Psyllid ID: psy6193

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MCLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIMRKIEADMMFEDKRPKLERGTTKSSKL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccHHHccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MCLTEGMVTSMAQTnadiipdlshltlEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQwinkgmnstpqGDAIMRKIEADMMfedkrpklergttksskl
Flexible Loop (DISEMBL)
MCLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSktgqwinkgmnstpqgDAIMRKIEADMMfedkrpklergttksskl
Low Complexity Region (SEG)
MCLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIMRKIEADMMFEDKRPKLERGTTKSSKL
Disordered region (IsUnstruct)
*****************IIPDLSHLTLEE*QII**************LEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWIN***************************************
Disordered Region (DISOPRED)
**********************SHLTLEERQIIESV*******************QVYLMVIWVCILCRK****************************************************
Disordered Region (DISEMBL)
MCLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVM*********ELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIMRKIEADMMFEDKRP************
Disordered Region (DISPRO)
*******************PDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWINK**************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIMRKIEADMMFEDKRPKLERGTTKSSKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q9UQ26	1411	Regulating synaptic membr	yes	N/A	0.459	0.039	0.431	6e-07
Q9JIS1	1555	Regulating synaptic membr	yes	N/A	0.336	0.026	0.534	6e-06
Q22366	1563	Rab-3-interacting molecul	yes	N/A	0.344	0.026	0.5	2e-05
Q9EQZ7	1530	Regulating synaptic membr	no	N/A	0.434	0.034	0.418	5e-05
Q9JIR4	1615	Regulating synaptic membr	no	N/A	0.303	0.022	0.432	0.0006
Q86UR5	1692	Regulating synaptic membr	no	N/A	0.237	0.017	0.531	0.0007
Q99NE5	1463	Regulating synaptic membr	no	N/A	0.303	0.025	0.432	0.0007

>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein 2 OS=Homo sapiens GN=RIMS2 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 61  VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGD-AIMRKIEADMMFEDKRPKLERGT 116
           V+WVC LCRK+QE+L+K+G W  N G N+  Q D  ++R +  +   ++K+PKL   T
Sbjct: 161 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKVLRGLRNEEAPQEKKPKLHEQT 218

Rab effector involved in exocytosis. May act as scaffold protein.
Homo sapiens (taxid: 9606)

>sp|Q9JIS1|RIMS2_RAT Regulating synaptic membrane exocytosis protein 2 OS=Rattus norvegicus GN=Rims2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMV 61
          +PDLSHLT EER+II++VM RQK+EEE+E  +++   Q + M 
Sbjct: 26 MPDLSHLTEEERKIIQAVMDRQKKEEEKEQSVLKKLHQQFEMY 68

Rab effector involved in exocytosis. May act as scaffold protein.

Rattus norvegicus (taxid: 10116)

>sp|Q22366|RIM_CAEEL Rab-3-interacting molecule unc-10 OS=Caenorhabditis elegans GN=unc-10 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 15 NADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQ 56
          +  ++PDLSHL+ EER+IIE+V  RQK EE +E +I + A +
Sbjct: 3  DPSMMPDLSHLSAEEREIIENVFKRQKDEEAKETQISQKASE 44

Regulates the efficiency of a post-docking step of the release pathway. Acts after vesicle docking likely via regulating priming. May regulate the conformational changes in syntaxin. Binding of vesicles via rab-3[GTP] to Rim may signal the presence of a docked synaptic vesicle. Rim may then signal to unc-13 to change the conformation of syntaxin from the closed to the open state. Syntaxin could then engage synaptobrevin on the docked vesicle to form SNARE complexes and to prime the vesicle for release. Not required for the development or the structural organization of synapses.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus GN=Rims2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 61  VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGD-AIMRKIEADMMFEDKRPKLE 113
           V+WVC LCRK+QE+L+K+G W  N G N+  Q D  + R +  +   ++K+ KL 
Sbjct: 170 VMWVCNLCRKQQEILTKSGAWFYNSGSNTLQQPDQKVPRGLRNEEAPQEKKAKLH 224

Rab effector involved in exocytosis. May act as scaffold protein.

Mus musculus (taxid: 10090)

>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus norvegicus GN=Rims1 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 60  MVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIM 96
           +V+WVC LCRK+QE+L+K+G W        P  D  +
Sbjct: 180 VVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTL 216

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Rattus norvegicus (taxid: 10116)

>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens GN=RIMS1 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 3/32 (9%)

Query: 60  MVIWVCILCRKKQELLSKTGQWINKGMNSTPQ 91
           +V+WVC LCRK+QE+L+K+G W      S PQ
Sbjct: 157 VVMWVCNLCRKQQEILTKSGAWF---FGSGPQ 185

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Homo sapiens (taxid: 9606)

>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein 1 OS=Mus musculus GN=Rims1 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 60  MVIWVCILCRKKQELLSKTGQWINKGMNSTPQGDAIM 96
           +V+WVC LCRK+QE+L+K+G W        P  D  +
Sbjct: 180 VVMWVCNLCRKQQEILTKSGAWFFGSGPQQPSQDGTL 216

Rab effector involved in exocytosis. May act as scaffold protein that regulates neurotransmitter release at the active zone. Essential for maintaining normal probability of neurotransmitter release and for regulating release during short-term synaptic plasticity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
195348985	2819	GM15331 [Drosophila sechellia] gi|194122	0.836	0.036	0.359	4e-17
242020225	356	rab3 interacting molecule, putative [Ped	0.819	0.280	0.372	3e-16
345494657	1325	PREDICTED: regulating synaptic membrane	0.836	0.076	0.377	4e-16
386765995	2798	Rim, isoform F [Drosophila melanogaster]	0.836	0.036	0.353	5e-15
386765989	2792	Rim, isoform P [Drosophila melanogaster]	0.836	0.036	0.353	5e-15
195570025	2270	GD20205 [Drosophila simulans] gi|1941989	0.836	0.044	0.353	5e-15
195497494	2337	GE25240 [Drosophila yakuba] gi|194182225	0.836	0.043	0.353	7e-15
195389859	2919	GJ23976 [Drosophila virilis] gi|19415167	0.836	0.034	0.353	7e-15
442619701	2595	Rim, isoform W [Drosophila melanogaster]	0.836	0.039	0.353	8e-15
195107389	2883	GI23883 [Drosophila mojavensis] gi|19391	0.836	0.035	0.353	8e-15

>gi|195348985|ref|XP_002041027.1| GM15331 [Drosophila sechellia] gi|194122632|gb|EDW44675.1| GM15331 [Drosophila sechellia]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQEEER---------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQEEE+               E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAAQQDGFIRRIEPDGSSDISQHPIVDPHDATDKRPKLERTRSAAEK 176

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020225|ref|XP_002430556.1| rab3 interacting molecule, putative [Pediculus humanus corporis] gi|212515720|gb|EEB17818.1| rab3 interacting molecule, putative [Pediculus humanus corporis]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 81/177 (45%), Gaps = 77/177 (43%)

Query: 20  PDLSHLTLEERQIIESVMM---------------------------RQKQEEERELEI-M 51
           PDLSHLT EERQIIE VMM                           RQ+ E++++  I +
Sbjct: 5   PDLSHLTEEERQIIEKVMMRQKQEEERENEIMRRKQDEVQVLEETIRQRSEQQKKAGIEL 64

Query: 52  RSACQVYLM--------------------------------VIWVCILCRKKQELLSKTG 79
            + C + L                                 VIWVCI+CRKKQELLSKTG
Sbjct: 65  DATCHICLKTKFADGVGHICNYCSIRCCARCGGKVTLRSNKVIWVCIVCRKKQELLSKTG 124

Query: 80  QWINKGMNSTPQGDAIMRKIEAD-------MMFE--------DKRPKLERGTTKSSK 121
           QWINKG+  T   D++M KI+AD       MM E        DKRPKLER  + + K
Sbjct: 125 QWINKGLGGTH--DSVMSKIQADLNQQQFPMMNENLQQSLNIDKRPKLERAHSAAEK 179

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494657|ref|XP_001604596.2| PREDICTED: regulating synaptic membrane exocytosis protein 2-like [Nasonia vitripennis]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 66/175 (37%), Positives = 80/175 (45%), Gaps = 73/175 (41%)

Query: 19  IPDLSHLTLEERQIIESVMMRQKQEEERELEI----------------------MRSA-- 54
           +PDLSHLT EER+ IESVMMRQKQEEE + EI                      ++SA  
Sbjct: 4   MPDLSHLTPEERRHIESVMMRQKQEEEHQNEIMRRKQNEVQVLEDTITRARTERLKSAEV 63

Query: 55  -----CQVYLM--------------------------------VIWVCILCRKKQELLSK 77
                CQ+ L                                 VIWVCILCRKKQELLSK
Sbjct: 64  DLDKTCQICLKTKFADGVGHICNYCNVRCCARCSGKVSLRSNKVIWVCILCRKKQELLSK 123

Query: 78  TGQWINKGMNSTPQGDAIMRKIEADM-----------MFEDKRPKLERGTTKSSK 121
           +GQWI K  N      A++R+++ DM              DKRPKLER  + + K
Sbjct: 124 SGQWIMKS-NLGGADSAMLRRMQEDMQGVLPPGLLVDQTHDKRPKLERAHSAAEK 177

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386765995|ref|NP_001247163.1| Rim, isoform F [Drosophila melanogaster] gi|386766005|ref|NP_001247168.1| Rim, isoform K [Drosophila melanogaster] gi|383292779|gb|AFH06481.1| Rim, isoform F [Drosophila melanogaster] gi|383292784|gb|AFH06486.1| Rim, isoform K [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQ-EEER--------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQ EE++              E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAAQQDGFIRRIEPDGSSDISQHPIVDPHDTTDKRPKLERTRSAAEK 176

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386765989|ref|NP_001247160.1| Rim, isoform P [Drosophila melanogaster] gi|383292776|gb|AFH06478.1| Rim, isoform P [Drosophila melanogaster]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQ-EEER--------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQ EE++              E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAAQQDGFIRRIEPDGSSDISQHPIVDPHDTTDKRPKLERTRSAAEK 176

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195570025|ref|XP_002103009.1| GD20205 [Drosophila simulans] gi|194198936|gb|EDX12512.1| GD20205 [Drosophila simulans]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQ-EEER--------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQ EE++              E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAAQQDGFIRRIEPDGSSDISQHPIVDPHDTTDKRPKLERTRSAAEK 176

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497494|ref|XP_002096124.1| GE25240 [Drosophila yakuba] gi|194182225|gb|EDW95836.1| GE25240 [Drosophila yakuba]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQ-EEER--------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQ EE++              E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAAQQDGFIRRIEPDGSSDISQHPIVDPHDTTDKRPKLERTRSAAEK 176

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195389859|ref|XP_002053591.1| GJ23976 [Drosophila virilis] gi|194151677|gb|EDW67111.1| GJ23976 [Drosophila virilis]

 Score = 84.3 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQ-EEER--------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQ EE++              E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAVQQDGFIRRIEPDGSSDISQQAIVDPHDTTDKRPKLERTRSAAEK 176

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442619701|ref|NP_001247169.2| Rim, isoform W [Drosophila melanogaster] gi|440217565|gb|AFH06487.2| Rim, isoform W [Drosophila melanogaster]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQ-EEER--------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQ EE++              E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAAQQDGFIRRIEPDGSSDISQHPIVDPHDTTDKRPKLERTRSAAEK 176

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195107389|ref|XP_001998296.1| GI23883 [Drosophila mojavensis] gi|193914890|gb|EDW13757.1| GI23883 [Drosophila mojavensis]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/178 (35%), Positives = 79/178 (44%), Gaps = 76/178 (42%)

Query: 17  DIIPDLSHLTLEERQIIESVMMRQKQ-EEER--------------ELEI----------- 50
           D +PDLSHLT  ER  IE+V+MRQKQ EE++              E++I           
Sbjct: 2   DEMPDLSHLTPHERMQIENVLMRQKQEEEKQNEIMRRKQDEVVTLEMQIRQRSEQQKKAG 61

Query: 51  --MRSACQVYLM--------------------------------VIWVCILCRKKQELLS 76
             + + C + L                                 VIWVCILCRKKQELLS
Sbjct: 62  VELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVTLRSNKVIWVCILCRKKQELLS 121

Query: 77  KTGQWINKGMNSTPQGDAIMRKIEADMMFE-------------DKRPKLERGTTKSSK 121
           KTGQWINK   +  Q D  +R+IE D   +             DKRPKLER  + + K
Sbjct: 122 KTGQWINK---TAVQQDGFIRRIEPDGSSDISQQAIVDPRDSADKRPKLERTRSAAEK 176

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
UNIPROTKB|E9PFB6	1111	RIMS2 "Regulating synaptic mem	0.459	0.050	0.431	7.2e-16
UNIPROTKB|D4ABU5	1292	Rims2 "Regulating synaptic mem	0.459	0.043	0.413	2.7e-15
RGD|620001	1555	Rims2 "regulating synaptic mem	0.459	0.036	0.413	4.1e-15
UNIPROTKB|F1LNC5	1555	Rims2 "Regulating synaptic mem	0.459	0.036	0.413	4.1e-15
UNIPROTKB|Q9JIS1	1555	Rims2 "Regulating synaptic mem	0.459	0.036	0.413	4.1e-15
UNIPROTKB|D4AEJ9	1557	Rims2 "Regulating synaptic mem	0.459	0.035	0.413	4.1e-15
UNIPROTKB|J9NYS3	1611	RIMS2 "Uncharacterized protein	0.426	0.032	0.425	2.4e-14
MGI|MGI:2152972	1530	Rims2 "regulating synaptic mem	0.426	0.033	0.425	1.4e-13
ZFIN|ZDB-GENE-090313-203	1172	si:dkey-179o14.1 "si:dkey-179o	0.327	0.034	0.5	5.4e-13
UNIPROTKB|Q9UQ26	1411	RIMS2 "Regulating synaptic mem	0.459	0.039	0.431	6.2e-13

UNIPROTKB|E9PFB6 RIMS2 "Regulating synaptic membrane exocytosis protein 2" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKLERGT 116
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D  ++R +  +   ++K+PKL   T
Sbjct:   130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKVLRGLRNEEAPQEKKPKLHEQT 187

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

UNIPROTKB|D4ABU5 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKLERGT 116
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D   +R + ++   ++K+ KL   T
Sbjct:   130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKALRGLRSEEAPQEKKAKLHEQT 187

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|620001 Rims2 "regulating synaptic membrane exocytosis 2" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKLERGT 116
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D   +R + ++   ++K+ KL   T
Sbjct:   130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKALRGLRSEEAPQEKKAKLHEQT 187

GO:0005515 "protein binding" evidence=IPI

GO:0006887 "exocytosis" evidence=TAS

GO:0017156 "calcium ion-dependent exocytosis" evidence=ISO

GO:0017157 "regulation of exocytosis" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=IDA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0030073 "insulin secretion" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

GO:0044325 "ion channel binding" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=ISO

GO:2000300 "regulation of synaptic vesicle exocytosis" evidence=IMP

UNIPROTKB|F1LNC5 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKLERGT 116
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D   +R + ++   ++K+ KL   T
Sbjct:   130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKALRGLRSEEAPQEKKAKLHEQT 187

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9JIS1 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKLERGT 116
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D   +R + ++   ++K+ KL   T
Sbjct:   130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKALRGLRSEEAPQEKKAKLHEQT 187

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IEA

UNIPROTKB|D4AEJ9 Rims2 "Regulating synaptic membrane exocytosis protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKLERGT 116
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D   +R + ++   ++K+ KL   T
Sbjct:   130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKALRGLRSEEAPQEKKAKLHEQT 187

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NYS3 RIMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 23/54 (42%), Positives = 37/54 (68%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKL 112
             V+WVC LCRK+QE+L+K+G W  N G N++ Q D  I+R +  +   ++K+ K+
Sbjct:   130 VMWVCNLCRKQQEILTKSGAWFYNSGSNTSQQPDQKILRGLRNEEAPQEKKAKV 183

GO:0046872 "metal ion binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:2152972 Rims2 "regulating synaptic membrane exocytosis 2" [Mus musculus (taxid:10090)]

 Score = 113 (44.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKL 112
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D  + R +  +   ++K+ KL
Sbjct:   170 VMWVCNLCRKQQEILTKSGAWFYNSGSNTLQQPDQKVPRGLRNEEAPQEKKAKL 223

GO:0005515 "protein binding" evidence=IPI

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IDA

GO:0017157 "regulation of exocytosis" evidence=IMP

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0019933 "cAMP-mediated signaling" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030073 "insulin secretion" evidence=IMP;IDA

GO:0042391 "regulation of membrane potential" evidence=IDA

GO:0043005 "neuron projection" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0044325 "ion channel binding" evidence=IDA

GO:0045202 "synapse" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048791 "calcium ion-dependent exocytosis of neurotransmitter" evidence=IGI

GO:2000300 "regulation of synaptic vesicle exocytosis" evidence=ISO

ZFIN|ZDB-GENE-090313-203 si:dkey-179o14.1 "si:dkey-179o14.1" [Danio rerio (taxid:7955)]

 Score = 109 (43.4 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
 Identities = 20/40 (50%), Positives = 33/40 (82%)

Query:    19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVY 58
             +PDLSHLT EER++I +VM+RQ++EEE+E  ++++  Q +
Sbjct:    23 MPDLSHLTEEERKVIMAVMVRQREEEEKEQAMLKTLHQQF 62

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9UQ26 RIMS2 "Regulating synaptic membrane exocytosis protein 2" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query:    61 VIWVCILCRKKQELLSKTGQWI-NKGMNSTPQGDA-IMRKIEADMMFEDKRPKLERGT 116
             V+WVC LCRK+QE+L+K+G W  N G N+  Q D  ++R +  +   ++K+PKL   T
Sbjct:   161 VMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKVLRGLRNEEAPQEKKPKLHEQT 218

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
KOG3799|consensus	169		99.92
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	99.9

>KOG3799|consensus

Probab=99.92  E-value=2.3e-25  Score=170.90  Aligned_cols=99  Identities=43%  Similarity=0.791  Sum_probs=87.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh----------------------------hhccc--------
Q psy6193          16 ADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSA----------------------------CQVYL--------   59 (122)
Q Consensus        16 ~~e~pdLS~LTeeEreiIl~VL~Rdk~le~~E~eRirrL----------------------------C~~C~--------   59 (122)
                      |.+||||||||+.||-.|.+|+.|++.++.++.+++++.                            |+||+        
T Consensus         1 ~~~~~d~sh~T~he~~qik~vf~rqk~ee~kq~ei~~~~~~e~~el~~Qi~erkEqqKKaGv~ddatC~IC~KTKFADG~   80 (169)
T KOG3799|consen    1 MDEMPDLSHLTPHERMQIKEVFIRQKIEEHKQFEIYKEQVKEMGELSQQIQERKEQQKKAGVGDDATCGICHKTKFADGC   80 (169)
T ss_pred             CccccchhhcCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcCcchhhhhhccccccc
Confidence            578999999999999999999999999999887765433                            66666        


Q ss_pred             ------------------------ccccccchhhhhhhHhhhcccccccCCCCCC-CCccc-cccccccCCCccccchhh
Q psy6193          60 ------------------------MVIWVCILCRKKQELLSKTGQWINKGMNSTP-QGDAI-MRKIEADMMFEDKRPKLE  113 (122)
Q Consensus        60 ------------------------k~~W~C~vC~k~~eL~~kSGeWFye~~~~~~-~~~~~-~r~~~~~~~~~dk~~kl~  113 (122)
                                              |++|+|++|+++++|+++||.|||++++.+| ++|.. +|+++.+..|+||+|||-
T Consensus        81 GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~sgs~~~~~pd~~v~~~~~~~~~p~~k~p~~~  160 (169)
T KOG3799|consen   81 GHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKVLRGLRNEEAPQEKKPKLH  160 (169)
T ss_pred             CcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHhcCCCCCCCcccccccchhcccCCcccccchh
Confidence                                    6899999999999999999999999999877 55544 999999999999999985


Q ss_pred             c
Q psy6193         114 R  114 (122)
Q Consensus       114 ~  114 (122)
                      .
T Consensus       161 ~  161 (169)
T KOG3799|consen  161 E  161 (169)
T ss_pred             h
Confidence            4

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=99.90  E-value=3.2e-24  Score=154.90  Aligned_cols=63  Identities=40%  Similarity=0.730  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------------hhccc-------------------
Q psy6193          23 SHLTLEERQIIESVMMRQKQEEERELEIMRSA------------------------CQVYL-------------------   59 (122)
Q Consensus        23 S~LTeeEreiIl~VL~Rdk~le~~E~eRirrL------------------------C~~C~-------------------   59 (122)
                      ||||++||++|++||+||++++++|++||++|                        |++|.                   
T Consensus         1 s~Lt~eE~~~I~~Vl~R~~~l~~~E~~Ri~kLk~~L~~e~~r~~~~~~~~~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~   80 (118)
T PF02318_consen    1 SHLTEEEREIILQVLQRDEELRKKEEERIRKLKQELQKEKMRREALGNSQKYGERHCARCGKPFGFLFNRGRVCVDCKHR   80 (118)
T ss_dssp             TTS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSTTHCCSB-TTTS-BCSCTSTTCEEETTTTEE
T ss_pred             CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhhCCcccccCCCCCcCCcCCcc
Confidence            89999999999999999999999999999887                        55544                   


Q ss_pred             -----------ccccccchhhhhhhHhhhcccccccC
Q psy6193          60 -----------MVIWVCILCRKKQELLSKTGQWINKG   85 (122)
Q Consensus        60 -----------k~~W~C~vC~k~~eL~~kSGeWFye~   85 (122)
                                 +..|+|++|++.++|+++||+|||++
T Consensus        81 VC~~C~~~~~~~~~WlC~vC~k~rel~~~sG~Wf~~~  117 (118)
T PF02318_consen   81 VCKKCGVYSKKEPIWLCKVCQKQRELKKKSGEWFYEE  117 (118)
T ss_dssp             EETTSEEETSSSCCEEEHHHHHHHHHHHHCSHHHHCC
T ss_pred             ccCccCCcCCCCCCEEChhhHHHHHHHHHhhhHHhcc
Confidence                       46999999999999999999999986

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-08
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	3e-04

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 20 PDLSHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIW--------VCILCRKK 71
               LT EE++II  V+ R ++ E  E E +         +           CILC ++
Sbjct: 5  RKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQ 64

Query: 72 QELLSKTG 79
            +L    
Sbjct: 65 LGMLGSAS 72

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 20 PDLSHLTLEERQIIESVMMRQKQEEERELEIMR 52
           DLS LT EE + + +V+ R      RE E ++
Sbjct: 12 LDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQ 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	99.94
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.93
3bc1_B	59	Synaptotagmin-like protein 2; RAB27, GTPase, RAB,	99.46
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	96.42
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	91.23

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=99.94  E-value=8.9e-28  Score=181.27  Aligned_cols=78  Identities=23%  Similarity=0.320  Sum_probs=64.5

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------------hhccc-------
Q psy6193          11 MAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSA------------------------CQVYL-------   59 (122)
Q Consensus        11 ~~~~~~~e~pdLS~LTeeEreiIl~VL~Rdk~le~~E~eRirrL------------------------C~~C~-------   59 (122)
                      .++.+|+++||||||||+||++|++||+||++++++|++||++|                        |++|+       
T Consensus         3 ~~~~~m~~~~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~   82 (153)
T 2zet_C            3 SGSSGMGKRLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLL   82 (153)
T ss_dssp             --------CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCS
T ss_pred             CCCCCCccCCCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCcccccc
Confidence            34567889999999999999999999999999999999999776                        55555       


Q ss_pred             -----------------------ccccccchhhhhhhHhhhcccccccCCCC
Q psy6193          60 -----------------------MVIWVCILCRKKQELLSKTGQWINKGMNS   88 (122)
Q Consensus        60 -----------------------k~~W~C~vC~k~~eL~~kSGeWFye~~~~   88 (122)
                                             +++|+|++|++.++|+++||+|||++.++
T Consensus        83 ~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~rel~~kSGeWf~~~~~~  134 (153)
T 2zet_C           83 NSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARVVKIGSLEWYYQHVRA  134 (153)
T ss_dssp             SCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred             CCCCcCCCCCchhhcccccccCCCCcEeeHHHHHHHHHHHhccHHHHHHHHh
Confidence                                   46999999999999999999999998665

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1

Probab=99.93  E-value=7.1e-27  Score=172.96  Aligned_cols=73  Identities=27%  Similarity=0.556  Sum_probs=62.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------hhccc--------------------
Q psy6193          18 IIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRSA------------------CQVYL--------------------   59 (122)
Q Consensus        18 e~pdLS~LTeeEreiIl~VL~Rdk~le~~E~eRirrL------------------C~~C~--------------------   59 (122)
                      ..||||||||+||++|++||+||++++++|++||++|                  |++|+                    
T Consensus         3 ~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~V   82 (134)
T 1zbd_B            3 HMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNV   82 (134)
T ss_dssp             -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred             CCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCccccccCCCcccccCCCCCCCCCCccc
Confidence            4799999999999999999999999999999999888                  55555                    


Q ss_pred             -------------ccccccchhhhhhhHhhhcccccccCCCCCC
Q psy6193          60 -------------MVIWVCILCRKKQELLSKTGQWINKGMNSTP   90 (122)
Q Consensus        60 -------------k~~W~C~vC~k~~eL~~kSGeWFye~~~~~~   90 (122)
                                   +++|+|++|+++++|+++||+|||++.++..
T Consensus        83 C~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~~~k~~  126 (134)
T 1zbd_B           83 CTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQV  126 (134)
T ss_dssp             ETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSCCCCC
T ss_pred             ccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhcCcccc
Confidence                         2599999999999999999999999998754

>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}

Probab=99.46  E-value=5e-14  Score=92.71  Aligned_cols=57  Identities=23%  Similarity=0.338  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccccccchhhhhhhHhhhcccccccCCCCC
Q psy6193          23 SHLTLEERQIIESVMMRQKQEEERELEIMRSACQVYLMVIWVCILCRKKQELLSKTGQWINKGMNST   89 (122)
Q Consensus        23 S~LTeeEreiIl~VL~Rdk~le~~E~eRirrLC~~C~k~~W~C~vC~k~~eL~~kSGeWFye~~~~~   89 (122)
                      ++||++|++.||+||+||..++..|++||++|     +.. +    +..+.++++||+|||+.+++-
T Consensus         1 ~~l~e~E~~~IL~VL~RD~~lr~~ee~RIrkL-----k~~-l----~~~~~~k~~sg~Wf~e~k~~r   57 (59)
T 3bc1_B            1 GSPEFEEQEAIMKVLQRDAALKRAEEERVRHL-----PEK-I----KDDQQLKNMSGQWFYEAKAKR   57 (59)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG-----GGT-C----CCHHHHHHHHTGGGGC-----
T ss_pred             CCCCHHHHHHHHHHHhhHHHHhhChHHHHHHH-----HHH-h----ccHHHhccccchhhHHHhhhc
Confidence            46899999999999999999999999999999     221 1    567889999999999998653

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=96.42  E-value=0.00051  Score=45.42  Aligned_cols=14  Identities=71%  Similarity=1.474  Sum_probs=12.7

Q ss_pred             ccccccchhhhhhh
Q psy6193          60 MVIWVCILCRKKQE   73 (122)
Q Consensus        60 k~~W~C~vC~k~~e   73 (122)
                      +++|+|++|+++||
T Consensus        49 k~~WvC~lC~k~qe   62 (62)
T 2a20_A           49 KVMWVCNLCRKQQE   62 (62)
T ss_dssp             CEEEEEHHHHHHTC
T ss_pred             eEEEEehhhhhccC
Confidence            68999999999985

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.23  E-value=0.034  Score=37.76  Aligned_cols=14  Identities=21%  Similarity=0.650  Sum_probs=11.9

Q ss_pred             ccccccchhhhhhh
Q psy6193          60 MVIWVCILCRKKQE   73 (122)
Q Consensus        60 k~~W~C~vC~k~~e   73 (122)
                      ...|+|+||.+++|
T Consensus        62 ~~~W~C~VC~k~~e   75 (76)
T 2csz_A           62 NGTWRCKVCSGPSS   75 (76)
T ss_dssp             TTCEEEHHHHSSCC
T ss_pred             CCCEEEeeCchhhc
Confidence            56999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1zbdb_	124	g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat	2e-05

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 51/113 (45%)

Query: 25  LTLEERQIIESVMMRQKQEEERELEIMRSACQVYLM------------------------ 60
           LT EE++II  V+ R ++ E  E E +                                 
Sbjct: 3   LTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLG 62

Query: 61  ---------------------------VIWVCILCRKKQELLSKTGQWINKGM 86
                                       +W+C +C +++E+  ++G W  KG 
Sbjct: 63  SASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGF 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	99.78

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.8e-20  Score=131.70  Aligned_cols=67  Identities=30%  Similarity=0.613  Sum_probs=59.0

Q ss_pred             CCCHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------hhccc--------------------------
Q psy6193          24 HLTLEERQIIESVMMRQKQEEERELEIMRSA------------------CQVYL--------------------------   59 (122)
Q Consensus        24 ~LTeeEreiIl~VL~Rdk~le~~E~eRirrL------------------C~~C~--------------------------   59 (122)
                      -||++|+++|++||+||+++++.|.+|++++                  |.+|.                          
T Consensus         2 ~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~   81 (124)
T d1zbdb_           2 ELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV   81 (124)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcCcccCCcccCCCCCCCcCccCCcccccCCCC
Confidence            5899999999999999999999999998776                  44443                          


Q ss_pred             -------ccccccchhhhhhhHhhhcccccccCCCCCC
Q psy6193          60 -------MVIWVCILCRKKQELLSKTGQWINKGMNSTP   90 (122)
Q Consensus        60 -------k~~W~C~vC~k~~eL~~kSGeWFye~~~~~~   90 (122)
                             ++.|+|.+|.++++++++||+|||++.++.-
T Consensus        82 ~~~~~~~~~~w~C~~C~k~re~~~~sg~Wf~~~~~~~~  119 (124)
T d1zbdb_          82 ETSNNRPHPVWLCKICLEQREVWKRSGAWFFKGFPKQV  119 (124)
T ss_dssp             ECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTSCCCCC
T ss_pred             CccCCCCCCCEECccCcchHHHHHHccChhhcCCCCCC
Confidence                   3579999999999999999999999987643