Psyllid ID: psy6259

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
EIYPLACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG
cccccccccccccccccccccEEEEcccccccEEEccEEEEEEcccccEEEEcccccHHHHHHHHHHHHccccccEEEEcccEEEEcEEEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccccEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEcccccEEEEEEccccccccccccccccccccccEEEEEEccc
ccHHHHHcccccccccccccEEEEEccccccEEEEcccEEEEEccccEEEEEEccccHHHHHHHHHHHccHccEEEEEccccEEEEEEEEEcccEcccccccccHHHHHHHHHHHHHcccccccHHHHccccEEEEcccccccccccccccccccccEEEEEEEEHccccccccccccccccEEccccccEEEEEEcccccccccccccccccEEEccEEEEEcccc
eiyplacqgnlsvpedIKSNLKCFYESYnntflkigplkveelyldprvvkiHDAIYDSEINRIIELSkgkvergkvvnygdtiyvdtrlskvyflypeifgdhpfLYKIQTRIQDMTNLVigreerykgplqinnyglgghydlhcdatprdegLWRLASFMFYLTDvelggatifpslnltvfpekgsAVFWYNAHANTLLDYrmyhsgcpvalgnkwgkLLLSG
eiyplacqgnlsvpeDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHdaiydseinriielskgkvergkvvnygdtiyvdtrLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPValgnkwgklllsg
EIYPLACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG
****LACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLL***
EIYPLAC**************KCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKG****************DTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG
EIYPLACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG
EIYPLACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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EIYPLACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
Q5RAG8534 Prolyl 4-hydroxylase subu yes N/A 0.929 0.395 0.365 5e-35
P13674534 Prolyl 4-hydroxylase subu yes N/A 0.929 0.395 0.365 5e-35
Q1RMU3534 Prolyl 4-hydroxylase subu yes N/A 0.929 0.395 0.365 1e-34
Q60715534 Prolyl 4-hydroxylase subu yes N/A 0.929 0.395 0.360 6e-34
Q20065539 Prolyl 4-hydroxylase subu yes N/A 0.933 0.393 0.376 1e-33
P16924516 Prolyl 4-hydroxylase subu yes N/A 0.929 0.408 0.365 2e-33
P54001534 Prolyl 4-hydroxylase subu yes N/A 0.929 0.395 0.356 2e-33
Q5ZLK5534 Prolyl 4-hydroxylase subu no N/A 0.933 0.397 0.367 4e-33
O15460535 Prolyl 4-hydroxylase subu no N/A 0.938 0.398 0.353 1e-31
Q60716537 Prolyl 4-hydroxylase subu no N/A 0.938 0.396 0.353 2e-31
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function desciption
 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 19/230 (8%)

Query: 3   YPLACQGN-LSVPEDIKSNLKCFYESYN-NTFLKIGPLKVEELYLDPRVVKIHDAIYDSE 60
           Y + C+G  + +    +  L C Y   N N    + P K E+ +  PR+++ HD I D+E
Sbjct: 289 YEMLCRGEGIKMTPRRQKKLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAE 348

Query: 61  INRIIELSKGKVERGKVVN--YGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMT 118
           I  + +L+K ++ R  + N   GD   V  R+SK  +L      ++P + +I  RIQD+T
Sbjct: 349 IEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGY---ENPVVSRINMRIQDLT 405

Query: 119 NLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLW--------RLASFMFYLTDVE 170
            L +   E     LQ+ NYG+GG Y+ H D   +DE           R+A+++FY++DV 
Sbjct: 406 GLDVSTAEE----LQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVS 461

Query: 171 LGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKW 220
            GGAT+FP +  +V+P+KG+AVFWYN  A+   DY   H+ CPV +GNKW
Sbjct: 462 AGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKW 511
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Pongo abelii (taxid: 9601)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
347972274 514 AGAP004611-PA [Anopheles gambiae str. PE 0.929 0.410 0.418 1e-42
307190793 476 Prolyl 4-hydroxylase subunit alpha-2 [Ca 0.938 0.447 0.386 8e-42
347964867 553 AGAP000971-PA [Anopheles gambiae str. PE 0.938 0.385 0.395 2e-41
345481336 556 PREDICTED: prolyl 4-hydroxylase subunit 0.938 0.383 0.386 5e-41
91091610 536 PREDICTED: similar to prolyl 4-hydroxyla 0.938 0.397 0.4 6e-41
328790718 415 PREDICTED: prolyl 4-hydroxylase subunit 0.938 0.513 0.373 6e-41
380025232 537 PREDICTED: prolyl 4-hydroxylase subunit 0.938 0.396 0.373 7e-41
383864775 550 PREDICTED: prolyl 4-hydroxylase subunit 0.938 0.387 0.386 8e-41
350416719 557 PREDICTED: prolyl 4-hydroxylase subunit 0.938 0.382 0.378 1e-40
340722330 557 PREDICTED: prolyl 4-hydroxylase subunit 0.938 0.382 0.378 1e-40
>gi|347972274|ref|XP_001237637.3| AGAP004611-PA [Anopheles gambiae str. PEST] gi|333469330|gb|EAU76664.3| AGAP004611-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 131/227 (57%), Gaps = 16/227 (7%)

Query: 3   YPLACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSEIN 62
           YP  C+G+   P    + L+C YE     FL+I PLK++E+  DP +V  HD I + EI+
Sbjct: 272 YPSLCRGDDQRPAKELAKLRCRYEHNRTPFLRISPLKLQEVNHDPMIVMYHDVISNKEID 331

Query: 63  RIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVI 122
            II +SK  + R  V +  +     TR S   +L   +   HP +  +  R +DMTNL +
Sbjct: 332 AIISISKPLMHRSMVGDDHEKAVSKTRTSSNAWLDDVM---HPVVRTLSQRTEDMTNLAM 388

Query: 123 GREERYKGPLQINNYGLGGHYDLHCDATPRDEGLW---------RLASFMFYLTDVELGG 173
              ER    LQ+ NYG+GGHY  H D    +EG           R+A+ M+YL+DV +GG
Sbjct: 389 TAAER----LQVGNYGIGGHYLPHYDYAVAEEGKEVYPSIGKGNRIATVMYYLSDVAIGG 444

Query: 174 ATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKW 220
           AT+FP L L VFP+KGSA+FWYN HAN  +D+R  H  CPV +G+KW
Sbjct: 445 ATVFPQLGLGVFPQKGSAIFWYNLHANGTVDHRTLHGACPVFVGSKW 491

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307190793|gb|EFN74662.1| Prolyl 4-hydroxylase subunit alpha-2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|347964867|ref|XP_309164.4| AGAP000971-PA [Anopheles gambiae str. PEST] gi|333466515|gb|EAA04901.5| AGAP000971-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|345481336|ref|XP_001600680.2| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|91091610|ref|XP_969386.1| PREDICTED: similar to prolyl 4-hydroxylase alpha subunit 1, putative [Tribolium castaneum] gi|270001037|gb|EEZ97484.1| hypothetical protein TcasGA2_TC011321 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328790718|ref|XP_392392.4| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380025232|ref|XP_003696381.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Apis florea] Back     alignment and taxonomy information
>gi|383864775|ref|XP_003707853.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350416719|ref|XP_003491070.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722330|ref|XP_003399560.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-2-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
FB|FBgn0051014540 PH4alphaSG1 "prolyl-4-hydroxyl 0.933 0.392 0.392 6.1e-39
FB|FBgn0039776550 PH4alphaEFB "prolyl-4-hydroxyl 0.925 0.381 0.393 2.1e-36
FB|FBgn0039784547 CG9698 [Drosophila melanogaste 0.938 0.389 0.373 1.9e-35
FB|FBgn0051015525 PH4alphaPV "prolyl-4-hydroxyla 0.920 0.398 0.380 6.5e-35
ZFIN|ZDB-GENE-060929-954508 zgc:152670 "zgc:152670" [Danio 0.898 0.401 0.381 4.6e-34
UNIPROTKB|E2RLA2534 P4HA1 "Uncharacterized protein 0.929 0.395 0.369 5.8e-34
UNIPROTKB|P13674534 P4HA1 "Prolyl 4-hydroxylase su 0.929 0.395 0.369 5.8e-34
UNIPROTKB|I3L5Y0525 P4HA2 "Uncharacterized protein 0.969 0.419 0.375 5.8e-34
UNIPROTKB|A1X898534 P4HA1 "Uncharacterized protein 0.929 0.395 0.365 7.8e-34
UNIPROTKB|Q1RMU3534 P4HA1 "Prolyl 4-hydroxylase su 0.929 0.395 0.369 1.3e-33
FB|FBgn0051014 PH4alphaSG1 "prolyl-4-hydroxylase-alpha SG1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 89/227 (39%), Positives = 134/227 (59%)

Query:     1 EIYPLACQGNLSVPEDIKSNLKCFYESYNNTFLKIGPLKVEELYLDPRVVKIHDAIYDSE 60
             ++Y   C+G L      + NL+C+       + ++ P K+E+L +DP V  +H+ ++DSE
Sbjct:   290 KLYTEVCRGELHQSPREQRNLRCWLSHQGVPYYRLFPFKIEQLNIDPYVAYVHEVLWDSE 349

Query:    61 INRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNL 120
             I+ I+E  KG +ER KV    ++   + R+S+  +L+   +  +P+L KI+ R++D+T L
Sbjct:   350 IDTIMEHGKGNMERSKVGQSENSTTSEVRISRNTWLW---YDANPWLSKIKQRLEDVTGL 406

Query:   121 VIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGL----W---RLASFMFYLTDVELGG 173
                  E    PLQ+ NYG+GG Y+ H D    D+G     W   RL + +FYL DV LGG
Sbjct:   407 STESAE----PLQLVNYGIGGQYEPHFDFV-EDDGQSVFSWKGNRLLTALFYLNDVALGG 461

Query:   174 ATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKW 220
             AT FP L L V P KGS + WYN H++T  D+R  H+GCPV  G+KW
Sbjct:   462 ATAFPFLRLAVPPVKGSLLIWYNLHSSTHKDFRTKHAGCPVLQGSKW 508
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0016222 "procollagen-proline 4-dioxygenase complex" evidence=IC
GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0016702 "oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen" evidence=IEA
GO:0005506 "iron ion binding" evidence=IEA
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0007435 "salivary gland morphogenesis" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
FB|FBgn0039776 PH4alphaEFB "prolyl-4-hydroxylase-alpha EFB" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0039784 CG9698 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0051015 PH4alphaPV "prolyl-4-hydroxylase-alpha PV" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-954 zgc:152670 "zgc:152670" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLA2 P4HA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P13674 P4HA1 "Prolyl 4-hydroxylase subunit alpha-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L5Y0 P4HA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A1X898 P4HA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q1RMU3 P4HA1 "Prolyl 4-hydroxylase subunit alpha-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 2e-29
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 2e-14
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 2e-04
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information 
 Score =  107 bits (270), Expect = 2e-29
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 57  YDSEINRIIELSKGKVERGKVVNY--GDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRI 114
             +E  +++E ++    RG+V             R S   +L          + +I+ R+
Sbjct: 1   SPAECQKLLEEAEPLGWRGEVTRGIGNPNETSQYRQSNGTWLELL--ERDLVIERIRQRL 58

Query: 115 QDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRDEGLWRLASFMFYLTDVELGGA 174
            D   L+ G     +   Q+  YG GGHY  H D         R+A+F+ YL DVE GG 
Sbjct: 59  ADFLGLLAGLPLSAE-DAQVARYGPGGHYGPHVD---NFLYGDRIATFILYLNDVEEGGE 114

Query: 175 TIFPSLNL----TVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKW 220
            +FP L L    TV P+KG  +F+ + H       R  H  CPV  G++W
Sbjct: 115 LVFPGLRLMVVATVKPKKGDLLFFPSGHG------RSLHGVCPVTRGSRW 158

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591|consensus289 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.96
PHA02813 354 hypothetical protein; Provisional 99.77
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.77
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.71
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.67
KOG3710|consensus280 99.15
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.84
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.8
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.7
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.59
PHA02866 333 Hypothetical protein; Provisional 98.39
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.37
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 98.09
KOG3844|consensus 476 98.09
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 98.02
TIGR02466201 conserved hypothetical protein. This family consis 97.74
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 97.66
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.53
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 97.33
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 97.07
PHA02923 315 hypothetical protein; Provisional 96.53
COG3826236 Uncharacterized protein conserved in bacteria [Fun 95.93
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 94.87
KOG3200|consensus224 94.27
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 94.25
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 91.39
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 91.32
PF14033501 DUF4246: Protein of unknown function (DUF4246) 85.45
KOG3959|consensus306 84.75
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 81.81
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 80.41
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-53  Score=368.44  Aligned_cols=186  Identities=29%  Similarity=0.482  Sum_probs=173.5

Q ss_pred             eeCceEEEEeccCCcEEEEccCCCHHHHHHHHHHccCCeeecEEeecCCc--eeeeeeeeEEEEeCCCCCCCcHHHHHHH
Q psy6259          34 KIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDT--IYVDTRLSKVYFLYPEIFGDHPFLYKIQ  111 (227)
Q Consensus        34 ~~~P~k~e~ls~~p~I~~~~~fls~~Ec~~li~~~~~~~~~s~~~~~~~~--~~~~~R~s~~~~l~~~~~~~~~~~~~i~  111 (227)
                      ...|.|+|+||++|+|++|+||||++||++||+++++.+++|++.+...+  ..++.|+|+.+|+..   ..++++++|+
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~---~~dpvv~~I~  117 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDK---RQDPVVSRIE  117 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecC---CCCHHHHHHH
Confidence            35899999999999999999999999999999999999999998766544  567899999999987   5789999999


Q ss_pred             HHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCC----CCCceEEEEEEeecCCCCCceeeeCCC-------
Q psy6259         112 TRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRD----EGLWRLASFMFYLTDVELGGATIFPSL-------  180 (227)
Q Consensus       112 ~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~----~~~~R~~T~liYLnd~~~GGeT~Fp~~-------  180 (227)
                      +||.++++++..    ..|.+||+||++||+|++|+|++...    ..++|++|||+||||+++||||+||.+       
T Consensus       118 ~Ria~~t~lp~~----~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~  193 (310)
T PLN00052        118 ERIAAWTFLPEE----NAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQP  193 (310)
T ss_pred             HHHHHHhCCCcc----cCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccc
Confidence            999999999988    99999999999999999999998643    258999999999999999999999987       


Q ss_pred             -----------ceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259         181 -----------NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS  226 (227)
Q Consensus       181 -----------~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~  226 (227)
                                 +++|+|++|+||+|+|+.+||..|++++|+||||++|+||++++|+
T Consensus       194 ~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi  250 (310)
T PLN00052        194 KDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWI  250 (310)
T ss_pred             cccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEee
Confidence                       6999999999999999999999999999999999999999999997

>KOG1591|consensus Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>KOG3710|consensus Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG3844|consensus Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>KOG3200|consensus Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PF14033 DUF4246: Protein of unknown function (DUF4246) Back     alignment and domain information
>KOG3959|consensus Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 4e-19
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 6e-11
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 6e-11
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 6e-11
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 3e-10
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 14/180 (7%)
Query: 44  YLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDTIYVDTRLSKVYFLYPEIFGD 103
           + +P +V + + + D E + +IELSK K+ R KV +  D    D R S   FL      D
Sbjct: 36  FEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRDV--NDIRTSSGAFL-----DD 88
Query: 104 HPFLYKIQTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCD---ATPRDEGLWRLA 160
           +    KI+ RI  + N+     E     L I NY +   Y  H D      R     R++
Sbjct: 89  NELTAKIEKRISSIXNVPASHGE----GLHILNYEVDQQYKAHYDYFAEHSRSAANNRIS 144
Query: 161 SFMFYLTDVELGGATIFPSLNLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKW 220
           + + YL DVE GG T FP LNL+V P KG AV++   + +  L+    H G PV  G KW
Sbjct: 145 TLVXYLNDVEEGGETFFPKLNLSVHPRKGXAVYFEYFYQDQSLNELTLHGGAPVTKGEKW 204
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-66
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 6e-59
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
 Score =  203 bits (518), Expect = 2e-66
 Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 15/208 (7%)

Query: 18  KSNLKCFYESYNNTF-LKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGK 76
           ++  +  ++   N    +   +++   + +P +V + + + D E + +IELSK K+ R K
Sbjct: 9   ENKEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSK 68

Query: 77  VVNYGDTIYVDTRLSKVYFLYPEIFGDHPFLYKIQTRIQDMTNLVIGREERYKGPLQINN 136
           V +  D    D R S   FL      D+    KI+ RI  + N+     E     L I N
Sbjct: 69  VGSSRDV--NDIRTSSGAFL-----DDNELTAKIEKRISSIMNVPASHGE----GLHILN 117

Query: 137 YGLGGHYDLHCDATPRDE---GLWRLASFMFYLTDVELGGATIFPSLNLTVFPEKGSAVF 193
           Y +   Y  H D            R+++ + YL DVE GG T FP LNL+V P KG AV+
Sbjct: 118 YEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVY 177

Query: 194 WYNAHANTLLDYRMYHSGCPVALGNKWG 221
           +   + +  L+    H G PV  G KW 
Sbjct: 178 FEYFYQDQSLNELTLHGGAPVTKGEKWI 205
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.93
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.3
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.93
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 98.01
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.8
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 97.74
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.66
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 97.61
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.6
3nnf_A 344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 97.56
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.38
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 96.85
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.75
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 95.3
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 81.75
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.6e-51  Score=343.13  Aligned_cols=187  Identities=27%  Similarity=0.426  Sum_probs=172.9

Q ss_pred             eeeCceEEEEeccCCcEEEEccCCCHHHHHHHHHHccCCeeecEEeecCCc--eeeeeeeeEEEEeCCCCCCCcHHHHHH
Q psy6259          33 LKIGPLKVEELYLDPRVVKIHDAIYDSEINRIIELSKGKVERGKVVNYGDT--IYVDTRLSKVYFLYPEIFGDHPFLYKI  110 (227)
Q Consensus        33 l~~~P~k~e~ls~~p~I~~~~~fls~~Ec~~li~~~~~~~~~s~~~~~~~~--~~~~~R~s~~~~l~~~~~~~~~~~~~i  110 (227)
                      ..++|.|+|+||++|+|++++||||++||++|++++++.+++|++.++.++  ..+..|+|+.+|++.   .+++++++|
T Consensus         6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~---~~~~~~~~i   82 (224)
T 2jig_A            6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAK---GEDSVISKI   82 (224)
T ss_dssp             -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCT---TCSHHHHHH
T ss_pred             ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecC---CCCHHHHHH
Confidence            457899999999999999999999999999999999999999999877544  667899999999987   568999999


Q ss_pred             HHHHHhccCCCcccccccCCceEEEEeCCCCcceeeeeCCCCC------CCCceEEEEEEeecCCCCCceeeeCCC----
Q psy6259         111 QTRIQDMTNLVIGREERYKGPLQINNYGLGGHYDLHCDATPRD------EGLWRLASFMFYLTDVELGGATIFPSL----  180 (227)
Q Consensus       111 ~~ri~~~~g~~~~~~~~~~e~~~v~rY~~G~~y~~H~D~~~~~------~~~~R~~T~liYLnd~~~GGeT~Fp~~----  180 (227)
                      .+||.+++|++..    .+|.+||+||++|++|++|+|.+...      ..++|++|+++||||+++||||+||.+    
T Consensus        83 ~~ri~~~~gl~~~----~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~  158 (224)
T 2jig_A           83 EKRVAQVTMIPLE----NHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKV  158 (224)
T ss_dssp             HHHHHHHHTCCGG----GBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSCC
T ss_pred             HHHHHHHhCCCcc----cccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCccccc
Confidence            9999999999887    89999999999999999999997643      247999999999999999999999987    


Q ss_pred             -----------ceEEecccccEEEEEecCCCCCCCCccccccCCCccCeEEEEEecC
Q psy6259         181 -----------NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVALGNKWGKLLLS  226 (227)
Q Consensus       181 -----------~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~  226 (227)
                                 +++|+|++|+||+|+|+.+||.+|++++|+||||++|+||+++.|+
T Consensus       159 ~~~~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi  215 (224)
T 2jig_A          159 TGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWI  215 (224)
T ss_dssp             CSTTSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEE
T ss_pred             ccccccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeE
Confidence                       5899999999999999999999999999999999999999999997
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 98.21
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 98.01
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 97.44
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 97.1
d1otja_ 281 Taurine/alpha-ketoglutarate dioxygenase TauD {Esch 94.13
d1oiha_ 288 Putative alkylsulfatase AtsK {Pseudomonas putida [ 92.47
d1ds1a_323 Clavaminate synthase {Streptomyces clavuligerus [T 88.45
d1nx4a_271 Carbapenem synthase, CarC {Erwinia carotovora [Tax 87.66
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 87.33
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.9e-06  Score=66.53  Aligned_cols=163  Identities=17%  Similarity=0.120  Sum_probs=88.1

Q ss_pred             ccCCcEEEEccCCCHHHHHHHHHHccC----Ceeec--EEeec----CCc-eeeeeeeeEEEEeCCCCCCCcHHH-----
Q psy6259          44 YLDPRVVKIHDAIYDSEINRIIELSKG----KVERG--KVVNY----GDT-IYVDTRLSKVYFLYPEIFGDHPFL-----  107 (227)
Q Consensus        44 s~~p~I~~~~~fls~~Ec~~li~~~~~----~~~~s--~~~~~----~~~-~~~~~R~s~~~~l~~~~~~~~~~~-----  107 (227)
                      ..+.+ ++++++|++++|++|.+.++.    ...+.  .....    ... ............+.    ....+.     
T Consensus        20 ~~~Gy-vvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   94 (296)
T d2a1xa1          20 EENGF-LVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQ----EDKELFRYCTL   94 (296)
T ss_dssp             HHHSE-EEETTCSCHHHHHHHHHHHHHHHTTSCCCSSCEEECCEEECCCE-----EECCEEECCT----TSHHHHHHHHC
T ss_pred             HHCCE-EEccCcCCHHHHHHHHHHHHHHHhhccccccccccccccccccccCccccchhhhhhhh----hchhHHhhccc
Confidence            34566 589999999999999877642    11110  11000    000 00000011111111    122232     


Q ss_pred             HHHHHHHHhccCCCcccccccCCceEEEE-eCCCC---cceeeeeCCCCC-CCCceEEEEEEeecCCC-CCceeee-CCC
Q psy6259         108 YKIQTRIQDMTNLVIGREERYKGPLQINN-YGLGG---HYDLHCDATPRD-EGLWRLASFMFYLTDVE-LGGATIF-PSL  180 (227)
Q Consensus       108 ~~i~~ri~~~~g~~~~~~~~~~e~~~v~r-Y~~G~---~y~~H~D~~~~~-~~~~R~~T~liYLnd~~-~GGeT~F-p~~  180 (227)
                      ..|.+.+..++|-+..    ......+.+ .+.|+   ...||.|..... ......+++.|+|+|+. +.|.+.+ |..
T Consensus        95 ~~i~~~~~~llg~~~~----~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~~~~~~~~~~~wi~L~d~~~~nG~l~vipGS  170 (296)
T d2a1xa1          95 PEILKYVECFTGPNIM----AMHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGT  170 (296)
T ss_dssp             HHHHHHHHHHHCSSEE----EEEEEEEEECCC--------CCBCGGGGCCEECGGGEEEEEEESSCBCTTBTCEEECTTG
T ss_pred             HHHHHHHHHhhccccc----eecccccccccccccccccCCcccCccccccCCccccceeeEeeeeccccccccceeccc
Confidence            2344555666775543    222222223 23332   346999985432 23567889999999975 5677765 431


Q ss_pred             --------------------------------ceEEecccccEEEEEecCCCCCCCCccccccCCCcc-CeEEEEEe
Q psy6259         181 --------------------------------NLTVFPEKGSAVFWYNAHANTLLDYRMYHSGCPVAL-GNKWGKLL  224 (227)
Q Consensus       181 --------------------------------~~~v~P~~G~al~f~~~~~~g~~d~~~~H~g~pV~~-G~K~i~~~  224 (227)
                                                      .+.+.-++|++|||..         +++|++.|-.+ ..|++++.
T Consensus       171 Hk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~~---------~l~Hgs~~N~S~~~R~~l~~  238 (296)
T d2a1xa1         171 HKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHP---------LLIHGSGQNKTQGFRKAISC  238 (296)
T ss_dssp             GGSCCCCCCC-----------CCCCC-CCCSCCEEECBCTTCEEEECT---------TCCEEECCBCSSSCEEEEEE
T ss_pred             ccccccccccccccCCcccccccccchhhccceEEeeecCCcEEEECC---------CeeecCCCCCCcCceEEEEE
Confidence                                            1346678999999977         79999999665 57776654
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure