_probs=56.6

Q ss_pred             CCccc-cccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSK-TLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~-~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      .++|+ +..++-||.|+|.|.|. +..+++.  -|.+.|+|++..++|+|+|+..|+++++..+=+ + .+|.+
T Consensus       658 ~~~Tk~v~~NgfnP~W~e~f~F~-l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR-h-VpL~~  726 (746)
T KOG0169|consen  658 EQKTKVVKNNGFNPIWDEEFEFQ-LSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR-H-VPLLS  726 (746)
T ss_pred             hhhceeeccCCcCcccCCeEEEE-Eecccee--EEEEEEEecCCCCcccccceeeccHHHhhCcee-e-eeecC
Confidence            67899 66778999999999999 8887766  789999999999999999999999998755422 2 55555

>KOG1011|consensus

Probab=98.42  E-value=1.3e-07  Score=78.54  Aligned_cols=72  Identities=26%  Similarity=0.605  Sum_probs=57.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC-----------CCCceeEEEEEeCCcCCCCCcCcee
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEWF  153 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~-----------~~~~~iG~~~l~l~~~~~~~~~~W~  153 (174)
                      +++|+++...+||+|||.|+|. ...+   ..++.+.|||.+..           .+|+|+|+..|.+..+ .+.+.-||
T Consensus       328 krrtrti~~~lnpvw~ekfhfe-chns---tdrikvrvwded~dlksklrqkl~resddflgqtvievrtl-sgemdvwy  402 (1283)
T KOG1011|consen  328 KRRTRTIHQELNPVWNEKFHFE-CHNS---TDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTL-SGEMDVWY  402 (1283)
T ss_pred             chhhHhhhhccchhhhhheeee-ecCC---CceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEec-ccchhhhc
Confidence            6788999999999999999998 3322   37899999997643           2688999999998765 45677999


Q ss_pred             ecccCCCC
Q psy6192         154 YLTKHKNS  161 (174)
Q Consensus       154 ~L~~~~~~  161 (174)
                      .|..+.+.
T Consensus       403 nlekrtdk  410 (1283)
T KOG1011|consen  403 NLEKRTDK  410 (1283)
T ss_pred             chhhccch
Confidence            99885554

>KOG0905|consensus

Probab=98.37  E-value=2.2e-07  Score=81.20  Aligned_cols=74  Identities=26%  Similarity=0.389  Sum_probs=66.1

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      |+||+++++|.||.|||++++.+++.+.+..+.|.++||..+.+..+.++|.+.++|..+.... ...||.|...
T Consensus      1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            6899999999999999999999899999988999999999999999999999999999887543 4469998643

>KOG0905|consensus

Probab=98.37  E-value=2.5e-07  Score=80.90  Aligned_cols=73  Identities=25%  Similarity=0.395  Sum_probs=65.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~  157 (174)
                      |+||++.++|+||.|||.+++.+++.+.+..+.|.++||..+.+..+.++|.+.|+|.+....+ ...||.|..
T Consensus      1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            8899999999999999999999778888888999999999999999999999999999987764 459999853

>PLN02228 Phosphoinositide phospholipase C

Probab=98.35  E-value=6.3e-07  Score=74.52  Aligned_cols=69  Identities=23%  Similarity=0.337  Sum_probs=55.7

Q ss_pred             eEeceeecCCCCCcc-CceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w-~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      ++||+++.++.||.| ||+|.|. +...++.  .|+|.|+|+|..+.++++|...+++..+..  +...++|...
T Consensus       475 ~~rTk~~~n~~nP~W~~e~f~F~-~~~pELA--~lRf~V~D~d~~~~d~figq~~lPv~~Lr~--GYR~VpL~~~  544 (567)
T PLN02228        475 SYRTETAVDQWFPIWGNDEFLFQ-LRVPELA--LLWFKVQDYDNDTQNDFAGQTCLPLPELKS--GVRAVRLHDR  544 (567)
T ss_pred             cceeeccCCCCCceECCCeEEEE-EEcCcee--EEEEEEEeCCCCCCCCEEEEEEcchhHhhC--CeeEEEccCC
Confidence            578999988899999 9999998 7766654  799999999988899999999999987643  3334455443

>KOG1031|consensus

Probab=98.33  E-value=3.3e-07  Score=75.32  Aligned_cols=81  Identities=22%  Similarity=0.433  Sum_probs=67.4

Q ss_pred             CCccccccCCCCCccc-cEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-----------CcCce
Q psy6192          85 SNLSKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----------DEPEW  152 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wn-e~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-----------~~~~W  152 (174)
                      .+||.+-.+++||.|| +.|.|. +...+++++.|.|.+.|++..+.++-||.|.|+++-+...           -..+|
T Consensus        37 t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw  115 (1169)
T KOG1031|consen   37 TFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGW  115 (1169)
T ss_pred             ceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeee
Confidence            4789999999999999 799998 9999999999999999999999999999999999876432           12589


Q ss_pred             eeccc--CCCCCCCCc
Q psy6192         153 FYLTK--HKNSGSNPT  166 (174)
Q Consensus       153 ~~L~~--~~~~~~~~~  166 (174)
                      +++.+  .|=.|.+.+
T Consensus       116 ~pifdtihgirgeinv  131 (1169)
T KOG1031|consen  116 FPIFDTIHGIRGEINV  131 (1169)
T ss_pred             eecceecccccceeEE
Confidence            99887  343444433

>PLN02228 Phosphoinositide phospholipase C

Probab=98.27  E-value=1.3e-06  Score=72.77  Aligned_cols=68  Identities=25%  Similarity=0.365  Sum_probs=56.4

Q ss_pred             CCccccccCCCCCcc-ccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKW-NQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~w-ne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|++++++.||+| ||.|.|. +..+++.  -|.|.|+|.+..+.++|||+..|+++.+..  .-+..+|.+
T Consensus       475 ~~rTk~~~n~~nP~W~~e~f~F~-~~~pELA--~lRf~V~D~d~~~~d~figq~~lPv~~Lr~--GYR~VpL~~  543 (567)
T PLN02228        475 SYRTETAVDQWFPIWGNDEFLFQ-LRVPELA--LLWFKVQDYDNDTQNDFAGQTCLPLPELKS--GVRAVRLHD  543 (567)
T ss_pred             cceeeccCCCCCceECCCeEEEE-EEcCcee--EEEEEEEeCCCCCCCCEEEEEEcchhHhhC--CeeEEEccC
Confidence            578999888899999 9999999 8766654  789999999988899999999999998733  334567766

>KOG1264|consensus

Probab=98.22  E-value=1.8e-06  Score=73.34  Aligned_cols=61  Identities=15%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             CceEeceeecCCCCCccC-ceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           1 GFKEFAKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~-E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      +++++|.++.+.+||+|| |+|.|. +...++  ..|+|.|||.|.++...|||.+.+++..+..
T Consensus      1101 ~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe~--A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1101 NKFKTTVVNDNGLNPIWNPEKFTFE-IYNPEF--AFLRFVVYEEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             CceEEEEeccCCCCCCCCCcceEEE-eeCCce--EEEEEEEecccccCCcceeeeeecchhhhhc
Confidence            345677788999999999 999998 877665  4899999999999999999999999976543

>KOG2059|consensus

Probab=98.14  E-value=2.3e-06  Score=71.55  Aligned_cols=68  Identities=24%  Similarity=0.450  Sum_probs=60.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      ..+|.++.+++.|.|.|.|.|. ++..=   ..|.|-|||.+ +++|+.||.+.|.-.++... +.+.|+.|++
T Consensus        39 v~RT~tv~ksL~PF~gEe~~~~-iP~~F---~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~  107 (800)
T KOG2059|consen   39 VCRTATVEKSLCPFFGEEFYFE-IPRTF---RYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQP  107 (800)
T ss_pred             hhhhhhhhhhcCCccccceEEe-cCcce---eeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccc
Confidence            3789999999999999999998 77542   56999999999 99999999999998887655 6789999998

>PLN02270 phospholipase D alpha

Probab=98.03  E-value=9e-06  Score=69.82  Aligned_cols=69  Identities=20%  Similarity=0.421  Sum_probs=56.4

Q ss_pred             CccccccCC-CCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192          86 NLSKTLANT-NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t-~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~  159 (174)
                      .+|+++.+. .||+|||+|...   +.... ..+.|+|.|.+.++ ..+||.+.|++.++..+ ..++||++..+.
T Consensus        61 ~rtr~~~~~~~~p~w~e~f~i~---~ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~  131 (808)
T PLN02270         61 GRTRKIENEPKNPRWYESFHIY---CAHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND  131 (808)
T ss_pred             EEEeecCCCCCCCccccceEEe---eccCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC
Confidence            589999875 599999998855   44444 77999999988774 45999999999998877 578999998744

>KOG1326|consensus

Probab=97.97  E-value=1.6e-05  Score=68.91  Aligned_cols=142  Identities=17%  Similarity=0.280  Sum_probs=92.6

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCc-----CC-cceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEec
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSD-----LK-LRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~-----~~-~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      |+-+.|.++.+|+||.|+.+..|.++..-.     +. --.+.+++||.++.+.++++|...+...-....+...|+++.
T Consensus       237 ~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~  316 (1105)
T KOG1326|consen  237 GQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM  316 (1105)
T ss_pred             cccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEecCCccceEEee
Confidence            456789999999999999999997432210     00 135779999999999999999976665544444555677664


Q ss_pred             ccc---e-------------EeccCC-----------------------------------------------------C
Q psy6192          75 KHT---L-------------ELQFPL-----------------------------------------------------S   85 (174)
Q Consensus        75 ~~~---~-------------~l~~p~-----------------------------------------------------~   85 (174)
                      ..+   +             .+..|.                                                     .
T Consensus       317 rg~~l~gd~l~a~eliq~~~~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~  396 (1105)
T KOG1326|consen  317 RGAFLDGDVLIAAELIQIGKPIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGER  396 (1105)
T ss_pred             cccccccchhHHHHHHhhcCCCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCce
Confidence            321   0             011110                                                     1


Q ss_pred             Cccccc-cCCCCCccccEEEeCc--cccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCC
Q psy6192          86 NLSKTL-ANTNDPKWNQSFFYPG--IRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS  142 (174)
Q Consensus        86 ~kT~~~-~~t~~P~wne~~~f~~--~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~  142 (174)
                      -.+-.+ ....||.++..+.+-.  ++..++.-..+.++|.|.+.+++-..+|++.+.-.
T Consensus       397 v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l  456 (1105)
T KOG1326|consen  397 VSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSL  456 (1105)
T ss_pred             EeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhh
Confidence            112222 2335777776665541  34455555789999999999999999999877643

>KOG1031|consensus

Probab=97.94  E-value=5.7e-06  Score=68.23  Aligned_cols=61  Identities=23%  Similarity=0.452  Sum_probs=55.0

Q ss_pred             eEeceeecCCCCCccC-ceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           3 KEFAKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~-E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      ..+|.+..+++||.|| +-|.|+ +...++++..|.|.+.|+|.++.++-||++.+++..+-.
T Consensus        37 t~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~lld~dtysandaigkv~i~idpl~~   98 (1169)
T KOG1031|consen   37 TFKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCL   98 (1169)
T ss_pred             ceehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEecccccccccccceeeeccChHHH
Confidence            4688899999999999 578897 989999999999999999999999999999999987544

>KOG1011|consensus

Probab=97.85  E-value=2.2e-05  Score=65.65  Aligned_cols=73  Identities=22%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCc-CCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCc-eEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSD-LKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE-WFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~-~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~-w~~L~~   75 (174)
                      +|+.|+++.++..|.|||+|.|- +..+. .....|.+.|-||...+.|+.+|...+.|+++...+... |++|..
T Consensus      1163 RK~~TKtKsnnWaPKyNEtF~f~-Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1163 RKFSTKTKSNNWAPKYNETFHFF-LGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             hhccccccCCCcCcccCceeEEE-eccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            45669999999999999999997 65543 345779999999998889999999999999988766554 999954

>PLN02964 phosphatidylserine decarboxylase

Probab=97.79  E-value=3e-05  Score=65.70  Aligned_cols=97  Identities=16%  Similarity=0.291  Sum_probs=73.3

Q ss_pred             CCCCCceEEEEEEecccccCCCCCceEEecccceEeccCCCCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEe
Q psy6192          45 RYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWD  124 (174)
Q Consensus        45 ~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~~~l~~p~~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d  124 (174)
                      .++.+++-|-+.+.|-.....-...|+..---+-.     .+||...++|.||+|||...|. +.+.++.  ...+.|||
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~--~~~~~~~~  117 (644)
T PLN02964         46 AVSAEDFSGIALLTLVGAEMKFKDKWLACVSFGEQ-----TFRTETSDSTDKPVWNSEKKLL-LEKNGPH--LARISVFE  117 (644)
T ss_pred             ceecccccCeEEEEeehhhhccCCcEEEEEEecce-----eeeeccccccCCcccchhhceE-eccCCcc--eEEEEEEe
Confidence            34677888888888765444444557665322211     3799999999999999988887 7666655  35999999


Q ss_pred             CCCCCCCceeEEEEEeCCcCCCCCc
Q psy6192         125 YTRYGVNDFLGEVIIELSSSLCTDE  149 (174)
Q Consensus       125 ~~~~~~~~~iG~~~l~l~~~~~~~~  149 (174)
                      .+.++.++.+|.+.+++..+...+.
T Consensus       118 ~~~~s~n~lv~~~e~~~t~f~~kqi  142 (644)
T PLN02964        118 TNRLSKNTLVGYCELDLFDFVTQEP  142 (644)
T ss_pred             cCCCCHHHhhhheeecHhhccHHHH
Confidence            9999999999999999988766543

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.74  E-value=3.2e-05  Score=52.12  Aligned_cols=70  Identities=23%  Similarity=0.373  Sum_probs=54.4

Q ss_pred             CCccccccCCCCCccccEEEeCccc-------------cCCCCcceEEEEEEeCCCC----------CCCceeEEEEEeC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRY----------GVNDFLGEVIIEL  141 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~-------------~~~~~~~~l~i~v~d~~~~----------~~~~~iG~~~l~l  141 (174)
                      .++|++..++-.|.|+-.+.|. .+             .+-+....+.++||....-          .+|-.||.+.|++
T Consensus        49 ~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl  127 (143)
T cd08683          49 LRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPL  127 (143)
T ss_pred             eeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeH
Confidence            4789999999999999999998 44             1224557899999974322          2445799999999


Q ss_pred             CcCCCC--CcCceeec
Q psy6192         142 SSSLCT--DEPEWFYL  155 (174)
Q Consensus       142 ~~~~~~--~~~~W~~L  155 (174)
                      .++...  +.++||++
T Consensus       128 ~~Ll~~rsGitGW~pi  143 (143)
T cd08683         128 RDLLTKRSGITGWYPI  143 (143)
T ss_pred             HHHhhcccCccccccC
Confidence            998865  78999985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1264|consensus

Probab=97.73  E-value=3.4e-05  Score=65.87  Aligned_cols=59  Identities=15%  Similarity=0.343  Sum_probs=50.4

Q ss_pred             CccccccCCCCCccc-cEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192          86 NLSKTLANTNDPKWN-QSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT  147 (174)
Q Consensus        86 ~kT~~~~~t~~P~wn-e~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~  147 (174)
                      +.|.+..+.+||+|| |.|+|. +.++++.  -|++.|+|.|.++...|||++..++..+..+
T Consensus      1104 ~t~~V~dNGlnPiWn~e~ftFe-I~nPe~A--~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1104 KTTVVNDNGLNPIWNPEKFTFE-IYNPEFA--FLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             EEEEeccCCCCCCCCCcceEEE-eeCCceE--EEEEEEecccccCCcceeeeeecchhhhhcc
Confidence            345566788999999 999999 8887765  7899999999999888999999999987554

>KOG1013|consensus

Probab=97.68  E-value=3.6e-05  Score=59.39  Aligned_cols=79  Identities=22%  Similarity=0.347  Sum_probs=63.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecccceEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLELQ   81 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~~~l~   81 (174)
                      .|++|.+.++|++|.||+.|.|. +...++....+.|.+||++..+..+++|-+..-..                     
T Consensus       270 fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~---------------------  327 (362)
T KOG1013|consen  270 FKKKTQQKKKTLNPEFDEEFFYD-IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY---------------------  327 (362)
T ss_pred             hcccCcchhccCCcccccccccc-CCccchhcceEEEeecccCCCcCccCCCccccccc---------------------
Confidence            36789999999999999999998 99999988999999999998878888887654221                     


Q ss_pred             cCCCCccccccCCCCCccccEEEeC
Q psy6192          82 FPLSNLSKTLANTNDPKWNQSFFYP  106 (174)
Q Consensus        82 ~p~~~kT~~~~~t~~P~wne~~~f~  106 (174)
                          +++.+.+....|.|+..+.|.
T Consensus       328 ----rr~~v~~h~gr~~~~~~a~~~  348 (362)
T KOG1013|consen  328 ----RRGEVHKHWGRCLFDQDANFE  348 (362)
T ss_pred             ----ccchhhcCccccccccccccc
Confidence                456666666667777666655

>KOG2060|consensus

Probab=97.55  E-value=5e-05  Score=59.54  Aligned_cols=73  Identities=23%  Similarity=0.357  Sum_probs=60.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEE-eCCCCCCCceeEEEEEeCCcCCCCC--cCceeecccCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTKHKNS  161 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~-d~~~~~~~~~iG~~~l~l~~~~~~~--~~~W~~L~~~~~~  161 (174)
                      +.+|+..++|+.|.|-....|. -+   .....|.++|| |+....++.|+|.+++-++++....  ...||+|.+....
T Consensus       308 k~ktk~A~kT~~plyqq~l~f~-~s---p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl  383 (405)
T KOG2060|consen  308 KKKTKSARKTLDPLYQQQLSFD-QS---PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL  383 (405)
T ss_pred             ccccccccccCchhhhhhhhhc-cC---CCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence            7889999999999999999988 33   34578999999 5777788899999999999987764  5699999885443

>PLN02270 phospholipase D alpha

Probab=97.47  E-value=0.00024  Score=61.37  Aligned_cols=68  Identities=22%  Similarity=0.416  Sum_probs=53.8

Q ss_pred             EeceeecCC-CCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192           4 EFAKTLANT-NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH   76 (174)
Q Consensus         4 ~rT~~~~~t-~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~   76 (174)
                      -||.++.+. .||.|+|.|... +....   ..+.|.|-|.+.++. .+||.+.++..++..... ..|+++...
T Consensus        61 ~rtr~~~~~~~~p~w~e~f~i~-~ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~  130 (808)
T PLN02270         61 GRTRKIENEPKNPRWYESFHIY-CAHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDN  130 (808)
T ss_pred             EEEeecCCCCCCCccccceEEe-eccCc---ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCC
Confidence            389999875 599999998776 54443   569999999999887 599999999998776544 449998653

>PLN02964 phosphatidylserine decarboxylase

Probab=97.41  E-value=7.2e-05  Score=63.45  Aligned_cols=60  Identities=18%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      +-+||++.++|+||+|||.-.|. +....+.  ..+|.|||.+.++.++++|.+++++..+..
T Consensus        80 ~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964         80 QTFRTETSDSTDKPVWNSEKKLL-LEKNGPH--LARISVFETNRLSKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             eeeeeccccccCCcccchhhceE-eccCCcc--eEEEEEEecCCCCHHHhhhheeecHhhccH
Confidence            34799999999999999988886 6666654  469999999999999999999997755443

>PLN02352 phospholipase D epsilon

Probab=97.30  E-value=0.00038  Score=59.91  Aligned_cols=60  Identities=22%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             cCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-C-cCceeecccCC
Q psy6192          92 ANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-D-EPEWFYLTKHK  159 (174)
Q Consensus        92 ~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~-~~~W~~L~~~~  159 (174)
                      .+..||+|||+|...   +....+..+.|+|.|     ...+||.+.|++.++..+ . .++|+++..+.
T Consensus        53 ~~~~~p~w~e~f~i~---~ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~  114 (758)
T PLN02352         53 SHEYDRVWNQTFQIL---CAHPLDSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN  114 (758)
T ss_pred             CCCCCCccccceeEE---eeeecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC
Confidence            455699999998855   444444579999988     356899999999998877 4 68999998744

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.25  E-value=0.00046  Score=46.61  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=52.3

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcC-------------cCcCCcceEEEEEEeCCCCC----------CCceEEEEEE
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIR-------------RSDLKLRSIEITVWDYTRYG----------VNDFLGEVII   57 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~-------------~~~~~~~~L~i~v~d~~~~~----------~~~~lG~~~~   57 (174)
                      +.+++|+++.++-+|.|+-.+.|. ++             .+.+....+.++||+...-+          .|-.||.+.+
T Consensus        47 ~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~I  125 (143)
T cd08683          47 KELRRTRTVARSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKI  125 (143)
T ss_pred             CceeeccchhhhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEe
Confidence            356789999999999999988886 43             12334456889999976432          3457999999


Q ss_pred             ecccccCC--CCCceEEe
Q psy6192          58 ELSSSLCT--DEPEWFYL   73 (174)
Q Consensus        58 ~l~~~~~~--~~~~w~~L   73 (174)
                      ++.++...  +...||++
T Consensus       126 Pl~~Ll~~rsGitGW~pi  143 (143)
T cd08683         126 PLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             eHHHHhhcccCccccccC
Confidence            99987643  23448874

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=96.98  E-value=0.00064  Score=44.40  Aligned_cols=52  Identities=23%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL  145 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~  145 (174)
                      +.+|++   +.||.|||.|.|+ +.    ....+++.|||...- ..-.||-.-|.++++.
T Consensus        36 kaRTr~---srnd~WnE~F~i~-Vd----k~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~   87 (109)
T cd08689          36 RARTKP---SRNDRWNEDFEIP-VE----KNNEEEVIVYDKGGD-QPVPVGLLWLRLSDIA   87 (109)
T ss_pred             EEeccC---CCCCcccceEEEE-ec----CCcEEEEEEEeCCCC-eecceeeehhhHHHHH
Confidence            356766   5899999999998 63    247899999997542 3346888888888764

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=96.96  E-value=0.001  Score=43.47  Aligned_cols=52  Identities=21%  Similarity=0.340  Sum_probs=37.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL   63 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~   63 (174)
                      +.||++   +.||.|||+|.|+ +  +.  ...+.+.|||...- ..-.+|..-+.++++.
T Consensus        36 kaRTr~---srnd~WnE~F~i~-V--dk--~nEiel~VyDk~~~-~~~Pi~llW~~~sdi~   87 (109)
T cd08689          36 RARTKP---SRNDRWNEDFEIP-V--EK--NNEEEVIVYDKGGD-QPVPVGLLWLRLSDIA   87 (109)
T ss_pred             EEeccC---CCCCcccceEEEE-e--cC--CcEEEEEEEeCCCC-eecceeeehhhHHHHH
Confidence            445655   4799999999998 6  32  45799999998642 3457888877776654

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.78  E-value=0.0044  Score=43.83  Aligned_cols=57  Identities=26%  Similarity=0.415  Sum_probs=46.2

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCCCCceEEEEEEecccc
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYGVNDFLGEVIIELSSS   62 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~~~~~lG~~~~~l~~~   62 (174)
                      +|+.+.-+..+.|||-+.|+ +...++.. ..|.|.||+++..+....+|.+.++|-+.
T Consensus        50 ~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          50 QTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             EccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            55556556678999999999 88887764 67999999998766778999999998654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.62  E-value=0.006  Score=43.14  Aligned_cols=57  Identities=26%  Similarity=0.440  Sum_probs=43.7

Q ss_pred             ccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCcC
Q psy6192          87 LSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSS  144 (174)
Q Consensus        87 kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~  144 (174)
                      .|+.+.-+..+.|||.+.|+ +...++ .++.|.|+|||....+....||.+.+.+-+-
T Consensus        50 ~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          50 QTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             EccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            44444444668899999999 876665 4478999999987655667899999999774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.92  E-value=0.023  Score=39.88  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=42.3

Q ss_pred             ceeecCCCCCccCceEEcCCcCcCcCC-cceEEEEEEeCCCCC--CCceEEEEEEecccc
Q psy6192           6 AKTLANTNDPKWNQSFFYPGIRRSDLK-LRSIEITVWDYTRYG--VNDFLGEVIIELSSS   62 (174)
Q Consensus         6 T~~~~~t~nP~w~E~f~f~~v~~~~~~-~~~L~i~v~d~~~~~--~~~~lG~~~~~l~~~   62 (174)
                      |.......++.|||.+.|+ +...++. ...|.|.+|+.+..+  ....||.+.++|-+.
T Consensus        49 t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          49 TKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence            3333334689999999998 7776665 367899999987654  468999999998653

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1265|consensus

Probab=95.82  E-value=0.028  Score=49.21  Aligned_cols=55  Identities=20%  Similarity=0.454  Sum_probs=41.4

Q ss_pred             Cccccc-cCCCCCcccc-EEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC
Q psy6192          86 NLSKTL-ANTNDPKWNQ-SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC  146 (174)
Q Consensus        86 ~kT~~~-~~t~~P~wne-~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~  146 (174)
                      ++|++. .++.||+|+| .|+|..|-.+++.  .|.|.||+.+    +.+||+=.++++.+..
T Consensus       740 ~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiavyeEg----gK~ig~RIlpvd~l~~  796 (1189)
T KOG1265|consen  740 FRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAVYEEG----GKFIGQRILPVDGLNA  796 (1189)
T ss_pred             hhhccccCCCCCcccccCCcccceecccchh--heeeeeeccC----CceeeeeccchhcccC
Confidence            566654 4679999994 8999855555554  8999999854    4599999999987643

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.79  E-value=0.016  Score=40.05  Aligned_cols=57  Identities=23%  Similarity=0.291  Sum_probs=42.7

Q ss_pred             eceeecCC-CCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCCCC----ceEEEEEEecccc
Q psy6192           5 FAKTLANT-NDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYGVN----DFLGEVIIELSSS   62 (174)
Q Consensus         5 rT~~~~~t-~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~~~----~~lG~~~~~l~~~   62 (174)
                      .|+...-+ .++.|||.+.|+ +...++.. ..|.|.||..+.....    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            56666555 799999999998 87777764 6788999998876555    6999999998654

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.74  E-value=0.018  Score=39.79  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=42.2

Q ss_pred             ccccccCC-CCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCC----ceeEEEEEeCCcC
Q psy6192          87 LSKTLANT-NDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVN----DFLGEVIIELSSS  144 (174)
Q Consensus        87 kT~~~~~t-~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~----~~iG~~~l~l~~~  144 (174)
                      .|+....+ .++.|||.+.|+ +...++ .+..|.|+||........    ..||.+.+.+-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            45545444 789999999999 876554 447799999987765554    6899999999875

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.72  E-value=0.064  Score=37.88  Aligned_cols=49  Identities=20%  Similarity=0.246  Sum_probs=37.4

Q ss_pred             CCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC----CCceeEEEEEeCCcC
Q psy6192          95 NDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG----VNDFLGEVIIELSSS  144 (174)
Q Consensus        95 ~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~----~~~~iG~~~l~l~~~  144 (174)
                      .++.|||.+.|+ +...++ .++.|.|++|+.....    ....||.+.+.|-+-
T Consensus        53 ~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          53 SNPRWNEWLDYD-IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             CCCccceeEEcc-cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence            579999999999 876665 4478999999975422    124699999999774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG1327|consensus

Probab=95.59  E-value=0.014  Score=48.37  Aligned_cols=60  Identities=25%  Similarity=0.376  Sum_probs=44.7

Q ss_pred             EeceeecCCCCCccCceEEc-CCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           4 EFAKTLANTNDPKWNQSFFY-PGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f-~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      ++|.++++++||.|.+...- ..+...+. ...+.+.+||++..+.+++||++..++..+..
T Consensus       176 ~~tEv~~n~l~p~w~~~~i~~~~l~~~~~-~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  176 YRTEVVKNTLNPQWAPFSISLQSLCSKDG-NRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             cccceeccCCCCcccccccchhhhcccCC-CCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            58999999999999973211 10111111 36788999999999999999999988887653

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.50  E-value=0.038  Score=39.90  Aligned_cols=58  Identities=12%  Similarity=0.171  Sum_probs=38.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCC---ceeEEEEEeCCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVN---DFLGEVIIELSS  143 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~---~~iG~~~l~l~~  143 (174)
                      ...|.+...+.+|.|+|.|-.+ ++.....+.-|.|++++...-.+.   ..+|.+.++|.+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            3678888888999999999998 998888888999999987643322   689999999987

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.50  E-value=0.036  Score=38.87  Aligned_cols=51  Identities=22%  Similarity=0.301  Sum_probs=39.6

Q ss_pred             CCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC--CCceeEEEEEeCCcCC
Q psy6192          94 TNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG--VNDFLGEVIIELSSSL  145 (174)
Q Consensus        94 t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~--~~~~iG~~~l~l~~~~  145 (174)
                      ..++.|||.+.|+ +...++ .+..|.|++|+.....  ....||.+.+.+-+..
T Consensus        55 ~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          55 STSVTWNEWLTFD-ILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             CCCCcccceeEcc-chhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEccc
Confidence            3679999999999 765554 4478999999976543  4578999999998743

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.38  E-value=0.057  Score=39.17  Aligned_cols=55  Identities=16%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC--CCceEEEEEEec
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIEL   59 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~--~~~~lG~~~~~l   59 (174)
                      .+|.+...+.+|.|+|++... ++.+......|.|..++...-.  ....+|.+-++|
T Consensus        55 ~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL  111 (189)
T cd08695          55 YRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL  111 (189)
T ss_pred             EEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence            578888888899999999998 9999998899999888755322  125688887777

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.38  E-value=0.054  Score=38.84  Aligned_cols=57  Identities=16%  Similarity=0.302  Sum_probs=42.4

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCC----------------CCceEEEEEEecccc
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYG----------------VNDFLGEVIIELSSS   62 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~----------------~~~~lG~~~~~l~~~   62 (174)
                      .|+.+.-+.++.|||.+.|+ +...++.. ..|.|.||+....+                ....||.+.+.|-+.
T Consensus        47 ~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          47 KTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             EccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            45555555679999999998 88877764 67889999976432                146899998888653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.32  E-value=0.041  Score=39.90  Aligned_cols=57  Identities=18%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC--CceeEEEEEeCCc
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSS  143 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~--~~~iG~~~l~l~~  143 (174)
                      ++|.+...+.+|.|+|++-.. ++.+.....-|.++++....-.+  ...+|...++|-.
T Consensus        55 ~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          55 YRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             EEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            688899999999999999998 99998888999998887543321  2578988888854

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.16  E-value=0.061  Score=42.67  Aligned_cols=71  Identities=20%  Similarity=0.461  Sum_probs=54.4

Q ss_pred             ccccccCCCCCccccEEEeCcccc-----CCCCcceEEEEEEeCC-CCCCCceeEEEEEeCCcC---CCC---CcCceee
Q psy6192          87 LSKTLANTNDPKWNQSFFYPGIRR-----SDLKLRSIEITVWDYT-RYGVNDFLGEVIIELSSS---LCT---DEPEWFY  154 (174)
Q Consensus        87 kT~~~~~t~~P~wne~~~f~~~~~-----~~~~~~~l~i~v~d~~-~~~~~~~iG~~~l~l~~~---~~~---~~~~W~~  154 (174)
                      .|-....+..|.||-.+.+. +..     ..++...|.+++|..+ ..+..+.||++.|+|.+.   ..+   ....||+
T Consensus        32 ~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~  110 (340)
T PF12416_consen   32 ETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYK  110 (340)
T ss_pred             eecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeE
Confidence            45566678889999888887 432     2345578999999887 556788999999999998   444   4569999


Q ss_pred             cccC
Q psy6192         155 LTKH  158 (174)
Q Consensus       155 L~~~  158 (174)
                      |.+-
T Consensus       111 LL~~  114 (340)
T PF12416_consen  111 LLSS  114 (340)
T ss_pred             cccc
Confidence            9884

>PLN02352 phospholipase D epsilon

Probab=95.10  E-value=0.041  Score=47.81  Aligned_cols=59  Identities=22%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             cCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEeccc
Q psy6192          10 ANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTKH   76 (174)
Q Consensus        10 ~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~~~   76 (174)
                      .+.-||.|+|.|... +....  ...+.|.|-|     .-.+||.+.++..++....  ...|+++...
T Consensus        53 ~~~~~p~w~e~f~i~-~ah~~--~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~  113 (758)
T PLN02352         53 SHEYDRVWNQTFQIL-CAHPL--DSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIME  113 (758)
T ss_pred             CCCCCCccccceeEE-eeeec--CCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccC
Confidence            455699999988776 44333  2458899977     2579999999999887653  3459998654

>KOG3837|consensus

Probab=95.06  E-value=0.028  Score=45.18  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCC---------CCcceEEEEEEeCCCC-CCCceeEEEEEeCCcCCCC-CcCcee
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSD---------LKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCT-DEPEWF  153 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~---------~~~~~l~i~v~d~~~~-~~~~~iG~~~l~l~~~~~~-~~~~W~  153 (174)
                      +.||.+++.|.+|.|+|.|-.. +....         .....+.|++|....+ ++|.++|.+.+.+.-+... ..+..+
T Consensus       405 k~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~  483 (523)
T KOG3837|consen  405 KLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYL  483 (523)
T ss_pred             cCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhce
Confidence            6789999999999999999987 64311         1235688999987654 6788999999999876655 556778


Q ss_pred             ecccCC
Q psy6192         154 YLTKHK  159 (174)
Q Consensus       154 ~L~~~~  159 (174)
                      +|.++.
T Consensus       484 ~l~DGR  489 (523)
T KOG3837|consen  484 PLKDGR  489 (523)
T ss_pred             eccccc
Confidence            887743

>KOG3837|consensus

Probab=95.00  E-value=0.029  Score=45.13  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCc---------CCcceEEEEEEeCCCC-CCCceEEEEEEecccccCC-CCCce
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSD---------LKLRSIEITVWDYTRY-GVNDFLGEVIIELSSSLCT-DEPEW   70 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~---------~~~~~L~i~v~d~~~~-~~~~~lG~~~~~l~~~~~~-~~~~w   70 (174)
                      ++.+|.+++.|.+|.|+|.|... +....         ..+..+.|++|+...+ ++|.++|.+.+.|..+... ..++.
T Consensus       404 qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~  482 (523)
T KOG3837|consen  404 QKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEY  482 (523)
T ss_pred             ccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhc
Confidence            56789999999999999988775 43311         1124588999997765 6789999999999876543 23446


Q ss_pred             EEeccc
Q psy6192          71 FYLTKH   76 (174)
Q Consensus        71 ~~L~~~   76 (174)
                      ++|.+.
T Consensus       483 ~~l~DG  488 (523)
T KOG3837|consen  483 LPLKDG  488 (523)
T ss_pred             eecccc
Confidence            666543

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.83  E-value=0.12  Score=37.69  Aligned_cols=55  Identities=16%  Similarity=0.227  Sum_probs=43.2

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-C---CCceEEEEEEec
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-G---VNDFLGEVIIEL   59 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-~---~~~~lG~~~~~l   59 (174)
                      .+|.+...+.+|.|+|++... ++.+......|.|.+++...- .   ....+|.+-++|
T Consensus        55 ~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL  113 (196)
T cd08694          55 YKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL  113 (196)
T ss_pred             EEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence            577787888899999999998 999999889999999876532 1   124677777776

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.76  E-value=0.1  Score=37.37  Aligned_cols=57  Identities=16%  Similarity=0.363  Sum_probs=40.8

Q ss_pred             ccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC----------------CCceeEEEEEeCCcC
Q psy6192          87 LSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG----------------VNDFLGEVIIELSSS  144 (174)
Q Consensus        87 kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~----------------~~~~iG~~~l~l~~~  144 (174)
                      .|+...-+..+.|||.+.|+ +...++ .+..|.|+||+.....                ....||.+.+.+-+.
T Consensus        47 ~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          47 KTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             EccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            34443334669999999999 876665 4477999999865322                135899999998774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.74  E-value=0.08  Score=38.58  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC-C---CceeEEEEEeCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-V---NDFLGEVIIELS  142 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~-~---~~~iG~~~l~l~  142 (174)
                      ++|-+...+.+|.|+|++-.. ++.+...+.-|.++++...... +   ...+|...++|-
T Consensus        55 ~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          55 YKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             EEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            688888889999999999998 9999888899999998765321 1   246898888885

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.71  E-value=0.11  Score=36.63  Aligned_cols=56  Identities=18%  Similarity=0.190  Sum_probs=41.0

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCC----CCceEEEEEEecccc
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYG----VNDFLGEVIIELSSS   62 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~----~~~~lG~~~~~l~~~   62 (174)
                      .|+.+.. .++.|||.+.|+ +...++.. ..|.|.+|+...-+    ....+|.+.+.|-+.
T Consensus        46 ~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          46 NTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             EecccCC-CCCccceeEEcc-cchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence            3444443 579999999998 88877764 67999999976422    235799999988653

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.59  E-value=0.12  Score=37.16  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCCC----------------CCceEEEEEEeccc
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRYG----------------VNDFLGEVIIELSS   61 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~~----------------~~~~lG~~~~~l~~   61 (174)
                      +|..+.-+.+|.|||.+.|+ +...++.. ..|.|.||+....+                .+..||.+.+.|-+
T Consensus        49 ~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          49 RTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             eeeccCCCCCccccccEECc-cccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEc
Confidence            56666666789999999998 88877764 67999999974321                24567777777654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=94.54  E-value=0.1  Score=37.64  Aligned_cols=57  Identities=9%  Similarity=0.178  Sum_probs=37.3

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC-C--ceEEEEEEeccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV-N--DFLGEVIIELSS   61 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~-~--~~lG~~~~~l~~   61 (174)
                      ..|.+..++.+|.|+|+|..+ ++.+......|.|.+++...-.. .  ..+|.+.++|-.
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            467777788899999999998 88888778889999998664321 1  689999999976

>KOG1265|consensus

Probab=94.46  E-value=0.03  Score=48.97  Aligned_cols=57  Identities=19%  Similarity=0.410  Sum_probs=44.1

Q ss_pred             ceEeceee-cCCCCCccCc-eEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           2 FKEFAKTL-ANTNDPKWNQ-SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         2 ~k~rT~~~-~~t~nP~w~E-~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      ++.||+++ -++.||+|+| .|+|..|-..++.  .|+|.||+..    ..+||.=.+++..+..
T Consensus       738 k~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiavyeEg----gK~ig~RIlpvd~l~~  796 (1189)
T KOG1265|consen  738 KEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAVYEEG----GKFIGQRILPVDGLNA  796 (1189)
T ss_pred             hhhhhccccCCCCCcccccCCcccceecccchh--heeeeeeccC----CceeeeeccchhcccC
Confidence            45678877 4788999996 7899877777765  6999999877    3689988888876543

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.06  E-value=0.15  Score=36.77  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=40.4

Q ss_pred             ccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC----------------CCceeEEEEEeCCcC
Q psy6192          87 LSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG----------------VNDFLGEVIIELSSS  144 (174)
Q Consensus        87 kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~----------------~~~~iG~~~l~l~~~  144 (174)
                      +|+.+.-+.+|.|||.+.|+ +...++ .+..|.|+||+.....                .+..||.+.+.|-+-
T Consensus        49 ~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          49 RTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             eeeccCCCCCccccccEECc-cccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcC
Confidence            45555455679999999999 876665 4478999999863211                134688888888763

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=93.82  E-value=0.15  Score=35.78  Aligned_cols=64  Identities=19%  Similarity=0.429  Sum_probs=47.0

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCC-----------cceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLK-----------LRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT   65 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~-----------~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~   65 (174)
                      ||+++|+.+..+.+|.|+|.|-|+ +..+...           ...+.+.|.-.+..+...++|+-.++-..+...
T Consensus        44 ~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s  118 (156)
T PF15627_consen   44 GQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS  118 (156)
T ss_pred             CceEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence            578899999999999999999998 6655421           134667776667666667888877776655443

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=93.45  E-value=0.27  Score=35.31  Aligned_cols=55  Identities=9%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             cccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC-----CCCceeEEEEEeCCc
Q psy6192          88 SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----GVNDFLGEVIIELSS  143 (174)
Q Consensus        88 T~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~-----~~~~~iG~~~l~l~~  143 (174)
                      +.+.....+|.|+|.+-.. +|.......-|.+++++...-     .....+|.+.++|-+
T Consensus        56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            3344444899999999998 887766778899999986633     235689999999975

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.88  E-value=0.27  Score=35.11  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=37.6

Q ss_pred             CCCccccEEEeCccccCCC-CcceEEEEEEeCCCCC---------CCceeEEEEEeCCcC
Q psy6192          95 NDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYG---------VNDFLGEVIIELSSS  144 (174)
Q Consensus        95 ~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~---------~~~~iG~~~l~l~~~  144 (174)
                      ..+.|||.+.|+ +...++ .+..|.|++|+.....         ....||.+.+.|-+.
T Consensus        61 ~~~~Wnewl~F~-i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          61 PRVVWDEWIEFP-IPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             ccccccceEECc-cchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            358899999999 765554 4478999999876543         346899999999774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=92.83  E-value=0.58  Score=33.61  Aligned_cols=55  Identities=9%  Similarity=0.125  Sum_probs=41.8

Q ss_pred             ceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-----CCCceEEEEEEeccc
Q psy6192           6 AKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----GVNDFLGEVIIELSS   61 (174)
Q Consensus         6 T~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-----~~~~~lG~~~~~l~~   61 (174)
                      |.++....+|.|+|+|... ++.+......|.|.+++...-     .....+|.+-++|-+
T Consensus        56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            4444444899999999998 877776778899999986632     335789998888854

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.75  E-value=0.26  Score=35.16  Aligned_cols=48  Identities=21%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             CCccCceEEcCCcCcCcCC-cceEEEEEEeCCCCC---------CCceEEEEEEecccc
Q psy6192          14 DPKWNQSFFYPGIRRSDLK-LRSIEITVWDYTRYG---------VNDFLGEVIIELSSS   62 (174)
Q Consensus        14 nP~w~E~f~f~~v~~~~~~-~~~L~i~v~d~~~~~---------~~~~lG~~~~~l~~~   62 (174)
                      .+.|||.+.|+ +...++. ...|.|.+|+....+         ....||.+.+.|-+.
T Consensus        62 ~~~Wnewl~F~-i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          62 RVVWDEWIEFP-IPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             cccccceEECc-cchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            57799999998 7776665 367999999987654         357899999988653

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=92.38  E-value=0.43  Score=34.41  Aligned_cols=58  Identities=7%  Similarity=0.065  Sum_probs=46.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC------CceeEEEEEeCCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV------NDFLGEVIIELSS  143 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~------~~~iG~~~l~l~~  143 (174)
                      ...|.+...+.+|.|+|.+-.. +|.......-|.++.++.+.-.+      ...+|...++|-.
T Consensus        55 ~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          55 EAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            3678888899999999999998 88887777889999998654322      2468988888854

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=91.09  E-value=1.1  Score=32.23  Aligned_cols=56  Identities=9%  Similarity=0.124  Sum_probs=42.9

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC------CCceEEEEEEecc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG------VNDFLGEVIIELS   60 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~------~~~~lG~~~~~l~   60 (174)
                      ..|.+...+.+|.|+|++-.. ++.......-|.|+.++.+--.      ....+|.+-++|-
T Consensus        56 ~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~  117 (179)
T cd08696          56 AYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL  117 (179)
T ss_pred             EEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence            467888888899999999987 8888877788999998854321      1356888777774

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.86  E-value=1.3  Score=32.14  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=42.6

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC--C-------CCceEEEEEEecc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--G-------VNDFLGEVIIELS   60 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~--~-------~~~~lG~~~~~l~   60 (174)
                      ..|.+...+.+|.|.|++-.. ++.......-|.|..|+.+--  .       ....+|.+-++|-
T Consensus        58 ~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl  122 (185)
T cd08697          58 AYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL  122 (185)
T ss_pred             EEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence            467788888999999999987 888888888899999986521  1       1245777766664

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=90.40  E-value=0.71  Score=36.72  Aligned_cols=73  Identities=19%  Similarity=0.428  Sum_probs=53.6

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcC-----cCCcceEEEEEEeCC-CCCCCceEEEEEEecccc---cCC---CCCce
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRS-----DLKLRSIEITVWDYT-RYGVNDFLGEVIIELSSS---LCT---DEPEW   70 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~-----~~~~~~L~i~v~d~~-~~~~~~~lG~~~~~l~~~---~~~---~~~~w   70 (174)
                      ..-|-.+..+-.|.||-.+.++ +...     .+++..|++.+|-.+ .-+..+.+|.+.++|..+   ...   ....|
T Consensus        30 ~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W  108 (340)
T PF12416_consen   30 SLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKW  108 (340)
T ss_pred             eeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCe
Confidence            3456667788899999988886 4332     233466889999988 557789999999999987   333   34459


Q ss_pred             EEeccc
Q psy6192          71 FYLTKH   76 (174)
Q Consensus        71 ~~L~~~   76 (174)
                      |+|.+.
T Consensus       109 ~~LL~~  114 (340)
T PF12416_consen  109 YKLLSS  114 (340)
T ss_pred             eEcccc
Confidence            998754

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=90.16  E-value=0.59  Score=30.20  Aligned_cols=40  Identities=25%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             eceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCC
Q psy6192           5 FAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTR   45 (174)
Q Consensus         5 rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~   45 (174)
                      .|+.+.-...+.|||-+.|+ +...++.. ..|.|.+|+...
T Consensus        52 ~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       52 STSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             EecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEeeC
Confidence            45555555568999999998 88877764 678899998653

Outlier of C2 family.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=90.09  E-value=0.49  Score=30.59  Aligned_cols=38  Identities=26%  Similarity=0.447  Sum_probs=27.5

Q ss_pred             cccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCC
Q psy6192          88 SKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYT  126 (174)
Q Consensus        88 T~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~  126 (174)
                      |+.+.-...+.|||.+.|+ +...++ .+..|.|++|+..
T Consensus        53 t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       53 TSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVK   91 (100)
T ss_pred             ecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEee
Confidence            3333334558999999999 876665 4478999999864

Outlier of C2 family.

>KOG2060|consensus

Probab=89.76  E-value=0.092  Score=41.75  Aligned_cols=71  Identities=24%  Similarity=0.377  Sum_probs=54.9

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEe-CCCCCCCceEEEEEEecccccCCC--CCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWD-YTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d-~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~~~~   77 (174)
                      |++|+...+|++|-|.....|.    +......|.+.+|- +.+.-++.|+|.+++-+.++....  ...||+|.+..
T Consensus       308 k~ktk~A~kT~~plyqq~l~f~----~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  308 KKKTKSARKTLDPLYQQQLSFD----QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccccccccccCchhhhhhhhhc----cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence            5789999999999999888876    23345779998874 666667889999999999887665  34599996543

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=89.69  E-value=1.3  Score=31.25  Aligned_cols=64  Identities=19%  Similarity=0.408  Sum_probs=47.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCC-----------CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDL-----------KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE  149 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~-----------~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~  149 (174)
                      +++|+.+..+.+|.|+|.|-|. +.....           ....+.+-|.-.+..+...++|.-.++.......+.
T Consensus        46 RF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~  120 (156)
T PF15627_consen   46 RFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN  120 (156)
T ss_pred             eEecCCcccccCCCCCCcEEEE-ecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence            5789999999999999999998 764431           115566777666666666889998888887766643

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.34  E-value=1.3  Score=32.15  Aligned_cols=58  Identities=12%  Similarity=0.150  Sum_probs=45.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC--C-------CCceeEEEEEeCCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--G-------VNDFLGEVIIELSS  143 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~--~-------~~~~iG~~~l~l~~  143 (174)
                      ...|.+...+.+|.|+|.+-.. +|.......-|.++.++.+..  .       ....+|...++|-.
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            3678888899999999999998 888877778899999986522  1       12468988888864

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=85.54  E-value=0.9  Score=31.06  Aligned_cols=52  Identities=21%  Similarity=0.500  Sum_probs=37.0

Q ss_pred             CCCccCceEEcCCcCc------CcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC
Q psy6192          13 NDPKWNQSFFYPGIRR------SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT   65 (174)
Q Consensus        13 ~nP~w~E~f~f~~v~~------~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~   65 (174)
                      -.-.|||+|.+. +..      ..+....+.|.|+....-++...+|.+.++|+++...
T Consensus        50 ~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   50 GKVQWNEEFSFP-CTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             cEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence            346799998776 322      2245567889998875434447999999999987754

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG0906|consensus

Probab=83.63  E-value=3.7  Score=35.44  Aligned_cols=45  Identities=29%  Similarity=0.580  Sum_probs=36.7

Q ss_pred             ccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCc
Q psy6192          98 KWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSS  143 (174)
Q Consensus        98 ~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~  143 (174)
                      .|||.+.++ +..+++ .++.+.|++||......-.|+|...+.+..
T Consensus        78 ~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~  123 (843)
T KOG0906|consen   78 NWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG  123 (843)
T ss_pred             chhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence            499999998 866665 447799999998877788899998887765

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=80.43  E-value=2  Score=29.25  Aligned_cols=53  Identities=21%  Similarity=0.494  Sum_probs=38.0

Q ss_pred             CCCCccccEEEeCcccc------CCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC
Q psy6192          94 TNDPKWNQSFFYPGIRR------SDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT  147 (174)
Q Consensus        94 t~~P~wne~~~f~~~~~------~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~  147 (174)
                      +..-.|||.|.+. +..      ..+....+.|.|+....-++...+|.+.|+|.+....
T Consensus        49 ~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   49 NGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             ccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence            4557999999987 421      2256677889998764333336899999999997764

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		7e-14
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		5e-13
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		6e-13
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-12
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-11
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		4e-07
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		4e-07
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		9e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-04
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		1e-04
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-04
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		1e-04
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		1e-04
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		1e-04
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		1e-04
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		1e-04
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		1e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		7e-04
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		6e-04
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		7e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		8e-04

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELSSSL 145
           +KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L
Sbjct: 62  TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 121
Query: 146 CTDEPEWFYLTKHKNSGSN 164
             DEP W+ L  H +  S+
Sbjct: 122 LDDEPHWYKLQTHDSGPSS 140

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELS 60
           K   KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL 
Sbjct: 56  KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 115
Query: 61  SSLCTDEPEWFYL 73
           ++L  DEP W+ L
Sbjct: 116 TALLDDEPHWYKL 128

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELSSSL 145
           +KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L
Sbjct: 59  TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118
Query: 146 CTDEPEWFYL 155
             DEP W+ L
Sbjct: 119 LDDEPHWYKL 128

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 2   FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
           +K   K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS
Sbjct: 64  YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Query: 62  SLCTDE-PEWFYLTKHT 77
           +   D  P W+ L + T
Sbjct: 124 TSHLDNTPRWYPLKEQT 140

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS+   
Sbjct: 68  TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127
Query: 148 DE-PEWFYLTKHKNS 161
           D  P W+ L +   S
Sbjct: 128 DNTPRWYPLKEQTES 142

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIEL 141
           +KTL NT +P WN++  Y GI   D++ +++ I+V D  ++G N+F+GE    L
Sbjct: 68  TKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 121

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIEL 141
           +KTL NT +P WN++  Y GI   D++ +++ I+V D  ++G N+F+GE    L
Sbjct: 70  TKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K+  KT+ +T +P+WN+SF +  ++ SD K R + + +WD+ R   NDF+G +   +S  
Sbjct: 55  KQKTKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
Query: 63  LCTDEPEWFYL 73
           +      W+ L
Sbjct: 113 MKMPASGWYKL 123

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+ +T +P+WN+SF +  ++ SD K R + + +WD+ R   NDF+G +   +S  +  
Sbjct: 58  TKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 115
Query: 148 DEPEWFYL 155
               W+ L
Sbjct: 116 PASGWYKL 123

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K+  KT+ +T +P+WN+SF +  ++ SD K R + + +WD+ R   NDF+G +   +S  
Sbjct: 54  KQKTKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
Query: 63  LCTDEPEWFYL 73
           +      W+ L
Sbjct: 112 MKMPASGWYKL 122

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+ +T +P+WN+SF +  ++ SD K R + + +WD+ R   NDF+G +   +S  +  
Sbjct: 57  TKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 114
Query: 148 DEPEWFYL 155
               W+ L
Sbjct: 115 PASGWYKL 122

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
           T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+
Sbjct: 84  TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 94  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
           T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+
Sbjct: 84  TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
           T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+
Sbjct: 62  TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 94  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
           T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+
Sbjct: 62  TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 110

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 61
           T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+
Sbjct: 84  TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 94  TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS 143
           T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+
Sbjct: 84  TLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA 132

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K+  KT+ ++ +P+WN++F +  ++ SD K R + + +WD+     NDF+G +   +S  
Sbjct: 210 KQKTKTIKSSLNPEWNETFRFQ-LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
Query: 63  LCTDEPEWFYL 73
                  WF L
Sbjct: 268 QKAGVDGWFKL 278

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+ ++ +P+WN++F +  ++ SD K R + + +WD+     NDF+G +   +S     
Sbjct: 213 TKTIKSSLNPEWNETFRFQ-LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 270
Query: 148 DEPEWFYL 155
               WF L
Sbjct: 271 GVDGWFKL 278

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 75  KHTLELQFPLSNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFL 134
           KH LE +    NL        +P WN++F + G     +  R + + V DY R+  ND +
Sbjct: 60  KHKLETKVKRKNL--------NPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPI 111
Query: 135 GEVIIELS 142
           GEV I L+
Sbjct: 112 GEVSIPLN 119

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K+  +T+  T +P WN++F +  ++  D++ R + + VWD+ R   NDF+G +   +S  
Sbjct: 58  KQKTRTVKATLNPVWNETFVF-NLKPGDVE-RRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
Query: 63  LCTDEPEWFYL 73
           L      W+ L
Sbjct: 116 LKAPVDGWYKL 126

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K+  KT+ +T +P+WN+SF +  ++ SD K R + + +WD+ R   NDF G +   +S  
Sbjct: 56  KQKTKTIRSTLNPQWNESFTF-KLKPSD-KDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
Query: 63  LCTDEPEWFYL 73
                  W+ L
Sbjct: 114 XKXPASGWYKL 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-23
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-22
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-11
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	6e-21
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	7e-21
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-20
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	5e-20
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-19
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-19
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	6e-19
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	9e-19
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	8e-19
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	1e-18
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-18
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-18
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-18
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	9e-17
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-18
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	7e-18
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-18
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	8e-18
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	8e-17
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-16
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-16
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-16
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	6e-16
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-15
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-15
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-15
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-15
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-15
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-15
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	9e-15
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	4e-15
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	9e-15
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	3e-14
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-14
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-13
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	3e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	6e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	6e-13
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-12
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-11
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-12
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-11
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	9e-12
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-11
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-11
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-11
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-10
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-10
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-10
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	1e-10
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-09
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-09
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-09
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-09
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-09
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	8e-09
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	6e-09
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	9e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	9e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-08
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-08
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-08
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-08
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-08
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-08
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	5e-08
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	8e-07
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-06
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-06
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-06
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-05
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	6e-05

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 93.0 bits (231), Expect = 2e-23
 Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 55/207 (26%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS---SL 63
           K    T +P +N++F +  +  ++L  R +  +V+D+ R+  +D +G+V+++        
Sbjct: 60  KVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 118

Query: 64  CTDEPEWFYLTKHTL------ELQFPLS----------------NL-------------- 87
             D P W  + +         EL F L                 NL              
Sbjct: 119 PPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVK 178

Query: 88  --------------SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDF 133
                         +    NT +P +N++  +  +    ++   + I V DY   G N+ 
Sbjct: 179 ASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEV 237

Query: 134 LGEVIIELSSSLCTDEPEWFYLTKHKN 160
           +G   +   ++       W  +  +  
Sbjct: 238 IGVCRVGPEAADPHGREHWAEMLANPR 264

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS---S 144
           +K    T +P +N++F +  +  ++L  R +  +V+D+ R+  +D +G+V+++       
Sbjct: 59  TKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 117

Query: 145 LCTDEPEWFYLTKHKNS 161
              D P W  + +  + 
Sbjct: 118 QPPDRPLWRDILEGGSE 134

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 89.9 bits (223), Expect = 2e-22
 Identities = 34/190 (17%), Positives = 73/190 (38%), Gaps = 54/190 (28%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++     
Sbjct: 59  KVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117

Query: 67  EPEWFY------------LTKHTLELQFPLS------------NL--------------- 87
             E +             L      L++  +            NL               
Sbjct: 118 VTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKI 177

Query: 88  -------------SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFL 134
                        +    NT +P +N+SF +  +    ++   + +TV DY + G ND +
Sbjct: 178 HLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAI 236

Query: 135 GEVIIELSSS 144
           G+V +  +S+
Sbjct: 237 GKVFVGYNST 246

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 14/78 (17%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++    
Sbjct: 58  TKVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116

Query: 148 DEPEWFYLTKHKNSGSNP 165
              E +   +        
Sbjct: 117 HVTEEWRDLQSAEKEEQE 134

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 82.8 bits (205), Expect = 6e-21
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
           K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS S   
Sbjct: 69  KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128

Query: 66  DEPEWFYLTKHT 77
           + P W+ L + T
Sbjct: 129 NTPRWYPLKEQT 140

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 82.4 bits (204), Expect = 7e-21
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
           +K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS S  
Sbjct: 68  TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127

Query: 147 TDEPEWFYLTKHKNS 161
            + P W+ L +   S
Sbjct: 128 DNTPRWYPLKEQTES 142

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 80.4 bits (199), Expect = 4e-20
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSL 145
           +KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L
Sbjct: 59  TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118

Query: 146 CTDEPEWFYL 155
             DEP W+ L
Sbjct: 119 LDDEPHWYKL 128

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 79.6 bits (197), Expect = 5e-20
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLC 64
           KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L 
Sbjct: 60  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 119

Query: 65  TDEPEWFYL 73
            DEP W+ L
Sbjct: 120 DDEPHWYKL 128

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 79.3 bits (196), Expect = 1e-19
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSL 145
           +KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L
Sbjct: 62  TKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 121

Query: 146 CTDEPEWFYLTKHKNSGSN 164
             DEP W+ L  H +  S+
Sbjct: 122 LDDEPHWYKLQTHDSGPSS 140

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 78.1 bits (193), Expect = 3e-19
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLC 64
           KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L 
Sbjct: 63  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 122

Query: 65  TDEPEWFYLTKH 76
            DEP W+ L  H
Sbjct: 123 DDEPHWYKLQTH 134

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 77.4 bits (191), Expect = 6e-19
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
           +K      +P WN++F + G     +  R + + V DY R+  ND +GEV I L+   L 
Sbjct: 65  TKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLT 124

Query: 147 TDEPEWFYLTKHKNS 161
             +  W  L     S
Sbjct: 125 QMQTFWKDLKPSGPS 139

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 77.0 bits (190), Expect = 9e-19
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
           K      +P WN++F + G     +  R + + V DY R+  ND +GEV I L+   L  
Sbjct: 66  KVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ 125

Query: 66  DEPEWFYLTKHT 77
            +  W  L    
Sbjct: 126 MQTFWKDLKPSG 137

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 76.9 bits (190), Expect = 8e-19
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
           K    T +P +N+   Y G  +  L+ R ++++V        N FLG + + L   +L  
Sbjct: 61  KISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK 120

Query: 66  DEPEWFYLTKHT 77
           +  +W+ LT  T
Sbjct: 121 ETVKWYQLTAAT 132

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 76.6 bits (189), Expect = 1e-18
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
           +K    T +P +N+   Y G  +  L+ R ++++V        N FLG + + L   +L 
Sbjct: 60  TKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119

Query: 147 TDEPEWFYLT 156
            +  +W+ LT
Sbjct: 120 KETVKWYQLT 129

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 77.0 bits (190), Expect = 1e-18
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KTL NT +P WN++  Y GI   D++ +++ I+V D  ++G N+F+GE    L   L  
Sbjct: 70  TKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL-KKLKA 128

Query: 148 DEPEWFYL 155
           ++ + F +
Sbjct: 129 NQRKNFNI 136

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 76.2 bits (188), Expect = 2e-18
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           KTL NT +P WN++  Y GI   D++ +++ I+V D  ++G N+F+GE    L   L  +
Sbjct: 71  KTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL-KKLKAN 129

Query: 67  EPEWFYL 73
           + + F +
Sbjct: 130 QRKNFNI 136

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 76.6 bits (189), Expect = 1e-18
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           ++ L  T DP ++++F + GI  + ++  ++  T+  + R+  +D +GEV+I LS    +
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121

Query: 148 DEP--EWFYLTKHKNSG 162
           +        +    +SG
Sbjct: 122 EGKMLMNREIISGPSSG 138

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 71.6 bits (176), Expect = 9e-17
 Identities = 16/65 (24%), Positives = 35/65 (53%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           + L  T DP ++++F + GI  + ++  ++  T+  + R+  +D +GEV+I LS    ++
Sbjct: 63  RVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

Query: 67  EPEWF 71
                
Sbjct: 123 GKMLM 127

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 76.7 bits (189), Expect = 1e-18
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+  + +P+WN++F +  ++ SD   R + + +WD+     NDF+G +   +S     
Sbjct: 72  TKTIKCSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129

Query: 148 DEPEWFYLTKHK 159
               WF L   +
Sbjct: 130 GVDGWFKLLSQE 141

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 74.7 bits (184), Expect = 7e-18
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           KT+  + +P+WN++F +  ++ SD   R + + +WD+     NDF+G +   +S      
Sbjct: 73  KTIKCSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 130

Query: 67  EPEWFYLTKH 76
              WF L   
Sbjct: 131 VDGWFKLLSQ 140

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 72.0 bits (177), Expect = 8e-17
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
               +T +P ++++  Y  I  S L  R+++ +VW + R+G N FLGE  I++ S     
Sbjct: 66  SIKRDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK 124

Query: 67  E-PEWFYLTKHTLE 79
           +      L      
Sbjct: 125 KLDHCLPLHGKISA 138

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 70.8 bits (174), Expect = 2e-16
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +    +T +P ++++  Y  I  S L  R+++ +VW + R+G N FLGE  I++ S    
Sbjct: 65  TSIKRDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLD 123

Query: 148 DE-PEWFYL 155
            +      L
Sbjct: 124 KKLDHCLPL 132

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +     T  P + + + +  I   + + R++ +TV D+ ++  +  +G+V + L      
Sbjct: 72  TGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLV 130

Query: 148 DEPEWFYLTKHKNSGS 163
               W+         S
Sbjct: 131 KGGHWWKALIPSGPSS 146

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 69.8 bits (171), Expect = 6e-16
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
                T  P + + + +  I   + + R++ +TV D+ ++  +  +G+V + L       
Sbjct: 73  GVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131

Query: 67  EPEWFY 72
              W+ 
Sbjct: 132 GGHWWK 137

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 69.7 bits (171), Expect = 6e-16
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
           +K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++    
Sbjct: 73  TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

Query: 147 TDEPEWFYL 155
               EW  L
Sbjct: 132 HVTEEWRDL 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
           K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++     
Sbjct: 74  KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132

Query: 66  DEPEWFYL 73
              EW  L
Sbjct: 133 VTEEWRDL 140

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
           +K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++    
Sbjct: 81  TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139

Query: 147 TDEPEWFYLTKHK 159
               EW  L   +
Sbjct: 140 HVTEEWRDLQSAE 152

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
           K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++     
Sbjct: 82  KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 140

Query: 66  DEPEWFYLT 74
              EW  L 
Sbjct: 141 VTEEWRDLQ 149

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           ++ L  ++   +N+ F+   +    L  +++ + V    R  + + LG   I L+    +
Sbjct: 85  TRPLDASDTLVFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS 143

Query: 148 DE--PEWFYL 155
            E    W+ L
Sbjct: 144 GERSTRWYNL 153

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           + L  ++   +N+ F+   +    L  +++ + V    R  + + LG   I L+    + 
Sbjct: 86  RPLDASDTLVFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144

Query: 67  E--PEWFYL 73
           E    W+ L
Sbjct: 145 ERSTRWYNL 153

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND--FLGEVIIELSS-S 144
           +     T +P ++QSF +  +   +++ R++++ V +   +   D   LG+V++ L+S  
Sbjct: 64  THVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEE 122

Query: 145 LCTDEPEWFYLTKHKNSGS 163
           L     +W+ LT+     S
Sbjct: 123 LAKGWTQWYDLTEDSGPSS 141

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 66.6 bits (163), Expect = 9e-15
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND--FLGEVIIELSS-SL 63
                T +P ++QSF +  +   +++ R++++ V +   +   D   LG+V++ L+S  L
Sbjct: 65  HVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL 123

Query: 64  CTDEPEWFYLTKHT 77
                +W+ LT+ +
Sbjct: 124 AKGWTQWYDLTEDS 137

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 67.4 bits (165), Expect = 4e-15
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
           +          W +    P +   +L   ++ +T+    R+  +   GE+ + L   S+ 
Sbjct: 63  TALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121

Query: 147 TDEPEWFYL-TKHKNSG 162
               +W  L T   +SG
Sbjct: 122 LGAAQWGELKTSGPSSG 138

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 66.6 bits (163), Expect = 9e-15
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
                     W +    P +   +L   ++ +T+    R+  +   GE+ + L   S+  
Sbjct: 64  ALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122

Query: 66  DEPEWFYLTKHT 77
              +W  L    
Sbjct: 123 GAAQWGELKTSG 134

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 65.5 bits (160), Expect = 3e-14
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148
           +    T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+     
Sbjct: 79  QIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG-ER 136

Query: 149 EPEWFYLTKHK 159
              W+   K+K
Sbjct: 137 LKHWYECLKNK 147

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 64.7 bits (158), Expect = 7e-14
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           +    T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   + +S+     
Sbjct: 79  QIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG-ER 136

Query: 67  EPEWFYLTKH 76
              W+   K+
Sbjct: 137 LKHWYECLKN 146

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLC 146
           ++T+ +  DP +++ FF+P ++  D + + + +TVW+       +  +G +   + S L 
Sbjct: 67  TQTVPDCRDPAFHEHFFFP-VQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT 124

Query: 147 TDEP--EWFYLTKHK 159
            D+    W+YL    
Sbjct: 125 PDKEISGWYYLLGEH 139

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG-VNDFLGEVIIELSSSLCT 65
           +T+ +  DP +++ FF+P ++  D + + + +TVW+       +  +G +   + S L  
Sbjct: 68  QTVPDCRDPAFHEHFFFP-VQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTP 125

Query: 66  DEP--EWFYLTKH 76
           D+    W+YL   
Sbjct: 126 DKEISGWYYLLGE 138

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 62.0 bits (151), Expect = 6e-13
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
                T +  +N+ F +  I    L+  S+E  V D  R   N+ +G +++  ++ 
Sbjct: 72  HVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 126

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 62.0 bits (151), Expect = 6e-13
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
                T +  +N+ F +  I    L+  S+E  V D  R   N+ +G +++  ++ 
Sbjct: 72  HVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 126

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +K + N  +P WN+   +           S+ I V D+   G N  +G   + L   L  
Sbjct: 42  TKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL-KDLTG 100

Query: 148 DEPE--WFYLTKHKNSGSNPT 166
           D+     + L    N     T
Sbjct: 101 DQSRSLPYKLISLLNEKGQDT 121

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           K + N  +P WN+   +           S+ I V D+   G N  +G   + L   L  D
Sbjct: 43  KKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL-KDLTGD 101

Query: 67  EPEWFYLTKHTLE 79
           +         +L 
Sbjct: 102 QSRSLPYKLISLL 114

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 59.2 bits (144), Expect = 5e-12
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
            T+    +P+WN+ F +P     D     +E+TV+D       DFLG+V I L  S+   
Sbjct: 50  HTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDG 104

Query: 67  EPEWFYLTKHTLE 79
           +P  + L    LE
Sbjct: 105 QPNCYVLKNKDLE 117

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           + T+    +P+WN+ F +P     D     +E+TV+D       DFLG+V I L  S+  
Sbjct: 49  THTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL-LSIRD 103

Query: 148 DEPEWFYLT----KHKNSGS 163
            +P  + L     +    G 
Sbjct: 104 GQPNCYVLKNKDLEQAFKGV 123

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 59.0 bits (143), Expect = 9e-12
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
           +    NT +P +N+SF +  +    ++   + +TV DY + G ND +G+V +  +S+
Sbjct: 66  TTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
               NT +P +N+SF +  +    ++   + +TV DY + G ND +G+V +  +S+
Sbjct: 67  TIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
            T     +P +N+SF +  I    L+  +I ITV D  +   ND +G++ +   S 
Sbjct: 58  VTKKRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 144
            T     +P +N+SF +  I    L+  +I ITV D  +   ND +G++ +   S 
Sbjct: 58  VTKKRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           KT+  + +PKWN+   +    +       +   V+D  R   +DFLG+V + L      +
Sbjct: 63  KTIKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118

Query: 67  EPEWFYLTKHTLELQ 81
                  T     L 
Sbjct: 119 PRLERPYTFKDFVLH 133

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+  + +PKWN+   +    +       +   V+D  R   +DFLG+V + L   L T
Sbjct: 62  TKTIKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPL-YPLPT 116

Query: 148 DEPEWFYLTKHKN 160
           + P        K+
Sbjct: 117 ENPRLERPYTFKD 129

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSS-SL 145
           ++    T DP + QS  +        + + +++ VW DY R     F+G   I L    L
Sbjct: 72  TRIARKTLDPLYQQSLVFDE----SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL 127

Query: 146 CTDEPEWFYLT 156
            +    W+ L 
Sbjct: 128 SSMVIGWYKLF 138

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSS-SLC 64
           +    T DP + QS  +        + + +++ VW DY R     F+G   I L    L 
Sbjct: 73  RIARKTLDPLYQQSLVFDE----SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLS 128

Query: 65  TDEPEWFYLT 74
           +    W+ L 
Sbjct: 129 SMVIGWYKLF 138

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           +   NTN PKW Q         S      +   VW +     +  LG   +++  +L   
Sbjct: 73  EKCNNTNSPKWKQPLTVIVTPVS-----KLHFRVWSHQTLKSDVLLGTAALDIYETL--- 124

Query: 67  EPEWFYLTKHTLELQFPLSN 86
           +     L +  + LQ     
Sbjct: 125 KSNNMKLEEVVVTLQLGGDK 144

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 52.2 bits (125), Expect = 4e-09
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           ++   NTN PKW Q         S      +   VW +     +  LG   +++  +L +
Sbjct: 72  TEKCNNTNSPKWKQPLTVIVTPVS-----KLHFRVWSHQTLKSDVLLGTAALDIYETLKS 126

Query: 148 D----EPEWFYLT-KHKNSGSNPTIDNNV 171
           +    E     L        +    D ++
Sbjct: 127 NNMKLEEVVVTLQLGGDKEPTETIGDLSI 155

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 16/81 (19%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-----------TRYGVNDFLGE 136
           +KT+    +P W ++F +     SD     I++ V D             +   +DFLG+
Sbjct: 53  TKTIYGNLNPVWEENFHFECHNSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQ 108

Query: 137 VIIELSSSLCTDEPEWFYLTK 157
            IIE+  +L  +   W+ L K
Sbjct: 109 TIIEV-RTLSGEMDVWYNLDK 128

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 16/84 (19%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-----------TRYGVNDFLGEV 55
           KT+    +P W ++F +     SD     I++ V D             +   +DFLG+ 
Sbjct: 54  KTIYGNLNPVWEENFHFECHNSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQT 109

Query: 56  IIELSSSLCTDEPEWFYLTKHTLE 79
           IIE+  +L  +   W+ L K T +
Sbjct: 110 IIEV-RTLSGEMDVWYNLDKRTDK 132

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 51.8 bits (124), Expect = 3e-09
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           + T   TN P W+  F    +         IE+ V+     G +DF+    I+    L  
Sbjct: 54  TATKQKTNSPAWHDEFVTD-VCNGR----KIELAVFHDAPIGYDDFVANCTIQFEELLQN 108

Query: 148 DE---PEWFYLTKH 158
                 +W  L   
Sbjct: 109 GSRHFEDWIDLEPE 122

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 50.6 bits (121), Expect = 8e-09
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
            T   TN P W+  F    +         IE+ V+     G +DF+    I+    L   
Sbjct: 55  ATKQKTNSPAWHDEFVTD-VCNGR----KIELAVFHDAPIGYDDFVANCTIQFEELLQNG 109

Query: 67  E---PEWFYLTKH 76
                +W  L   
Sbjct: 110 SRHFEDWIDLEPE 122

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           +   N  +P WN++F +        +   +EIT+ D     +++ LG     + SS+   
Sbjct: 46  RHFNNDINPVWNETFEFI---LDPNQENVLEITLMDANY-VMDETLGTATFTV-SSMKVG 100

Query: 67  EP--EWFYLTKHT---LELQFPLSN 86
           E     F   + T   LE+   +++
Sbjct: 101 EKKEVPFIFNQVTEMVLEMSLEVAS 125

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           ++   N  +P WN++F +        +   +EIT+ D     +++ LG     + SS+  
Sbjct: 45  TRHFNNDINPVWNETFEFI---LDPNQENVLEITLMDANY-VMDETLGTATFTV-SSMKV 99

Query: 148 DEP--EWFYLTKHKN 160
            E     F   +   
Sbjct: 100 GEKKEVPFIFNQVTE 114

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 52.6 bits (125), Expect = 9e-09
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
             + N N+P+W     +  +  S      + + VWD      +D LG       S     
Sbjct: 430 GVVWNNNNPRWTDKMDFENVLLSTGG--PLRVQVWDADYGWDDDLLGSCDRSPHSG---F 484

Query: 67  EPEWFYLTKHTLELQF 82
                 L    ++  +
Sbjct: 485 HEVTCELNHGRVKFSY 500

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +  + N N+P+W     +  +  S      + + VWD      +D LG       S    
Sbjct: 429 TGVVWNNNNPRWTDKMDFENVLLSTGG--PLRVQVWDADYGWDDDLLGSCDRSPHSG--- 483

Query: 148 DEPEWFYL 155
                  L
Sbjct: 484 FHEVTCEL 491

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+  + +PKWN+   +  + +       I   V+D  R   +DFLG+V + L   L T
Sbjct: 50  TKTIKKSLNPKWNEEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPL-YPLPT 104

Query: 148 DEPEWFYLTKHKN 160
           + P        K+
Sbjct: 105 ENPRMERPYTFKD 117

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           KT+  + +PKWN+   +  + +       I   V+D  R   +DFLG+V + L      +
Sbjct: 51  KTIKKSLNPKWNEEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTEN 106

Query: 67  EPEWFYLTKHTLELQ 81
                  T     L 
Sbjct: 107 PRMERPYTFKDFVLH 121

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND---FLGEVIIELSSS 144
           + T+ NT DPKWNQ +     +       SI I+VW++ +        FLG V +  ++ 
Sbjct: 43  TDTVKNTLDPKWNQHYDLYVGKTD-----SITISVWNHKKIHKKQGAGFLGCVRLLSNAI 97

Query: 145 LCTDEPEWFYLTKHKNSGSNP 165
               +  +  L   K + S+ 
Sbjct: 98  SRLKDTGYQRLDLCKLNPSDT 118

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVND---FLGEVIIELSSSL 63
            T+ NT DPKWNQ +     +       SI I+VW++ +        FLG V +  ++  
Sbjct: 44  DTVKNTLDPKWNQHYDLYVGKTD-----SITISVWNHKKIHKKQGAGFLGCVRLLSNAIS 98

Query: 64  CTDEPEWFYLT 74
              +  +  L 
Sbjct: 99  RLKDTGYQRLD 109

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           + T   TN P +N+ F    +         +E+ V+  T  G + F+    ++    L T
Sbjct: 76  TSTKQKTNKPTYNEEFCAN-VTDG----GHLELAVFHETPLGYDHFVANCTLQFQELLRT 130

Query: 148 DEPE-----WFYLTKH 158
                    W  L   
Sbjct: 131 TGASDTFEGWVDLEPE 146

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
            T   TN P +N+ F    +         +E+ V+  T  G + F+    ++    L T 
Sbjct: 77  STKQKTNKPTYNEEFCAN-VTDG----GHLELAVFHETPLGYDHFVANCTLQFQELLRTT 131

Query: 67  EPE-----WFYLTKH 76
                   W  L   
Sbjct: 132 GASDTFEGWVDLEPE 146

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS--SL 145
           +        P+WN++F +     +      ++  ++D      +D +GE  I L      
Sbjct: 47  NVAEGMGTTPEWNETFIFTVSEGTT----ELKAKIFDKDVGTEDDAVGEATIPLEPVFVE 102

Query: 146 CTDEPEWFYLTKHKNS 161
            +  P  + + K +  
Sbjct: 103 GSIPPTAYNVVKDEEY 118

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 13/81 (16%)

Query: 11  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS--SLCTDEP 68
               P+WN++F +     +      ++  ++D      +D +GE  I L       +  P
Sbjct: 52  MGTTPEWNETFIFTVSEGTT----ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107

Query: 69  EWFYLTKH-------TLELQF 82
             + + K         + L F
Sbjct: 108 TAYNVVKDEEYKGEIWVALSF 128

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 88  SKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146
           S T+A   + P W Q F +   R        + + VW+      +  +G V I L +   
Sbjct: 36  STTIAVRGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQ 90

Query: 147 TDE---PEWFYLTKHKNSGSNPT 166
           ++E    EW  L        +  
Sbjct: 91  SNEEGPGEWLTLDSQAIMADSEI 113

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 11  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--- 67
             + P W Q F +   R        + + VW+      +  +G V I L +   ++E   
Sbjct: 42  RGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGP 96

Query: 68  PEWFYLTKHTL 78
            EW  L    +
Sbjct: 97  GEWLTLDSQAI 107

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 88  SKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC 146
           S T+A   + P W Q F +   R        + + VW+      +  +G V I L +   
Sbjct: 45  STTIAVRGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQ 99

Query: 147 TDE---PEWFYLTKHKNSGSNPTID 168
           ++E    EW  L        +    
Sbjct: 100 SNEEGPGEWLTLDSQAIMADSEICG 124

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 11  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--- 67
             + P W Q F +   R        + + VW+      +  +G V I L +   ++E   
Sbjct: 51  RGSQPSWEQDFMFEINRLDL----GLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGP 105

Query: 68  PEWFYL 73
            EW  L
Sbjct: 106 GEWLTL 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.96
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.95
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.68
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.67
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.65
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.64
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.62
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.62
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.61
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.61
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.6
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.6
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.6
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.59
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.59
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.59
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.59
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.59
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.58
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.58
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.58
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.58
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.58
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.58
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.57
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.57
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.57
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.56
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.55
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.54
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.54
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.53
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.53
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.52
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.52
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.52
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.51
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.51
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.51
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.5
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.5
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.49
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.48
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.48
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.48
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.47
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.47
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.47
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.46
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.46
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.45
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.45
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.44
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.44
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.44
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.43
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.42
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.41
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.41
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.41
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.4
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.4
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.38
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.36
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.35
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.35
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.35
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.33
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.32
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.31
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.31
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.3
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.28
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.27
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.23
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.22
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.18
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.1
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.09
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.05
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.02
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.01
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.0
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.96
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	98.95
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	98.85
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.56
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.5
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.48
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.47
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.47
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.39
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	97.97
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	97.95
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	97.92
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	97.9
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.62
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	94.47
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	82.51
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.47

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.96  E-value=3.3e-29  Score=191.44  Aligned_cols=155  Identities=23%  Similarity=0.392  Sum_probs=128.2

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEecccc---
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKHT---   77 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~~---   77 (174)
                      ++++|+++++++||.|||+|.|. +..+++....|.|.|||++.++++++||++.++|..+..... ..|++|.+..   
T Consensus        54 ~~~~T~~~~~~~nP~wne~f~f~-v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~  132 (284)
T 2r83_A           54 KKFETKVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEE  132 (284)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEEC-CCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCC
T ss_pred             ceEeCCcccCCCCCeeCceEEEE-echHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecccccc
Confidence            46789999999999999999998 888777678999999999999999999999999998875543 3499986431   


Q ss_pred             ----eEec---------------------cC-----------------------CCCccccccCCCCCccccEEEeCccc
Q psy6192          78 ----LELQ---------------------FP-----------------------LSNLSKTLANTNDPKWNQSFFYPGIR  109 (174)
Q Consensus        78 ----~~l~---------------------~p-----------------------~~~kT~~~~~t~~P~wne~~~f~~~~  109 (174)
                          +++.                     ++                       .+++|+++++++||+|||.|.|. ++
T Consensus       133 ~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~  211 (284)
T 2r83_A          133 QEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VP  211 (284)
T ss_dssp             CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CC
T ss_pred             ccccccEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEe-CC
Confidence                1111                     00                       04689999999999999999999 88


Q ss_pred             cCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC-------------CCCcCceeecccC
Q psy6192         110 RSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-------------CTDEPEWFYLTKH  158 (174)
Q Consensus       110 ~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~-------------~~~~~~W~~L~~~  158 (174)
                      .+++....|.|+|||++.++++++||++.|+++++.             ....++||+|.+.
T Consensus       212 ~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             TTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             HHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            888877889999999999999999999999998631             1245689999874

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.95  E-value=3.5e-28  Score=187.03  Aligned_cols=157  Identities=22%  Similarity=0.407  Sum_probs=124.2

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEe-cccccC-C-CCCceEEecccc-
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIE-LSSSLC-T-DEPEWFYLTKHT-   77 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~-l~~~~~-~-~~~~w~~L~~~~-   77 (174)
                      +++||+++++++||.|||+|.|. +..+++....|.|.|||++.++++++||++.++ +..+.. . ....|+.|.... 
T Consensus        55 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~  133 (296)
T 1dqv_A           55 KKFQTKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS  133 (296)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEEE-CCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS
T ss_pred             eeEeCCccCCCCCCcEeeEEEEE-ecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccc
Confidence            46799999999999999999998 887777667899999999999999999999985 433332 2 234588875421 


Q ss_pred             -----eEec--------------------------------------c-C-----CCCccccccCCCCCccccEEEeCcc
Q psy6192          78 -----LELQ--------------------------------------F-P-----LSNLSKTLANTNDPKWNQSFFYPGI  108 (174)
Q Consensus        78 -----~~l~--------------------------------------~-p-----~~~kT~~~~~t~~P~wne~~~f~~~  108 (174)
                           +++.                                      + +     .+++|++++++.||+|||.|.|. +
T Consensus       134 ~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v  212 (296)
T 1dqv_A          134 EKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-V  212 (296)
T ss_dssp             CCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-C
T ss_pred             cccccceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEE-c
Confidence                 1110                                      0 0     14689999999999999999999 8


Q ss_pred             ccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC--------------CCcCceeecccCCC
Q psy6192         109 RRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC--------------TDEPEWFYLTKHKN  160 (174)
Q Consensus       109 ~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~--------------~~~~~W~~L~~~~~  160 (174)
                      +..++....|.|+|||++.++++++||.+.|+++++..              ...++||+|.+...
T Consensus       213 ~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~~  278 (296)
T 1dqv_A          213 APESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKT  278 (296)
T ss_dssp             CSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC-
T ss_pred             CHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCccc
Confidence            88777767899999999999999999999999987632              24568999887433

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.67  E-value=1.5e-16  Score=109.03  Aligned_cols=74  Identities=14%  Similarity=0.329  Sum_probs=66.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK  159 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~  159 (174)
                      +++|+++++++||+|||.|.|. ++..++....|.|+|||++.++++++||++.|++.++... ...+|++|.+.+
T Consensus        60 ~~kT~v~~~tlnP~wnE~f~f~-v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           60 EAQTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             EEECCCCCCCSSEECSSCEEEE-CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cEecccCcCCCCCcCCceEEEE-ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            4789999999999999999999 8888887789999999999999999999999999998754 567999998843

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=3.5e-16  Score=107.22  Aligned_cols=74  Identities=14%  Similarity=0.326  Sum_probs=65.4

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-CCCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-~~~~w~~L~~~~   77 (174)
                      ++||+++++|+||+|||+|.|. +..+++....|.|.|||++.++++++||++.++|+.+... ....|++|.+.+
T Consensus        60 ~~kT~v~~~tlnP~wnE~f~f~-v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           60 EAQTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             EEECCCCCCCSSEECSSCEEEE-CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             cEecccCcCCCCCcCCceEEEE-ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            5789999999999999999998 8888887789999999999999999999999999998743 445699997653

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.64  E-value=5.1e-17  Score=113.59  Aligned_cols=72  Identities=17%  Similarity=0.337  Sum_probs=64.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCC--CCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC--TDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~--~~~~~W~~L~~  157 (174)
                      ++||+++++|+||+|||+|.|. ++..++....|.|+|||++.++++++||++.|++.++..  ....+||+|++
T Consensus        82 ~~kT~v~~~tlnP~wnE~F~f~-v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A           82 LFRTRPLDASDTLVFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EEECCCEECCSSEEEEEEEEEE-CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             ceeCCcCCCCCCCccccEEEEE-cCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            5899999999999999999999 887777668999999999999999999999999999854  35679999974

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.62  E-value=2.4e-16  Score=109.28  Aligned_cols=79  Identities=25%  Similarity=0.555  Sum_probs=67.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC--CCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH--KNSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~--~~~~  162 (174)
                      +++|++++++.||+|||+|.|. +...++. ..|.|+|||++.++++++||++.|++.++......+||+|.+.  ++..
T Consensus        69 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~~~~g~~~  146 (149)
T 1a25_A           69 KQKTKTIKCSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYF  146 (149)
T ss_dssp             CEECCCCSSCSSCEEEEEEEEE-CCSGGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEECBCHHHHTTC
T ss_pred             eEecceeCCCCCCcCCcEEEEE-eccccCC-CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCccCCeEEccCCCCCccc
Confidence            5799999999999999999998 8765544 6899999999999999999999999999887777899999984  5555


Q ss_pred             CCC
Q psy6192         163 SNP  165 (174)
Q Consensus       163 ~~~  165 (174)
                      ++|
T Consensus       147 ~~p  149 (149)
T 1a25_A          147 NVP  149 (149)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            543

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.62  E-value=2.6e-16  Score=109.97  Aligned_cols=72  Identities=17%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC--CCCCceEEecc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC--TDEPEWFYLTK   75 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~--~~~~~w~~L~~   75 (174)
                      ++||+++++|+||+|||+|.|. ++.+++....|.|.|||++.++++++||++.++|+.+..  .....|+.|.+
T Consensus        82 ~~kT~v~~~tlnP~wnE~F~f~-v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A           82 LFRTRPLDASDTLVFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EEECCCEECCSSEEEEEEEEEE-CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             ceeCCcCCCCCCCccccEEEEE-cCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            6899999999999999999998 887777678899999999999999999999999999853  23345999863

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.61  E-value=4.7e-16  Score=106.10  Aligned_cols=75  Identities=23%  Similarity=0.450  Sum_probs=63.4

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHK  159 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~  159 (174)
                      +++|+++++++||+|||+|.|..++..++....|.|+|||.+.++++++||++.|++.++... ...+||+|.+.+
T Consensus        57 ~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  132 (134)
T 2b3r_A           57 KRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT  132 (134)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC--
T ss_pred             eecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCcc
Confidence            579999999999999999999624545555689999999999999999999999999998775 567999998743

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.61  E-value=9.6e-16  Score=104.52  Aligned_cols=75  Identities=24%  Similarity=0.433  Sum_probs=63.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      +++||+++++|+||.|||+|.|..++.+++....|.|.|||++.++++++||++.++|+.+.... ...|++|.+.
T Consensus        56 ~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           56 SKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             CCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             ceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            46799999999999999999995356666566789999999999999999999999999987643 3459999764

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.60  E-value=8.2e-16  Score=105.79  Aligned_cols=72  Identities=22%  Similarity=0.429  Sum_probs=65.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      +++|++++++.||+|||+|.|. +...++....|.|+|||++.++++++||++.|++.++... ...+|++|++
T Consensus        70 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           70 KFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             cEECccCcCCCCCcCcCeEEEe-ecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            5799999999999999999999 8877776689999999999999999999999999998776 5679999986

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.60  E-value=1.3e-15  Score=104.84  Aligned_cols=73  Identities=23%  Similarity=0.424  Sum_probs=64.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~   75 (174)
                      +++||+++++++||.|||+|.|. +...++....|.|.|||++.++++++||++.++|+.+.... ...|++|++
T Consensus        69 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           69 KKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CCEECCCCCSCSSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             ccEECccCcCCCCCcCcCeEEEe-ecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            46899999999999999999998 88777666789999999999999999999999999887653 345999975

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.60  E-value=9.3e-16  Score=106.82  Aligned_cols=80  Identities=20%  Similarity=0.507  Sum_probs=66.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC-CceeEEEEEeCCcCCC--CCcCceeecccCCC-
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV-NDFLGEVIIELSSSLC--TDEPEWFYLTKHKN-  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~-~~~iG~~~l~l~~~~~--~~~~~W~~L~~~~~-  160 (174)
                      +++|+++++++||+|||+|.|. +...++. ..|.|+|||.+.+++ +++||++.|++.++..  ....+||+|+++.+ 
T Consensus        64 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A           64 HQKTQTVPDCRDPAFHEHFFFP-VQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             CEECCCCTTCSSCEEEEEEEEE-CCGGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             EEeccccCCCCCCccccEEEEe-cccHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            5789999999999999999999 8766666 469999999998876 8999999999999875  35679999999443 


Q ss_pred             -CCCCCc
Q psy6192         161 -SGSNPT  166 (174)
Q Consensus       161 -~~~~~~  166 (174)
                       .+++.+
T Consensus       142 ~~~~lkv  148 (153)
T 3fbk_A          142 RTKHLKV  148 (153)
T ss_dssp             GTCCCBC
T ss_pred             cccccee
Confidence             444444

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.59  E-value=2.1e-16  Score=109.48  Aligned_cols=76  Identities=25%  Similarity=0.411  Sum_probs=66.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKNS  161 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~~  161 (174)
                      +++|+++++++||+|||+|.|. ++..++....|.|+|||++.++++++||++.|++.++... ...+||+|.+++..
T Consensus        62 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  138 (148)
T 3fdw_A           62 KRKTSIKRDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA  138 (148)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-CCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred             ccccccCCCCCCCcEeeEEEEE-eChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence            4789999999999999999999 8888777788999999999999999999999999998765 56799999995543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=9.1e-16  Score=106.08  Aligned_cols=75  Identities=17%  Similarity=0.285  Sum_probs=65.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~  160 (174)
                      +++|+++++++||+|||.|.|. +...++....|.|+|||++.++++++||++.|++.++... ....|+.|.+.+.
T Consensus        69 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~  144 (147)
T 2enp_A           69 SKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP  144 (147)
T ss_dssp             CEECCCCCSCSSCCCCBCCEEC-CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCCC
T ss_pred             ceEeecccCCCCCeEeeeEEEE-eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCCC
Confidence            5799999999999999999999 8776666678999999999999999999999999998765 4568999998654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.59  E-value=1.2e-15  Score=106.14  Aligned_cols=73  Identities=22%  Similarity=0.419  Sum_probs=64.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||.|.|. +...++....|.|+|||++.++++++||++.|++.++..+ ..++||+|.+.
T Consensus        78 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A           78 KFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             CEECCCCTTCSSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             eEeccccCCCCCCcCcccEEEe-ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            5789999999999999999998 8776666689999999999999999999999999998765 45799999763

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.59  E-value=2.3e-15  Score=103.11  Aligned_cols=76  Identities=42%  Similarity=0.874  Sum_probs=65.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC--CceeEEEEEeCCcCCCCCcCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTDEPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~--~~~iG~~~l~l~~~~~~~~~~W~~L~~~~~  160 (174)
                      +++|+++++++||+|||.|.|..+...++....|.|+|||++.+++  +++||++.|++.++...+..+||+|.+..+
T Consensus        59 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~~~~  136 (141)
T 1v27_A           59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDS  136 (141)
T ss_dssp             CCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBCCSS
T ss_pred             ceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCCCCceEECccccc
Confidence            5899999999999999999998224455666899999999999887  999999999999987777789999998443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.59  E-value=2.5e-15  Score=101.51  Aligned_cols=73  Identities=44%  Similarity=0.867  Sum_probs=58.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC--CceEEEEEEecccccCCCCCceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~--~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      +++||+++++|+||.|||+|.|..++.+++....|.|.|||++.+++  +++||.+.++|+.+.......|++|+
T Consensus        55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            46899999999999999999997335556666889999999999987  99999999999998776656699984

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.6e-15  Score=104.79  Aligned_cols=74  Identities=16%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~   76 (174)
                      +++||+++++++||+|||+|.|. +..+++....|.|.|||++.++++++||.+.++|..+..... ..|+.|.+.
T Consensus        68 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A           68 NSKQTGVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             SCEECCCCCSCSSCCCCBCCEEC-CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             cceEeecccCCCCCeEeeeEEEE-eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            46899999999999999999998 887666667899999999999999999999999999875543 458888764

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.6e-15  Score=103.11  Aligned_cols=75  Identities=27%  Similarity=0.414  Sum_probs=64.7

Q ss_pred             CCccccccCCCCCccccEEEeCcc-ccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGI-RRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~-~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~~~  160 (174)
                      +++|++++++.||+|||.|.|. + +..++....|.|+|||++.++++++||++.|++.++.... ..+||+|.+.++
T Consensus        62 ~~kT~v~~~t~nP~wne~f~f~-~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  138 (141)
T 2d8k_A           62 KLETKVKRKNLNPHWNETFLFE-GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP  138 (141)
T ss_dssp             EEECCCCTTCSSCCCCEEEEEC-SCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred             cEeCceEcCCCCCccccEEEEC-ccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence            4789999999999999999998 5 3344555789999999999999999999999999988774 568999998654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.58  E-value=2.6e-15  Score=104.40  Aligned_cols=74  Identities=23%  Similarity=0.415  Sum_probs=64.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      +++||+++++++||.|||+|.|. +..+++....|.|.|||++.++++++||.+.++|..+.... ...|++|.+.
T Consensus        77 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A           77 KKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             ceEeccccCCCCCCcCcccEEEe-ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            46899999999999999999998 88776666789999999999999999999999999886544 3459999753

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.58  E-value=2.5e-15  Score=101.49  Aligned_cols=71  Identities=44%  Similarity=0.881  Sum_probs=58.2

Q ss_pred             CCccccccCCCCCccccEEEeCcc-ccCCCCcceEEEEEEeCCCCCC--CceeEEEEEeCCcCCCCCcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGI-RRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTDEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~-~~~~~~~~~l~i~v~d~~~~~~--~~~iG~~~l~l~~~~~~~~~~W~~L~  156 (174)
                      +++|++++++.||+|||.|.|. + ...++....|.|+|||.+..++  +++||++.+++.++...+..+||+|+
T Consensus        56 ~~kT~v~~~t~nP~wne~f~f~-~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           56 KRRTKTVKKTLEPKWNQTFIYS-PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             EEECCCCSSBSSCEEEEEEEEC-SCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ceecccccCCCCCccccEEEEc-cCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            4799999999999999999998 5 4455566899999999999887  99999999999998877778999985

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.58  E-value=9.1e-16  Score=106.25  Aligned_cols=75  Identities=27%  Similarity=0.396  Sum_probs=65.5

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT   77 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~   77 (174)
                      +++||+++++|+||.|||+|.|. +..+++....|.|.|||++.++++++||.+.++|+.+.... ...|++|.+.+
T Consensus        61 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A           61 GKRKTSIKRDTVNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             GEEECCCCSSCSSCEEEEEEEEE-CCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CccccccCCCCCCCcEeeEEEEE-eChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            36899999999999999999998 88888777889999999999999999999999999886543 44699998764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.9e-15  Score=103.82  Aligned_cols=75  Identities=20%  Similarity=0.416  Sum_probs=64.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC--CceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCT-DEPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~--~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~  160 (174)
                      +++|+++++++||+|||.|.|. ++..++....|.|+|||++.+++  +++||++.|++.++... ...+||+|.+.+.
T Consensus        61 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A           61 RRKTHVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEC-CCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             cccCCccCCCCCCCcCceEEEE-ecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            5799999999999999999999 87766666789999999998753  57999999999998765 5679999998543

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.57  E-value=8.3e-16  Score=105.60  Aligned_cols=76  Identities=38%  Similarity=0.809  Sum_probs=64.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKN  160 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~  160 (174)
                      +++|+++++++||+|||.|.|..++..++....|.|+|||++.++++++||++.|++.++... ...+||+|.+.++
T Consensus        65 ~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  141 (142)
T 1rh8_A           65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             HTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             eeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccCC
Confidence            479999999999999999999524555555678999999999999999999999999998764 5679999988654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.57  E-value=3.9e-15  Score=101.98  Aligned_cols=75  Identities=44%  Similarity=0.871  Sum_probs=63.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC--CceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~--~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      +++||+++++|+||+|||+|.|..+..+++....|.|.|||++.+++  +++||.+.++|..+.......|++|.+.
T Consensus        58 ~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~~  134 (141)
T 1v27_A           58 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTH  134 (141)
T ss_dssp             SCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBCC
T ss_pred             cceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCCCCceEECccc
Confidence            46799999999999999999997345566666889999999999987  9999999999999876655569999764

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=5.5e-15  Score=101.45  Aligned_cols=76  Identities=29%  Similarity=0.471  Sum_probs=63.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT   77 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~   77 (174)
                      +++||+++++++||.|||+|.|..++.+.+....|.|.|||++.++++++||++.++|..+.... ...|++|.+..
T Consensus        61 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A           61 HKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             SEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             ccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            46899999999999999999997224445555789999999999999999999999999987654 33499997653

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.56  E-value=1e-14  Score=99.70  Aligned_cols=75  Identities=23%  Similarity=0.399  Sum_probs=63.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCc--eEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE--WFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~--w~~L~~~   76 (174)
                      +++||+++++++||.|||+|.|..++.+++....|.|.|||++.++++++||++.++|..+.......  |++|.+.
T Consensus        58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            57899999999999999999993377777767899999999999999999999999999987654432  7888653

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.55  E-value=9.7e-15  Score=99.84  Aligned_cols=78  Identities=23%  Similarity=0.408  Sum_probs=65.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-Cc-CceeecccCCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DE-PEWFYLTKHKNSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~-~~W~~L~~~~~~~  162 (174)
                      +++|+++++++||+|||.|.|..++..++....|.|+|||++.++++++||++.|++.++... +. ..|++|.++..+|
T Consensus        59 ~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~sG  138 (138)
T 1ugk_A           59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPSSG  138 (138)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSSSCC
T ss_pred             eEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCCCCC
Confidence            579999999999999999999326666676689999999999999999999999999998776 33 3578998765443

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.54  E-value=6e-15  Score=102.21  Aligned_cols=73  Identities=27%  Similarity=0.601  Sum_probs=63.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      +++||+++++++||.|||+|.|. +...++. ..|.|.|||++.++++++||.+.++|..+.......|++|.+.
T Consensus        68 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~~  140 (149)
T 1a25_A           68 SKQKTKTIKCSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQ  140 (149)
T ss_dssp             SCEECCCCSSCSSCEEEEEEEEE-CCSGGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEECBCH
T ss_pred             ceEecceeCCCCCCcCCcEEEEE-eccccCC-CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCccCCeEEccCC
Confidence            46899999999999999999998 7765543 6799999999999999999999999998876655569999764

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.54  E-value=1e-14  Score=99.47  Aligned_cols=59  Identities=27%  Similarity=0.418  Sum_probs=54.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS  144 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~  144 (174)
                      +++|++++++.||+|||.|.|. ++..++....|.|+|||.+.++++++||++.|++.++
T Consensus        54 ~~kT~~~~~t~nP~wne~f~f~-v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           54 KKKTVTKKRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-CCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred             eEeCccccCCCCCcCcceEEEE-CChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence            4789999999999999999999 8888777788999999999999999999999999874

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.53  E-value=1.1e-14  Score=103.27  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=65.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEE-eCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKNSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~-d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~~~  162 (174)
                      +++|+++++++||+|||+|.|. +...   ...|.|+|| |++.++++++||++.|++.++... ...+||+|.+..+..
T Consensus        69 ~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~~  144 (171)
T 2q3x_A           69 KKKTRIARKTLDPLYQQSLVFD-ESPQ---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLV  144 (171)
T ss_dssp             EEECCCCCSCSSCEEEEEEECS-SCCT---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGGGS
T ss_pred             ceeCccCCCCCCCCCCcEEEEE-ecCC---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCccccC
Confidence            4799999999999999999999 7543   478999999 999999999999999999998755 567999999976644


Q ss_pred             C
Q psy6192         163 S  163 (174)
Q Consensus       163 ~  163 (174)
                      +
T Consensus       145 ~  145 (171)
T 2q3x_A          145 D  145 (171)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.52  E-value=1.8e-14  Score=101.56  Aligned_cols=76  Identities=29%  Similarity=0.576  Sum_probs=61.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC-------------CCCcCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-------------CTDEPE  151 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~-------------~~~~~~  151 (174)
                      +++|+++++++||+|||.|.|. +...++....|.|+|||++.++++++||++.|++.++.             ....++
T Consensus        75 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~  153 (166)
T 2cm5_A           75 KHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIER  153 (166)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEE
T ss_pred             eEeCCcccCCCCCcccceEEEE-cchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceE
Confidence            5799999999999999999999 88777777899999999999999999999999999842             113457


Q ss_pred             eeecccCCCC
Q psy6192         152 WFYLTKHKNS  161 (174)
Q Consensus       152 W~~L~~~~~~  161 (174)
                      ||.|.+..+.
T Consensus       154 Wh~L~~~~~~  163 (166)
T 2cm5_A          154 WHQLQNENHV  163 (166)
T ss_dssp             EEECBC----
T ss_pred             eeECCCcccc
Confidence            8888765443

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=9.7e-15  Score=100.27  Aligned_cols=75  Identities=20%  Similarity=0.401  Sum_probs=62.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC--CceEEEEEEecccccCC-CCCceEEecccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLCT-DEPEWFYLTKHT   77 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~--~~~lG~~~~~l~~~~~~-~~~~w~~L~~~~   77 (174)
                      +++||+++++|+||+|||+|.|. +..+++....|.|.|||++.++.  +++||.+.++|..+... ....|++|.+..
T Consensus        60 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A           60 GRRKTHVSKKTLNPVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEEC-CCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             CcccCCccCCCCCCCcCceEEEE-ecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            46899999999999999999998 88776666789999999998864  57999999999987654 345599997653

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.52  E-value=1.9e-13  Score=94.91  Aligned_cols=71  Identities=25%  Similarity=0.427  Sum_probs=61.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCc-------Cceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-------PEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~-------~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|. +...   ...|.|+|||++.++++++||++.|++.++.....       .+||+|.+
T Consensus        59 ~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~  134 (153)
T 3b7y_A           59 SVQTKTIKKSLNPKWNEEILFR-VHPQ---QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP  134 (153)
T ss_dssp             EEECCCCSSCSSCCCCEEEEEE-ECTT---TCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBC
T ss_pred             eeeCccccCCCCCCCCCEEEEE-ecCC---CCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccc
Confidence            3799999999999999999998 7643   36899999999999999999999999999876642       48999987


Q ss_pred             CC
Q psy6192         158 HK  159 (174)
Q Consensus       158 ~~  159 (174)
                      ..
T Consensus       135 ~~  136 (153)
T 3b7y_A          135 RS  136 (153)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.51  E-value=1.2e-14  Score=101.24  Aligned_cols=74  Identities=22%  Similarity=0.556  Sum_probs=62.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC-CceEEEEEEecccccC--CCCCceEEecccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV-NDFLGEVIIELSSSLC--TDEPEWFYLTKHT   77 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~-~~~lG~~~~~l~~~~~--~~~~~w~~L~~~~   77 (174)
                      ++++|+++++|+||.|||+|.|. +...++. ..|.|.|||++.+++ +++||.+.++|..+..  .....|++|.+..
T Consensus        63 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~  139 (153)
T 3fbk_A           63 RHQKTQTVPDCRDPAFHEHFFFP-VQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH  139 (153)
T ss_dssp             TCEECCCCTTCSSCEEEEEEEEE-CCGGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred             cEEeccccCCCCCCccccEEEEe-cccHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence            46899999999999999999998 8777765 459999999999877 8999999999999874  3344599997754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.51  E-value=2.6e-15  Score=103.08  Aligned_cols=75  Identities=41%  Similarity=0.833  Sum_probs=63.4

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-CCCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-~~~~w~~L~~~~   77 (174)
                      ++||+++++|+||.|||+|.|..+..+++....|.|.|||++.++++++||.+.++|+.+... ....|++|.+.+
T Consensus        65 ~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             HTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             eeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            478999999999999999999536666655678999999999999999999999999987653 455699997654

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.51  E-value=2.5e-14  Score=100.05  Aligned_cols=73  Identities=26%  Similarity=0.464  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcC----------C---CCCcCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS----------L---CTDEPE  151 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~----------~---~~~~~~  151 (174)
                      +++|+++++++||+|||.|.|. +...++....|.|+|||++.++++++||++.|++.++          .   ....++
T Consensus        63 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~  141 (159)
T 1tjx_A           63 KKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ  141 (159)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEE
T ss_pred             eeeCceecCCCCCcccceEEEE-cCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeee
Confidence            4799999999999999999999 8877777788999999999999999999999999863          1   124568


Q ss_pred             eeecccC
Q psy6192         152 WFYLTKH  158 (174)
Q Consensus       152 W~~L~~~  158 (174)
                      ||+|.+.
T Consensus       142 W~~L~~~  148 (159)
T 1tjx_A          142 WHTLQVE  148 (159)
T ss_dssp             EEECBCH
T ss_pred             EEECcCc
Confidence            9999874

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.50  E-value=6.1e-15  Score=102.54  Aligned_cols=71  Identities=18%  Similarity=0.296  Sum_probs=60.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|+++++++||+|||+|.|. +...++....|.|+|||++.++++++||++.|++.+ ...+..+|+.|..
T Consensus        68 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~-~~~~~~~W~~l~~  138 (153)
T 1w15_A           68 KKKTHVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA-EGSGGGHWKEICD  138 (153)
T ss_dssp             EEECCCCCSCSSEEEEEEEEEE-CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC-CSHHHHHHHHHHH
T ss_pred             eEecCcccCCCCCeecceEEEE-CCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC-CchHHHHHHHHHh
Confidence            4699999999999999999999 888877778899999999999999999999999987 2223445666554

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.50  E-value=1.5e-14  Score=99.34  Aligned_cols=74  Identities=31%  Similarity=0.562  Sum_probs=61.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCc-eEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE-WFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~-w~~L~~   75 (174)
                      +++||+++++++||.|||+|.|..+..+++....|.|.|||++.++++++||.+.++|+.+....... |..|..
T Consensus        66 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           66 NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             GEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            46899999999999999999996455555545789999999999999999999999999987655443 777754

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.49  E-value=6.4e-14  Score=99.28  Aligned_cols=71  Identities=24%  Similarity=0.399  Sum_probs=61.1

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEE-eCCCCCCCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVW-DYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~-d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~   77 (174)
                      ++||+++++|+||+|||+|.|. +...   ...|.|.|| |++.++++++||.+.++|..+.... ...|++|.+..
T Consensus        69 ~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A           69 KKKTRIARKTLDPLYQQSLVFD-ESPQ---GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             EEECCCCCSCSSCEEEEEEECS-SCCT---TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             ceeCccCCCCCCCCCCcEEEEE-ecCC---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            6799999999999999999998 7543   468999999 9999999999999999999987443 44599997654

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=8.4e-14  Score=95.26  Aligned_cols=71  Identities=23%  Similarity=0.329  Sum_probs=59.8

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcC-CcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEE
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFY   72 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~-~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~   72 (174)
                      ++++||+++++++||+|||+|.|. +....+ ....|.|.|||++.++++++||.+.+++..+..... ..|+.
T Consensus        37 ~~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~  109 (140)
T 2dmh_A           37 DEKKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYK  109 (140)
T ss_dssp             SCEEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEE
T ss_pred             CEeEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEe
Confidence            357899999999999999999998 765433 347899999999999999999999999998865543 44887

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.48  E-value=8.1e-14  Score=93.63  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=59.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~   76 (174)
                      +++||+++++++||.|||+|.|. +....  ...|.|.|||++.++ +++||.+.++|+.+..... ..|++|.+.
T Consensus        41 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~--~~~l~i~V~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~~  112 (126)
T 1rlw_A           41 SRKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  112 (126)
T ss_dssp             CCEECCCCTTCSSCEEEEEEEEE-ECTTS--CCEEEEEEEECCSSC-CEEEEEEEEEGGGSCTTCEEEEEEEETTT
T ss_pred             ceEEccccCCCCCCcccceEEEE-ecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHccCCCcEEEEEEcCCC
Confidence            57899999999999999999998 75443  468999999999885 8999999999998875443 349999764

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.48  E-value=5.3e-14  Score=94.52  Aligned_cols=69  Identities=20%  Similarity=0.374  Sum_probs=59.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|. +...+  ...|.|+|||.+.. ++++||++.+++.++..+. ...|++|.+
T Consensus        42 ~~kT~v~~~t~nP~wne~f~f~-v~~~~--~~~l~i~V~d~d~~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T 1rlw_A           42 RKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQ  111 (126)
T ss_dssp             CEECCCCTTCSSCEEEEEEEEE-ECTTS--CCEEEEEEEECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETT
T ss_pred             eEEccccCCCCCCcccceEEEE-ecCCC--CCEEEEEEEECCCC-CCceeEEEEEEHHHccCCCcEEEEEEcCC
Confidence            5799999999999999999998 75443  46899999999987 5899999999999987663 469999987

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.47  E-value=7.7e-14  Score=95.08  Aligned_cols=59  Identities=29%  Similarity=0.426  Sum_probs=54.2

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS   62 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~   62 (174)
                      +++|+++++++||.|||+|.|. +..+.+....|.|.|||++.++++++||.+.+++..+
T Consensus        54 ~~kT~~~~~t~nP~wne~f~f~-v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~  112 (138)
T 3n5a_A           54 KKKTVTKKRNLNPIFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG  112 (138)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-CCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred             eEeCccccCCCCCcCcceEEEE-CChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence            6789999999999999999998 8888776778999999999999999999999999863

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.47  E-value=1.2e-14  Score=101.61  Aligned_cols=68  Identities=22%  Similarity=0.387  Sum_probs=58.9

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-----CcCceeecccC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----DEPEWFYLTKH  158 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-----~~~~W~~L~~~  158 (174)
                      .+|+++++|+||+|||.|.|. +..    ...|.|+|||.+.++++++||.+.|++.++...     ..+.||+|.+.
T Consensus        74 ~kT~v~~ktlnP~WNE~F~f~-v~~----~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~~  146 (157)
T 2fk9_A           74 GQTSTKQKTNKPTYNEEFCAN-VTD----GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE  146 (157)
T ss_dssp             EECCCCSSCSSCEEEEEEEEE-EEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBSS
T ss_pred             EEeeecCCCCCCccCcEEEEE-cCC----CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCCC
Confidence            589999999999999999998 753    258999999999999999999999999998643     34689999763

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.47  E-value=1.8e-13  Score=94.97  Aligned_cols=71  Identities=24%  Similarity=0.399  Sum_probs=60.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-------CceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-------PEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-------~~w~~L~   74 (174)
                      +++||+++++++||.|||+|.|. +...   ...|.|.|||++.++++++||++.++|..+.....       ..|++|.
T Consensus        58 ~~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~  133 (153)
T 3b7y_A           58 TSVQTKTIKKSLNPKWNEEILFR-VHPQ---QHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH  133 (153)
T ss_dssp             EEEECCCCSSCSSCCCCEEEEEE-ECTT---TCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECB
T ss_pred             eeeeCccccCCCCCCCCCEEEEE-ecCC---CCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccc
Confidence            36799999999999999999998 7643   36799999999999999999999999998876543       3699986


Q ss_pred             cc
Q psy6192          75 KH   76 (174)
Q Consensus        75 ~~   76 (174)
                      +.
T Consensus       134 ~~  135 (153)
T 3b7y_A          134 PR  135 (153)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.46  E-value=1e-13  Score=96.95  Aligned_cols=73  Identities=27%  Similarity=0.486  Sum_probs=61.2

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccc----------cCC---CCCc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS----------LCT---DEPE   69 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~----------~~~---~~~~   69 (174)
                      ++||+++++++||.|||+|.|. +..+++....|.|.|||++.++++++||.+.+++..+          ...   ....
T Consensus        63 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~  141 (159)
T 1tjx_A           63 KKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ  141 (159)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEE
T ss_pred             eeeCceecCCCCCcccceEEEE-cCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeee
Confidence            5799999999999999999998 8887776678999999999999999999999999853          111   2235


Q ss_pred             eEEeccc
Q psy6192          70 WFYLTKH   76 (174)
Q Consensus        70 w~~L~~~   76 (174)
                      |+.|.+.
T Consensus       142 W~~L~~~  148 (159)
T 1tjx_A          142 WHTLQVE  148 (159)
T ss_dssp             EEECBCH
T ss_pred             EEECcCc
Confidence            9998754

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.46  E-value=3.8e-14  Score=96.69  Aligned_cols=69  Identities=25%  Similarity=0.486  Sum_probs=59.7

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC---cCceeecccCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHK  159 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~---~~~W~~L~~~~  159 (174)
                      .+|+++++|+||+|||.|.|. +...    ..|.|+|||.+.++++++||.+.|++.++...+   .+.|+.|.+.|
T Consensus        52 ~~T~~~~~t~nP~WnE~f~f~-v~~~----~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~~G  123 (136)
T 1gmi_A           52 GQTATKQKTNSPAWHDEFVTD-VCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEG  123 (136)
T ss_dssp             EECCCCSSCSSCEEEEEEEEE-EEEE----CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSC
T ss_pred             eeeeEECCCcCCccCCEEEEE-ecCC----CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCCCe
Confidence            589999999999999999998 7543    689999999999999999999999999987653   26899998744

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=94.39  Aligned_cols=69  Identities=22%  Similarity=0.351  Sum_probs=59.9

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceee
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFY  154 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~  154 (174)
                      +++|++++++.||+|||.|.|. +....+ ....|.|+|||.+.++++++||++.|++.++.... ...|+.
T Consensus        39 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~  109 (140)
T 2dmh_A           39 KKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYK  109 (140)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEE
T ss_pred             eEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEe
Confidence            4799999999999999999998 765433 34789999999999999999999999999987664 468998

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.45  E-value=2e-13  Score=97.01  Aligned_cols=71  Identities=27%  Similarity=0.430  Sum_probs=56.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcC-------ceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-------EWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~-------~W~~L~~  157 (174)
                      +++|+++++++||+|||.|.|. +...   ...|.|.|||.+.++++++||++.|+|.++......       +||+|.+
T Consensus        47 ~~kT~v~~~t~nP~Wne~f~f~-v~~~---~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~  122 (176)
T 3m7f_B           47 SVQTKTIKKSLNPKWNEEILFR-VLPQ---RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP  122 (176)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-ECTT---TCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBC
T ss_pred             ceeCceECCCCCCcccceEEEE-EcCC---CCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccc
Confidence            3699999999999999999998 7643   267999999999999999999999999998876432       7999987


Q ss_pred             CC
Q psy6192         158 HK  159 (174)
Q Consensus       158 ~~  159 (174)
                      ..
T Consensus       123 ~~  124 (176)
T 3m7f_B          123 RS  124 (176)
T ss_dssp             SS
T ss_pred             cC
Confidence            43

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.44  E-value=1.9e-13  Score=94.39  Aligned_cols=70  Identities=27%  Similarity=0.540  Sum_probs=60.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC-----------CCCceeEEEEEeCCcCCCCCcCcee
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEWF  153 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~-----------~~~~~iG~~~l~l~~~~~~~~~~W~  153 (174)
                      +++|+++++++||+|||.|.|. +....   ..|.|+|||.+..           +++++||++.|++.++ .....+|+
T Consensus        50 ~~kT~~~~~t~nP~Wne~f~f~-v~~~~---~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l-~~~~~~w~  124 (148)
T 3kwu_A           50 KKRTKTIYGNLNPVWEENFHFE-CHNSS---DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL-SGEMDVWY  124 (148)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-ECSTT---CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC-CSEEEEEE
T ss_pred             EEECCccCCCCCCCcccEEEEE-ecCCC---CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC-cCCCCEEE
Confidence            4799999999999999999998 76442   6799999999986           7899999999999998 34567999


Q ss_pred             ecccCC
Q psy6192         154 YLTKHK  159 (174)
Q Consensus       154 ~L~~~~  159 (174)
                      +|.+.+
T Consensus       125 ~L~~~~  130 (148)
T 3kwu_A          125 NLDKRT  130 (148)
T ss_dssp             ECBCSS
T ss_pred             EcccCC
Confidence            999743

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.44  E-value=2.1e-13  Score=96.06  Aligned_cols=60  Identities=35%  Similarity=0.669  Sum_probs=54.8

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS   62 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~   62 (174)
                      +++||+++++|+||+|||+|.|. +...++....|.|.|||++.++++++||.+.+++..+
T Consensus        74 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A           74 AKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             CEEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             ceEeCCcccCCCCCcccceEEEE-cchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            46899999999999999999998 8877776789999999999999999999999999864

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.44  E-value=4.1e-14  Score=98.83  Aligned_cols=68  Identities=22%  Similarity=0.370  Sum_probs=57.7

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC--C---CCceEEeccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT--D---EPEWFYLTKH   76 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~--~---~~~w~~L~~~   76 (174)
                      .||+++++|+||.|||+|.|. +..    ...|.|.|||++.++++++||.+.+++.++...  .   ...|++|.+.
T Consensus        74 ~kT~v~~ktlnP~WNE~F~f~-v~~----~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~~  146 (157)
T 2fk9_A           74 GQTSTKQKTNKPTYNEEFCAN-VTD----GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE  146 (157)
T ss_dssp             EECCCCSSCSSCEEEEEEEEE-EEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBSS
T ss_pred             EEeeecCCCCCCccCcEEEEE-cCC----CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCCC
Confidence            589999999999999999997 642    357999999999999999999999999987643  2   3459999764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.43  E-value=2e-13  Score=94.83  Aligned_cols=58  Identities=22%  Similarity=0.336  Sum_probs=53.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS   61 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~   61 (174)
                      ++||+++++++||.|||+|.|. +...++....|.|.|||++.++++++||.+.++++.
T Consensus        68 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           68 KKKTHVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             EEECCCCCSCSSEEEEEEEEEE-CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             eEecCcccCCCCCeecceEEEE-CCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            5799999999999999999998 888877667899999999999999999999999986

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.42  E-value=1.7e-13  Score=93.43  Aligned_cols=68  Identities=25%  Similarity=0.503  Sum_probs=58.1

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---CceEEeccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---PEWFYLTKH   76 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~~w~~L~~~   76 (174)
                      .+|+++++|+||.|||+|.|. +...    ..|.|.|||++.++++++||.+.+++.++.....   ..|+.|.+.
T Consensus        52 ~~T~~~~~t~nP~WnE~f~f~-v~~~----~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~~  122 (136)
T 1gmi_A           52 GQTATKQKTNSPAWHDEFVTD-VCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE  122 (136)
T ss_dssp             EECCCCSSCSSCEEEEEEEEE-EEEE----CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSS
T ss_pred             eeeeEECCCcCCccCCEEEEE-ecCC----CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCCC
Confidence            589999999999999999997 6533    6799999999999999999999999998876432   359999764

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.41  E-value=9.5e-14  Score=95.26  Aligned_cols=73  Identities=30%  Similarity=0.558  Sum_probs=60.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|..++..++....|.|+|||++.++++++||++.|++.++..++ ...|++|..
T Consensus        67 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           67 KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             eeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            5799999999999999999996244444444789999999999999999999999999987764 346777754

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.41  E-value=1.1e-13  Score=93.97  Aligned_cols=70  Identities=30%  Similarity=0.502  Sum_probs=60.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHK  159 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~~  159 (174)
                      +++|++++++.||+|||.|.|. +...   ...|.|+|||.+..+++++||++.|++.++.. +..+|++|.+..
T Consensus        46 ~~kT~~~~~t~nP~wne~f~f~-~~~~---~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-~~~~w~~L~~~~  115 (133)
T 2ep6_A           46 RLQTHTVYKNLNPEWNKVFTFP-IKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD-GQPNCYVLKNKD  115 (133)
T ss_dssp             EEECCCCSSCSSCCCCEEEEEE-ESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGCCS-SCCEECCCBCSC
T ss_pred             EEEeeeecCCCCCccccEEEEE-ecCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHccC-CCceEEEeecCC
Confidence            4799999999999999999998 7642   36899999999999899999999999999854 456999998743

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.41  E-value=4.2e-13  Score=95.39  Aligned_cols=70  Identities=26%  Similarity=0.405  Sum_probs=54.8

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCC-------ceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-------EWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~-------~w~~L~   74 (174)
                      +++||+++++++||.|||+|.|. +...   ...|.|.|||++.++++++||.+.++|..+......       .|++|.
T Consensus        46 ~~~kT~v~~~t~nP~Wne~f~f~-v~~~---~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~  121 (176)
T 3m7f_B           46 TSVQTKTIKKSLNPKWNEEILFR-VLPQ---RHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH  121 (176)
T ss_dssp             EEEECCCCSSCSSCEEEEEEEEE-ECTT---TCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECB
T ss_pred             cceeCceECCCCCCcccceEEEE-EcCC---CCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEcc
Confidence            35799999999999999999998 7643   357999999999999999999999999998765432       599886


Q ss_pred             c
Q psy6192          75 K   75 (174)
Q Consensus        75 ~   75 (174)
                      .
T Consensus       122 ~  122 (176)
T 3m7f_B          122 P  122 (176)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.40  E-value=4.1e-13  Score=92.69  Aligned_cols=69  Identities=29%  Similarity=0.531  Sum_probs=57.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC-----------CCCceEEEEEEecccccCCCCCce
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY-----------GVNDFLGEVIIELSSSLCTDEPEW   70 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~-----------~~~~~lG~~~~~l~~~~~~~~~~w   70 (174)
                      +++||+++++++||.|||+|.|. +....   ..|.|.|||++..           +++++||.+.++|+.+. .....|
T Consensus        49 ~~~kT~~~~~t~nP~Wne~f~f~-v~~~~---~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~-~~~~~w  123 (148)
T 3kwu_A           49 TKKRTKTIYGNLNPVWEENFHFE-CHNSS---DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS-GEMDVW  123 (148)
T ss_dssp             EEEECCCCCSCSSCEEEEEEEEE-ECSTT---CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC-SEEEEE
T ss_pred             EEEECCccCCCCCCCcccEEEEE-ecCCC---CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc-CCCCEE
Confidence            56899999999999999999997 65432   5799999999986           78999999999999883 334459


Q ss_pred             EEecc
Q psy6192          71 FYLTK   75 (174)
Q Consensus        71 ~~L~~   75 (174)
                      ++|.+
T Consensus       124 ~~L~~  128 (148)
T 3kwu_A          124 YNLDK  128 (148)
T ss_dssp             EECBC
T ss_pred             EEccc
Confidence            99974

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.40  E-value=5.6e-13  Score=101.35  Aligned_cols=73  Identities=22%  Similarity=0.423  Sum_probs=65.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      +++|+++++++||+|||.|.|. +..+++....|.|+|||.+.++++++||++.+++.++..+ ....|++|.+.
T Consensus        55 ~~~T~~~~~~~nP~wne~f~f~-v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~  128 (284)
T 2r83_A           55 KFETKVHRKTLNPVFNEQFTFK-VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  128 (284)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEC-CCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             eEeCCcccCCCCCeeCceEEEE-echHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeecc
Confidence            4689999999999999999999 8877777789999999999999999999999999998766 45799999874

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.38  E-value=2e-13  Score=92.61  Aligned_cols=70  Identities=30%  Similarity=0.484  Sum_probs=59.2

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      +++||+++++++||.|||+|.|. +...   ...|.|.|||++.++++++||.+.+++..+.. ....|++|...
T Consensus        45 ~~~kT~~~~~t~nP~wne~f~f~-~~~~---~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-~~~~w~~L~~~  114 (133)
T 2ep6_A           45 DRLQTHTVYKNLNPEWNKVFTFP-IKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD-GQPNCYVLKNK  114 (133)
T ss_dssp             EEEECCCCSSCSSCCCCEEEEEE-ESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGCCS-SCCEECCCBCS
T ss_pred             EEEEeeeecCCCCCccccEEEEE-ecCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHccC-CCceEEEeecC
Confidence            46799999999999999999998 6532   36799999999999999999999999998864 33469988653

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.36  E-value=8.4e-13  Score=89.56  Aligned_cols=66  Identities=29%  Similarity=0.541  Sum_probs=51.6

Q ss_pred             Ccccccc-CCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcC---ceeecc
Q psy6192          86 NLSKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP---EWFYLT  156 (174)
Q Consensus        86 ~kT~~~~-~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~---~W~~L~  156 (174)
                      .+|++++ ++.||+|||.|.|. +...   ...|.|+|||.+ +++|++||++.|++.++...+..   .|+++.
T Consensus        34 ~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~  103 (131)
T 2cjt_A           34 VKSTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD  103 (131)
T ss_dssp             EEEECCCEESSSCEEEEEEEEE-ECCC---SSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred             EEEeEecCCCCCceECCEEEEE-EeCC---CCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCccccEEcc
Confidence            4555554 69999999999998 7643   256999999999 88999999999999998765433   455443

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.35  E-value=4.9e-13  Score=94.94  Aligned_cols=69  Identities=19%  Similarity=0.351  Sum_probs=57.2

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC------CceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE------PEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~------~~w~~L~~   75 (174)
                      +++||+++++++||+|||+|.|. +..    ...|.|.|||++.++++++||.+.++|..+.....      ..|++|..
T Consensus        68 ~~~kT~v~~~tlnP~Wne~f~f~-v~~----~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~  142 (173)
T 2nq3_A           68 QSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG  142 (173)
T ss_dssp             EEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEE
T ss_pred             EEeEccccCCCCCCeECCEEEEE-eCC----CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECcc
Confidence            46899999999999999999997 742    46899999999999999999999999988753211      23888754

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.35  E-value=9.2e-13  Score=89.37  Aligned_cols=64  Identities=23%  Similarity=0.394  Sum_probs=50.4

Q ss_pred             ceEeceeec-CCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCce
Q psy6192           2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEW   70 (174)
Q Consensus         2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w   70 (174)
                      ++.+|++++ +++||.|||+|.|. +...   ...|.|.|||++ +++|++||.+.++|+.+.......|
T Consensus        32 ~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~~~~~~   96 (131)
T 2cjt_A           32 QNVKSTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGP   96 (131)
T ss_dssp             TTEEEECCCEESSSCEEEEEEEEE-ECCC---SSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBCSSCCC
T ss_pred             cCEEEeEecCCCCCceECCEEEEE-EeCC---CCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhcCCCCc
Confidence            345666554 79999999999998 7642   356999999999 8899999999999998765543333

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.35  E-value=3e-13  Score=92.05  Aligned_cols=69  Identities=16%  Similarity=0.368  Sum_probs=58.1

Q ss_pred             ceEeceeec-CCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEec
Q psy6192           2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~   74 (174)
                      +++||++++ +++||.|||+|.|. +..   ....|.|.|||++.++++++||.+.++|..+....  ...|++|.
T Consensus        42 ~~~kT~~~~~~~~nP~Wne~f~f~-v~~---~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~  113 (136)
T 1wfj_A           42 QDQKSNVAEGMGTTPEWNETFIFT-VSE---GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV  113 (136)
T ss_dssp             CEEECCCCTTCCSSCEEEEEEEEE-EES---SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred             ccceeEeccCCCCCCccCcEEEEE-ECC---CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee
Confidence            467999998 89999999999998 664   34689999999999999999999999999874332  34599986

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.33  E-value=4e-13  Score=91.41  Aligned_cols=69  Identities=19%  Similarity=0.403  Sum_probs=59.1

Q ss_pred             CCcccccc-CCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC--cCceeeccc
Q psy6192          85 SNLSKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~-~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~--~~~W~~L~~  157 (174)
                      +++|++++ ++.||+|||.|.|. +..   ....|.|+|||.+.++++++||++.|++.++...+  ...||+|..
T Consensus        43 ~~kT~~~~~~~~nP~Wne~f~f~-v~~---~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~  114 (136)
T 1wfj_A           43 DQKSNVAEGMGTTPEWNETFIFT-VSE---GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK  114 (136)
T ss_dssp             EEECCCCTTCCSSCEEEEEEEEE-EES---SCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE
T ss_pred             cceeEeccCCCCCCccCcEEEEE-ECC---CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec
Confidence            47899998 89999999999998 764   34789999999999999999999999999984432  468999973

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.32  E-value=1e-12  Score=89.03  Aligned_cols=70  Identities=29%  Similarity=0.371  Sum_probs=56.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCC---CceEEEEEEecccccC--CCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV---NDFLGEVIIELSSSLC--TDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~---~~~lG~~~~~l~~~~~--~~~~~w~~L~~~   76 (174)
                      +++||+++++|+||.|||+|.|. +...    ..|.|.|||++.+++   +++||.+.+++..+..  .....|++|...
T Consensus        39 ~~~kT~v~~~t~nP~wne~f~f~-v~~~----~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~  113 (132)
T 3pyc_A           39 QCHSTDTVKNTLDPKWNQHYDLY-VGKT----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL  113 (132)
T ss_dssp             CEEECCCCSSCSSCEEEEEEEEE-EETT----CCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS
T ss_pred             ceEECCccCCCCCCCccCEEEEE-eCCC----CEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeec
Confidence            57899999999999999999997 6443    249999999999876   7999999999887632  233568887543

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.31  E-value=1e-12  Score=93.32  Aligned_cols=69  Identities=20%  Similarity=0.370  Sum_probs=59.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC------cCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD------EPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~------~~~W~~L~~~  158 (174)
                      +++|+++++++||+|||.|.|. +..    ...|.|+|||++.++++++||++.|++.++....      ...|+.|..+
T Consensus        69 ~~kT~v~~~tlnP~Wne~f~f~-v~~----~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~  143 (173)
T 2nq3_A           69 SKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD  143 (173)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES
T ss_pred             EeEccccCCCCCCeECCEEEEE-eCC----CCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccC
Confidence            4799999999999999999998 742    4789999999999999999999999999876431      1469999885

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.31  E-value=1.4e-12  Score=88.38  Aligned_cols=69  Identities=29%  Similarity=0.408  Sum_probs=57.4

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCC---CceeEEEEEeCCcCCCC--CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV---NDFLGEVIIELSSSLCT--DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~---~~~iG~~~l~l~~~~~~--~~~~W~~L~~~  158 (174)
                      +++|+++++++||+|||.|.|. +...    ..|.|+|||++.+++   +++||++.|++.++...  ...+|++|...
T Consensus        40 ~~kT~v~~~t~nP~wne~f~f~-v~~~----~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~  113 (132)
T 3pyc_A           40 CHSTDTVKNTLDPKWNQHYDLY-VGKT----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL  113 (132)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-EETT----CCEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS
T ss_pred             eEECCccCCCCCCCccCEEEEE-eCCC----CEEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeec
Confidence            4799999999999999999998 7543    349999999998876   79999999999887332  34689999874

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.30  E-value=1.9e-12  Score=87.94  Aligned_cols=65  Identities=17%  Similarity=0.379  Sum_probs=57.9

Q ss_pred             CceEeceeec-CCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC
Q psy6192           1 GFKEFAKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD   66 (174)
Q Consensus         1 ~~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~   66 (174)
                      |.|++|++++ ++.||+|||.|.|+ +......+..|.|.|||+++++++++||++.++|+++...+
T Consensus        47 g~k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~  112 (144)
T 3l9b_A           47 GQSFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEEN  112 (144)
T ss_dssp             TEEEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHS
T ss_pred             ccceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCC
Confidence            5689999998 69999999999998 77766667899999999999999999999999998876544

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.28  E-value=4.8e-12  Score=89.29  Aligned_cols=60  Identities=23%  Similarity=0.432  Sum_probs=49.4

Q ss_pred             ceEeceeec-CCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC
Q psy6192           2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD   66 (174)
Q Consensus         2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~   66 (174)
                      +++||++++ +++||.|||+|.|. +...   ...|.|.|||++ +++|++||.+.++|..+....
T Consensus        41 ~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           41 QNVESTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             TTEEEECCCEESSSCEEEEEEEEE-CCCT---TSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBCS
T ss_pred             cceEEEEecCCCCCCCCCCEEEEE-eeCC---CCEEEEEEEECC-CCCCceEEEEEEEHHHhcccC
Confidence            356677665 69999999999998 7632   356999999999 889999999999999876544

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.27  E-value=5.4e-12  Score=89.02  Aligned_cols=58  Identities=26%  Similarity=0.468  Sum_probs=48.6

Q ss_pred             Ccccccc-CCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC
Q psy6192          86 NLSKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD  148 (174)
Q Consensus        86 ~kT~~~~-~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~  148 (174)
                      +||++++ ++.||+|||.|.|. +...   ...|.|+|||.+ +++|++||++.|++.++....
T Consensus        43 ~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           43 VESTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             EEEECCCEESSSCEEEEEEEEE-CCCT---TSEEEEEEEECC-SSCCEEEEEEEEEGGGSCBCS
T ss_pred             eEEEEecCCCCCCCCCCEEEEE-eeCC---CCEEEEEEEECC-CCCCceEEEEEEEHHHhcccC
Confidence            5666665 69999999999998 7643   257999999999 889999999999999987654

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.23  E-value=1e-11  Score=95.04  Aligned_cols=73  Identities=23%  Similarity=0.522  Sum_probs=61.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEe-CCcCCCC--CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIE-LSSSLCT--DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~-l~~~~~~--~~~~W~~L~~~  158 (174)
                      +++|+++++++||+|||.|.|. +...++....|.|+|||++.++++++||++.++ +..+...  ....|+.|.+.
T Consensus        56 ~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~  131 (296)
T 1dqv_A           56 KFQTKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  131 (296)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEE-CCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             eEeCCccCCCCCCcEeeEEEEE-ecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccc
Confidence            4789999999999999999999 887777777899999999999999999999996 4444322  45689999863

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.22  E-value=3.2e-12  Score=108.03  Aligned_cols=83  Identities=24%  Similarity=0.526  Sum_probs=71.6

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc--CCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK--HKNSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~--~~~~~  162 (174)
                      +++|+++++++||+|||.|.|. +...+.. ..|.|+|||++..+++++||.+.++++++...+..+|+.|.+  ++++.
T Consensus       210 k~kT~v~~~tlnP~wne~f~f~-~~~~~~~-~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~~~g~~~  287 (674)
T 3pfq_A          210 KQKTKTIKSSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYF  287 (674)
T ss_dssp             CEECCCCSSCSSCEEEEEEEEE-CCSTTTT-CEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCEEEEEECBCTTGGGTC
T ss_pred             cccccccccccCCCccceeeee-cccCCcc-ceeeeEEeecccccccccccccccchhhhccCCcccceeecccccceec
Confidence            6789999999999999999998 7765544 679999999999999999999999999998888889999988  55567


Q ss_pred             CCCccCC
Q psy6192         163 SNPTIDN  169 (174)
Q Consensus       163 ~~~~~~~  169 (174)
                      ++|+++.
T Consensus       288 ~~p~~~~  294 (674)
T 3pfq_A          288 NVPVPPE  294 (674)
T ss_dssp             CEECCC-
T ss_pred             ccCCCCc
Confidence            7777643

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.18  E-value=7e-12  Score=85.11  Aligned_cols=74  Identities=18%  Similarity=0.270  Sum_probs=62.1

Q ss_pred             CCcccccc-CCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-cCceeecccCC
Q psy6192          85 SNLSKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHK  159 (174)
Q Consensus        85 ~~kT~~~~-~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-~~~W~~L~~~~  159 (174)
                      ++||++++ ++.||+|||.|.|+ +.-....++.|.|.|+|++++.++.+||++.+.|.++...+ ..-+-+|.++.
T Consensus        49 k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n  124 (144)
T 3l9b_A           49 SFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDN  124 (144)
T ss_dssp             EEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTT
T ss_pred             ceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCC
Confidence            58999998 69999999999999 87666777999999999999999999999999999876654 23445566543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.17  E-value=2.7e-11  Score=99.55  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=58.1

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecccceEe
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHTLEL   80 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~~~l   80 (174)
                      ++++||+++++++||.|||+|.|. +.... ....|+|.|||+|..++|++||.+.++|..   .....|++|....+.+
T Consensus       424 ~~~~kTkvik~tlNP~Wne~f~f~-~~~~~-~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~---g~~~~~~~l~~G~l~~  498 (540)
T 3nsj_A          424 GQEFRTGVVWNNNNPRWTDKMDFE-NVLLS-TGGPLRVQVWDADYGWDDDLLGSCDRSPHS---GFHEVTCELNHGRVKF  498 (540)
T ss_dssp             TEEEECCCBCSCSSCBCCCCEEEE-EEETT-TCCCEEEEEEECCSSSCCEEEEEEEECCCS---EEEEEEEECSSSEEEE
T ss_pred             CEeeeeeeecCCCCCCCCeEEEEE-EecCC-CCCEEEEEEEECCCCCCCCEEEEEEEEeeC---CcEEEEEEcCCeEEEE
Confidence            356899999999999999999996 43211 246799999999999999999999999872   2233588876554443

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.10  E-value=6.5e-11  Score=100.32  Aligned_cols=70  Identities=20%  Similarity=0.325  Sum_probs=61.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      ++||+++++++||+|||.|.|. +....  ...|.|+|||++.++ +++||++.|++.++..+ ...+|++|.+.
T Consensus        57 k~kTkvik~tlNPvWNEtF~F~-v~~~~--~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           57 RKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CEECCCCTTCSSCEEEEEEEEE-ECTTS--CCBCEEEEEECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             eEecceEcCCCCCeeeeEEEEE-ecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            5799999999999999999998 76532  368999999999998 99999999999998766 46799999875

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.09  E-value=1.1e-10  Score=98.94  Aligned_cols=71  Identities=20%  Similarity=0.324  Sum_probs=60.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~   76 (174)
                      +++||+++++++||+|||+|.|. +....  ...|.|.|||++.++ +++||++.++|..+.... ...|++|.+.
T Consensus        56 ~k~kTkvik~tlNPvWNEtF~F~-v~~~~--~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           56 SRKRTRHFNNDINPVWNETFEFI-LDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CCEECCCCTTCSSCEEEEEEEEE-ECTTS--CCBCEEEEEECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CeEecceEcCCCCCeeeeEEEEE-ecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            47899999999999999999998 76533  457999999999999 999999999999886554 4559999764

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.05  E-value=1.9e-10  Score=96.26  Aligned_cols=71  Identities=23%  Similarity=0.351  Sum_probs=59.8

Q ss_pred             ceEeceeecCC-CCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecccc
Q psy6192           2 FKEFAKTLANT-NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHT   77 (174)
Q Consensus         2 ~k~rT~~~~~t-~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~   77 (174)
                      +++||++++++ +||+|||+|.|. +...++  ..|+|.|||++.++++++||.+.++|..+..  +..|++|....
T Consensus       536 ~~~kTkvi~~ng~NP~WnE~f~F~-v~~~el--~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~--G~r~v~L~d~~  607 (624)
T 1djx_A          536 GSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ--GYRHVHLLSKN  607 (624)
T ss_dssp             EEEECCCCTTCSSSCEEEEEEEEE-ESCGGG--CEEEEEEEECCSSSCCEEEEEEEEEGGGBCC--EEEEEEEECTT
T ss_pred             ceeecccccCCCCCCccCceEEEE-EecCCC--CEEEEEEEEcCCCCCCceeEEEEEEHHHcCC--CcEEEeCCCCC
Confidence            46899999998 999999999998 776654  4799999999999999999999999998754  33588886543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.02  E-value=2.9e-10  Score=95.10  Aligned_cols=69  Identities=25%  Similarity=0.401  Sum_probs=59.4

Q ss_pred             CCccccccCC-CCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANT-NDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t-~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      ++||++++++ .||+|||.|.|. +..+++  ..|.|+|||.+.++++++||++.|++.++..+  .+|++|.+.
T Consensus       537 ~~kTkvi~~ng~NP~WnE~f~F~-v~~~el--~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G--~r~v~L~d~  606 (624)
T 1djx_A          537 SRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG--YRHVHLLSK  606 (624)
T ss_dssp             EEECCCCTTCSSSCEEEEEEEEE-ESCGGG--CEEEEEEEECCSSSCCEEEEEEEEEGGGBCCE--EEEEEEECT
T ss_pred             eeecccccCCCCCCccCceEEEE-EecCCC--CEEEEEEEEcCCCCCCceeEEEEEEHHHcCCC--cEEEeCCCC
Confidence            5799999998 999999999998 876554  47999999999999999999999999987543  369999773

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.01  E-value=1.9e-10  Score=94.01  Aligned_cols=72  Identities=21%  Similarity=0.347  Sum_probs=59.1

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-----CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-----EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-----~~~w~~L~~~   76 (174)
                      ++++|+++++|+||.|||+|.|. +...  ....|.|.|||++.++++++||.+.++++.+....     ...|++|...
T Consensus       419 ~~~~T~~~~~t~nP~w~e~f~f~-~~~~--~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~  495 (510)
T 3jzy_A          419 QSYTTRTIQDTLNPKWNFNCQFF-IKDL--YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV  495 (510)
T ss_dssp             EEEECCCCSSCSSCEEEEEEEEE-ESCT--TTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS
T ss_pred             eeccCCccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC
Confidence            46899999999999999999997 6533  34679999999999999999999999998876432     3458887643

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.00  E-value=1.3e-10  Score=94.92  Aligned_cols=76  Identities=22%  Similarity=0.385  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC-----cCceeecccCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-----EPEWFYLTKHK  159 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~-----~~~W~~L~~~~  159 (174)
                      +++|+++++++||+|||.|.|. +...  ....|.|+|||.+.++++++||++.++++++..+.     ...|++|.+. 
T Consensus       420 ~~~T~~~~~t~nP~w~e~f~f~-~~~~--~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~-  495 (510)
T 3jzy_A          420 SYTTRTIQDTLNPKWNFNCQFF-IKDL--YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV-  495 (510)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-ESCT--TTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS-
T ss_pred             eccCCccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC-
Confidence            6789999999999999999998 6533  34689999999999999999999999999986542     5689998764 


Q ss_pred             CCCCC
Q psy6192         160 NSGSN  164 (174)
Q Consensus       160 ~~~~~  164 (174)
                      ..|.+
T Consensus       496 ~~G~i  500 (510)
T 3jzy_A          496 PTGEV  500 (510)
T ss_dssp             SSCEE
T ss_pred             CCceE
Confidence            33443

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.00  E-value=3.9e-10  Score=92.74  Aligned_cols=67  Identities=18%  Similarity=0.176  Sum_probs=54.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~  156 (174)
                      ++||+++++++||+|||.|.|. +.... ....|.|+|||+|..+.+++||.+.++|..   +....|++|.
T Consensus       426 ~~kTkvik~tlNP~Wne~f~f~-~~~~~-~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~---g~~~~~~~l~  492 (540)
T 3nsj_A          426 EFRTGVVWNNNNPRWTDKMDFE-NVLLS-TGGPLRVQVWDADYGWDDDLLGSCDRSPHS---GFHEVTCELN  492 (540)
T ss_dssp             EEECCCBCSCSSCBCCCCEEEE-EEETT-TCCCEEEEEEECCSSSCCEEEEEEEECCCS---EEEEEEEECS
T ss_pred             eeeeeeecCCCCCCCCeEEEEE-EecCC-CCCEEEEEEEECCCCCCCCEEEEEEEEeeC---CcEEEEEEcC
Confidence            4799999999999999999997 53222 247899999999999999999999999872   3345677764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.96  E-value=2.1e-10  Score=96.94  Aligned_cols=73  Identities=27%  Similarity=0.614  Sum_probs=63.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      .+++|+++++++||.|||+|.|. +...+.. ..|.|.|||++..+++++||++.++++++.......|+.|...
T Consensus       209 ~k~kT~v~~~tlnP~wne~f~f~-~~~~~~~-~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~  281 (674)
T 3pfq_A          209 SKQKTKTIKSSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQ  281 (674)
T ss_dssp             SCEECCCCSSCSSCEEEEEEEEE-CCSTTTT-CEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCEEEEEECBCT
T ss_pred             ccccccccccccCCCccceeeee-cccCCcc-ceeeeEEeecccccccccccccccchhhhccCCcccceeeccc
Confidence            46899999999999999999998 7665543 5799999999999999999999999998877666679988654

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=98.95  E-value=8.7e-11  Score=95.70  Aligned_cols=68  Identities=10%  Similarity=0.301  Sum_probs=10.6

Q ss_pred             CccccccCC---CCCccccEEEeCccccCCCCcceEEEEEEeC-C---CCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          86 NLSKTLANT---NDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-T---RYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        86 ~kT~~~~~t---~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~-~---~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      .||+++++|   +||+|||.|.|. +.+.   ...|.|+|||. +   ..+++++||.+.|++.++..+ ..++||+|.+
T Consensus        41 ~kT~v~~kt~~glnP~WnE~F~f~-~~~~---~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           41 ARTTSKPRSASGDTVFWGEHFEFN-NLPA---VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             ------------------CCEECC----------------------------------------------CCEECC----
T ss_pred             eeeeEEeCCCCCCCCccccEEEEe-cCCC---ccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence            589999999   999999999998 6433   26899999994 4   367899999999999998765 5679999965

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=98.85  E-value=3.8e-10  Score=91.90  Aligned_cols=69  Identities=10%  Similarity=0.303  Sum_probs=9.0

Q ss_pred             eEeceeecCC---CCCccCceEEcCCcCcCcCCcceEEEEEEeC-C---CCCCCceEEEEEEecccccCCC-CCceEEec
Q psy6192           3 KEFAKTLANT---NDPKWNQSFFYPGIRRSDLKLRSIEITVWDY-T---RYGVNDFLGEVIIELSSSLCTD-EPEWFYLT   74 (174)
Q Consensus         3 k~rT~~~~~t---~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~-~---~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~   74 (174)
                      +.||+++++|   +||+|||+|.|. +...   ...|.|.|||. +   ..+++++||.+.+++..+.... ...|++|.
T Consensus        40 ~~kT~v~~kt~~glnP~WnE~F~f~-~~~~---~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           40 YARTTSKPRSASGDTVFWGEHFEFN-NLPA---VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             -------------------CCEECC----------------------------------------------CCEECC---
T ss_pred             EeeeeEEeCCCCCCCCccccEEEEe-cCCC---ccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence            4589999999   999999999997 5433   26799999994 4   3678999999999999887543 34599995


Q ss_pred             c
Q psy6192          75 K   75 (174)
Q Consensus        75 ~   75 (174)
                      .
T Consensus       116 ~  116 (483)
T 3bxj_A          116 L  116 (483)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.56  E-value=9.5e-08  Score=81.98  Aligned_cols=66  Identities=24%  Similarity=0.421  Sum_probs=52.4

Q ss_pred             ceEece-eec-CCCCCccCc-eEEc-CCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAK-TLA-NTNDPKWNQ-SFFY-PGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~-~~~-~t~nP~w~E-~f~f-~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      +|+||+ +++ +++||+||| +|.| . +...++.  .|+|.|||++    +++||.+.++|..+..  +..|++|...
T Consensus       712 ~k~kTk~vv~~n~~NPvWnEe~f~F~~-v~~~el~--~Lr~~V~D~d----~d~iG~~~ipl~~L~~--G~r~v~L~~~  781 (799)
T 2zkm_X          712 RRYRTKLSPSTNSINPVWKEEPFVFEK-ILMPELA--SLRVAVMEEG----NKFLGHRIIPINALNS--GYHHLCLHSE  781 (799)
T ss_dssp             CCEECCCCSSSCCSSCBCCCCCEEEEE-ESSGGGC--EEEEEEEETT----TEEEEEEEEEGGGBCC--EEEEEEEECT
T ss_pred             cceeecccccCCCCCCeeecceEEEEE-EccCCcc--EEEEEEEEeC----CCccceEeeehhhcCC--CcEEEeccCC
Confidence            367899 776 469999999 7999 6 7666654  7999999997    7999999999998753  3446777554

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.50  E-value=1.2e-07  Score=81.70  Aligned_cols=66  Identities=21%  Similarity=0.420  Sum_probs=50.4

Q ss_pred             eEeceeecC-CCCCccCc-eEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           3 KEFAKTLAN-TNDPKWNQ-SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~-t~nP~w~E-~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      |+||+++++ ++||+||| +|.|..+...++  ..|+|.|||++    +++||.+.++|..+..  +..+++|...
T Consensus       760 k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~D~d----ddfiG~~~lpL~~L~~--GyR~vpL~~~  827 (885)
T 3ohm_B          760 KYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAFEEG----GKFVGHRILPVSAIRS--GYHYVCLRNE  827 (885)
T ss_dssp             CCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEEETT----TEEEEEEEEETTTCCC--EEEEEEEECT
T ss_pred             ceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEEcCC----ccEEeeEEEEHHHcCC--CceEEEecCC
Confidence            579999976 59999999 699963444444  37999999997    7999999999997753  3335666543

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.48  E-value=2e-07  Score=79.96  Aligned_cols=66  Identities=21%  Similarity=0.292  Sum_probs=50.3

Q ss_pred             ceEeceeecC-CCCCccCce-EEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecc
Q psy6192           2 FKEFAKTLAN-TNDPKWNQS-FFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~-t~nP~w~E~-f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~   75 (174)
                      +++||+++++ ++||+|||+ |.|..+...++  ..|+|.|||++    +++||.+.++|+.+..+  ..+++|..
T Consensus       685 ~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V~D~d----ddfiG~~~ipL~~L~~G--yR~vpL~~  752 (816)
T 3qr0_A          685 KKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIVSEEN----GKFIGHRVMPLDGIKPG--YRHVPLRN  752 (816)
T ss_dssp             EEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEEEETT----SCEEEEEEEESTTCCCE--EEEEEEEC
T ss_pred             ceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEEEecC----CCeeeEEEEEHHHcCCc--ceEEEEeC
Confidence            4679999876 599999998 99953555554  47999999985    79999999999876542  33455543

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.47  E-value=1.7e-07  Score=80.49  Aligned_cols=64  Identities=23%  Similarity=0.433  Sum_probs=51.7

Q ss_pred             CCccc-cccC-CCCCcccc-EEEe-CccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSK-TLAN-TNDPKWNQ-SFFY-PGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~-~~~~-t~~P~wne-~~~f-~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++||+ ++++ +.||+||| .|.| . +..+++.  .|.|.|||.+    +++||++.|+++.+..  ..+|++|.+
T Consensus       713 k~kTk~vv~~n~~NPvWnEe~f~F~~-v~~~el~--~Lr~~V~D~d----~d~iG~~~ipl~~L~~--G~r~v~L~~  780 (799)
T 2zkm_X          713 RYRTKLSPSTNSINPVWKEEPFVFEK-ILMPELA--SLRVAVMEEG----NKFLGHRIIPINALNS--GYHHLCLHS  780 (799)
T ss_dssp             CEECCCCSSSCCSSCBCCCCCEEEEE-ESSGGGC--EEEEEEEETT----TEEEEEEEEEGGGBCC--EEEEEEEEC
T ss_pred             ceeecccccCCCCCCeeecceEEEEE-EccCCcc--EEEEEEEEeC----CCccceEeeehhhcCC--CcEEEeccC
Confidence            46898 7764 69999999 7999 7 7666654  7999999986    7899999999998754  346888876

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.47  E-value=2.5e-07  Score=79.84  Aligned_cols=65  Identities=20%  Similarity=0.425  Sum_probs=50.5

Q ss_pred             CCccccccC-CCCCcccc-EEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLAN-TNDPKWNQ-SFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~-t~~P~wne-~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|+++++ +.||+||| .|.|..+..+++  ..|.|.|||.+    +++||++.|++..+..  ..++++|.+
T Consensus       760 k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~D~d----ddfiG~~~lpL~~L~~--GyR~vpL~~  826 (885)
T 3ohm_B          760 KYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAFEEG----GKFVGHRILPVSAIRS--GYHYVCLRN  826 (885)
T ss_dssp             CCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEEETT----TEEEEEEEEETTTCCC--EEEEEEEEC
T ss_pred             ceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEEcCC----ccEEeeEEEEHHHcCC--CceEEEecC
Confidence            468999876 59999999 699962344443  47999999986    7899999999998754  345677776

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.39  E-value=4.3e-07  Score=77.88  Aligned_cols=65  Identities=20%  Similarity=0.313  Sum_probs=50.6

Q ss_pred             CCccccccC-CCCCccccE-EEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLAN-TNDPKWNQS-FFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~-t~~P~wne~-~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++||+++++ +.||+|||. |.|..+..+++  ..|.|.|||.+    +++||++.|+++.+..+  .++.+|.+
T Consensus       686 k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V~D~d----ddfiG~~~ipL~~L~~G--yR~vpL~~  752 (816)
T 3qr0_A          686 KFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIVSEEN----GKFIGHRVMPLDGIKPG--YRHVPLRN  752 (816)
T ss_dssp             EEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEEEETT----SCEEEEEEEESTTCCCE--EEEEEEEC
T ss_pred             eeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEEEecC----CCeeeEEEEEHHHcCCc--ceEEEEeC
Confidence            468998876 599999997 99962444444  47999999974    78999999999987543  45677776

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=97.97  E-value=6.5e-06  Score=54.33  Aligned_cols=65  Identities=20%  Similarity=0.249  Sum_probs=50.9

Q ss_pred             cc-ccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC------CcCceeecccCC
Q psy6192          87 LS-KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT------DEPEWFYLTKHK  159 (174)
Q Consensus        87 kT-~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~------~~~~W~~L~~~~  159 (174)
                      +| ..+++|..|+|||.|.-. +..    .+.|.|.|++...    +|+..+.|.+.++..+      ..+-|..|.|.|
T Consensus        45 ~t~~~K~kT~~P~Wne~Fd~~-V~~----Gr~l~i~Vfh~a~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~G  115 (126)
T 1yrk_A           45 KTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAAE----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQA  115 (126)
T ss_dssp             EEEECCSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEETT----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSSC
T ss_pred             eeecccCCCCCcCccceEEee-eeC----CEEEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccCc
Confidence            44 777889999999998865 432    4789999996443    8999999999998733      235899999976


Q ss_pred             C
Q psy6192         160 N  160 (174)
Q Consensus       160 ~  160 (174)
                      .
T Consensus       116 k  116 (126)
T 1yrk_A          116 K  116 (126)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=97.95  E-value=1.3e-05  Score=52.85  Aligned_cols=64  Identities=20%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             ec-eeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC----CC--CceEEecccc
Q psy6192           5 FA-KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT----DE--PEWFYLTKHT   77 (174)
Q Consensus         5 rT-~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~----~~--~~w~~L~~~~   77 (174)
                      +| .++++|..|.|||+|.-. +..    .+.|.|.|++...    +++..+.+.+.++...    .+  ..|..|++.+
T Consensus        45 ~t~~~K~kT~~P~Wne~Fd~~-V~~----Gr~l~i~Vfh~a~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~G  115 (126)
T 1yrk_A           45 KTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAAE----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQA  115 (126)
T ss_dssp             EEEECCSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEETT----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSSC
T ss_pred             eeecccCCCCCcCccceEEee-eeC----CEEEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccCc
Confidence            44 778899999999998776 443    4679999995443    9999999999987633    22  2399998865

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=97.92  E-value=7.7e-06  Score=54.71  Aligned_cols=66  Identities=23%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             Ccc-ccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC------CcCceeecccC
Q psy6192          86 NLS-KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT------DEPEWFYLTKH  158 (174)
Q Consensus        86 ~kT-~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~------~~~~W~~L~~~  158 (174)
                      .+| ..+++|..|+|||.|.-. +..    .+.|.|.|++...    +||..+.|.+.++..+      ..+-|+.|.|.
T Consensus        49 gqtl~~KkkT~~P~Wne~Fd~~-V~~----Gr~l~i~Vfh~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~  119 (138)
T 2enj_A           49 GQMYIQKKPTMYPPWDSTFDAH-INK----GRVMQIIVKGKNV----DLISETTVELYSLAERCRKNNGKTEIWLELKPQ  119 (138)
T ss_dssp             EEEEEEEEEEECCCSSSEEEEC-CCS----SCEEEEEEECSSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS
T ss_pred             ceeecccCCCCCccccceEeee-EEC----CeEEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccC
Confidence            355 667789999999998865 432    4789999995433    8999999999998733      23589999997


Q ss_pred             CC
Q psy6192         159 KN  160 (174)
Q Consensus       159 ~~  160 (174)
                      |.
T Consensus       120 Gk  121 (138)
T 2enj_A          120 GR  121 (138)
T ss_dssp             CE
T ss_pred             cE
Confidence            65

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=97.90  E-value=1.8e-05  Score=52.94  Aligned_cols=65  Identities=23%  Similarity=0.284  Sum_probs=49.4

Q ss_pred             Eec-eeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC-----CC-CceEEeccc
Q psy6192           4 EFA-KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-----DE-PEWFYLTKH   76 (174)
Q Consensus         4 ~rT-~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~-----~~-~~w~~L~~~   76 (174)
                      -+| .++++|..|.|||+|.-. +..    .+.|.|.|++...    +++..+.+.+.++...     +. ..|+.|++.
T Consensus        49 gqtl~~KkkT~~P~Wne~Fd~~-V~~----Gr~l~i~Vfh~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~  119 (138)
T 2enj_A           49 GQMYIQKKPTMYPPWDSTFDAH-INK----GRVMQIIVKGKNV----DLISETTVELYSLAERCRKNNGKTEIWLELKPQ  119 (138)
T ss_dssp             EEEEEEEEEEECCCSSSEEEEC-CCS----SCEEEEEEECSSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS
T ss_pred             ceeecccCCCCCccccceEeee-EEC----CeEEEEEEEcCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccC
Confidence            456 777889999999998876 443    4679999994443    8999999999987733     22 339999887


Q ss_pred             c
Q psy6192          77 T   77 (174)
Q Consensus        77 ~   77 (174)
                      +
T Consensus       120 G  120 (138)
T 2enj_A          120 G  120 (138)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.62  E-value=0.14  Score=37.10  Aligned_cols=56  Identities=11%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCC----CCCceEEEEEEecc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY----GVNDFLGEVIIELS   60 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~----~~~~~lG~~~~~l~   60 (174)
                      .+|.+...+.+|.|+|++... ++.+.....-|.|..++...-    .....+|.+-++|-
T Consensus        79 ~~S~V~YHnk~P~w~EtIKi~-LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           79 YKSVIYYQVKQPRWFETVKVA-IPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             EECCCCTTCSSCCCCEEEEEE-ECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             EEEEEEEcCCCCCceEeEEEe-eChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            577888888899999999998 999998888999999876532    22357888888874

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=94.47  E-value=0.13  Score=37.15  Aligned_cols=58  Identities=12%  Similarity=0.205  Sum_probs=47.7

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCC----CCceeEEEEEeCCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG----VNDFLGEVIIELSS  143 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~----~~~~iG~~~l~l~~  143 (174)
                      .++|.+...+.+|.|+|++-.. ++.......-|.++++......    ....+|...++|-.
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~-LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVA-IPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEE-ECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eEEEEEEEcCCCCCceEeEEEe-eChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            4788898999999999999998 9998888889999998765321    23478999999865

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=82.51  E-value=1.7  Score=38.10  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCc-ceEEEEEEeCCCC--C----------CCceEEEEEEecccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKL-RSIEITVWDYTRY--G----------VNDFLGEVIIELSSS   62 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~-~~L~i~v~d~~~~--~----------~~~~lG~~~~~l~~~   62 (174)
                      ..|+.+.-..+|.|||.+.|+ +...++.. ..|.|.+|+...-  +          .+..+|.+.++|-+.
T Consensus       254 ~~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          254 VSSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEEEEEEEC----------------CEEEEEEEEESBCT
T ss_pred             eecccccCCCCcccceEEEcc-cccccCCcccEEEEEEEEecCCccCccccccccccccceEEEEeeeEECC
Confidence            445555556789999999998 87777764 6788999996432  1          245899999988653

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=80.47  E-value=2.1  Score=37.60  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=40.3

Q ss_pred             ccccccCCCCCccccEEEeCccccCCC-CcceEEEEEEeCCCC--C----------CCceeEEEEEeCCcCC
Q psy6192          87 LSKTLANTNDPKWNQSFFYPGIRRSDL-KLRSIEITVWDYTRY--G----------VNDFLGEVIIELSSSL  145 (174)
Q Consensus        87 kT~~~~~t~~P~wne~~~f~~~~~~~~-~~~~l~i~v~d~~~~--~----------~~~~iG~~~l~l~~~~  145 (174)
                      .|+.+....+|.|||.+.|+ +...++ .+..|.|+||+....  +          ....||.+.+.+-+-.
T Consensus       255 ~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          255 SSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             ECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEEEEEEEC----------------CEEEEEEEEESBCTT
T ss_pred             ecccccCCCCcccceEEEcc-cccccCCcccEEEEEEEEecCCccCccccccccccccceEEEEeeeEECCc
Confidence            34444446789999999998 765554 447899999996321  1          2348999999997743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-14
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-14
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	5e-11
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-10
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-10
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-09
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-09
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-08
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-08
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-08
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-08
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	8e-08
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-08
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-08
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-07
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-07
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-07
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	9e-07
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-06
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	9e-06
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	7e-05
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-05
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-05
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-04
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	0.003
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	7e-04
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	8e-04
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	0.002
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	0.003

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 2e-14
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLC 64
           KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L 
Sbjct: 56  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 115

Query: 65  TDEPEWFYL 73
            DEP W+ L
Sbjct: 116 DDEPHWYKL 124

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 2e-14
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGV--NDFLGEVIIELSSSLC 146
           KT+  T +PKWNQ+F Y  + R + + R +EIT+WD  R     ++FLGE++IEL ++L 
Sbjct: 56  KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 115

Query: 147 TDEPEWFYL 155
            DEP W+ L
Sbjct: 116 DDEPHWYKL 124

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 5e-11
 Identities = 17/76 (22%), Positives = 37/76 (48%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           ++ L  T DP ++++F + GI  + ++  ++  T+  + R+  +D +GEV+I LS    +
Sbjct: 62  TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121

Query: 148 DEPEWFYLTKHKNSGS 163
           +              S
Sbjct: 122 EGKMLMNREIISGPSS 137

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 17/73 (23%), Positives = 36/73 (49%)

Query: 1   GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
             K   + L  T DP ++++F + GI  + ++  ++  T+  + R+  +D +GEV+I LS
Sbjct: 57  KHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116

Query: 61  SSLCTDEPEWFYL 73
               ++       
Sbjct: 117 GIELSEGKMLMNR 129

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.2 bits (127), Expect = 4e-10
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +     T +  +N+ F +  I    L+  S+E  V D  R   N+ +G +++   ++  +
Sbjct: 56  THVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGS 113

Query: 148 DEPEWFYLTKHKN 160
               W  +     
Sbjct: 114 GGGHWKEICDFPR 126

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 1e-09
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
                T +  +N+ F +  I    L+  S+E  V D  R   N+ +G +++   ++  + 
Sbjct: 57  HVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGSG 114

Query: 67  EPEWFYLTKH 76
              W  +   
Sbjct: 115 GGHWKEICDF 124

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 4e-09
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +KT+  + +P+WN++F +    +   K R + + +WD+     NDF+G +   +S     
Sbjct: 56  TKTIKCSLNPEWNETFRFQL--KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 113

Query: 148 DEPEWFYLTKHK 159
               WF L   +
Sbjct: 114 GVDGWFKLLSQE 125

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           KT+  + +P+WN++F +    +   K R + + +WD+     NDF+G +   +S      
Sbjct: 57  KTIKCSLNPEWNETFRFQL--KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 114

Query: 67  EPEWFYLTKH 76
              WF L   
Sbjct: 115 VDGWFKLLSQ 124

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLCT 65
           K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS S   
Sbjct: 69  KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD 128

Query: 66  DEPEWFYLTKHT 77
           + P W+ L + T
Sbjct: 129 NTPRWYPLKEQT 140

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS-SLC 146
           +K +  + +P+WNQ+  Y  I    L  +++E+TVWDY R+  NDFLGEV+I+LSS S  
Sbjct: 68  TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127

Query: 147 TDEPEWFYLTKHKNS 161
            + P W+ L +   S
Sbjct: 128 DNTPRWYPLKEQTES 142

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           ++    T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   +   S+   
Sbjct: 56  TQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG-ISAKGE 113

Query: 148 DEPEWFYLTKHKN 160
               W+   K+K+
Sbjct: 114 RLKHWYECLKNKD 126

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.7 bits (110), Expect = 8e-08
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K   +    T +P++N+ FFY  I+ SDL  +S++I+VWDY     ND++G   +   S+
Sbjct: 53  KHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG-ISA 110

Query: 63  LCTDEPEWFYLTKH 76
                  W+   K+
Sbjct: 111 KGERLKHWYECLKN 124

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +    NT +P +N+SF +  +    ++   + +TV DY + G ND +G+V +   +S   
Sbjct: 66  TTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY-NSTGA 123

Query: 148 DEPEWFYLTKHKNS 161
           +   W  +  +   
Sbjct: 124 ELRHWSDMLANPRR 137

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 6e-08
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
               NT +P +N+SF +  +    ++   + +TV DY + G ND +G+V +  +S+
Sbjct: 67  TIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +    NT +P +N++  +  +    ++   + I V DY   G N+ +G   +   ++   
Sbjct: 61  TSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119

Query: 148 DEPEWFYLTKHKN 160
               W  +  +  
Sbjct: 120 GREHWAEMLANPR 132

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.2 bits (106), Expect = 4e-07
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           K       NT +P +N++  +  +    ++   + I V DY   G N+ +G   +   ++
Sbjct: 58  KRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116

Query: 63  LCTDEPEWFYLTKH 76
                  W  +  +
Sbjct: 117 DPHGREHWAEMLAN 130

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 5e-07
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++    
Sbjct: 73  TKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131

Query: 148 DE-PEWFYL 155
               EW  L
Sbjct: 132 HVTEEWRDL 140

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.0 bits (103), Expect = 9e-07
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
           K    T +P +N+ F +  +  S+L  +++ + V+D+ R+  +D +GE  + +++     
Sbjct: 74  KVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132

Query: 67  E-PEWFYL 73
              EW  L
Sbjct: 133 VTEEWRDL 140

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC- 146
           +K    T +P +N++F +  +  ++L  R +  +V+D+ R+  +D +G+V+++    L  
Sbjct: 57  TKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 115

Query: 147 --TDEPEWFYLTK 157
              D P W  + +
Sbjct: 116 QPPDRPLWRDILE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC-- 64
           K    T +P +N++F +  +  ++L  R +  +V+D+ R+  +D +G+V+++    L   
Sbjct: 58  KVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 116

Query: 65  -TDEPEWFYLTK 75
             D P W  + +
Sbjct: 117 PPDRPLWRDILE 128

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 9e-06
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 1   GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
             +    T+    +P+WN+ F +P     D     +E+TV+D       DFLG+V I L 
Sbjct: 37  NDRLQTHTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL- 91

Query: 61  SSLCTDEPEWFYLTKHTLE 79
            S+   +P  + L    LE
Sbjct: 92  LSIRDGQPNCYVLKNKDLE 110

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 7e-05
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 89  KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 148
            T+    +P+WN+ F +P     D     +E+TV+D       DFLG+V I L  S+   
Sbjct: 43  HTVYKNLNPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDG 97

Query: 149 EPEWFYLTKHKNSG 162
           +P  + L       
Sbjct: 98  QPNCYVLKNKDLEQ 111

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 93  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--P 150
               P+WN++F +     +      ++  ++D      +D +GE  I L          P
Sbjct: 52  MGTTPEWNETFIFTVSEGT----TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107

Query: 151 EWFYLTKHKNS 161
             + + K +  
Sbjct: 108 TAYNVVKDEEY 118

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 13/81 (16%)

Query: 11  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE--P 68
               P+WN++F +     +      ++  ++D      +D +GE  I L          P
Sbjct: 52  MGTTPEWNETFIFTVSEGT----TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107

Query: 69  EWFYLTKH-------TLELQF 82
             + + K         + L F
Sbjct: 108 TAYNVVKDEEYKGEIWVALSF 128

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 88  SKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT 147
           +          W +    P +   +L   ++ +T+    R+  +   GE+ + L  +   
Sbjct: 63  TALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121

Query: 148 DEPE-WFYLTKHKNS 161
                W  L     S
Sbjct: 122 LGAAQWGELKTSGPS 136

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 7   KTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD 66
                     W +    P +   +L   ++ +T+    R+  +   GE+ + L  +    
Sbjct: 64  ALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL 122

Query: 67  EPE-WFYLTKH 76
               W  L   
Sbjct: 123 GAAQWGELKTS 133

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 3   KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS 62
           ++  +   N  +P WN++F +        +   +EIT+ D      ++ LG     + SS
Sbjct: 42  RKRTRHFNNDINPVWNETFEFI---LDPNQENVLEITLMDANYVM-DETLGTATFTV-SS 96

Query: 63  LCTDEP--EWFYLTKHT 77
           +   E     F   + T
Sbjct: 97  MKVGEKKEVPFIFNQVT 113

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 93  NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP-- 150
           N  +P WN++F +        +   +EIT+ D      ++ LG     + SS+   E   
Sbjct: 50  NDINPVWNETFEFI---LDPNQENVLEITLMDANYVM-DETLGTATFTV-SSMKVGEKKE 104

Query: 151 EWFYLTKHKN 160
             F   +   
Sbjct: 105 VPFIFNQVTE 114

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 96  DPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL 155
           +P+W+  F +     +   L  +   V DY     NDF+G+  I  +S          +L
Sbjct: 56  NPRWDMEFEFEV---TVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS--LKQGYRHVHL 110

Query: 156 TKHKN 160
                
Sbjct: 111 LSKNG 115

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 1   GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELS 60
           G  +  +   NTN PKW Q                +   VW +     +  LG   +++ 
Sbjct: 37  GQSKKTEKCNNTNSPKWKQPLTVIVTPV-----SKLHFRVWSHQTLKSDVLLGTAALDIY 91

Query: 61  SSLCTDEPEWFYLTKHTLELQFPLSNLSK 89
            +L ++  +        + +   L    +
Sbjct: 92  ETLKSNNMKL-----EEVVVTLQLGGDKE 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.66
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.63
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.61
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.58
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.57
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.57
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.57
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.56
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.56
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.55
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.55
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.55
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.55
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.52
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.51
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.5
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.45
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.44
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.43
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.43
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.41
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.4
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.4
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.38
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.37
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.36
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.36
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.35
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.34
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.31
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.31
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.3
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.29
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.27
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.24
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.21
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.19
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.12
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.94
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.89
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	92.42
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	91.62

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=2.3e-17  Score=110.70  Aligned_cols=78  Identities=24%  Similarity=0.526  Sum_probs=67.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc--CCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK--HKNSG  162 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~--~~~~~  162 (174)
                      +++|+++++|.||+|||.|.|. +...... ..|.|+|||++.++++++||.+.|++.++...+.++||+|.+  +|+..
T Consensus        53 ~~kT~v~~~t~nP~wne~f~f~-v~~~~~~-~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~~~~ge~~  130 (132)
T d1a25a_          53 KQKTKTIKCSLNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYF  130 (132)
T ss_dssp             CEECCCCSSCSSCEEEEEEEEE-CCSGGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEECBCHHHHTTC
T ss_pred             ccEEeeecCCCCCccceEEEEE-eEccccC-CEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCCCCeEEECCCCCCCccc
Confidence            5789999999999999999998 7654433 679999999999999999999999999987777789999987  66665


Q ss_pred             CC
Q psy6192         163 SN  164 (174)
Q Consensus       163 ~~  164 (174)
                      |+
T Consensus       131 n~  132 (132)
T d1a25a_         131 NV  132 (132)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=5.1e-17  Score=110.16  Aligned_cols=77  Identities=39%  Similarity=0.808  Sum_probs=66.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKNS  161 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~~  161 (174)
                      +++|++++++.||.|||.|.|..++..++....|.|+|||++.++++++||++.|+|.++... ...+||+|.++.++
T Consensus        65 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~~s  142 (142)
T d1rh8a_          65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTES  142 (142)
T ss_dssp             HTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCCC
T ss_pred             eeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcCCC
Confidence            478999999999999999999734555666688999999999999999999999999998766 56799999997653

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.2e-16  Score=104.08  Aligned_cols=76  Identities=14%  Similarity=0.326  Sum_probs=67.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccCCCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKHKNS  161 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~~~~  161 (174)
                      .++|++++++.||+|||.|.|. ++..++....|.|+|||.+.++++++||++.|+|.++... +.++|+.|.+.+.+
T Consensus        60 ~~kT~v~~~~~~P~wne~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~~  136 (138)
T d1wfma_          60 EAQTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS  136 (138)
T ss_dssp             EEECCCCCCCSSEECSSCEEEE-CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCSCC
T ss_pred             ceeeeEECCCCCceEeeeEEEE-eeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCCCC
Confidence            3689999999999999999999 9888888899999999999999999999999999998765 56799999885543

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=9.8e-16  Score=102.36  Aligned_cols=74  Identities=23%  Similarity=0.517  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC---CcCceeecccCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTKHK  159 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~---~~~~W~~L~~~~  159 (174)
                      +++|++++++.||+|||+|.|. ++..++....|.|+|||++.++++++||++.|++......   ....|++|.+.|
T Consensus        54 ~~kT~v~~~t~~P~wne~f~f~-v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~G  130 (130)
T d1dqva1          54 KFQTKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG  130 (130)
T ss_dssp             CEECCCCCSCSSCEEEEEEEEE-CCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS
T ss_pred             eEeceeEcCCCCeeeeeEEEEE-EchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccCC
Confidence            4789999999999999999998 8888777788999999999999999999999986543332   345799998865

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-15  Score=100.80  Aligned_cols=74  Identities=14%  Similarity=0.308  Sum_probs=65.5

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~   77 (174)
                      ++||++++++.||.|||+|.|. +..+++....|.|.|||++.++++++||++.|+|+++.... ...|++|.+..
T Consensus        60 ~~kT~v~~~~~~P~wne~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_          60 EAQTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             EEECCCCCCCSSEECSSCEEEE-CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             ceeeeEECCCCCceEeeeEEEE-eeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            4789999999999999999998 98888888899999999999999999999999999987554 44599997653

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-15  Score=100.52  Aligned_cols=72  Identities=43%  Similarity=0.888  Sum_probs=58.7

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCC--CCCceeEEEEEeCCcCCCCCcCceeecc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRY--GVNDFLGEVIIELSSSLCTDEPEWFYLT  156 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~--~~~~~iG~~~l~l~~~~~~~~~~W~~L~  156 (174)
                      +++|++++++.||+|||+|.|..+...++....|.|+|||.+..  +++++||++.|++.++......+||+|+
T Consensus        52 ~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          52 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             EEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            36899999999999999999963566777778899999999875  3466999999999999877778999985

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=2e-15  Score=100.84  Aligned_cols=74  Identities=24%  Similarity=0.494  Sum_probs=61.7

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc-CC--CCCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-CT--DEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~-~~--~~~~w~~L~~~   76 (174)
                      +++||++++++.||.|||+|.|. ++..++....|.|.|||++.++++++||++.+++.... ..  ....|++|.+.
T Consensus        53 ~~~kT~v~~~t~~P~wne~f~f~-v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          53 KKFQTKVHRKTLNPIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             SCEECCCCCSCSSCEEEEEEEEE-CCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             ceEeceeEcCCCCeeeeeEEEEE-EchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            46899999999999999999998 88888777889999999999999999999999865432 22  23349999764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=2.5e-15  Score=103.53  Aligned_cols=75  Identities=24%  Similarity=0.424  Sum_probs=64.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC-------------CCCcCc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL-------------CTDEPE  151 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~-------------~~~~~~  151 (174)
                      +++|++++++.||+|||.|.|. ++..++....|.|+|||++.++++++||++.|++.+..             ....++
T Consensus        63 ~~kT~v~~~t~nP~wne~f~F~-v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~  141 (157)
T d1uowa_          63 KKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ  141 (157)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEE
T ss_pred             ceecccccCCCCcccCCeEEEE-ecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeE
Confidence            3689999999999999999999 98888888899999999999999999999999997631             124568


Q ss_pred             eeecccCCC
Q psy6192         152 WFYLTKHKN  160 (174)
Q Consensus       152 W~~L~~~~~  160 (174)
                      ||.|.++++
T Consensus       142 Wh~L~~~~~  150 (157)
T d1uowa_         142 WHTLQVEEE  150 (157)
T ss_dssp             EEECBCHHH
T ss_pred             eEeCCCCcc
Confidence            999987543

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.5e-15  Score=102.96  Aligned_cols=72  Identities=22%  Similarity=0.429  Sum_probs=64.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~  157 (174)
                      +++|++++++.||+|||.|.|. +...++....|.|+|||++.++++++||++.|+|.++... ...+||+|+.
T Consensus        70 ~~kT~~~~~t~~P~wne~f~f~-i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          70 KFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CEECCCCTTCSSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             eEEEEEeccccCcceeeeeEEE-EEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            4689999999999999999998 8877777788999999999999999999999999998766 4569999964

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3.1e-15  Score=101.44  Aligned_cols=73  Identities=23%  Similarity=0.424  Sum_probs=63.8

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~   75 (174)
                      ++++|++++++.||.|||+|.|. +...++....|.|.|||++.++++++||.+.++|+.+.... ...|++|+.
T Consensus        69 ~~~kT~~~~~t~~P~wne~f~f~-i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          69 KKFETKVHRKTLNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             eeEEEEEeccccCcceeeeeEEE-EEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            45799999999999999999998 88777777889999999999999999999999999986544 345999964

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.2e-15  Score=100.86  Aligned_cols=72  Identities=28%  Similarity=0.583  Sum_probs=61.6

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~   75 (174)
                      .++||+++++|.||.|||+|.|. +..... ...|.|.|||++.++++++||.+.++++.+.......|++|.+
T Consensus        52 ~~~kT~v~~~t~nP~wne~f~f~-v~~~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~  123 (132)
T d1a25a_          52 SKQKTKTIKCSLNPEWNETFRFQ-LKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLS  123 (132)
T ss_dssp             SCEECCCCSSCSSCEEEEEEEEE-CCSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             cccEEeeecCCCCCccceEEEEE-eEcccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCCCCeEEECCC
Confidence            46789999999999999999998 765443 3579999999999999999999999999887655556999965

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=4e-16  Score=105.66  Aligned_cols=75  Identities=43%  Similarity=0.844  Sum_probs=64.2

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC-CCceEEecccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD-EPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~-~~~w~~L~~~~   77 (174)
                      ++||+++++++||.|||+|.|..+..+++....|.|.|||++.++++++||.+.++|+.+.... ...||+|.+.+
T Consensus        65 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             HTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             eeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            4689999999999999999997566666777889999999999999999999999999886544 45699998754

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.9e-15  Score=98.69  Aligned_cols=73  Identities=44%  Similarity=0.867  Sum_probs=59.3

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCC--CCceEEEEEEecccccCCCCCceEEec
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYG--VNDFLGEVIIELSSSLCTDEPEWFYLT   74 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~--~~~~lG~~~~~l~~~~~~~~~~w~~L~   74 (174)
                      .++||+++++++||.|||+|.|..+..+++....|.|.|||++..+  ++++||++.++|+.+.......||+|+
T Consensus        51 ~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          51 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             cccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            3578999999999999999999647777777789999999999764  456999999999998876666799984

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=8.2e-15  Score=98.74  Aligned_cols=59  Identities=20%  Similarity=0.324  Sum_probs=54.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS  144 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~  144 (174)
                      +++|++++++.||.|||.|.|. ++..++....|.|+|||++.++++++||++.|++.+.
T Consensus        53 ~~kT~~~~~t~~P~wne~f~F~-v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          53 KKKTHVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             EEECCCCCSCSSEEEEEEEEEE-CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             cccceeECCCCCCeECcEEEEE-ecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            3689999999999999999998 9888888888999999999999999999999999863

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.3e-14  Score=96.49  Aligned_cols=68  Identities=25%  Similarity=0.482  Sum_probs=59.4

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPE   69 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~   69 (174)
                      +++||+++++++||.|||+|.|..++.+++....|.|.|||++.++++++||++.++|+++...+...
T Consensus        58 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~  125 (138)
T d1ugka_          58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM  125 (138)
T ss_dssp             SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCE
T ss_pred             EeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeE
Confidence            45789999999999999999995477777777899999999999999999999999999987655544

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.8e-14  Score=96.77  Aligned_cols=71  Identities=31%  Similarity=0.619  Sum_probs=60.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      ++||++++++.||+|||.|.|. ++..++....|.|+|||.+.++++++||++.+++.++. .+.++|+.|.+
T Consensus        53 ~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~-~~~~~W~~l~~  123 (137)
T d2cm5a1          53 KHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG-ERLKHWYECLK  123 (137)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH-HHHHHHHHHHH
T ss_pred             eecCEeEcCCCCCccceEEEEE-eEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccC-cchhhhhhHhh
Confidence            4689999999999999999999 98888888899999999999999999999999998642 13345665544

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3e-15  Score=101.69  Aligned_cols=70  Identities=17%  Similarity=0.333  Sum_probs=58.8

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeec
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYL  155 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L  155 (174)
                      +++|++++++.||+|||.|.|. ++..++....|.|.|||.+.++++++||++.|+++.+...+..+|+.|
T Consensus        58 ~~kT~~~~~t~~P~wne~f~F~-v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l  127 (145)
T d1dqva2          58 KRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEM  127 (145)
T ss_dssp             CEECCCCCSCSSCEEEECCCCC-CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTS
T ss_pred             eecCEEEeCCCCceecceEEEE-EehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHH
Confidence            4689999999999999999998 988888888899999999999999999999999987643333344443

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.6e-14  Score=93.41  Aligned_cols=73  Identities=22%  Similarity=0.411  Sum_probs=60.2

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcC--ceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEP--EWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~--~W~~L~~  157 (174)
                      +++|++++++.||+|||+|.|..++..++....|.|+|||.+.++++++||++.|+|.++......  .|..+..
T Consensus        59 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~  133 (138)
T d1ugka_          59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             eEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence            368999999999999999999526667777789999999999999999999999999998665443  4544433

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1e-13  Score=93.17  Aligned_cols=58  Identities=22%  Similarity=0.336  Sum_probs=53.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS   61 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~   61 (174)
                      ++||++++++.||.|||+|.|. ++.+.+....|.|.|||++.++++++||++.+.+..
T Consensus        53 ~~kT~~~~~t~~P~wne~f~F~-v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~  110 (138)
T d1w15a_          53 KKKTHVKKCTPNAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA  110 (138)
T ss_dssp             EEECCCCCSCSSEEEEEEEEEE-CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             cccceeECCCCCCeECcEEEEE-ecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchh
Confidence            5689999999999999999998 988888888899999999999999999999999875

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.6e-14  Score=94.02  Aligned_cols=69  Identities=30%  Similarity=0.519  Sum_probs=59.1

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~~  158 (174)
                      +++|++++++.||+|||.|.|. +...  . ..|.|+|||++.++++++||++.|++.++.. +..+|+.|...
T Consensus        39 ~~~T~~~~~t~nP~wne~f~f~-v~~~--~-~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~l~~~  107 (126)
T d2ep6a1          39 RLQTHTVYKNLNPEWNKVFTFP-IKDI--H-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD-GQPNCYVLKNK  107 (126)
T ss_dssp             EEECCCCSSCSSCCCCEEEEEE-ESCT--T-CEEEEEEEEEETTEEEEECCBCEEEGGGCCS-SCCEECCCBCS
T ss_pred             EEEEEeeCCceeEEEEEEEEEE-Eecc--C-ceeEEEEEEccCCcCcceEEEEEEEHHHCCC-CCceEEEcccc
Confidence            4799999999999999999998 7643  2 6799999999999899999999999998754 44689998763

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.2e-13  Score=90.05  Aligned_cols=71  Identities=20%  Similarity=0.332  Sum_probs=58.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC-CceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE-PEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~-~~w~~L~~~   76 (174)
                      +++||+++.++.||.|||+|.|. +..  .....|.|.|||++.. .+++||.+.++|+.+..... ..|++|.+.
T Consensus        41 ~~~~T~~~~~t~nP~wne~f~f~-i~~--~~~~~L~v~V~d~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~  112 (126)
T d1rlwa_          41 SRKRTRHFNNDINPVWNETFEFI-LDP--NQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV  112 (126)
T ss_dssp             CCEECCCCTTCSSCEEEEEEEEE-ECT--TSCCEEEEEEEECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTT
T ss_pred             ceeEeeecCCCccceeceeeeec-ccC--cccCcEEEEEEECCCC-CCCeEEEEEEEHHHccCCCeEEEEEEccCC
Confidence            46799999999999999999997 643  3346799999999875 57999999999999865443 349999765

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-13  Score=90.60  Aligned_cols=70  Identities=20%  Similarity=0.352  Sum_probs=58.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC-CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT-DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~-~~~~W~~L~~~  158 (174)
                      +++|++++++.||.|||.|.|. +...  ....|.|.|||.+.. ++++||++.+++.++..+ ....||+|.+.
T Consensus        42 ~~~T~~~~~t~nP~wne~f~f~-i~~~--~~~~L~v~V~d~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~  112 (126)
T d1rlwa_          42 RKRTRHFNNDINPVWNETFEFI-LDPN--QENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV  112 (126)
T ss_dssp             CEECCCCTTCSSCEEEEEEEEE-ECTT--SCCEEEEEEEECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTT
T ss_pred             eeEeeecCCCccceeceeeeec-ccCc--ccCcEEEEEEECCCC-CCCeEEEEEEEHHHccCCCeEEEEEEccCC
Confidence            4689999999999999999998 6533  346799999998865 688999999999998766 45689999764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=2.5e-13  Score=93.25  Aligned_cols=58  Identities=29%  Similarity=0.497  Sum_probs=53.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSS   61 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~   61 (174)
                      +++|++++++.||+|||+|.|. ++..++....|.|.|||++.++++++||++.+.+..
T Consensus        63 ~~kT~v~~~t~nP~wne~f~F~-v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~  120 (157)
T d1uowa_          63 KKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS  120 (157)
T ss_dssp             EEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTC
T ss_pred             ceecccccCCCCcccCCeEEEE-ecHHHcCccEEEEEEcccCCCCCCceeEEEEEeccc
Confidence            4689999999999999999998 998888888999999999999999999999999965

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1e-13  Score=91.79  Aligned_cols=70  Identities=30%  Similarity=0.478  Sum_probs=57.7

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecc
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK   75 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~   75 (174)
                      +++++|+++++|.||.|||+|.|. +...   ...|.|.|||++.++++++||++.++|+.+... ...|+.|..
T Consensus        37 ~~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~l~~  106 (126)
T d2ep6a1          37 NDRLQTHTVYKNLNPEWNKVFTFP-IKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-QPNCYVLKN  106 (126)
T ss_dssp             TEEEECCCCSSCSSCCCCEEEEEE-ESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGCCSS-CCEECCCBC
T ss_pred             CeEEEEEeeCCceeEEEEEEEEEE-Eecc---CceeEEEEEEccCCcCcceEEEEEEEHHHCCCC-CceEEEccc
Confidence            357899999999999999999998 6532   257999999999999999999999999987543 345777643

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.37  E-value=2e-13  Score=91.55  Aligned_cols=70  Identities=24%  Similarity=0.460  Sum_probs=60.3

Q ss_pred             CccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC---cCceeecccCCC
Q psy6192          86 NLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKHKN  160 (174)
Q Consensus        86 ~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~---~~~W~~L~~~~~  160 (174)
                      .+|++++++.||+|||.|.|. +..    ...|.|+|||.+.++++++||.+.|++.++....   ...|++|.+.|+
T Consensus        52 ~~T~~~~~t~~P~Wne~f~f~-v~~----~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p~G~  124 (136)
T d1gmia_          52 GQTATKQKTNSPAWHDEFVTD-VCN----GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGK  124 (136)
T ss_dssp             EECCCCSSCSSCEEEEEEEEE-EEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSCE
T ss_pred             cEeeEEcCCCCccCccEEEEE-Eec----CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCCCcE
Confidence            579999999999999999998 753    2679999999999999999999999999987663   358999987654

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=5.1e-13  Score=88.96  Aligned_cols=70  Identities=23%  Similarity=0.346  Sum_probs=56.1

Q ss_pred             ceEeceeecC-CCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEeccc
Q psy6192           2 FKEFAKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~-t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~   76 (174)
                      +++||+++++ ++||.|||+|.|. +.....  ..|.|.|||++..+++++||++.++|+.+..  +..|++|...
T Consensus        43 ~~~~T~~v~~~~~nP~wne~f~f~-~~~~~~--~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~--g~~~~~L~~~  113 (131)
T d1qasa2          43 GSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ--GYRHVHLLSK  113 (131)
T ss_dssp             EEEECCCCSSCSSSCEEEEEEEEE-ESCGGG--CEEEEEEEECCTTTCCEEEEEEEEEGGGBCC--EEEEEEEECT
T ss_pred             EEEEEEEEecccCCceEEEEEEEE-EEcchh--ceEEEEEEEecCCCCCcEEEEEEEEEeccCC--CCEEEECCCC
Confidence            4578888764 4799999999997 655543  4799999999999999999999999997753  3458888554

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=5.4e-13  Score=88.50  Aligned_cols=67  Identities=22%  Similarity=0.480  Sum_probs=54.5

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC---CcCceeeccc
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---DEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~---~~~~W~~L~~  157 (174)
                      +++|++++ +.||+|||.|.|. +...   ...|.|+|||.+.. ++++||++.|+|+++...   ...+||+|..
T Consensus        32 k~~T~~~k-~~nP~Wne~f~f~-v~~~---~~~L~v~V~d~~~~-~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          32 KSTTIAVR-GSQPSWEQDFMFE-INRL---DLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEECCCEE-SSSCEEEEEEEEE-ECCC---SSEEEEEEEECCSS-CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEEEEec-CCCCeEEEEEEEe-eccc---cceEEEEEEeCCCc-CCcceEEEEEEehhhccCCCCCCCeeEECCc
Confidence            36777775 5699999999999 7544   26799999998876 689999999999998754   3458999976

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=7.9e-13  Score=88.51  Aligned_cols=60  Identities=35%  Similarity=0.669  Sum_probs=55.0

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSS   62 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~   62 (174)
                      .++||++++++.||.|||+|.|. ++.+++....|.|.+||++.++++++||.+.+.+...
T Consensus        52 ~~~kT~v~~~t~~P~wne~f~f~-v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~  111 (137)
T d2cm5a1          52 AKHKTQIKKKTLNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  111 (137)
T ss_dssp             CEEECCCCCSCSSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             eeecCEeEcCCCCCccceEEEEE-eEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCcccc
Confidence            45789999999999999999998 9888888889999999999999999999999999753

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.34  E-value=6.3e-13  Score=89.11  Aligned_cols=69  Identities=25%  Similarity=0.468  Sum_probs=58.6

Q ss_pred             EeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCC---CceEEecccc
Q psy6192           4 EFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDE---PEWFYLTKHT   77 (174)
Q Consensus         4 ~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~---~~w~~L~~~~   77 (174)
                      .+|+++.++.||.|||+|.|. +..    ...|.|.|||.+.++++++||.+.++|+++.....   ..|++|.+.+
T Consensus        52 ~~T~~~~~t~~P~Wne~f~f~-v~~----~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p~G  123 (136)
T d1gmia_          52 GQTATKQKTNSPAWHDEFVTD-VCN----GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEG  123 (136)
T ss_dssp             EECCCCSSCSSCEEEEEEEEE-EEE----ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSC
T ss_pred             cEeeEEcCCCCccCccEEEEE-Eec----CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCCCc
Confidence            589999999999999999997 653    35799999999999999999999999999875543   2499998653

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8e-13  Score=88.28  Aligned_cols=59  Identities=22%  Similarity=0.450  Sum_probs=51.5

Q ss_pred             CceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccC
Q psy6192           1 GFKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLC   64 (174)
Q Consensus         1 ~~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~   64 (174)
                      ++++||++++++.||.|||.|.|. +..    ...|.|.|||++.+++|++||++.++|+++..
T Consensus        37 ~~~~kT~v~~~t~nP~wne~f~f~-~~~----~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~   95 (133)
T d2nq3a1          37 GQSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQTLKSDVLLGTAALDIYETLK   95 (133)
T ss_dssp             TEEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHH
T ss_pred             CeEEeeEEEEecccEEEcceEEEE-EEe----cceeEEEEEEccCCCCCceEEEEEEEHHHhhh
Confidence            356899999999999999999998 653    24799999999999999999999999987643

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=3.3e-14  Score=96.46  Aligned_cols=60  Identities=20%  Similarity=0.344  Sum_probs=54.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEeccccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL   63 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~   63 (174)
                      ++||++++++.||.|||+|.|. ++.+++....|.|.|||++.++++++||.+.+++..+.
T Consensus        58 ~~kT~~~~~t~~P~wne~f~F~-v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          58 KRKTSIKKNTLNPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             CEECCCCCSCSSCEEEECCCCC-CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred             eecCEEEeCCCCceecceEEEE-EehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence            5789999999999999999998 98888887889999999999999999999999997653

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=1.9e-12  Score=86.11  Aligned_cols=68  Identities=25%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             CCccccccC-CCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          85 SNLSKTLAN-TNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        85 ~~kT~~~~~-t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      +++|+++++ +.||.|||+|.|. +.....  ..|.|+|||++..+++++||++.|+|+++..  ..+|++|.+
T Consensus        44 ~~~T~~v~~~~~nP~wne~f~f~-~~~~~~--~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~--g~~~~~L~~  112 (131)
T d1qasa2          44 SRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ--GYRHVHLLS  112 (131)
T ss_dssp             EEECCCCSSCSSSCEEEEEEEEE-ESCGGG--CEEEEEEEECCTTTCCEEEEEEEEEGGGBCC--EEEEEEEEC
T ss_pred             EEEEEEEecccCCceEEEEEEEE-EEcchh--ceEEEEEEEecCCCCCcEEEEEEEEEeccCC--CCEEEECCC
Confidence            367887654 4799999999998 655443  5799999999999999999999999998743  346899866

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=6.5e-12  Score=83.14  Aligned_cols=69  Identities=23%  Similarity=0.493  Sum_probs=53.9

Q ss_pred             ceEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC---CCceEEeccc
Q psy6192           2 FKEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD---EPEWFYLTKH   76 (174)
Q Consensus         2 ~k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~---~~~w~~L~~~   76 (174)
                      .+.+|.++++ .||.|||+|.|. +...   ...|.|.|||.+.. .|++||++.++|+.+....   ...|+.|...
T Consensus        31 ~k~~T~~~k~-~nP~Wne~f~f~-v~~~---~~~L~v~V~d~~~~-~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          31 VKSTTIAVRG-SQPSWEQDFMFE-INRL---DLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEECCCEES-SSCEEEEEEEEE-ECCC---SSEEEEEEEECCSS-CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEEEecC-CCCeEEEEEEEe-eccc---cceEEEEEEeCCCc-CCcceEEEEEEehhhccCCCCCCCeeEECCcc
Confidence            4677888765 599999999998 6533   35799999999876 5899999999999986432   3459999654

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.27  E-value=1.8e-12  Score=86.71  Aligned_cols=78  Identities=18%  Similarity=0.375  Sum_probs=59.9

Q ss_pred             CCcccccc-CCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCC--cCceeecccCCC-
Q psy6192          85 SNLSKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTKHKN-  160 (174)
Q Consensus        85 ~~kT~~~~-~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~--~~~W~~L~~~~~-  160 (174)
                      +++|++++ ++.||+|||.|.|. +....   ..|.|+|||.+.++++++||.+.|+|.++....  ...|+.|...++ 
T Consensus        43 ~~~t~~~~~~~~nP~Wne~f~f~-v~~~~---~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~  118 (136)
T d1wfja_          43 DQKSNVAEGMGTTPEWNETFIFT-VSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEY  118 (136)
T ss_dssp             EEECCCCTTCCSSCEEEEEEEEE-EESSC---CEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEE
T ss_pred             eEEEEEEecCCCcEEEeeEEEEE-EcCcc---ceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCcc
Confidence            35777765 58999999999998 76432   569999999999999999999999999875442  357999876443 


Q ss_pred             CCCCCc
Q psy6192         161 SGSNPT  166 (174)
Q Consensus       161 ~~~~~~  166 (174)
                      .|.+.+
T Consensus       119 ~G~i~l  124 (136)
T d1wfja_         119 KGEIWV  124 (136)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            344443

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.24  E-value=1.2e-12  Score=87.52  Aligned_cols=70  Identities=17%  Similarity=0.386  Sum_probs=55.3

Q ss_pred             ceEeceeec-CCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCC--CCceEEecc
Q psy6192           2 FKEFAKTLA-NTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTD--EPEWFYLTK   75 (174)
Q Consensus         2 ~k~rT~~~~-~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~--~~~w~~L~~   75 (174)
                      ++++|++++ +++||.|||+|.|. +...   ...|.|.|||++.+++|++||.+.++|.++....  ...|+.|..
T Consensus        42 ~~~~t~~~~~~~~nP~Wne~f~f~-v~~~---~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~  114 (136)
T d1wfja_          42 QDQKSNVAEGMGTTPEWNETFIFT-VSEG---TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK  114 (136)
T ss_dssp             CEEECCCCTTCCSSCEEEEEEEEE-EESS---CCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE
T ss_pred             eeEEEEEEecCCCcEEEeeEEEEE-EcCc---cceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC
Confidence            467888876 68999999999997 6542   2469999999999999999999999998865432  234777743

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.7e-12  Score=84.43  Aligned_cols=56  Identities=23%  Similarity=0.472  Sum_probs=50.0

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSL  145 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~  145 (174)
                      .++|++++++.||+|||.|.|. +...    ..|.|+|||++.++++++||++.++|.++.
T Consensus        39 ~~kT~v~~~t~nP~wne~f~f~-~~~~----~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~   94 (133)
T d2nq3a1          39 SKKTEKCNNTNSPKWKQPLTVI-VTPV----SKLHFRVWSHQTLKSDVLLGTAALDIYETL   94 (133)
T ss_dssp             EEECCCCSSCSSCEEEEEEEEE-ECTT----CEEEEEEEECCSSSCCEEEEEEEEEHHHHH
T ss_pred             EEeeEEEEecccEEEcceEEEE-EEec----ceeEEEEEEccCCCCCceEEEEEEEHHHhh
Confidence            3789999999999999999998 7542    579999999999999999999999998874

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=7.8e-12  Score=82.23  Aligned_cols=67  Identities=21%  Similarity=0.251  Sum_probs=54.3

Q ss_pred             CCccccccCCCCCccccEEEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCC------CcCceeecccC
Q psy6192          85 SNLSKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT------DEPEWFYLTKH  158 (174)
Q Consensus        85 ~~kT~~~~~t~~P~wne~~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~------~~~~W~~L~~~  158 (174)
                      +++|+++++|+||+|||+|.|. +..    ...|.|.|||.+    ++++|.+.+++..+...      ..+.|+.|.+.
T Consensus        41 ~~~t~~~kkT~nP~WnE~F~~~-v~~----~~~l~i~V~d~d----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~~  111 (123)
T d1bdya_          41 GKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAA----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ  111 (123)
T ss_dssp             TTBEEECSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEET----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS
T ss_pred             ceEEEEeCCCCCcccceEEEEE-Ecc----ccEEEEEEEEcc----ccccCccEEehhheeeccccCCCcccEEEeCCCC
Confidence            4679999999999999999998 653    257999999965    67999999999987532      23589999876


Q ss_pred             CC
Q psy6192         159 KN  160 (174)
Q Consensus       159 ~~  160 (174)
                      |.
T Consensus       112 Gk  113 (123)
T d1bdya_         112 AK  113 (123)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=1.1e-11  Score=81.59  Aligned_cols=66  Identities=21%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             eEeceeecCCCCCccCceEEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCC---C---CCceEEeccc
Q psy6192           3 KEFAKTLANTNDPKWNQSFFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCT---D---EPEWFYLTKH   76 (174)
Q Consensus         3 k~rT~~~~~t~nP~w~E~f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~---~---~~~w~~L~~~   76 (174)
                      +++|+++++|+||+|||+|.|. +..    ...|.|.|||+|    ++++|.+.+.+..+...   .   ...|+.|++.
T Consensus        41 ~~~t~~~kkT~nP~WnE~F~~~-v~~----~~~l~i~V~d~d----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~~  111 (123)
T d1bdya_          41 GKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAA----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ  111 (123)
T ss_dssp             TTBEEECSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEET----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS
T ss_pred             ceEEEEeCCCCCcccceEEEEE-Ecc----ccEEEEEEEEcc----ccccCccEEehhheeeccccCCCcccEEEeCCCC
Confidence            4679999999999999999997 653    357999999976    68999999999876432   1   2249999754


Q ss_pred             c
Q psy6192          77 T   77 (174)
Q Consensus        77 ~   77 (174)
                      +
T Consensus       112 G  112 (123)
T d1bdya_         112 A  112 (123)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4e-09  Score=68.80  Aligned_cols=61  Identities=25%  Similarity=0.453  Sum_probs=43.6

Q ss_pred             ccccCCCCCccccE-EEeCccccCCCCcceEEEEEEeCCCCCCCceeEEEEEeCCcCCCCCcCceeeccc
Q psy6192          89 KTLANTNDPKWNQS-FFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTK  157 (174)
Q Consensus        89 ~~~~~t~~P~wne~-~~f~~~~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~l~l~~~~~~~~~~W~~L~~  157 (174)
                      .+..++.||+|||. |.|..+...+  ...|.|.|||.+    +++||++.++++.+.  ...+|.+|.+
T Consensus        42 ~~~~n~~nP~wne~~~~~~~~~~~~--l~~L~f~V~D~d----~~~lG~~~ipl~~l~--~GyR~vpL~~  103 (122)
T d2zkmx2          42 SPSTNSINPVWKEEPFVFEKILMPE--LASLRVAVMEEG----NKFLGHRIIPINALN--SGYHHLCLHS  103 (122)
T ss_dssp             CSSSCCSSCBCCCCCEEEEEESSGG--GCEEEEEEEETT----TEEEEEEEEEGGGBC--CEEEEEEEEC
T ss_pred             EEeCCeecceEcccEeEEEecCCCc--ccEEEEEEECCC----CCEEEEEEEEcccCc--CCceEEEccC
Confidence            34577899999975 4442123333  357999999975    789999999998763  3456788866

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=9.5e-10  Score=71.89  Aligned_cols=67  Identities=24%  Similarity=0.418  Sum_probs=45.8

Q ss_pred             eEecee--ecCCCCCccCce-EEcCCcCcCcCCcceEEEEEEeCCCCCCCceEEEEEEecccccCCCCCceEEecccc
Q psy6192           3 KEFAKT--LANTNDPKWNQS-FFYPGIRRSDLKLRSIEITVWDYTRYGVNDFLGEVIIELSSSLCTDEPEWFYLTKHT   77 (174)
Q Consensus         3 k~rT~~--~~~t~nP~w~E~-f~f~~v~~~~~~~~~L~i~v~d~~~~~~~~~lG~~~~~l~~~~~~~~~~w~~L~~~~   77 (174)
                      +++|++  ..+++||.|||. |.|..+...++  ..|+|.|||++    +++||++.++|+.+.  .+..+.+|.+..
T Consensus        36 ~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~D~d----~~~lG~~~ipl~~l~--~GyR~vpL~~~~  105 (122)
T d2zkmx2          36 RYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVMEEG----NKFLGHRIIPINALN--SGYHHLCLHSES  105 (122)
T ss_dssp             CEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEEETT----TEEEEEEEEEGGGBC--CEEEEEEEECTT
T ss_pred             cEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEEECCC----CCEEEEEEEEcccCc--CCceEEEccCCC
Confidence            344444  478899999975 44421333333  47999999986    799999999998764  334566775543