Psyllid ID: psy6223


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
ASSSNEAVHLQQRLRSLSTELVTLRNKLHVQAPPTAPPIKPSLPPVAPGNTGPAPLLYKPIPQHQKAANIVVADVLSEKCPPVPAVGGGGSTPHSPGDAGSKPVTPV
ccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEHHEHHccccccccccccccccccccccccccccccc
ASSSNEAVHLQQRLRSLSTELVTLRNKlhvqapptappikpslppvapgntgpapllykpipqhqkAANIVVADVlsekcppvpavggggstphspgdagskpvtpv
ASSSNEAVHLQQRLRSLSTELVTLRNKLHVqapptappikpslppvAPGNTGPAPLLYKPIPQHQKAANIVVADVLSEKCPPVPAVGgggstphspgdagskpvtpv
ASSSNEAVHLQQRLRSLSTELVTLRNKLHVQAPPTAPPIKPSLPPVAPGNTGPAPLLYKPIPQHQKAANIVVADVLSEKCPPVPAVGGGGSTPHSPGDAGSKPVTPV
********************************************************LYK*I**HQKAANIVVADVLS******************************
***********QRLRSLSTELVTLRN*******************************YKPIPQHQKAANIVVADVLSEKCPPVPAV*********************
************RLRSLSTELVTLRNKLHVQAPPTAPPIKPSLPPVAPGNTGPAPLLYKPIPQHQKAANIVVADVLSEKCPPVPA**********************
***********Q*LRSLSTELVTLRNKLHV**********************PAPLLYKPIPQHQKAANIVVADVLSEKCPPVPAV*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ASSSNExxxxxxxxxxxxxxxxxxxxxLHVQAPPTAPPIKPSLPPVAPGNTGPAPLLYKPIPQHQKAANIVVADVLSEKCPPVPAVGGGGSTPHSPGDAGSKPVTPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
91092448 1026 PREDICTED: similar to myosin x [Triboliu 0.448 0.046 0.755 3e-10
383847080 1142 PREDICTED: unconventional myosin-IXb-lik 0.317 0.029 0.911 5e-09
380029710 1146 PREDICTED: unconventional myosin-IXb-lik 0.317 0.029 0.911 5e-09
340719459 1142 PREDICTED: myosin-I heavy chain-like [Bo 0.317 0.029 0.911 5e-09
328784613 1144 PREDICTED: myosin-IXb isoform 1 [Apis me 0.317 0.029 0.911 5e-09
332017658 1211 Myosin-VIIa [Acromyrmex echinatior] 0.336 0.029 0.861 9e-09
322789391 943 hypothetical protein SINV_02418 [Solenop 0.336 0.038 0.861 1e-08
307206220 1142 Myosin-Va [Harpegnathos saltator] 0.336 0.031 0.861 1e-08
307171387 1146 Myosin-I heavy chain [Camponotus florida 0.336 0.031 0.861 1e-08
195339261 1234 GM16990 [Drosophila sechellia] gi|194130 0.495 0.042 0.672 1e-08
>gi|91092448|ref|XP_969433.1| PREDICTED: similar to myosin x [Tribolium castaneum] Back     alignment and taxonomy information
 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 1  ASSSNEAVHLQQRLRSLSTELVTLRNKLHVQAPPTAPPIKPSLPPVAPG 49
          ASSSNEAVHLQQRLRSLSTELVTLRN+LHVQ  P A P+K +  PV  G
Sbjct: 32 ASSSNEAVHLQQRLRSLSTELVTLRNRLHVQGAP-AAPLKGAPVPVVAG 79




Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847080|ref|XP_003699183.1| PREDICTED: unconventional myosin-IXb-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380029710|ref|XP_003698510.1| PREDICTED: unconventional myosin-IXb-like [Apis florea] Back     alignment and taxonomy information
>gi|340719459|ref|XP_003398171.1| PREDICTED: myosin-I heavy chain-like [Bombus terrestris] gi|350410455|ref|XP_003489045.1| PREDICTED: myosin-I heavy chain-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328784613|ref|XP_624098.2| PREDICTED: myosin-IXb isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|332017658|gb|EGI58350.1| Myosin-VIIa [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322789391|gb|EFZ14696.1| hypothetical protein SINV_02418 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307206220|gb|EFN84300.1| Myosin-Va [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307171387|gb|EFN63268.1| Myosin-I heavy chain [Camponotus floridanus] Back     alignment and taxonomy information
>gi|195339261|ref|XP_002036238.1| GM16990 [Drosophila sechellia] gi|194130118|gb|EDW52161.1| GM16990 [Drosophila sechellia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query107
FB|FBgn0262029 1317 d "dachs" [Drosophila melanoga 0.495 0.040 0.654 1.9e-09
UNIPROTKB|G3MW14411 SF3A2 "Splicing factor 3A subu 0.654 0.170 0.364 1.3e-05
UNIPROTKB|A5PJN8 477 SF3A2 "Splicing factor 3A subu 0.654 0.146 0.364 1.9e-05
UNIPROTKB|J9P6E2 478 SF3A2 "Uncharacterized protein 0.691 0.154 0.367 1.9e-05
RGD|1308627 471 Sf3a2 "splicing factor 3a, sub 0.672 0.152 0.341 2.4e-05
UNIPROTKB|E2QXZ1 463 SF3A2 "Uncharacterized protein 0.607 0.140 0.383 2.9e-05
UNIPROTKB|Q15428 464 SF3A2 "Splicing factor 3A subu 0.654 0.150 0.364 2.9e-05
UNIPROTKB|P19835753 CEL "Bile salt-activated lipas 0.644 0.091 0.392 6.2e-05
DICTYBASE|DDB_G0270430197 wipA "WH2 domain-containing pr 0.700 0.380 0.354 0.00017
UNIPROTKB|F6QPK8 503 WIPF1 "Uncharacterized protein 0.607 0.129 0.337 0.00026
FB|FBgn0262029 d "dachs" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 36/55 (65%), Positives = 38/55 (69%)

Query:     1 ASSSNEAVHLQQRLRSLSTELVTLRNKLHV-QAPPTAPPIKPSLPPVAPG-NTGP 53
             ASSSNEAVHLQQRL+SLSTELVTLRN+LHV   P           PVAP  N GP
Sbjct:    84 ASSSNEAVHLQQRLKSLSTELVTLRNRLHVGHGPGQGQSQGNGAQPVAPAPNAGP 138




GO:0016459 "myosin complex" evidence=IEA;ISS;NAS
GO:0042623 "ATPase activity, coupled" evidence=ISS;NAS
GO:0003774 "motor activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0035220 "wing disc development" evidence=IMP
GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP
GO:0035218 "leg disc development" evidence=IMP
GO:0045927 "positive regulation of growth" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP
GO:0045572 "positive regulation of imaginal disc growth" evidence=IMP
GO:0001736 "establishment of planar polarity" evidence=IMP
UNIPROTKB|G3MW14 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A5PJN8 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6E2 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1308627 Sf3a2 "splicing factor 3a, subunit 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXZ1 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15428 SF3A2 "Splicing factor 3A subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P19835 CEL "Bile salt-activated lipase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270430 wipA "WH2 domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F6QPK8 WIPF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 107
KOG1924|consensus 1102 86.9
>KOG1924|consensus Back     alignment and domain information
Probab=86.90  E-value=2.1  Score=40.37  Aligned_cols=20  Identities=15%  Similarity=0.262  Sum_probs=10.7

Q ss_pred             HhHHHHHHHhhhhhhhhhhh
Q psy6223           7 AVHLQQRLRSLSTELVTLRN   26 (107)
Q Consensus         7 avhlqqrl~slstelvtlrn   26 (107)
                      +-|..+.++.|..|.+.|+.
T Consensus       497 l~k~e~Ki~~l~ae~~al~s  516 (1102)
T KOG1924|consen  497 LQKHEEKIKLLEAEKQALSS  516 (1102)
T ss_pred             HHHhhhhcccCchhhhhccC
Confidence            33444555556666666554




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00