Psyllid ID: psy6234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIWKRQQH
ccccccccccccEEEEEccccccccccccccccEEEEEEEEEEEccEEEEEEccccccccccEEEEccccccccccHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccEEEEEEEEEcccEEEEEEEcccccEEEEccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHccccc
ccccccccEEcEEEEEEccccccccccccccccEEEEEEEEEHcccEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHcccccccccccEccEEEEEEccccccEEEEEEEEEEcccEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHcccccccccccccccccEEEEEccccccHHHHHccc
MSDCWENISVGMKVEventdtdtpsgnhdnypdsfWVASVTQIAGYKALLRyegfgedsskDFWVNLCSsmvhpvgwcatrgkplipprtietkysDWKDFLVKRLtgartlpsnfyHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLqvhyyddddgfcchqdsplihpvgwarrtghlisapplytdrcakgirdrddatedlfplsvgtagtklspgtgqtggfVVGMklesvdplnlsdIWKRQQH
MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPvgwcatrgkplipprtietkysdWKDFLVKRLTgartlpsnfyhkvqesvksrfrvdmnlevvdkkrisqvkvatiekivgkrLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHlisapplytdRCAKGIRDRDDATEDLFPLsvgtagtklspgtgqTGGFVVGMKlesvdplnlsdiwkrqqh
MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIWKRQQH
******************************YPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGT******GQTGGFVVGMKLESVDPLNLSDI******
***CWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQE***SRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKL*PGTGQTGGFVVGMKLESVDPLNLSDIWKR***
MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIWKRQQH
*SDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIWKRQ**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFVVGMKLESVDPLNLSDIWKRQQH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q29L50 1274 Polycomb protein Sfmbt OS yes N/A 0.953 0.194 0.600 6e-84
Q9VK33 1220 Polycomb protein Sfmbt OS yes N/A 0.953 0.203 0.604 5e-83
Q6DIN3 651 MBT domain-containing pro yes N/A 0.9 0.359 0.470 2e-60
Q32N90 621 MBT domain-containing pro N/A N/A 0.9 0.376 0.459 7e-60
Q6P5G3 631 MBT domain-containing pro yes N/A 0.9 0.370 0.459 1e-58
Q05BQ5 628 MBT domain-containing pro yes N/A 0.9 0.372 0.463 1e-58
Q1JQD9 706 Lethal(3)malignant brain yes N/A 0.919 0.338 0.468 2e-58
Q3MIF2 703 Lethal(3)malignant brain no N/A 0.926 0.342 0.460 2e-58
Q969R5 705 Lethal(3)malignant brain no N/A 0.919 0.339 0.468 3e-58
Q5R737 705 Lethal(3)malignant brain yes N/A 0.919 0.339 0.468 3e-58
>sp|Q29L50|SMBT_DROPS Polycomb protein Sfmbt OS=Drosophila pseudoobscura pseudoobscura GN=Sfmbt PE=3 SV=2 Back     alignment and function desciption
 Score =  310 bits (795), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 188/258 (72%), Gaps = 10/258 (3%)

Query: 3   DCWENISVGMKVEVENTDTDTPSG-NHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSK 61
           + W+N+ VGMKVEVENTD D          P SFWVA++ +I GYKAL+ YEGF  DS  
Sbjct: 590 EVWDNLGVGMKVEVENTDCDNIEIIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDS-H 648

Query: 62  DFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ 121
           DFWVNLC++ VH VGWCATRGKPLIPPRTIE KY DWKDFLV RL+GARTLPSNFY+K+ 
Sbjct: 649 DFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNKIN 708

Query: 122 ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPV 181
           +S++SRFR+ +NLE VDK RISQV++AT+ KIVGKRL + Y+D DDGF CH+DSP+IHPV
Sbjct: 709 DSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGKRLFLRYFDTDDGFWCHEDSPIIHPV 768

Query: 182 GWARRTGHLISAPPLYTDRCAKGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGG 236
           GWA   GH ++AP  Y +R   G         DDAT +LF ++       L    G+T G
Sbjct: 769 GWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYFLD---GKTNG 825

Query: 237 FVVGMKLESVDPLNLSDI 254
           F+ GMKLE+VDPLNLS I
Sbjct: 826 FIEGMKLEAVDPLNLSSI 843
Polycomb group (PcG) protein that binds to the Polycomb response elements (PREs) found in the regulatory regions of many genes. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Necessary but not sufficient to recruit a functional PcG repressive complex that represses target genes, suggesting that the recruitment of the distinct PRC1 complex is also required to allow a subsequent repression.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)
>sp|Q9VK33|SMBT_DROME Polycomb protein Sfmbt OS=Drosophila melanogaster GN=Sfmbt PE=1 SV=2 Back     alignment and function description
>sp|Q6DIN3|MBTD1_XENTR MBT domain-containing protein 1 OS=Xenopus tropicalis GN=mbtd1 PE=2 SV=1 Back     alignment and function description
>sp|Q32N90|MBTD1_XENLA MBT domain-containing protein 1 OS=Xenopus laevis GN=mbtd1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P5G3|MBTD1_MOUSE MBT domain-containing protein 1 OS=Mus musculus GN=Mbtd1 PE=2 SV=1 Back     alignment and function description
>sp|Q05BQ5|MBTD1_HUMAN MBT domain-containing protein 1 OS=Homo sapiens GN=MBTD1 PE=1 SV=2 Back     alignment and function description
>sp|Q1JQD9|LMBL2_BOVIN Lethal(3)malignant brain tumor-like protein 2 OS=Bos taurus GN=L3MBTL2 PE=2 SV=1 Back     alignment and function description
>sp|Q3MIF2|LMBL2_RAT Lethal(3)malignant brain tumor-like protein 2 OS=Rattus norvegicus GN=L3mbtl2 PE=2 SV=1 Back     alignment and function description
>sp|Q969R5|LMBL2_HUMAN Lethal(3)malignant brain tumor-like protein 2 OS=Homo sapiens GN=L3MBTL2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R737|LMBL2_PONAB Lethal(3)malignant brain tumor-like protein 2 OS=Pongo abelii GN=L3MBTL2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
242024870 968 conserved hypothetical protein [Pediculu 0.946 0.254 0.655 1e-92
91080415 886 PREDICTED: similar to Scm-related gene c 0.942 0.276 0.662 3e-91
328706730 851 PREDICTED: polycomb protein Sfmbt-like i 0.923 0.282 0.619 6e-89
328706728 861 PREDICTED: polycomb protein Sfmbt-like i 0.923 0.278 0.619 7e-89
307187577 1434 Polycomb protein Sfmbt [Camponotus flori 0.934 0.169 0.630 3e-86
157109988 732 hypothetical protein AaeL_AAEL005453 [Ae 0.953 0.338 0.632 3e-85
383855458 952 PREDICTED: polycomb protein Sfmbt-like [ 0.938 0.256 0.626 4e-85
332026061 952 Polycomb protein Sfmbt [Acromyrmex echin 0.926 0.253 0.617 4e-85
380013488 952 PREDICTED: polycomb protein Sfmbt-like [ 0.938 0.256 0.626 6e-85
340721132 952 PREDICTED: polycomb protein Sfmbt-like i 0.938 0.256 0.630 9e-85
>gi|242024870|ref|XP_002432849.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518358|gb|EEB20111.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 171/261 (65%), Positives = 206/261 (78%), Gaps = 15/261 (5%)

Query: 1   MSDCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSS 60
           MSD W+NI++GMKVEVEN D +      + +PDSFWVA+V +IAGYKALLRYEGF +++ 
Sbjct: 321 MSDSWDNITIGMKVEVENKDCE---DYCEAFPDSFWVATVLKIAGYKALLRYEGFEQNND 377

Query: 61  KDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKV 120
           KDFWVNLCS+ VHPVGWCATRGKPLIPP+TIE KY DWK+FLV++LTGARTLPSNFY KV
Sbjct: 378 KDFWVNLCSNNVHPVGWCATRGKPLIPPKTIEHKYKDWKEFLVEKLTGARTLPSNFYTKV 437

Query: 121 QESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYD---DDDGFCCHQDSPL 177
           Q+S+KSRFRV +N+EVVDK +ISQV VA++++IVGKRL V YY+   DD+GF CH+DSPL
Sbjct: 438 QDSLKSRFRVGLNMEVVDKNKISQVCVASVKRIVGKRLHVEYYNAEPDDNGFWCHEDSPL 497

Query: 178 IHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLF--PL--SVGTAGTKLSPGTGQ 233
           IHPVGWA R GHLI AP  Y +RC  G+ ++DDATE+LF  P   SV T    LS     
Sbjct: 498 IHPVGWASRVGHLIEAPEDYIERCESGVIEKDDATEELFTAPFQTSVSTPRDALS----- 552

Query: 234 TGGFVVGMKLESVDPLNLSDI 254
           +G F  GMKLE+VDPLNL  I
Sbjct: 553 SGKFEEGMKLEAVDPLNLGSI 573

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91080415|ref|XP_967817.1| PREDICTED: similar to Scm-related gene containing four mbt domains CG16975-PB [Tribolium castaneum] gi|270005578|gb|EFA02026.1| hypothetical protein TcasGA2_TC007651 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328706730|ref|XP_003243184.1| PREDICTED: polycomb protein Sfmbt-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328706728|ref|XP_001946049.2| PREDICTED: polycomb protein Sfmbt-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307187577|gb|EFN72589.1| Polycomb protein Sfmbt [Camponotus floridanus] Back     alignment and taxonomy information
>gi|157109988|ref|XP_001650907.1| hypothetical protein AaeL_AAEL005453 [Aedes aegypti] gi|108878844|gb|EAT43069.1| AAEL005453-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|383855458|ref|XP_003703228.1| PREDICTED: polycomb protein Sfmbt-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|332026061|gb|EGI66212.1| Polycomb protein Sfmbt [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380013488|ref|XP_003690787.1| PREDICTED: polycomb protein Sfmbt-like [Apis florea] Back     alignment and taxonomy information
>gi|340721132|ref|XP_003398979.1| PREDICTED: polycomb protein Sfmbt-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
FB|FBgn0032475 1220 Sfmbt "Scm-related gene contai 0.953 0.203 0.604 3e-78
UNIPROTKB|Q29L50 1274 Sfmbt "Polycomb protein Sfmbt" 0.953 0.194 0.600 5.2e-78
UNIPROTKB|F1RSH5 646 MBTD1 "Uncharacterized protein 0.9 0.362 0.466 3.3e-56
MGI|MGI:2143977 631 Mbtd1 "mbt domain containing 1 0.9 0.370 0.459 6.8e-56
UNIPROTKB|Q05BQ5 628 MBTD1 "MBT domain-containing p 0.9 0.372 0.463 8.6e-56
RGD|1308569 703 L3mbtl2 "l(3)mbt-like 2 (Droso 0.919 0.339 0.464 2.3e-55
UNIPROTKB|Q3MIF2 703 L3mbtl2 "Lethal(3)malignant br 0.919 0.339 0.464 2.3e-55
UNIPROTKB|F1MGV0 651 MBTD1 "Uncharacterized protein 0.9 0.359 0.459 2.9e-55
MGI|MGI:2443584 703 L3mbtl2 "l(3)mbt-like 2 (Droso 0.919 0.339 0.464 2.9e-55
UNIPROTKB|E2RBZ1 650 MBTD1 "Uncharacterized protein 0.9 0.36 0.459 3.7e-55
FB|FBgn0032475 Sfmbt "Scm-related gene containing four mbt domains" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 793 (284.2 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 156/258 (60%), Positives = 189/258 (73%)

Query:     3 DCWENISVGMKVEVENTDTDTPSGNHDNY-PDSFWVASVTQIAGYKALLRYEGFGEDSSK 61
             + W+N+ VGMKVEVENTD D+         P SFWVA++ +I GYKAL+ YEGF  DS  
Sbjct:   562 EVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDSH- 620

Query:    62 DFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ 121
             DFWVNLC++ VH VGWCATRGKPLIPPRTIE KY DWKDFLV RL+GARTLPSNFY+K+ 
Sbjct:   621 DFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNKIN 680

Query:   122 ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPV 181
             +S++SRFR+ +NLE VDK RISQV++AT+ KIVGKRL + Y+D DDGF CH+DSP+IHPV
Sbjct:   681 DSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGKRLFLRYFDSDDGFWCHEDSPIIHPV 740

Query:   182 GWARRTGHLISAPPLYTDRCAKGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGG 236
             GWA   GH ++AP  Y +R   G         DDAT +LF ++  T     S G  +T  
Sbjct:   741 GWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNF-TFDEYYSDG--KTNS 797

Query:   237 FVVGMKLESVDPLNLSDI 254
             FV GMKLE+VDPLNLS I
Sbjct:   798 FVEGMKLEAVDPLNLSSI 815
GO:0008270 "zinc ion binding" evidence=IEA
GO:0035064 "methylated histone residue binding" evidence=IDA
GO:0006342 "chromatin silencing" evidence=IGI;IDA
GO:0048477 "oogenesis" evidence=IMP
GO:0005634 "nucleus" evidence=IDA
GO:0007446 "imaginal disc growth" evidence=IMP
GO:0010629 "negative regulation of gene expression" evidence=IMP
GO:0003682 "chromatin binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|Q29L50 Sfmbt "Polycomb protein Sfmbt" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSH5 MBTD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2143977 Mbtd1 "mbt domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q05BQ5 MBTD1 "MBT domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308569 L3mbtl2 "l(3)mbt-like 2 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MIF2 L3mbtl2 "Lethal(3)malignant brain tumor-like protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MGV0 MBTD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2443584 L3mbtl2 "l(3)mbt-like 2 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBZ1 MBTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VK33SMBT_DROMENo assigned EC number0.60460.95380.2032yesN/A
Q29L50SMBT_DROPSNo assigned EC number0.60070.95380.1946yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
smart0056196 smart00561, MBT, Present in Drosophila Scm, l(3)mb 1e-32
pfam0282073 pfam02820, MBT, mbt repeat 4e-24
smart0056196 smart00561, MBT, Present in Drosophila Scm, l(3)mb 5e-21
pfam0282073 pfam02820, MBT, mbt repeat 3e-12
smart0056196 smart00561, MBT, Present in Drosophila Scm, l(3)mb 0.002
>gnl|CDD|214723 smart00561, MBT, Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2 Back     alignment and domain information 
 Score =  114 bits (288), Expect = 1e-32
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 4/98 (4%)

Query: 99  KDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRL 158
           +D+L    TGAR  P   + +  +S  + F+V M LE VD +  S + VAT+ ++ G RL
Sbjct: 1   EDYL--EETGARAAPVELFKQPVDSPPNGFKVGMKLEAVDPRNPSLICVATVVEVKGYRL 58

Query: 159 QVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAP 194
            +H+  +DD   F CH DSP I PVGW  + GH +  P
Sbjct: 59  LLHFDGWDDKYDFWCHADSPDIFPVGWCEKNGHPLQPP 96

Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation. Length = 96
>gnl|CDD|202414 pfam02820, MBT, mbt repeat Back     alignment and domain information
>gnl|CDD|214723 smart00561, MBT, Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2 Back     alignment and domain information
>gnl|CDD|202414 pfam02820, MBT, mbt repeat Back     alignment and domain information
>gnl|CDD|214723 smart00561, MBT, Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
KOG3766|consensus 478 100.0
KOG3766|consensus 478 100.0
smart0056196 MBT Present in Drosophila Scm, l(3)mbt, and verteb 100.0
smart0056196 MBT Present in Drosophila Scm, l(3)mbt, and verteb 99.96
PF0282073 MBT: mbt repeat; InterPro: IPR004092 The function 99.95
PF0282073 MBT: mbt repeat; InterPro: IPR004092 The function 99.95
smart0074361 Agenet Tudor-like domain present in plant sequence 96.08
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 96.05
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 95.21
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 95.08
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 94.77
smart0074361 Agenet Tudor-like domain present in plant sequence 94.11
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 90.03
PF15057124 DUF4537: Domain of unknown function (DUF4537) 82.8
>KOG3766|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.4e-56  Score=420.29  Aligned_cols=236  Identities=31%  Similarity=0.560  Sum_probs=200.3

Q ss_pred             cCcccccEEEEEeCCCCCCCCCCCCCCCcEEEEEEEEEeCCEEEEEEcccCCCCCCCeeeeCCCCCeecccchhccCCCC
Q psy6234           6 ENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRGKPL   85 (260)
Q Consensus         6 ~~~~~GmklEv~~~~~~~~~~~~~~~p~~~wvA~V~~~~G~rl~lr~~G~~~d~~~dfW~~~~s~~ihPvGw~~~~g~~L   85 (260)
                      +.|++|||||++|+          ++|+.+|+|+|++++|+|++|+|+|++  ..+|||++++||+|||+|||+++|+.|
T Consensus        88 ~~~k~GmklE~vd~----------~~~s~~~~asV~~v~g~Rl~l~~~g~~--~~~dfW~~~~sp~i~pvGw~~~~g~~l  155 (478)
T KOG3766|consen   88 NCFKPGMKLEAVDP----------DNPSSTWIATVEEVCGGRLRLRFDGLD--ENYDFWLHALSPDIHPVGWCEKSGHKL  155 (478)
T ss_pred             cccCCCceEEEEec----------CCCceEEEEEEEeecccEEEEEecCcc--cCCccceecCCccccccccccccCccc
Confidence            57999999999986          378999999999999999999999986  579999999999999999999999999


Q ss_pred             CCCCCCC-CCcCcHHHHHHHHhcCCCCCCccccccc--cccccCCCCCCcEEEEecCCCCCceEEEEEEeEeCCe-EEEE
Q psy6234          86 IPPRTIE-TKYSDWKDFLVKRLTGARTLPSNFYHKV--QESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKR-LQVH  161 (260)
Q Consensus        86 ~pP~~~~-~~~~~W~~~L~~~~~~~~~~P~~~f~~~--~~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~r-l~v~  161 (260)
                      +||.+|. .+.++|..||.+.+.++..+|...|...  +.+..+.|++|||||+||+.||+.||||||++|+++| ++|+
T Consensus       156 ~pP~~~~~~~~~s~~~~~~k~~~~~~~~p~~~~~~~~~~~~~~~~F~vgmkLEavd~~np~~IcvATV~~V~~~~~i~v~  235 (478)
T KOG3766|consen  156 QPPLGYRIRNEYSWEQYLEKTLGQAELAPKRLFVREPSRDPPPSRFQVGMKLEAVDDLNPSAICVATVVEVFDSREILVH  235 (478)
T ss_pred             CCCccccccccccccchhhhcccccccCcccccccccccCCCCCcceeccEEEEeccCCCcceeeeehheecccceEEEE
Confidence            9999998 6778999999987656778888777543  4566799999999999999999999999999999999 9999


Q ss_pred             Eec--CC-CCEEEEcCCCCceechhhhhcCCcccCCCCCccccccccCCCCCCccccCCCCCCCcCCCCCCCCCCCCCCC
Q psy6234         162 YYD--DD-DGFCCHQDSPLIHPVGWARRTGHLISAPPLYTDRCAKGIRDRDDATEDLFPLSVGTAGTKLSPGTGQTGGFV  238 (260)
Q Consensus       162 ~~~--~~-~~~w~~~~S~~I~PvGw~~~~g~~L~pP~~y~~~~~~~~~~~~~a~~~~f~~~~~~~~~~~~~~~~~~~~F~  238 (260)
                      +|+  .. +||||+.+|+.|||||||.+||+.|+||++|.......+   ....++   .....+++.++++..+.|.|+
T Consensus       236 ~d~~~~~~~d~~~~~~s~~I~Pv~~~~~~~~~L~ppk~~~~~~~~~~---~~~~e~---~~~~~~~~~~~~p~~p~~~~k  309 (478)
T KOG3766|consen  236 FDGWDKSELDYWCDHDSPKIFPVGWCCKNGDKLTPPKDYYEADNFKW---EKYLEE---TGASAAPSRAFNPRCPNHLFK  309 (478)
T ss_pred             eccCCCcccceeEecCCCceeeeeEhhhcCcccCCCccccccccccc---cccccc---ccccccchhccCCCCCCcccc
Confidence            998  33 799999999999999999999999999995544332111   111111   112223334555677889999


Q ss_pred             CCCEEEEecCCCCCCceeeee
Q psy6234         239 VGMKLESVDPLNLSDIWKRQQ  259 (260)
Q Consensus       239 ~GMKLEaVDp~~p~~IcvATv  259 (260)
                      +|||||+||+++|.+||||||
T Consensus       310 ~~~k~e~~d~~~p~~~~vatv  330 (478)
T KOG3766|consen  310 VGMKLEAVDLRNPRLICVATV  330 (478)
T ss_pred             ccceeeeccccCCcccccccc
Confidence            999999999999999999998

>KOG3766|consensus Back     alignment and domain information
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2 Back     alignment and domain information
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2 Back     alignment and domain information
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression Back     alignment and domain information
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
3h6z_A 447 Crystal Structure Of The Four Mbt Repeats Of Drosop 5e-82
3cey_A 474 Crystal Structure Of L3mbtl2 Length = 474 1e-59
3f70_A 456 Crystal Structure Of L3mbtl2-H4k20me1 Complex Lengt 2e-59
3feo_A 437 The Crystal Structure Of Mbtd1 Length = 437 3e-59
1oz2_A331 Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Ma 6e-26
1oz2_A 331 Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Ma 4e-12
3oq5_A345 Crystal Structure Of The 3-Mbt Domain From Human L3 6e-26
3oq5_A 345 Crystal Structure Of The 3-Mbt Domain From Human L3 3e-12
2pqw_A323 Crystal Structure Of L3mbtl1 In Complex With H4k20m 6e-26
2pqw_A 323 Crystal Structure Of L3mbtl1 In Complex With H4k20m 4e-12
2rhi_A345 Crystal Structure Of The 3-mbt Domain From Human L3 6e-26
2rhi_A 345 Crystal Structure Of The 3-mbt Domain From Human L3 2e-12
2rjc_A331 Crystal Structure Of L3mbtl1 Protein In Complex Wit 6e-26
2rjc_A 331 Crystal Structure Of L3mbtl1 Protein In Complex Wit 4e-12
2ri3_A319 Crystal Structure Of The 3-Mbt Repeats From Human L 1e-25
2ri3_A 319 Crystal Structure Of The 3-Mbt Repeats From Human L 8e-12
2rhy_A319 Crystal Structure Of The 3-Mbt Repeats From Human L 2e-25
2rhy_A 319 Crystal Structure Of The 3-Mbt Repeats From Human L 2e-12
2rhu_A329 Crystal Structure Of The 3-Mbt Repeats From Human L 2e-25
2rhu_A 329 Crystal Structure Of The 3-Mbt Repeats From Human L 2e-12
2ri5_A319 Crystal Structure Of The 3-Mbt Repeats From Human L 2e-25
4fl6_A332 Crystal Structure Of The Complex Of The 3-Mbt Repea 2e-25
4fl6_A 332 Crystal Structure Of The Complex Of The 3-Mbt Repea 3e-11
3ut1_A324 Crystal Structure Of The 3-Mbt Repeat Domain Of L3m 3e-25
3ut1_A 324 Crystal Structure Of The 3-Mbt Repeat Domain Of L3m 3e-11
2rhz_A319 Crystal Structure Of The 3-Mbt Repeats From Human L 5e-25
2rhz_A 319 Crystal Structure Of The 3-Mbt Repeats From Human L 5e-12
2ri2_A319 Crystal Structure Of The 3-Mbt Repeats From Human L 1e-24
2ri2_A 319 Crystal Structure Of The 3-Mbt Repeats From Human L 1e-11
1oyx_A331 Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Ma 3e-24
1oyx_A 331 Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Ma 3e-10
2biv_A243 Crystal Structure Of The Wild-Type Mbt Domains Of H 3e-17
2biv_A243 Crystal Structure Of The Wild-Type Mbt Domains Of H 5e-10
1oi1_A221 Crystal Structure Of The Mbt Domains Of Human Scml2 7e-17
1oi1_A221 Crystal Structure Of The Mbt Domains Of Human Scml2 2e-09
4edu_A215 The Mbt Repeats Of Human Scml2 In A Complex With Hi 7e-17
4edu_A215 The Mbt Repeats Of Human Scml2 In A Complex With Hi 2e-09
2p0k_A212 Crystal Structure Of Scmh1 Length = 212 7e-17
2p0k_A212 Crystal Structure Of Scmh1 Length = 212 5e-04
2r57_A265 Crystal Structure Of The Two Mbt Repeats From Sex-C 4e-12
2r57_A265 Crystal Structure Of The Two Mbt Repeats From Sex-C 7e-07
1wjs_A127 Solution Structure Of The First Mbt Domain From Hum 1e-08
1wjq_A107 Solution Structure Of The Third Mbt Domain From Hum 1e-07
1wjr_A127 Solution Structure Of The 2nd Mbt Domain From Human 1e-06
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr Length = 447 Back     alignment and structure 
Iteration: 1

 Score =  300 bits (768), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 188/258 (72%), Gaps = 10/258 (3%)
Query: 3   DCWENISVGMKVEVENTDTDTPSG-NHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSK 61
           + W+N+ VGMKVEVENTD D+         P SFWVA++ +I GYKAL+ YEGF  DS  
Sbjct: 32  EVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDS-H 90
Query: 62  DFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ 121
           DFWVNLC++ VH VGWCATRGKPLIPPRTIE KY DWKDFLV RL+GARTLPSNFY+K+ 
Sbjct: 91  DFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNKIN 150
Query: 122 ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIHPV 181
           +S++SRFR+ +NLE VDK RISQV++AT+ KIVG RL + Y+D DDGF CH+DSP+IHPV
Sbjct: 151 DSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIHPV 210
Query: 182 GWARRTGHLISAPPLYTDRCAKGIR-----DRDDATEDLFPLSVGTAGTKLSPGTGQTGG 236
           GWA   GH ++AP  Y +R   G         DDAT +LF ++  T     S   G+T  
Sbjct: 211 GWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNF-TFDEYYS--DGKTNS 267
Query: 237 FVVGMKLESVDPLNLSDI 254
           FV GMKLE+VDPLNLS I
Sbjct: 268 FVEGMKLEAVDPLNLSSI 285
>pdb|3CEY|A Chain A, Crystal Structure Of L3mbtl2 Length = 474 Back     alignment and structure
>pdb|3F70|A Chain A, Crystal Structure Of L3mbtl2-H4k20me1 Complex Length = 456 Back     alignment and structure
>pdb|3FEO|A Chain A, The Crystal Structure Of Mbtd1 Length = 437 Back     alignment and structure
>pdb|1OZ2|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant Brain Tumor (Native-Ii) At 1.55 Angstrom Length = 331 Back     alignment and structure
>pdb|1OZ2|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant Brain Tumor (Native-Ii) At 1.55 Angstrom Length = 331 Back     alignment and structure
>pdb|3OQ5|A Chain A, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1 In Complex With P53k382me1 Length = 345 Back     alignment and structure
>pdb|3OQ5|A Chain A, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1 In Complex With P53k382me1 Length = 345 Back     alignment and structure
>pdb|2PQW|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2 (Residues 17- 25), Trigonal Form Length = 323 Back     alignment and structure
>pdb|2PQW|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2 (Residues 17- 25), Trigonal Form Length = 323 Back     alignment and structure
>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1 In Complex With H1.5k27me2 At 1.66 Angstrom Length = 345 Back     alignment and structure
>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1 In Complex With H1.5k27me2 At 1.66 Angstrom Length = 345 Back     alignment and structure
>pdb|2RJC|A Chain A, Crystal Structure Of L3mbtl1 Protein In Complex With Mes Length = 331 Back     alignment and structure
>pdb|2RJC|A Chain A, Crystal Structure Of L3mbtl1 Protein In Complex With Mes Length = 331 Back     alignment and structure
>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 With N358q Point Mutation Length = 319 Back     alignment and structure
>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 With N358q Point Mutation Length = 319 Back     alignment and structure
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 Bound To Monomethyl-Lysine Length = 319 Back     alignment and structure
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 Bound To Monomethyl-Lysine Length = 319 Back     alignment and structure
>pdb|2RHU|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 Bound To Dimethyl-Lysine And In Chimera With Histone H3.3(28-34) Length = 329 Back     alignment and structure
>pdb|2RHU|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 Bound To Dimethyl-Lysine And In Chimera With Histone H3.3(28-34) Length = 329 Back     alignment and structure
>pdb|2RI5|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 With N358a Point Mutation Length = 319 Back     alignment and structure
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat Domain Of L3mbtl3 And Unc1215 Length = 332 Back     alignment and structure
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat Domain Of L3mbtl3 And Unc1215 Length = 332 Back     alignment and structure
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3 Length = 324 Back     alignment and structure
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3 Length = 324 Back     alignment and structure
>pdb|2RHZ|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 With D355n Point Mutation Length = 319 Back     alignment and structure
>pdb|2RHZ|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 With D355n Point Mutation Length = 319 Back     alignment and structure
>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 With D355a Point Mutation Length = 319 Back     alignment and structure
>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 With D355a Point Mutation Length = 319 Back     alignment and structure
>pdb|1OYX|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant Brain Tumor (Seleno-Met) At 1.85 Angstrom Length = 331 Back     alignment and structure
>pdb|1OYX|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant Brain Tumor (Seleno-Met) At 1.85 Angstrom Length = 331 Back     alignment and structure
>pdb|2BIV|A Chain A, Crystal Structure Of The Wild-Type Mbt Domains Of Human Scml2 Length = 243 Back     alignment and structure
>pdb|2BIV|A Chain A, Crystal Structure Of The Wild-Type Mbt Domains Of Human Scml2 Length = 243 Back     alignment and structure
>pdb|1OI1|A Chain A, Crystal Structure Of The Mbt Domains Of Human Scml2 Length = 221 Back     alignment and structure
>pdb|1OI1|A Chain A, Crystal Structure Of The Mbt Domains Of Human Scml2 Length = 221 Back     alignment and structure
>pdb|4EDU|A Chain A, The Mbt Repeats Of Human Scml2 In A Complex With Histone H2a Peptide Length = 215 Back     alignment and structure
>pdb|4EDU|A Chain A, The Mbt Repeats Of Human Scml2 In A Complex With Histone H2a Peptide Length = 215 Back     alignment and structure
>pdb|2P0K|A Chain A, Crystal Structure Of Scmh1 Length = 212 Back     alignment and structure
>pdb|2P0K|A Chain A, Crystal Structure Of Scmh1 Length = 212 Back     alignment and structure
>pdb|2R57|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On Midleg (Scm) Length = 265 Back     alignment and structure
>pdb|2R57|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On Midleg (Scm) Length = 265 Back     alignment and structure
>pdb|1WJS|A Chain A, Solution Structure Of The First Mbt Domain From Human Kiaa1798 Protein Length = 127 Back     alignment and structure
>pdb|1WJQ|A Chain A, Solution Structure Of The Third Mbt Domain From Human Kiaa1798 Protein Length = 107 Back     alignment and structure
>pdb|1WJR|A Chain A, Solution Structure Of The 2nd Mbt Domain From Human Kiaa1617 Protein Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
3h6z_A 447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 9e-87
3h6z_A447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 3e-48
3h6z_A447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 3e-44
3h6z_A 447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 4e-23
3f70_A 456 Lethal(3)malignant brain tumor-like 2 protein; MBT 1e-82
3f70_A456 Lethal(3)malignant brain tumor-like 2 protein; MBT 3e-47
3f70_A456 Lethal(3)malignant brain tumor-like 2 protein; MBT 8e-46
3f70_A 456 Lethal(3)malignant brain tumor-like 2 protein; MBT 8e-23
3feo_A 437 MBT domain-containing protein 1; MBTL1, structural 3e-82
3feo_A437 MBT domain-containing protein 1; MBTL1, structural 3e-44
3feo_A437 MBT domain-containing protein 1; MBTL1, structural 3e-40
3feo_A 437 MBT domain-containing protein 1; MBTL1, structural 6e-22
3ut1_A324 Lethal(3)malignant brain tumor-like protein 3; chr 4e-59
3ut1_A324 Lethal(3)malignant brain tumor-like protein 3; chr 1e-44
3ut1_A 324 Lethal(3)malignant brain tumor-like protein 3; chr 1e-40
2r58_A265 Polycomb protein SCM; MBT repeat, sex COMB on midl 9e-58
2r58_A265 Polycomb protein SCM; MBT repeat, sex COMB on midl 7e-35
2biv_A243 SCML2 protein, sex COMB on midleg-like protein 2; 1e-55
2biv_A243 SCML2 protein, sex COMB on midleg-like protein 2; 1e-42
2biv_A243 SCML2 protein, sex COMB on midleg-like protein 2; 8e-15
2biv_A 243 SCML2 protein, sex COMB on midleg-like protein 2; 3e-05
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 2e-55
1oz2_A 331 Lethal(3)malignant brain tumor-like protein; prope 3e-43
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 4e-42
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 1e-13
1wjr_A127 KIAA1617 protein; MBT domain, structural genomics, 5e-37
1wjr_A127 KIAA1617 protein; MBT domain, structural genomics, 1e-17
1wjq_A107 KIAA1798 protein; MBT domain, structural genomics, 1e-22
1wjq_A107 KIAA1798 protein; MBT domain, structural genomics, 2e-17
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 5e-04
3sd4_A69 PHD finger protein 20; tudor domain, transcription 7e-04
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Length = 447 Back     alignment and structure
 Score =  264 bits (675), Expect = 9e-87
 Identities = 153/261 (58%), Positives = 185/261 (70%), Gaps = 10/261 (3%)

Query: 1   MSDCWENISVGMKVEVENTDTDTPSGNHDN-YPDSFWVASVTQIAGYKALLRYEGFGEDS 59
             + W+N+ VGMKVEVENTD D+         P SFWVA++ +I GYKAL+ YEGF  DS
Sbjct: 30  GCEVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDS 89

Query: 60  SKDFWVNLCSSMVHPVGWCATRGKPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHK 119
             DFWVNLC++ VH VGWCATRGKPLIPPRTIE KY DWKDFLV RL+GARTLPSNFY+K
Sbjct: 90  -HDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNK 148

Query: 120 VQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYDDDDGFCCHQDSPLIH 179
           + +S++SRFR+ +NLE VDK RISQV++AT+ KIVG RL + Y+D DDGF CH+DSP+IH
Sbjct: 149 INDSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGDRLFLRYFDSDDGFWCHEDSPIIH 208

Query: 180 PVGWARRTGHLISAPPLYTDRCAKGIRDR-----DDATEDLFPLSVGTAGTKLSPGTGQT 234
           PVGWA   GH ++AP  Y +R   G         DDAT +LF +             G+T
Sbjct: 209 PVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKM---NFTFDEYYSDGKT 265

Query: 235 GGFVVGMKLESVDPLNLSDIW 255
             FV GMKLE+VDPLNLS I 
Sbjct: 266 NSFVEGMKLEAVDPLNLSSIC 286
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Length = 447 Back     alignment and structure
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Length = 447 Back     alignment and structure
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Length = 447 Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Length = 456 Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Length = 456 Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Length = 456 Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Length = 456 Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Length = 437 Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Length = 437 Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Length = 437 Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Length = 437 Back     alignment and structure
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A Length = 324 Back     alignment and structure
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A Length = 324 Back     alignment and structure
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A Length = 324 Back     alignment and structure
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A* Length = 265 Back     alignment and structure
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A* Length = 265 Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Length = 243 Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Length = 243 Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Length = 243 Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Length = 243 Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Length = 331 Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Length = 331 Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Length = 331 Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Length = 331 Back     alignment and structure
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Length = 127 Back     alignment and structure
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Length = 127 Back     alignment and structure
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Length = 107 Back     alignment and structure
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Length = 107 Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Length = 88 Back     alignment and structure
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A Length = 69 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
3ut1_A324 Lethal(3)malignant brain tumor-like protein 3; chr 100.0
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 100.0
3h6z_A 447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 100.0
3feo_A 437 MBT domain-containing protein 1; MBTL1, structural 100.0
3f70_A 456 Lethal(3)malignant brain tumor-like 2 protein; MBT 100.0
3feo_A437 MBT domain-containing protein 1; MBTL1, structural 100.0
3f70_A456 Lethal(3)malignant brain tumor-like 2 protein; MBT 100.0
3h6z_A447 Polycomb protein SFMBT; MBT, MBR repeat, aromatic 100.0
2biv_A243 SCML2 protein, sex COMB on midleg-like protein 2; 100.0
2r58_A265 Polycomb protein SCM; MBT repeat, sex COMB on midl 100.0
3ut1_A324 Lethal(3)malignant brain tumor-like protein 3; chr 100.0
1oz2_A331 Lethal(3)malignant brain tumor-like protein; prope 100.0
2biv_A243 SCML2 protein, sex COMB on midleg-like protein 2; 100.0
2r58_A265 Polycomb protein SCM; MBT repeat, sex COMB on midl 100.0
1wjr_A127 KIAA1617 protein; MBT domain, structural genomics, 100.0
1wjq_A107 KIAA1798 protein; MBT domain, structural genomics, 99.97
1wjr_A127 KIAA1617 protein; MBT domain, structural genomics, 99.97
1wjq_A107 KIAA1798 protein; MBT domain, structural genomics, 99.96
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 99.86
2eqm_A88 PHD finger protein 20-like 1; structural genomics, 99.81
3sd4_A69 PHD finger protein 20; tudor domain, transcription 99.8
3sd4_A69 PHD finger protein 20; tudor domain, transcription 99.73
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 97.6
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 97.04
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 96.14
2eko_A87 Histone acetyltransferase htatip; chromo domain, h 95.25
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 94.28
2lcc_A76 AT-rich interactive domain-containing protein 4A; 94.07
2eko_A87 Histone acetyltransferase htatip; chromo domain, h 92.85
1wgs_A133 MYST histone acetyltransferase 1; tudor domain, MY 91.69
2ro0_A92 Histone acetyltransferase ESA1; HAT, chromodomain, 91.52
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 91.36
3qii_A85 PHD finger protein 20; tudor domain, structural ge 91.31
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 90.81
3m9q_A101 Protein MALE-specific lethal-3; chromodomain, MSL3 90.58
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 90.4
2lcc_A76 AT-rich interactive domain-containing protein 4A; 89.97
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 89.79
2rnz_A94 Histone acetyltransferase ESA1; HAT, chromodomain, 89.74
2ro0_A92 Histone acetyltransferase ESA1; HAT, chromodomain, 89.71
3oa6_A110 MALE-specific lethal 3 homolog; chromodomain, MSL3 89.29
1wgs_A133 MYST histone acetyltransferase 1; tudor domain, MY 88.26
2lrq_A85 Protein MRG15, NUA4 complex subunit EAF3 homolog; 87.91
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 88.04
3m9q_A101 Protein MALE-specific lethal-3; chromodomain, MSL3 86.71
2e5q_A63 PHD finger protein 19; tudor domain, isoform B, st 85.93
2rnz_A94 Histone acetyltransferase ESA1; HAT, chromodomain, 85.75
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 85.33
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 84.0
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 83.55
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 83.46
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 83.08
3oa6_A110 MALE-specific lethal 3 homolog; chromodomain, MSL3 82.8
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 82.78
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 82.63
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 80.83
3m9p_A110 MALE-specific lethal 3 homolog; chromodomain, MSL3 80.35
2lrq_A85 Protein MRG15, NUA4 complex subunit EAF3 homolog; 80.36
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A Back     alignment and structure
Probab=100.00  E-value=1.6e-80  Score=565.27  Aligned_cols=230  Identities=32%  Similarity=0.578  Sum_probs=207.1

Q ss_pred             ccccCcccccEEEEEeCCCCCCCCCCCCCCCcEEEEEEEEEeCCEEEEEEcccCCCCCCCeeeeCCCCCeecccchhccC
Q psy6234           3 DCWENISVGMKVEVENTDTDTPSGNHDNYPDSFWVASVTQIAGYKALLRYEGFGEDSSKDFWVNLCSSMVHPVGWCATRG   82 (260)
Q Consensus         3 ~~~~~~~~GmklEv~~~~~~~~~~~~~~~p~~~wvA~V~~~~G~rl~lr~~G~~~d~~~dfW~~~~s~~ihPvGw~~~~g   82 (260)
                      ..++.|++|||||++|+          .||+.||||||++|+|+||+|||||++  +++|||||++|++|||||||++||
T Consensus        32 ~~~~~F~~GMKLE~~D~----------~~~~~~~vAtV~~v~G~rl~l~~dg~~--~~~dFW~~~~S~~IhPvGwc~~~g   99 (324)
T 3ut1_A           32 YNKNGFKVGMKLEGVDP----------EHQSVYCVLTVAEVCGYRIKLHFDGYS--DCYDFWVNADALDIHPVGWCEKTG   99 (324)
T ss_dssp             SSCCCCCTTCEEEEEET----------TEEEEEEEEEEEEEETTEEEEEETTSC--GGGCEEEETTCSSEECTTHHHHHT
T ss_pred             CcCCcccCCCEEEEecC----------CCCCcEEEEEEEEEECCEEEEEECCCC--CCCCEEEeCCCCCeeccchhHhcC
Confidence            45799999999999987          378899999999999999999999996  478999999999999999999999


Q ss_pred             CCCCCCCCCCCCcCcHHHHHHHHhcCCCCCCcccccccc-ccccCCCCCCcEEEEecCCCCCceEEEEEEeEeCCeEEEE
Q psy6234          83 KPLIPPRTIETKYSDWKDFLVKRLTGARTLPSNFYHKVQ-ESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVH  161 (260)
Q Consensus        83 ~~L~pP~~~~~~~~~W~~~L~~~~~~~~~~P~~~f~~~~-~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~rl~v~  161 (260)
                      +.|+||++|+.+.|+|.+||++  +++.+||.++|+..+ ....+.|++||||||+|++|+.+||||||++|+|+|++|+
T Consensus       100 ~~L~pP~g~~~~~f~W~~yL~~--~~a~~aP~~lF~~~~~~~~~~~F~vGMKLEavDp~~p~~icvATV~~V~g~~l~v~  177 (324)
T 3ut1_A          100 HKLHPPKGYKEEEFNWQTYLKT--CKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVH  177 (324)
T ss_dssp             CCEECCTTCCTTTCCHHHHHHH--TTCCBCCGGGCTTTTCCCCCCSCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred             eeccCCCCCcCCCCCHHHHHHH--hCcccCChHHcccCCCccCccccccCCEEEEecCCCCCcEEEEEEEEEECCEEEEE
Confidence            9999999999999999999987  799999999998643 3346899999999999999999999999999999999999


Q ss_pred             Eec--CCCCEEEEcCCCCceechhhhhcCCcccCCCCCcc-ccccc-c----CCCCCCccccCCCCCCCcCCCCCCCCCC
Q psy6234         162 YYD--DDDGFCCHQDSPLIHPVGWARRTGHLISAPPLYTD-RCAKG-I----RDRDDATEDLFPLSVGTAGTKLSPGTGQ  233 (260)
Q Consensus       162 ~~~--~~~~~w~~~~S~~I~PvGw~~~~g~~L~pP~~y~~-~~~~~-~----~~~~~a~~~~f~~~~~~~~~~~~~~~~~  233 (260)
                      |||  +.+|||||++|++|||||||++||++|+||+||.. ..+.| .    .+..+||.++|+.             .+
T Consensus       178 ~Dg~~~~~d~w~~~~Sp~I~PVGWCe~~g~~L~pP~gy~~~~~f~W~~YL~~t~a~aaP~~~F~~-------------~~  244 (324)
T 3ut1_A          178 FDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKV-------------KP  244 (324)
T ss_dssp             ETTSCGGGCEEECTTCTTEECTTHHHHTTCCEECCTTC--CCSCCHHHHHHHTTCCBCCGGGCCC-------------CC
T ss_pred             ECCCCCcCCEEEECCCCCcccCcHHHhcCCCCCCCCCCCCCCcccHHHHHHhhCCCCCCHHHhcc-------------cc
Confidence            999  67899999999999999999999999999999985 33332 2    2456788888863             35


Q ss_pred             CCCCCCCCEEEEecCCCCCCceeeee
Q psy6234         234 TGGFVVGMKLESVDPLNLSDIWKRQQ  259 (260)
Q Consensus       234 ~~~F~~GMKLEaVDp~~p~~IcvATv  259 (260)
                      .|+|++||||||||++||.+||||||
T Consensus       245 ~~~F~~gmkLEAvD~~~p~licvATV  270 (324)
T 3ut1_A          245 PHGFQKKMKLEVVDKRNPMFIRVATV  270 (324)
T ss_dssp             CCCCCTTCEEEEECSSSTTCEEEEEE
T ss_pred             cccCCCCCeeeccCCCCCCceeEEEE
Confidence            69999999999999999999999998
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Back     alignment and structure
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Back     alignment and structure
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens} Back     alignment and structure
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A Back     alignment and structure
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster} Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Back     alignment and structure
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A* Back     alignment and structure
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A Back     alignment and structure
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A* Back     alignment and structure
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A Back     alignment and structure
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A* Back     alignment and structure
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Back     alignment and structure
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Back     alignment and structure
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Back     alignment and structure
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3 Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Back     alignment and structure
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Back     alignment and structure
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A Back     alignment and structure
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 Back     alignment and structure
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0 Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A* Back     alignment and structure
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 Back     alignment and structure
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0 Back     alignment and structure
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A* Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d1oi1a2104 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sa 4e-33
d1oi1a2104 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sa 5e-23
d1oi1a2104 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sa 0.002
d1oi1a1103 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sap 1e-30
d1oi1a1103 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sap 2e-22
d1wjra_127 b.34.9.3 (A:) Scm-like with four MBT domains prote 1e-30
d1wjra_127 b.34.9.3 (A:) Scm-like with four MBT domains prote 1e-21
d1oz2a3106 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumo 4e-30
d1oz2a3106 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumo 2e-22
d1oz2a1110 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumo 1e-29
d1oz2a1110 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumo 2e-22
d1oz2a1110 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumo 0.004
d1oz2a2108 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumo 4e-28
d1oz2a2108 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumo 4e-20
d1wjsa_127 b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 1e-26
d1wjsa_127 b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 2e-22
d1wjqa_107 b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 8e-23
d1wjqa_107 b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 8e-22
d1wjqa_107 b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 0.002
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 4e-33
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 98  WKDFLVKRLTGARTLPSN-FYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGK 156
           W  FL++ L G+    +  F  +  +   + F+V M LE +DKK    +  ATI  + G 
Sbjct: 2   WPMFLLETLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGD 61

Query: 157 RLQVHY--YDDDDGFCCHQDSPLIHPVGWARRTGHLISAP 194
            + + +  +     + C  DS  I P GW R TG ++  P
Sbjct: 62  EVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPP 101
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d1oi1a1103 Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1oi1a2104 Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1oz2a3106 Lethal(3)malignant brain tumor-like protein {Human 100.0
d1oz2a2108 Lethal(3)malignant brain tumor-like protein {Human 100.0
d1oz2a1110 Lethal(3)malignant brain tumor-like protein {Human 100.0
d1wjsa_127 Lethal(3)malignant brain tumor-like 3 protein, L3M 100.0
d1wjra_127 Scm-like with four MBT domains protein 2, SFMBT2 ( 100.0
d1wjsa_127 Lethal(3)malignant brain tumor-like 3 protein, L3M 99.98
d1wjra_127 Scm-like with four MBT domains protein 2, SFMBT2 ( 99.97
d1wjqa_107 Lethal(3)malignant brain tumor-like 3 protein, L3M 99.96
d1oz2a3106 Lethal(3)malignant brain tumor-like protein {Human 99.96
d1oi1a1103 Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1oi1a2104 Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1oz2a2108 Lethal(3)malignant brain tumor-like protein {Human 99.96
d1oz2a1110 Lethal(3)malignant brain tumor-like protein {Human 99.95
d1wjqa_107 Lethal(3)malignant brain tumor-like 3 protein, L3M 99.95
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 93.28
d2f5ka183 Mortality factor 4-like protein 1, MRG15 {Human (H 92.92
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 91.24
d2f5ka183 Mortality factor 4-like protein 1, MRG15 {Human (H 89.23
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: MBT repeat
domain: Scml2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-39  Score=244.92  Aligned_cols=101  Identities=32%  Similarity=0.551  Sum_probs=96.0

Q ss_pred             CcHHHHHHHHhcCCCCCCccccccccccccCCCCCCcEEEEecCCCCCceEEEEEEeEeCCeEEEEEec--CCCCEEEEc
Q psy6234          96 SDWKDFLVKRLTGARTLPSNFYHKVQESVKSRFRVDMNLEVVDKKRISQVKVATIEKIVGKRLQVHYYD--DDDGFCCHQ  173 (260)
Q Consensus        96 ~~W~~~L~~~~~~~~~~P~~~f~~~~~~~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~g~rl~v~~~~--~~~~~w~~~  173 (260)
                      |||++||++  +|+.+||.++|++...+..++|++||||||+|+.++..||||||++|.|+|++|+|||  +.+|||||+
T Consensus         1 F~W~~YL~~--t~a~aaP~~~F~~~~~~~~~~f~~GmklEavd~~~~~~~~vAtV~~v~g~~~~l~~dG~~~~~dfw~~~   78 (103)
T d1oi1a1           1 FHWEEYLKE--TGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLV   78 (103)
T ss_dssp             CCHHHHHHH--TTCCBCCGGGSSSCSSCCCCCCCTTCEEEEEETTEEEEEEEEEEEEEETTEEEEEETTSCTTCCEEEET
T ss_pred             CChHHHHHH--hCCccCCHHHhcCCCCCCCcCcccCCEEEeEcCCCCCeEEEEEEEEeeCCEEEEEECCCCCcCCEEEEC
Confidence            799999987  8999999999988777778999999999999999999999999999999999999999  678999999


Q ss_pred             CCCCceechhhhhcCCcccCCCCCc
Q psy6234         174 DSPLIHPVGWARRTGHLISAPPLYT  198 (260)
Q Consensus       174 ~S~~I~PvGw~~~~g~~L~pP~~y~  198 (260)
                      +|++|||||||++||++|+||+||.
T Consensus        79 ~S~~i~PvGWc~~~g~~L~pP~gy~  103 (103)
T d1oi1a1          79 DSPDIQPVGTCEKEGDLLQPPLGYQ  103 (103)
T ss_dssp             TCTTEECTTHHHHTTCCCCCCTTCC
T ss_pred             CCCCeecCCHHHHcCCccCCcCCCC
Confidence            9999999999999999999999984
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3 protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure