Psyllid ID: psy6200


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
MTLLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSDEEHKRVDFRYLFIQNHPHRCLQCGTSWANKGPTGTFRGPGAASLPKSPKTILN
ccEEEHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEEEEEHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccHccccccccEccc
MTLLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEyekpvwsdssdgeatessdeehkrvDFRYLFiqnhphrclqcgtswankgptgtfrgpgaaslpkspktiln
mtllfifqenecfqSVLKSSQRKLLKASRDKSFLLDRLLEyekpvwsdssdgeatessdeehKRVDFRYLFIQNHPHRCLQCGTSWANKGPTGTfrgpgaaslpkspktiln
MTLLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSDEEHKRVDFRYLFIQNHPHRCLQCGTSWANKGPTGTFRGPGAASLPKSPKTILN
**LLFIFQENECFQSVLK*************SFLLDRLLEYEK*********************VDFRYLFIQNHPHRCLQCGTSWAN************************
*TLLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEY***********************************************************************
MTLLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYEKPV****************HKRVDFRYLFIQNHPHRCLQCGTSWANKGPTGTFRGPG*************
*TLLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYEKP*****************HKRVDFRYLFIQNHPH***********************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTLLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSDEEHKRVDFRYLFIQNHPHRCLQCGTSWANKGPTGTFRGPGAASLPKSPKTILN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query112 2.2.26 [Sep-21-2011]
Q29RS4 244 INO80 complex subunit E O yes N/A 0.357 0.163 0.7 2e-09
Q6AYH2 244 INO80 complex subunit E O yes N/A 0.357 0.163 0.7 2e-09
Q8NBZ0 244 INO80 complex subunit E O yes N/A 0.357 0.163 0.7 2e-09
>sp|Q29RS4|IN80E_BOVIN INO80 complex subunit E OS=Bos taurus GN=INO80E PE=2 SV=1 Back     alignment and function desciption
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 3  LLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYE 42
          L F+  E+ECFQ  L+ +QRKLLK SRDKSFLLDRLL+YE
Sbjct: 22 LKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYE 61




Putative regulatory component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
Bos taurus (taxid: 9913)
>sp|Q6AYH2|IN80E_RAT INO80 complex subunit E OS=Rattus norvegicus GN=Ino80e PE=2 SV=1 Back     alignment and function description
>sp|Q8NBZ0|IN80E_HUMAN INO80 complex subunit E OS=Homo sapiens GN=INO80E PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query112
340729587 237 PREDICTED: hypothetical protein LOC10064 0.758 0.358 0.521 3e-13
383853932 236 PREDICTED: uncharacterized protein LOC10 0.660 0.313 0.567 4e-13
48139894 236 PREDICTED: hypothetical protein LOC40999 0.660 0.313 0.567 5e-13
380020604 236 PREDICTED: uncharacterized protein LOC10 0.660 0.313 0.567 5e-13
322803076 237 hypothetical protein SINV_04933 [Solenop 0.562 0.265 0.640 6e-13
307199115 260 Coiled-coil domain-containing protein 95 0.562 0.242 0.640 7e-13
332025828 258 INO80 complex subunit E [Acromyrmex echi 0.562 0.244 0.625 2e-12
345483966182 PREDICTED: hypothetical protein LOC10067 0.580 0.357 0.6 2e-12
327287106 245 PREDICTED: INO80 complex subunit E-like 0.553 0.253 0.619 1e-11
195172734 295 GL20093 [Drosophila persimilis] gi|19411 0.517 0.196 0.627 2e-11
>gi|340729587|ref|XP_003403081.1| PREDICTED: hypothetical protein LOC100648540 [Bombus terrestris] gi|350402244|ref|XP_003486418.1| PREDICTED: hypothetical protein LOC100742620 [Bombus impatiens] Back     alignment and taxonomy information
 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 58/92 (63%), Gaps = 7/92 (7%)

Query: 3   LLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSDEEH 62
           L F+  ENECFQ  L+S+QRKLLK +RDKSFLLDRLL+YEK V +  S+ + TESSDEE 
Sbjct: 43  LKFLIYENECFQEALRSTQRKLLKVNRDKSFLLDRLLQYEK-VDASFSESDETESSDEEV 101

Query: 63  KRVDFR-----YLFIQNH-PHRCLQCGTSWAN 88
            R+D        + I NH PH       S  N
Sbjct: 102 TRLDTSKRKKIEMGISNHTPHHMPTVTKSQLN 133




Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853932|ref|XP_003702476.1| PREDICTED: uncharacterized protein LOC100883693 [Megachile rotundata] Back     alignment and taxonomy information
>gi|48139894|ref|XP_393482.1| PREDICTED: hypothetical protein LOC409994 [Apis mellifera] Back     alignment and taxonomy information
>gi|380020604|ref|XP_003694172.1| PREDICTED: uncharacterized protein LOC100863177 [Apis florea] Back     alignment and taxonomy information
>gi|322803076|gb|EFZ23164.1| hypothetical protein SINV_04933 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307199115|gb|EFN79825.1| Coiled-coil domain-containing protein 95 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332025828|gb|EGI65985.1| INO80 complex subunit E [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345483966|ref|XP_003424917.1| PREDICTED: hypothetical protein LOC100679824 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|327287106|ref|XP_003228270.1| PREDICTED: INO80 complex subunit E-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|195172734|ref|XP_002027151.1| GL20093 [Drosophila persimilis] gi|194112964|gb|EDW35007.1| GL20093 [Drosophila persimilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query112
FB|FBgn0033566 297 CG18004 [Drosophila melanogast 0.517 0.195 0.627 7.5e-14
UNIPROTKB|F1MIJ3200 INO80E "INO80 complex subunit 0.5 0.28 0.666 7.9e-14
UNIPROTKB|F1MQE7 239 INO80E "INO80 complex subunit 0.5 0.234 0.666 7.9e-14
UNIPROTKB|Q29RS4 244 INO80E "INO80 complex subunit 0.5 0.229 0.666 7.9e-14
UNIPROTKB|E2QRR3 244 INO80E "Uncharacterized protei 0.5 0.229 0.666 7.9e-14
UNIPROTKB|H3BNM4227 INO80E "INO80 complex subunit 0.5 0.246 0.666 7.9e-14
UNIPROTKB|I3L270188 INO80E "Putative uncharacteriz 0.5 0.297 0.666 7.9e-14
UNIPROTKB|I3NI13173 INO80E "INO80 complex subunit 0.5 0.323 0.666 7.9e-14
UNIPROTKB|J3KNE2205 INO80E "INO80 complex subunit 0.5 0.273 0.666 7.9e-14
UNIPROTKB|Q6Y2K3137 INO80E "Putative uncharacteriz 0.5 0.408 0.666 7.9e-14
FB|FBgn0033566 CG18004 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 181 (68.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query:     3 LLFIFQENECFQSVLKSSQRKLLKASRDKSFLLDRLLEYEKPVWSDSSDGEATESSDEE 61
             L F+  ENE FQ +L ++QR+LLK SRD++FLLDRLL YEKP   DSSD +AT+SSD E
Sbjct:    73 LKFLIYENEYFQDLLHTNQRRLLKVSRDRTFLLDRLLVYEKPA-KDSSDSDATDSSDSE 130




GO:0006281 "DNA repair" evidence=IEA
GO:0031011 "Ino80 complex" evidence=IEA
GO:0006260 "DNA replication" evidence=IEA
UNIPROTKB|F1MIJ3 INO80E "INO80 complex subunit E" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQE7 INO80E "INO80 complex subunit E" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RS4 INO80E "INO80 complex subunit E" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRR3 INO80E "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|H3BNM4 INO80E "INO80 complex subunit E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L270 INO80E "Putative uncharacterized protein FLJ90652" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3NI13 INO80E "INO80 complex subunit E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNE2 INO80E "INO80 complex subunit E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Y2K3 INO80E "Putative uncharacterized protein FLJ90652" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00