Psyllid ID: psy6263

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910---

MPEKIAVPDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRKKDKDD

cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccccccccccccEEEEcccEEcccccccccccccccccccccccEEEEEcccccc

ccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEccccccEEEEcccccHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccEEHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEccccccHHHccHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHccccEEEEEccccccccEEEEEccEEEEEcccccccEEEEEEcccccEEEEccccEEEcccccccccHHHcEEEEEEcccccc

mpekiavpdkdekvtkgkgeknpdemSEEDKRLQEDLNMLVEKikgsdkhlylPALESMRDLIRTsttsmtsvpmplKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWatnkyekpqLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLdkhmdvtnyprVCLYLSncalyveepersvitngvlnnylkfkeYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQItielpdempdkndlqIIMTNSHINDHFHSLAReldimepktpEEVYKTWLENIvlrptynldvpvdsarhNLASTFVNAFVNagfsrdklvsvedgnkwmyKNKQHGMLSAAASLGLIYLwdvdggltpidkylyTSEDYIKAGALLALGIVncgvrnecdPALALLSdyvlndsiTLRIGAVLGLGLAYAGTKRQEVVTLLLpvltdrkstpEVVAFAAVAASLIYVGTGYHEVASAILQTLIelpvselqdghysrfLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCsehytpttssakeetsatgtaasataggstestpaaaandkkekkdkeKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGqlgrygeptvrRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGlthmgkgtvslspfhtdrqilnPVALAGLLVVLTSFldtkniilgkSHYLLYCLVpamyprwlvtldenqepvsvSVRVGQAVdvigkagtpktiagvhthttPVLLAVGeraelatddyvpltpvmEGFVILRKKDKDD

mpekiavpdkdekvtkgkgeknpdemseedKRLQEDLNMLVEKikgsdkhlylPALESMRDLIRTSttsmtsvpmpLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPvltdrkstpEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTpttssakeetSATGTAasataggstestpaaaandkkekkDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKagtpktiagvhtHTTPVLLAVGERAELatddyvpltpvmEGFVILRKKDKDD

MPEKIAVPDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRtsttsmtsVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIgavlglglayagTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYtpttssakeetsatgtaasataggstestpaaaaNdkkekkdkekekdLSSMQavaalgvavvalgEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRKKDKDD

************************************************KHLYLPALESMRDLIRT****MTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPD*****NDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY*****************************************************AVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVIL*******

********************************LQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPD*N***************HSLARELDIMEPKTPEEVYKTWLENIVL************ARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYT*****************************************KEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVI*RK*****

*******************************RLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY**************************************************SMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRKKDKDD

*************************MSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLEN************VDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY***********************************************DLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRKK****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MPEKIAVPDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPxxxxxxxxxxxxxxxxxxxxxKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRKKDKDD

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		913	2.2.26 [Sep-21-2011]
Q5R9I6		908	26S proteasome non-ATPase	yes	N/A	0.959	0.964	0.564	0.0
Q4FZT9		908	26S proteasome non-ATPase	yes	N/A	0.961	0.966	0.563	0.0
Q13200		908	26S proteasome non-ATPase	yes	N/A	0.959	0.964	0.563	0.0
P56701		908	26S proteasome non-ATPase	yes	N/A	0.959	0.964	0.563	0.0
Q8VDM4		908	26S proteasome non-ATPase	yes	N/A	0.955	0.960	0.566	0.0
Q9SIV2		891	26S proteasome non-ATPase	yes	N/A	0.909	0.931	0.476	0.0
Q6XJG8		891	26S proteasome non-ATPase	no	N/A	0.911	0.933	0.461	0.0
Q7S8R8		902	26S proteasome regulatory	N/A	N/A	0.925	0.936	0.447	0.0
P87048		891	26S proteasome regulatory	yes	N/A	0.933	0.956	0.446	0.0
Q54BC6		893	26S proteasome non-ATPase	yes	N/A	0.897	0.917	0.439	0.0

>sp\|Q5R9I6\|PSMD2_PONAB 26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1	Back alignment and function desciption

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/910 (56%), Positives = 664/910 (72%), Gaps = 34/910 (3%)

Query: 8   PDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTST 67
           P   E+   G  +K   E+SEEDK+LQ++L MLVE++   D  LY PALE +R  IR+ST
Sbjct: 28  PSGKERRDAGDKDKE-QELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSST 86

Query: 68  TSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLM 127
           TSMTSVP PLKFLR HYG LKE  E M   + K+    IISVLAM+    E+ECLKY L+
Sbjct: 87  TSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSG-ERECLKYRLV 145

Query: 128 AKQKDVGDWGHEYVRQLEAEIAEEWA----TNKYEKPQLLELIEDIIQFDMKHNAEIQAC 183
             Q+++  WGHEYVR L  E+A+EW       K ++  LL L+++II ++M HNAE +AC
Sbjct: 146 GSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQREPLLTLVKEIIPYNMAHNAEHEAC 205

Query: 184 DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRA 243
           DLLMEI+ +++L+K +D   Y +VCLYL++C  YV EPE S +    L  + KF  +P A
Sbjct: 206 DLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEA 265

Query: 244 LTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSH 303
           L LAL LND   V  IF  C+D VV+KQ+A+M GR  + +EL +++ +  DL  IM+N  
Sbjct: 266 LRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQ 325

Query: 304 INDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVN 363
           +N +F +LARELDIMEPK P+++YKT LEN     + +    VDSAR NLAS+FVN FVN
Sbjct: 326 LNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGS---QVDSARMNLASSFVNGFVN 382

Query: 364 AGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIK 423
           A F +DKL++ +DGNKW+YKNK HGMLSAAASLG+I LWDVDGGLT IDKYLY+SEDYIK
Sbjct: 383 AAFGQDKLLT-DDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIK 441

Query: 424 AGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLL 483
           +GALLA GIVN GVRNECDPALALLSDYVL++S T+R+G++ GLGLAYAG+ R++V+TLL
Sbjct: 442 SGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLL 501

Query: 484 LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL 543
           LPV+ D KS+ EV    A+A  +I VG+   +V S ILQT++E   +EL+D  Y+R+LPL
Sbjct: 502 LPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKD-TYARWLPL 560

Query: 544 ALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY 603
            L + +LGK +AI+  LAALEV+ +PFRS A  ++ +CAYAGSG+VL VQ+ LH+CSEH+
Sbjct: 561 GLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHF 620

Query: 604 TPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGV 663
                   ++           A       PA                D+ + Q VA LG+
Sbjct: 621 DSKEKEEDKDKKEKKDKDKKEA-------PA----------------DMGAHQGVAVLGI 657

Query: 664 AVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDL 723
           A++A+GEEIG+EM+ R FG L RYGEPT+RRAVPLA+AL S+SNP LN++D L+K+SHD 
Sbjct: 658 ALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDA 717

Query: 724 DEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVS 783
           D EV++N+IF+MG+VG+GTNNARLA MLRQLAQYH K+  +LFMVR+AQGLTH+GKGT++
Sbjct: 718 DPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLT 777

Query: 784 LSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQ 843
           L P+H+DRQ+++ VA+AGLL VL SFLD +NIILGKSHY+LY LV AM PR LVT DE  
Sbjct: 778 LCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEEL 837

Query: 844 EPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGF 903
            P+ VSVRVGQAVDV+G+AG PKTI G  THTTPVLLA GERAELAT++++P+TP++EGF
Sbjct: 838 RPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGF 897

Query: 904 VILRKKDKDD 913
           VILRK    D
Sbjct: 898 VILRKNPNYD 907

Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
Pongo abelii (taxid: 9601)

>sp\|Q4FZT9\|PSMD2_RAT 26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1	Back alignment and function description

>sp\|Q13200\|PSMD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3	Back alignment and function description

>sp\|P56701\|PSMD2_BOVIN 26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2	Back alignment and function description

>sp\|Q8VDM4\|PSMD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1	Back alignment and function description

>sp\|Q9SIV2\|RPN1A_ARATH 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2	Back alignment and function description

>sp\|Q6XJG8\|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis thaliana GN=RPN1B PE=2 SV=1	Back alignment and function description

>sp\|Q7S8R8\|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpn-1 PE=3 SV=2	Back alignment and function description

>sp\|P87048\|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn1 PE=1 SV=2	Back alignment and function description

>sp\|Q54BC6\|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		913
328716936		894	PREDICTED: 26S proteasome non-ATPase reg	0.975	0.996	0.727	0.0
91075936		887	PREDICTED: similar to AGAP002481-PA [Tri	0.933	0.960	0.581	0.0
427785425		892	Putative 26s proteasome regulatory compl	0.970	0.993	0.565	0.0
348537734		906	PREDICTED: 26S proteasome non-ATPase reg	0.963	0.971	0.576	0.0
62751452		897	proteasome (prosome, macropain) 26S subu	0.951	0.968	0.569	0.0
259155094		898	26S proteasome non-ATPase regulatory sub	0.951	0.967	0.573	0.0
410910650		903	PREDICTED: 26S proteasome non-ATPase reg	0.947	0.957	0.573	0.0
41054527		897	26S proteasome non-ATPase regulatory sub	0.964	0.982	0.563	0.0
332023780		893	26S proteasome non-ATPase regulatory sub	0.962	0.984	0.581	0.0
383848632		891	PREDICTED: 26S proteasome non-ATPase reg	0.966	0.989	0.569	0.0

>gi\|328716936\|ref\|XP_001945112.2\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score = 1317 bits (3408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/897 (72%), Positives = 756/897 (84%), Gaps = 6/897 (0%)

Query: 18  KGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPL 77
           K EK  +EMSEEDKRL+E+L+MLV++I   D  LY  ALE++R LIRTSTTSMTSVP+PL
Sbjct: 3   KAEKKTEEMSEEDKRLEEELHMLVDRILEKDASLYELALETLRKLIRTSTTSMTSVPLPL 62

Query: 78  KFLRNHYGALKEACEKM-TDQKPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDW 136
           KFLR++Y  LKE C+ + TD+K K LLCS++S+LAM QD   ++ L+YCL A + DVGDW
Sbjct: 63  KFLRSYYARLKERCDTIETDEKTKALLCSVVSILAMGQDRNLRDTLRYCLRAGEVDVGDW 122

Query: 137 GHEYVRQLEAEIAEEWATNKYEKPQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLD 196
           GHEYVRQLEAEIAE+W +++  + QLL LI+ I+ FDMKHNAEIQACDLLMEID L+LL 
Sbjct: 123 GHEYVRQLEAEIAEQWNSDQENRNQLLSLIKKIVAFDMKHNAEIQACDLLMEIDRLDLL- 181

Query: 197 KHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEPSV 256
             +D +NY +VCLYL NC++Y  EPER+ I N V+ +Y+ F+EYPRAL LA+ +ND  ++
Sbjct: 182 -QVDKSNYLKVCLYLINCSIYAVEPERTNIYNEVMKHYMNFEEYPRALCLAMSVNDTDTM 240

Query: 257 LKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELD 316
            KIF  C+DPVVRKQLAYM GRQ + +EL DE  DK DL  IM+NSHIN+HF+SLARELD
Sbjct: 241 TKIFVACQDPVVRKQLAYMLGRQYVGLELNDEPKDKADLTNIMSNSHINEHFNSLARELD 300

Query: 317 IMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED 376
           I+EPKTP++VYKTWLE +VLRP+YNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED
Sbjct: 301 ILEPKTPDDVYKTWLEGLVLRPSYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED 360

Query: 377 GNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIKAGALLALGIVNCG 436
           GNKWMYKNKQHGMLSAAASLGLI+LWDV GGLTPIDKYLYTSE+YIKAGALLALGIVN G
Sbjct: 361 GNKWMYKNKQHGMLSAAASLGLIHLWDVHGGLTPIDKYLYTSEEYIKAGALLALGIVNVG 420

Query: 437 VRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKSTPEV 496
           VRNECDPA +LLSDYVL++S+ LRIGAVLGLGLAYAGT+RQ+V+TLLLPV+++ KSTPEV
Sbjct: 421 VRNECDPAYSLLSDYVLHESVLLRIGAVLGLGLAYAGTRRQDVITLLLPVMSNNKSTPEV 480

Query: 497 VAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAI 556
           VA AA++  +I VG    +V S ILQTL++LP +ELQDGHYSRFLPLAL + YLG KD  
Sbjct: 481 VALAALSCGMISVGAANQDVISTILQTLVDLPSTELQDGHYSRFLPLALGLCYLGLKDKA 540

Query: 557 DTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSA 616
           D     L  L DPF+SMAKM +KMCA AGSGDVL +QE LH+CSEHYTP   + KEE S 
Sbjct: 541 DALDGDLNALADPFKSMAKMTVKMCACAGSGDVLTIQELLHICSEHYTP---APKEEVSK 597

Query: 617 TGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEM 676
             +          E+T +A    +KEK  +   KDLS+MQAVAAL VAVVA+GE+ GSEM
Sbjct: 598 KQSEKKDKDSDKKETTTSAEKEKEKEKNKETASKDLSTMQAVAALAVAVVAMGEDTGSEM 657

Query: 677 STRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHNAIFSMG 736
            TRIFGQLGRYGEP VRRAVPLAIAL S+SNP +N+IDVLNKYSHDLDEEVAHNAIFSMG
Sbjct: 658 CTRIFGQLGRYGEPPVRRAVPLAIALLSISNPQMNIIDVLNKYSHDLDEEVAHNAIFSMG 717

Query: 737 LVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNP 796
           LVGAGTNNARLATMLRQLAQYH KNTGHLFMVRIAQGLTHMGKGT+SLSPFHTDRQ++NP
Sbjct: 718 LVGAGTNNARLATMLRQLAQYHAKNTGHLFMVRIAQGLTHMGKGTLSLSPFHTDRQVMNP 777

Query: 797 VALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAV 856
           VA++GLL+ L SFLDT+NIILGKSHYLLY LV AMYPRWLVTLDE+ EP+ VSVRVGQAV
Sbjct: 778 VAVSGLLITLFSFLDTRNIILGKSHYLLYTLVVAMYPRWLVTLDEDLEPLPVSVRVGQAV 837

Query: 857 DVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEGFVILRKKDKDD 913
           DVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATD+Y  LTPVMEGFVILRKK +++
Sbjct: 838 DVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDEYKCLTPVMEGFVILRKKQENE 894

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|91075936\|ref\|XP_967560.1\| PREDICTED: similar to AGAP002481-PA [Tribolium castaneum] gi\|270014631\|gb\|EFA11079.1\| hypothetical protein TcasGA2_TC004675 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|427785425\|gb\|JAA58164.1\| Putative 26s proteasome regulatory complex subunit rpn1/psmd2 [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|348537734\|ref\|XP_003456348.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2-like [Oreochromis niloticus]	Back alignment and taxonomy information

>gi\|62751452\|ref\|NP_001015819.1\| proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Xenopus (Silurana) tropicalis] gi\|59808953\|gb\|AAH90101.1\| proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Xenopus (Silurana) tropicalis]	Back alignment and taxonomy information

>gi\|259155094\|ref\|NP_001158789.1\| 26S proteasome non-ATPase regulatory subunit 2 [Salmo salar] gi\|223647426\|gb\|ACN10471.1\| 26S proteasome non-ATPase regulatory subunit 2 [Salmo salar]	Back alignment and taxonomy information

>gi\|410910650\|ref\|XP_003968803.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2-like [Takifugu rubripes]	Back alignment and taxonomy information

>gi\|41054527\|ref\|NP_956840.1\| 26S proteasome non-ATPase regulatory subunit 2 [Danio rerio] gi\|33989490\|gb\|AAH56516.1\| Proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Danio rerio]	Back alignment and taxonomy information

>gi\|332023780\|gb\|EGI64004.1\| 26S proteasome non-ATPase regulatory subunit 2 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|383848632\|ref\|XP_003699952.1\| PREDICTED: 26S proteasome non-ATPase regulatory subunit 2-like [Megachile rotundata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		913
ZFIN\|ZDB-GENE-040426-1480		897	psmd2 "proteasome (prosome, ma	0.645	0.656	0.53	4.5e-255
UNIPROTKB\|Q5R9I6		908	PSMD2 "26S proteasome non-ATPa	0.640	0.644	0.530	4.6e-253
UNIPROTKB\|Q13200		908	PSMD2 "26S proteasome non-ATPa	0.640	0.644	0.528	5.9e-253
RGD\|1305752		908	Psmd2 "proteasome (prosome, ma	0.651	0.655	0.526	7.5e-253
UNIPROTKB\|P56701		908	PSMD2 "26S proteasome non-ATPa	0.640	0.644	0.528	7.5e-253
UNIPROTKB\|I3LEW5		908	PSMD2 "Uncharacterized protein	0.640	0.644	0.528	7.5e-253
MGI\|MGI:1096584		908	Psmd2 "proteasome (prosome, ma	0.640	0.644	0.530	1.2e-252
UNIPROTKB\|E2RCP9		908	PSMD2 "Uncharacterized protein	0.651	0.655	0.522	2.5e-252
FB\|FBgn0028695		919	Rpn1 "Regulatory particle non-	0.641	0.637	0.483	7.9e-238
UNIPROTKB\|E7EW34		778	PSMD2 "26S proteasome non-ATPa	0.526	0.618	0.540	2.3e-229

ZFIN\|ZDB-GENE-040426-1480 psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1583 (562.3 bits), Expect = 4.5e-255, Sum P(2) = 4.5e-255
 Identities = 318/600 (53%), Positives = 422/600 (70%)

Query:     9 DKDEKVT-KGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRXXX 67
             +KD++   K K +K   E+SEEDK+LQE+L MLVE++   D  LY PALE +R  IR   
Sbjct:    17 EKDKQPAGKDKDKKEEQELSEEDKQLQEELEMLVERLGEKDTSLYRPALEELRRQIRSST 76

Query:    68 XXXXXVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNVEQECLKYCLM 127
                  VP PLKFLR HY  LK+  + MT  + K     ++SVLAM+  N E+ECLKY L+
Sbjct:    77 TSMTSVPKPLKFLRPHYAKLKDIYQNMTAGENKHFCADVVSVLAMTMSN-ERECLKYRLL 135

Query:   128 AKQKDVGDWGHEYVRQLEAEIAEEWAT----NKYEKPQLLELIEDIIQFDMKHNAEIQAC 183
               Q+++  WGHEYVR L  E+A+EW      +K ++  LL+L+++I+ ++M HNAE +AC
Sbjct:   136 GSQEELASWGHEYVRHLAGEVAKEWQEIEEGDKAQQEVLLKLVKEIVPYNMAHNAEHEAC 195

Query:   184 DLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRA 243
             DLLMEI+ L++LD ++D   Y +VCLYL++C  YV EPE S +    LN + KF  YP A
Sbjct:   196 DLLMEIERLDMLDSYIDENAYAKVCLYLTSCVSYVPEPENSALLKCALNIFRKFNRYPEA 255

Query:   244 LTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSH 303
             L LAL LND   V  IF  C+D V++KQ+A+M GR  + +EL +++ D  DL  IM+N  
Sbjct:   256 LRLALMLNDVELVENIFTSCKDIVIQKQMAFMLGRHGMFLELNEDVEDYEDLTEIMSNVQ 315

Query:   304 INDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFVN 363
             +N +F +LARELDIMEPK P+++YKT LEN     + +    VDSAR NLAS+FVN FVN
Sbjct:   316 LNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGS---QVDSARMNLASSFVNGFVN 372

Query:   364 AGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYIK 423
             A F +DKL++ EDGNKW+YKNK HGMLSAAASLG+I LWDVDGGLT IDKYLY+SEDYIK
Sbjct:   373 AAFGQDKLLT-EDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIK 431

Query:   424 AGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIXXXXXXXXXXXXTKRQEVVTLL 483
             +GALLA GIVN GVRNECDPALALLSDYVL++S  +RI            + R++V++LL
Sbjct:   432 SGALLACGIVNSGVRNECDPALALLSDYVLHNSNIMRIGAIFGLGLAYAGSNREDVLSLL 491

Query:   484 LPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPL 543
             LPV+ D KS+ EV    A+A  +I VG+   +V S ILQT++E    EL+D   +R+LPL
Sbjct:   492 LPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSEQELKDT-CARWLPL 550

Query:   544 ALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHY 603
              L + +LGK +AI+TTLAAL+V+P+PFRS    ++ +CAYAGSG+VL VQ+ LH+CSEH+
Sbjct:   551 GLGLNHLGKGEAIETTLAALQVVPEPFRSFGNTLVDVCAYAGSGNVLKVQQLLHICSEHF 610

GO:0042176 "regulation of protein catabolic process" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0030234 "enzyme regulator activity" evidence=IEA

UNIPROTKB\|Q5R9I6 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13200 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1305752 Psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P56701 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LEW5 PSMD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1096584 Psmd2 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCP9 PSMD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

FB\|FBgn0028695 Rpn1 "Regulatory particle non-ATPase 1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EW34 PSMD2 "26S proteasome non-ATPase regulatory subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4FZT9	PSMD2_RAT	No assigned EC number	0.5633	0.9616	0.9669	yes	N/A
Q54BC6	PSMD2_DICDI	No assigned EC number	0.4390	0.8970	0.9171	yes	N/A
Q5R9I6	PSMD2_PONAB	No assigned EC number	0.5648	0.9594	0.9647	yes	N/A
P87048	RPN1_SCHPO	No assigned EC number	0.4466	0.9331	0.9562	yes	N/A
Q13200	PSMD2_HUMAN	No assigned EC number	0.5637	0.9594	0.9647	yes	N/A
Q8SS65	RPN1_ENCCU	No assigned EC number	0.2647	0.8532	0.9798	yes	N/A
P56701	PSMD2_BOVIN	No assigned EC number	0.5637	0.9594	0.9647	yes	N/A
Q9SIV2	RPN1A_ARATH	No assigned EC number	0.4760	0.9090	0.9315	yes	N/A
Q8VDM4	PSMD2_MOUSE	No assigned EC number	0.5662	0.9550	0.9603	yes	N/A
P38764	RPN1_YEAST	No assigned EC number	0.3798	0.9441	0.8680	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		913
COG5110		881	COG5110, RPN1, 26S proteasome regulatory complex c	0.0
COG5116		926	COG5116, RPN2, 26S proteasome regulatory complex c	1e-14
pfam01851		35	pfam01851, PC_rep, Proteasome/cyclosome repeat	6e-05
pfam01851		35	pfam01851, PC_rep, Proteasome/cyclosome repeat	0.002

>gnl\|CDD\|227441 COG5110, RPN1, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  788 bits (2037), Expect = 0.0
 Identities = 359/910 (39%), Positives = 517/910 (56%), Gaps = 57/910 (6%)

Query: 8   PDKDEKVTKGKGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTST 67
           P+K     K K ++  +++SEED  L+ DL +LVE+I+  D  L   +L  ++++I++ST
Sbjct: 20  PEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSST 79

Query: 68  TSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNV-EQECLKYCL 126
           +SMT+VP PLKFLR +Y  L E  +K  +   K+ L  I+S L M      + + L Y L
Sbjct: 80  SSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADILSALCMVYSENGKHKSLAYRL 139

Query: 127 MAKQKDVGDWGHEYVRQLEAEIAEEWAT-NKYEKP---QLLELIEDIIQFDMKHNAEIQA 182
                D+ +WGHEYVR L  EIAE     N+ + P      +L  +I+ F +KHNAE  A
Sbjct: 140 EGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDA 199

Query: 183 CDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPR 242
            DLL+E+  +E +   +D  NY RVCLYL +C   +  PE   +    L  YLK  +  R
Sbjct: 200 IDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTR 259

Query: 243 ALTLALQLNDEPSVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNS 302
           A+  A++L     +++  +  EDP  +KQ  Y+  RQ +  E  DE     + + I++N 
Sbjct: 260 AVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASDE-----EEKDILSNG 314

Query: 303 HINDHFHSLARELDIMEPKTPEEVYKTWLENIVLRPTYNLDVPVDSARHNLASTFVNAFV 362
           +++DHF  L +EL++ +PK PE++ K  L+    + T  L   + SA  NLA  FVN  +
Sbjct: 315 YLSDHFRYLGKELNLDKPKVPEDILKGHLKYD--KDTRQL-AGIGSANQNLAMGFVNDPI 371

Query: 363 NAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYLYTSEDYI 422
           N G+  D L+ ++D  +W+YK K  G++SA AS+G+I  W+ D GL  +DKYLY  E Y 
Sbjct: 372 NLGYENDSLIPLDD--EWIYKCKVPGLISAFASIGVIESWNSDKGLETLDKYLYADESYR 429

Query: 423 KAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTL 482
           KAGALL +G+    V  E  PALALLS+Y+ + S    I A+LGLG A++GT+ +EV+ L
Sbjct: 430 KAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLEL 489

Query: 483 LLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLP 542
           L P++    S  EVV FA++    ++VGT   ++ S ILQT +E    E +   + RFL 
Sbjct: 490 LQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESET-QWFRFLA 548

Query: 543 LALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEH 602
           L LA  + G+KD +D     +  +        ++++K C Y G+GDVLV+Q  LHV  E 
Sbjct: 549 LGLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGDVLVIQSLLHVKDE- 607

Query: 603 YTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAVAALG 662
              T  + K E                                       + ++++A LG
Sbjct: 608 --FTGDTLKNEE--------------------------------------ALIESLALLG 627

Query: 663 VAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHD 722
            A++A+GE+IGSEM  R F     YG   +R  +PLA  + S SNP +NV D L + SHD
Sbjct: 628 CALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHD 687

Query: 723 LDEEVAHNAIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTV 782
            D  V  N IF+MGL+GAGT NARLA +LRQLA Y+ K +  LF++RIAQGL  +GKGT+
Sbjct: 688 GDLNVIINTIFAMGLIGAGTLNARLAQLLRQLASYYYKESKALFVLRIAQGLLSLGKGTM 747

Query: 783 SLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDEN 842
           ++SP + D+  L P   AGL   +   LD+    L  SH L+Y L+  + P+  VTL E 
Sbjct: 748 TISPLYFDKTTLMPKNTAGLFTTVFMLLDSSIFPLVSSHALMYFLLCQIRPQKYVTLSEK 807

Query: 843 QEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELATDDYVPLTPVMEG 902
            EP+ V+VRVGQAV+ +G+AG PK I G  THTTPVLL+  ERAEL TD+Y   T  +EG
Sbjct: 808 GEPIKVNVRVGQAVNTVGQAGRPKKITGWQTHTTPVLLSHKERAELDTDEYNVCTSYIEG 867

Query: 903 FVILRKKDKD 912
            VIL+K    
Sbjct: 868 VVILKKNPDY 877

Length = 881

>gnl\|CDD\|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat	Back alignment and domain information

>gnl\|CDD\|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		913
KOG2005\|consensus		878		100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG2062\|consensus		929		100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
KOG2005\|consensus		878		100.0
KOG2062\|consensus		929		100.0
COG5116		926	RPN2 26S proteasome regulatory complex component [	100.0
COG5110		881	RPN1 26S proteasome regulatory complex component [	100.0
KOG1858\|consensus		1496		99.97
KOG1858\|consensus		1496		99.29
PRK09687		280	putative lyase; Provisional	98.82
PRK09687		280	putative lyase; Provisional	98.75
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.63
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.46
TIGR02270		410	conserved hypothetical protein. Members are found	97.73
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.71
TIGR02270		410	conserved hypothetical protein. Members are found	97.32
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.28
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.06
PF01851		35	PC_rep: Proteasome/cyclosome repeat; InterPro: IPR	97.03
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.76
KOG2171\|consensus		1075		96.72
KOG0567\|consensus		289		96.63
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.41
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.01
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	95.8
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	95.01
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.93
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.74
KOG0567\|consensus		289		94.42
PTZ00429		746	beta-adaptin; Provisional	94.39
KOG1078\|consensus		865		94.23
PRK11788		389	tetratricopeptide repeat protein; Provisional	93.91
KOG2171\|consensus		1075		93.91
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	93.89
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.87
KOG0166\|consensus		514		93.77
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	93.17
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	90.93
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	90.47
PRK12370		553	invasion protein regulator; Provisional	90.12
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	89.83
KOG0915\|consensus		1702		89.35
PRK11788		389	tetratricopeptide repeat protein; Provisional	88.49
PTZ00429		746	beta-adaptin; Provisional	87.56
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	86.77
KOG1824\|consensus		1233		86.5
KOG0166\|consensus		514		86.02
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	84.84
PF05004		309	IFRD: Interferon-related developmental regulator (	84.47
KOG2259\|consensus		823		81.83
KOG2023\|consensus		885		80.81
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	80.24

>KOG2005\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.2e-237  Score=1960.71  Aligned_cols=840  Identities=56%  Similarity=0.903  Sum_probs=809.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCC
Q psy6263          18 KGEKNPDEMSEEDKRLQEDLNMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQ   97 (913)
Q Consensus        18 ~~~~~~~~lse~d~~~k~~l~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~   97 (913)
                      |+++|+++|||||+|||++||++|+|++|+|++|+++||++|+++||+|||||||||||||||||||+.|+++|++|.++
T Consensus        31 k~~~k~e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~  110 (878)
T KOG2005|consen   31 KDKDKEEDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADS  110 (878)
T ss_pred             ccchhhhhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCc
Confidence            46667899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHHHHHheeccCcCchhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc--cC-ChhHHHHHHHHHHHHHh
Q psy6263          98 KPKKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN--KY-EKPQLLELIEDIIQFDM  174 (913)
Q Consensus        98 ~~r~l~a~i~S~l~~~~~~~~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~--~~-~~~~L~~lv~~iv~~~l  174 (913)
                      ..|+++|||+|+++||++ +..+.|+|||.|+..++++|||||||||++||.++|+++  ++ ..+++..++.+||+|+|
T Consensus       111 n~Kk~laDIlSvLamt~s-e~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~m  189 (878)
T KOG2005|consen  111 NLKKWLADILSVLAMTMS-ERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHM  189 (878)
T ss_pred             hhHhHHHHHHHHHheeec-ccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHH
Confidence            899999999999999999 888899999999999999999999999999999999997  33 36899999999999999


Q ss_pred             ccCCHHHHHHHHHhhCchhhHHHHHhccChHHHHHHHHhhcccCCChhhHHHHHHHHHHHhccCCHHHHHHHHHhcCCch
Q psy6263         175 KHNAEIQACDLLMEIDHLELLDKHMDVTNYPRVCLYLSNCALYVEEPERSVITNGVLNNYLKFKEYPRALTLALQLNDEP  254 (913)
Q Consensus       175 ~~n~e~eAidlalE~~~ld~i~~~v~~~~~~ri~~Yl~~~~~~~~~~~~~~vl~~~~~iy~~~~~~~~al~~al~L~d~~  254 (913)
                      +||+|.||||+++|++++|++.+|||++||.|+|+|+.+|++|+|.|++..++++++.||+|+++|++|+++|++++|.+
T Consensus       190 kHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~  269 (878)
T KOG2005|consen  190 KHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMK  269 (878)
T ss_pred             hccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhccCChhHHHHHHHHHhhccccccCCCCCCCchhHHHhhcCccchhhhhhhhhhhcccCCCChHHHHHHHhhhh
Q psy6263         255 SVLKIFQLCEDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEVYKTWLENI  334 (913)
Q Consensus       255 ~v~~i~~~~~d~~~~~Qiaf~lar~~~~~~~~~~~~~~~~l~~il~N~~l~~~f~~l~k~ldil~~k~~~diyk~~L~~~  334 (913)
                      .|+++|.+|+|++++||+||+||||+++++..+    ++.+++|++|.+++++|++++|+++|++||+||||||+|++++
T Consensus       270 ~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~----~e~l~di~sN~~Lse~f~~LarELeimepk~pedIyK~hl~~~  345 (878)
T KOG2005|consen  270 EVKEVFTSCTDPLLKKQMAYMLARHGIYFELSE----DEELQDILSNGKLSEHFLYLARELEIMEPKVPEDIYKSHLEDS  345 (878)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCceecCc----CHHHHHHHccccHHHHHHHHHHHhcccCCCChHHHHHHHHhcc
Confidence            999999999999999999999999999998653    4679999999999999999999999999999999999999987


Q ss_pred             cCCCCCCCCCccchhhhhHHHHHHHHHHhcccCccccccccc--CCcccccccchhhHHHHHHhhhhhcccCCCcccccc
Q psy6263         335 VLRPTYNLDVPVDSARHNLASTFVNAFVNAGFSRDKLVSVED--GNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPID  412 (913)
Q Consensus       335 ~~~~~~~~~~~~dsar~~lA~~~~naf~naG~~~D~~l~~~~--~~~wl~k~~~~~k~sA~aslGlI~~~~~~~~l~~l~  412 (913)
                        |..  .+..+||||||+|++|||||||+|||+|++|.+.+  ...|+|||+++++.+|+||+|+|.+||+|.|+++++
T Consensus       346 --r~~--s~a~vdSarqnla~~fvNgFVn~Gyg~Dkl~~~~~~s~~~w~yknke~g~~sa~aS~G~I~~Wnvd~gL~qld  421 (878)
T KOG2005|consen  346 --RGG--SGAGVDSARQNLAATFVNGFVNAGYGQDKLMLVQEGSRVNWLYKNKEHGMTSAAASLGMIQLWNVDKGLEQLD  421 (878)
T ss_pred             --ccc--cccCccHHHHHHHHHHHHHHhhcccCCCceeccCccccCcceeeccccCchHhhhhcchhheecchhhHHHHH
Confidence              732  36779999999999999999999999999998533  468999999999999999999999999999999999


Q ss_pred             ccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCHHHHHHHHHhhcCCCC
Q psy6263         413 KYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQEVVTLLLPVLTDRKS  492 (913)
Q Consensus       413 ~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e~v~e~L~~~L~d~~~  492 (913)
                      +|||++++|+++||++|+|++++|+++||||++++|++|+.+++..+++||+||||++|+||+|+++...|.|++.|++.
T Consensus       422 kylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~~~  501 (878)
T KOG2005|consen  422 KYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDTKS  501 (878)
T ss_pred             HHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCCChhhh
Q psy6263         493 TPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRS  572 (913)
Q Consensus       493 ~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~~pi~r  572 (913)
                      ++|+.++|+|+||+||+||||+++...|++.+++++++++.+ .+.||+++|||++|+|++|+++++.+.++++++|+.+
T Consensus       502 ~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d-~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~  580 (878)
T KOG2005|consen  502 PMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELED-QWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRK  580 (878)
T ss_pred             chhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhc-hHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHH
Confidence            899999999999999999999999999999999998888887 9999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHH--HHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhhhhh
Q psy6263         573 MAKMMLKMCAYAGSGDVLVV--QEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEK  650 (913)
Q Consensus       573 ~~~~~~lglAyaGTGn~~~I--q~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (913)
                      +..+++.+|||+||||+.+|  |.++|+|.+|...                                            .
T Consensus       581 ~~~~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~--------------------------------------------~  616 (878)
T KOG2005|consen  581 HESILVKSCAYAGTGNVLKIQSQLLLSFCGEHDAD--------------------------------------------L  616 (878)
T ss_pred             HHHHHHHHhhccccCceEEechhhhhhhcCCCccc--------------------------------------------h
Confidence            99999999999999999999  9999999988641                                            1


Q ss_pred             hhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhccCccHHHHHH
Q psy6263         651 DLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYSHDLDEEVAHN  730 (913)
Q Consensus       651 dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s~D~d~~Vr~~  730 (913)
                      +  ..+-+++||+++|+|||++|.||+.|+|+|++||++|+|||++|||+||+|+|||+.+|+|+|+||+||+|.+|+.|
T Consensus       617 e--~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~n  694 (878)
T KOG2005|consen  617 E--SEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMN  694 (878)
T ss_pred             h--hhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHH
Confidence            1  23348899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhcCCCceecccccCCCCCCChHHHHHHHHHHHHhh
Q psy6263         731 AIFSMGLVGAGTNNARLATMLRQLAQYHVKNTGHLFMVRIAQGLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFL  810 (913)
Q Consensus       731 AiiALGlV~aGtnn~ri~~~Lr~L~~~~~~d~~~~f~~~iAqGLl~~Gkg~~tLsp~~sd~~~~~~~alagLl~~l~~~l  810 (913)
                      ||||||||||||||+|++++||||++||+||++++|.+||||||+|+|||++|++|||+||++++|+|+|||+++++.++
T Consensus       695 aIfamGLiGAGTnNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~L  774 (878)
T KOG2005|consen  695 AIFAMGLIGAGTNNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALL  774 (878)
T ss_pred             HHHHhccccCCcchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccchhHHHhhhhhcccceeeeecCCCcceeeEEeeccceeccccCCCCceeeceeeeecceecccCccceecC
Q psy6263         811 DTKNIILGKSHYLLYCLVPAMYPRWLVTLDENQEPVSVSVRVGQAVDVIGKAGTPKTIAGVHTHTTPVLLAVGERAELAT  890 (913)
Q Consensus       811 ~~~~~i~~~~h~l~~~l~lA~~Pr~li~~d~~l~~~~v~vrvg~avd~vg~ag~pk~itg~qth~tPvll~~~eraela~  890 (913)
                      |++.+++.++||++|||++||+|||++|+|++++|++|+|||||||||||||||||||||||||||||||+|||||||||
T Consensus       775 D~~i~l~~~~H~~ly~Lv~amqprm~~T~~e~~~pl~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahgeRAElat  854 (878)
T KOG2005|consen  775 DANIILLVKSHYLLYFLVLAMQPRMLVTVDEELEPLPVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHGERAELAT  854 (878)
T ss_pred             ccchhccchHHHHHHHHHHhhCceEEEeecccCccccceeeccchhhhhhccCCCceecceeccCcceecccchhhhhcc
Confidence            99955555899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCcccceEEEeecCCCCC
Q psy6263         891 DDYVPLTPVMEGFVILRKKDKDD  913 (913)
Q Consensus       891 ~~~~~~~~~leg~vi~~~~~~~~  913 (913)
                      |||+|+||.||||||||||||++
T Consensus       855 d~y~p~t~~lEg~vILkkNp~y~  877 (878)
T KOG2005|consen  855 DEYLPLTSHLEGVVILKKNPDYI  877 (878)
T ss_pred             ccccccccccceEEEEecCCccc
Confidence            99999999999999999999984

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2062\|consensus	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2005\|consensus	Back alignment and domain information

>KOG2062\|consensus	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1858\|consensus	Back alignment and domain information

>KOG1858\|consensus	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) []	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>KOG0567\|consensus	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0567\|consensus	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1078\|consensus	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG2171\|consensus	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>KOG0915\|consensus	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1824\|consensus	Back alignment and domain information

>KOG0166\|consensus	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG2259\|consensus	Back alignment and domain information

>KOG2023\|consensus	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		913
4b4t_N		945	Near-Atomic Resolution Structural Model Of The Yeas		4e-06

>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 945

Back alignment and structure

Iteration: 1

Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 25/258 (9%) Query: 354 ASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDK 413 A + N F++AG + + + W+ K + +A ASLG+I+ ++ G + Sbjct: 331 AVSVANGFMHAGTTDNSFIKAN--LPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAP 388 Query: 414 YL---YTSEDYIKAGALLALGIVNCGV-RNECDPALALLSDYVLNDSIT--------LRI 461 YL S +IK G+L LG++ G R+ D L + ++ +S T L Sbjct: 389 YLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTD----YLKNIIVENSGTSGDEDVDVLLH 444 Query: 462 XXXXXXXXXXXXTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAIL 521 + EV L VL + +T AA+ L +GTG E + Sbjct: 445 GASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEA--AALGMGLCMLGTGKPEAIHDMF 502 Query: 522 QTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMC 581 E Q G+ +R L + LA+ G+++ D + + + Sbjct: 503 TY-----SQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIAL 557 Query: 582 AYAGSGDVLVVQEFLHVC 599 AYAG+G+ V+ LHV Sbjct: 558 AYAGTGNNSAVKRLLHVA 575

PyMOL of 4b4t

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		913
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-176
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	1e-04

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963	Back alignment and structure

 Score =  534 bits (1377), Expect = e-176
 Identities = 150/854 (17%), Positives = 301/854 (35%), Gaps = 141/854 (16%)

Query: 40  LVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKP 99
           L+  ++ +   +   ALES+ +++    + +++              ++   +  T    
Sbjct: 20  LLALLRENQDSVKTYALESINNVVDQLWSEISN----------ELPDIEALYDDDTFSD- 68

Query: 100 KKLLCSIISVLAMSQDNVEQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATNKYEK 159
           +++   I S +  +    E   +KY L AK +   D   ++V  + ++  E +     ++
Sbjct: 69  REMAALIASKVYYNLGEYE-SAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQ 127

Query: 160 --------------PQLLELIEDIIQFDMKHNAEIQACDLLMEIDHLELLDK-------H 198
                         P+L  + E +I+  +K +    A  + +E   L++++         
Sbjct: 128 YTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQ 187

Query: 199 MDVTNYPRVCLYLSNCALYVEEPE--RSVITNGVLNNYLKFK--EYPRALTLALQLNDEP 254
              +   ++  YL   A+        RS I     +  +     +Y     + + LND  
Sbjct: 188 DSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAG 247

Query: 255 SVLKIFQLC---EDPVVRKQLAYMAGRQQITIELPDEMPDKNDLQIIMTNSHINDHFHSL 311
             L++F+      D  +  Q+A+                 +  L+I++T      +  +L
Sbjct: 248 LALQLFKKLKEENDEGLSAQIAFDLVSSA----------SQQLLEILVTELTAQGYDPAL 297

Query: 312 ARELDIMEPKTPEEVYKTWLEN-----IVLRPTYNLDVPVDSARHNLASTFVNAFVNAGF 366
              L+I+      + Y T+L N     I L       +    +  + A +  N F++AG 
Sbjct: 298 ---LNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGT 354

Query: 367 SRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIYLWDVDGGLTPIDKYL---YTSEDYIK 423
           + +  +  +    W+ K +     +A ASLG+I+  ++  G   +  YL     S  +IK
Sbjct: 355 TDNSFI--KANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIK 412

Query: 424 AGALLALGIVNCGVRNECDPALALL-----SDYVLNDSITLRIGAVLGLGLAYAGTKRQE 478
            G+L  LG++  G   +    L  +           D   L  GA LG+GLA  G+   E
Sbjct: 413 GGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE 472

Query: 479 VVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYS 538
           V   L  VL +   +      AA+   L  +GTG  E    +     E      Q G+ +
Sbjct: 473 VYEALKEVLYN--DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-----QHGNIT 525

Query: 539 RFLPLALAITYLGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHV 598
           R L + LA+   G+++  D  +  +    +             AYAG+G+   V+  LHV
Sbjct: 526 RGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585

Query: 599 CSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKEKEKDLSSMQAV 658
                                                                     AV
Sbjct: 586 AVSDSNDDVR----------------------------------------------RAAV 599

Query: 659 AALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNK 718
            ALG  ++            RI   L +     VR     A+ +        + IDVL+ 
Sbjct: 600 IALGFVLLRDYT-----TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654

Query: 719 YSHDLDEEVAHNAIFSMGLVGAGTN---NARLATMLRQLAQY---HVKNTGHLFMVRIAQ 772
            + D  + V   A+ ++ ++        N ++A + +          +     F   +AQ
Sbjct: 655 LTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQ 714

Query: 773 GLTHMGKGTVSLSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMY 832
           G+ + G   V++   + D   L+  ++ GL++    +             L + L  +  
Sbjct: 715 GIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFWY---------WFPLAHFLSLSFT 765

Query: 833 PRWLVTLDENQEPV 846
           P  ++ +  + + +
Sbjct: 766 PTTVIGIRGSDQAI 779

PyMOL of 4ady

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		913
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	100.0
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	98.55
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	98.48
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	98.27
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	98.21
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.21
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	98.21
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	98.19
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.16
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	98.02
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.9
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.86
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.85
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.8
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.75
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.67
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.63
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.55
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.54
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.48
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	97.48
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.47
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	97.38
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	97.32
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.32
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.27
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.17
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	97.13
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.07
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	97.06
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.85
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	96.75
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	96.66
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.59
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.58
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	96.5
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	96.46
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	96.45
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.4
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	96.37
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	96.37
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.34
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	96.22
1qgr_A		876	Protein (importin beta subunit); transport recepto	96.08
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	95.96
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	95.79
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	95.41
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	95.14
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	95.07
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	94.54
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.51
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	94.39
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.35
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	94.34
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	94.09
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	92.97
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	92.78
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	92.52
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	92.48
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	92.38
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	91.97
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	91.28
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	91.14
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	91.08
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	91.02
2gw1_A		514	Mitochondrial precursor proteins import receptor;	90.79
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	90.34
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	89.97
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	89.8
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	89.61
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	89.55
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	88.89
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	88.4
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	88.17
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	87.78
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	87.71
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	87.67
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	87.57
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	86.89
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	86.74
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	85.87
1w3b_A		388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	84.26
3nmz_A		458	APC variant protein; protein-protein complex, arma	84.23
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	84.06
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	83.98
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	83.55
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	83.1
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	82.61
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	81.47
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	81.45
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	81.18
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	80.14

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

Probab=100.00  E-value=6.3e-150  Score=1362.62  Aligned_cols=717  Identities=21%  Similarity=0.279  Sum_probs=646.1

Q ss_pred             HHHHHHhcCCChhccHHHHHHHHHHHHhhccccccCCCchhhhhhhHHHHHHHHhhcCCChhHHHHHHHHHHheeccCcC
Q psy6263          38 NMLVEKIKGSDKHLYLPALESMRDLIRTSTTSMTSVPMPLKFLRNHYGALKEACEKMTDQKPKKLLCSIISVLAMSQDNV  117 (913)
Q Consensus        38 ~~lv~~L~e~d~~l~~~AL~~L~~~i~~~t~s~tsvpkplk~l~~~~~~l~~~ye~~~~~~~r~l~a~i~S~l~~~~~~~  117 (913)
                      .+++++|+|+|++|+.+||++|+++|+++|+          +|++++++||++||+.+|+ .|++||+|+||||||++ +
T Consensus        18 ~~~l~lL~e~~~~lk~~aL~~l~~~vd~~w~----------eia~~i~~ie~l~ed~~f~-~r~laalvaSkvyy~Lg-~   85 (963)
T 4ady_A           18 APLLALLRENQDSVKTYALESINNVVDQLWS----------EISNELPDIEALYDDDTFS-DREMAALIASKVYYNLG-E   85 (963)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH----------HHHTTHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHT-C
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhhhHH----------HHHhhHHHHHHHHcCCCcc-hHHHHHHHHHHHheecc-c
Confidence            4689999999999999999999999999995          9999999999999999998 79999999999999999 9


Q ss_pred             chhhhhhhhhcCCCCCCCCcChHHHHHHHHHHHHHHhc--------c------CChhHHHHHHHHHHHHHhccCCHHHHH
Q psy6263         118 EQECLKYCLMAKQKDVGDWGHEYVRQLEAEIAEEWATN--------K------YEKPQLLELIEDIIQFDMKHNAEIQAC  183 (913)
Q Consensus       118 ~~~~L~y~L~~~~~~~~~wg~eYvr~l~~~i~~~y~~~--------~------~~~~~L~~lv~~iv~~~l~~n~e~eAi  183 (913)
                      |++||+|||.+|..|+.++|||||+||+++|||+|++.        +      ..+++|+.+|++||+||++||+|+|||
T Consensus        86 ~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~Av  165 (963)
T 4ady_A           86 YESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLKASELKLAL  165 (963)
T ss_dssp             HHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999876        1      468999999999999999999999999


Q ss_pred             HHHHhhCchhhHHHHHhc-------cChHHHHHHHHhhcccCCChh--hHHHHHHHHHHHhccC--CHHHHHHHHHhcCC
Q psy6263         184 DLLMEIDHLELLDKHMDV-------TNYPRVCLYLSNCALYVEEPE--RSVITNGVLNNYLKFK--EYPRALTLALQLND  252 (913)
Q Consensus       184 dlalE~~~ld~i~~~v~~-------~~~~ri~~Yl~~~~~~~~~~~--~~~vl~~~~~iy~~~~--~~~~al~~al~L~d  252 (913)
                      |||||++|+|+|+++|++       +|+.|+|+|+++|++++++|+  |.+||++++++|.+++  +|+++|+|+++|||
T Consensus       166 dLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~LnD  245 (963)
T 4ady_A          166 GIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLND  245 (963)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHcCC
Confidence            999999999999999998       899999999999999887764  6899999999999987  99999999999999


Q ss_pred             chhHHHHHhc---cCChhHHHHHHHHHhh--cccccc-CCCCCCCchhHHHhhcCccchhhhhhhhhhhcccCCCChHHH
Q psy6263         253 EPSVLKIFQL---CEDPVVRKQLAYMAGR--QQITIE-LPDEMPDKNDLQIIMTNSHINDHFHSLARELDIMEPKTPEEV  326 (913)
Q Consensus       253 ~~~v~~i~~~---~~d~~~~~Qiaf~lar--~~~~~~-~~~~~~~~~~l~~il~N~~l~~~f~~l~k~ldil~~k~~~di  326 (913)
                      ++.|+++|++   |+|.+++|||||||+|  +|.|+. +.          +.+.+.   .   ...+.++||+++.++++
T Consensus       246 ~~li~~if~~l~~~~d~l~ayQiAFdL~~~~~Q~fL~~v~----------~~l~~~---e---~~~kL~~ILsg~~~~~L  309 (963)
T 4ady_A          246 AGLALQLFKKLKEENDEGLSAQIAFDLVSSASQQLLEILV----------TELTAQ---G---YDPALLNILSGLPTCDY  309 (963)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCHHHHHHHH----------HHHHHT---T---CCHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhcccchHHHHHHH----------Hhcccc---c---hhHHHHHHhCCCChHHH
Confidence            9999999999   7899999999999998  566653 21          111110   0   12455556666666666


Q ss_pred             HHHHhhhhcCCCCCC----CCCccch--hhhhHHHHHHHHHHhcccCcccccccccCCcccccccchhhHHHHHHhhhhh
Q psy6263         327 YKTWLENIVLRPTYN----LDVPVDS--ARHNLASTFVNAFVNAGFSRDKLVSVEDGNKWMYKNKQHGMLSAAASLGLIY  400 (913)
Q Consensus       327 yk~~L~~~~~~~~~~----~~~~~ds--ar~~lA~~~~naf~naG~~~D~~l~~~~~~~wl~k~~~~~k~sA~aslGlI~  400 (913)
                      |++||.+++ +.++.    +|+.+|+  +++|+|++|||||||+||++|+||+  ++.+|++|+++|+||+|+||+|+||
T Consensus       310 yl~FL~~~n-~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~--~~~~Wl~k~~~~~k~sA~aSLGlIh  386 (963)
T 4ady_A          310 YNTFLLNNK-NIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIK--ANLPWLGKAQNWAKFTATASLGVIH  386 (963)
T ss_dssp             HHHHHHHHC-CCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHH--HCHHHHHHCCTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcc-ccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhh--cchhhhhccchHHHHHHHHHhhhhc
Confidence            666664320 22211    1333444  5899999999999999999999999  7788999999999999999999999


Q ss_pred             cccCCCcccccccccc---CchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCC--------HHHHHHHHHHHHH
Q psy6263         401 LWDVDGGLTPIDKYLY---TSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDS--------ITLRIGAVLGLGL  469 (913)
Q Consensus       401 ~~~~~~~l~~l~~yL~---s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~--------~~v~~gA~LGLGl  469 (913)
                      .||.++|+++|++|||   ++++++++||++|+|++++|+++   +++++|.++|.+++        +.+++||+||||+
T Consensus       387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            9999999999999999   77899999999999999999986   48999999998765        7899999999999


Q ss_pred             HhccCCCHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHh
Q psy6263         470 AYAGTKRQEVVTLLLPVLTDRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITY  549 (913)
Q Consensus       470 ay~Gs~~e~v~e~L~~~L~d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~  549 (913)
                      +|+||+++++++.|++++.+++.  .+..+|++||||+|+||||.++++.|+++++++     ++|+++|++++|||+++
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-----~~e~vrR~aalgLGll~  536 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-----QHGNITRGLAVGLALIN  536 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHHhhh
Confidence            99999999999999999987552  234499999999999999999999999999973     35699999999999999


Q ss_pred             cCCcccHHHHHHHHhcCCChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCC
Q psy6263         550 LGKKDAIDTTLAALEVLPDPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGST  629 (913)
Q Consensus       550 ~G~~e~~~~ll~~L~~~~~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (913)
                      +|++++++.+++.|..+++|+.||++++++||||+||||+.+||+|||.|.++.                          
T Consensus       537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--------------------------  590 (963)
T 4ady_A          537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--------------------------  590 (963)
T ss_dssp             TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--------------------------
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--------------------------
Confidence            999999999999999999999999999999999999999999999999998764                          


Q ss_pred             CCCchhhhchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCc
Q psy6263         630 ESTPAAAANDKKEKKDKEKEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPA  709 (913)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~  709 (913)
                                         ++++ |+.|  ++|+++|.+|+   ++|++|++++|++|+||+||+++|+|||++++|||+
T Consensus       591 -------------------~d~V-RraA--ViaLGlI~~g~---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~  645 (963)
T 4ady_A          591 -------------------NDDV-RRAA--VIALGFVLLRD---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL  645 (963)
T ss_dssp             -------------------CHHH-HHHH--HHHHHHHTSSS---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC
T ss_pred             -------------------cHHH-HHHH--HHHHHhhccCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc
Confidence                               2456 7655  45555666676   589999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhccCccHHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHHh---cCChhHHHHHHHHHHHhhcCCCcee
Q psy6263         710 LNVIDVLNKYSHDLDEEVAHNAIFSMGLVGAGTNNA---RLATMLRQLAQYH---VKNTGHLFMVRIAQGLTHMGKGTVS  783 (913)
Q Consensus       710 ~~vid~L~~~s~D~d~~Vr~~AiiALGlV~aGtnn~---ri~~~Lr~L~~~~---~~d~~~~f~~~iAqGLl~~Gkg~~t  783 (913)
                      .+++++|++++||+|++||++|++|||+||+||||+   |++++||||++||   |+|++++||++|||||+||||||+|
T Consensus       646 ~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~t  725 (963)
T 4ady_A          646 QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVT  725 (963)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEE
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceE
Confidence            999999999999999999999999999999999987   9999999999998   4689999999999999999999999


Q ss_pred             cccccCCCCCCChHHHHHHHHHHHHhhcccccccccchhHHHhhhhhcccceeeeecC-CCcceeeEEeeccc
Q psy6263         784 LSPFHTDRQILNPVALAGLLVVLTSFLDTKNIILGKSHYLLYCLVPAMYPRWLVTLDE-NQEPVSVSVRVGQA  855 (913)
Q Consensus       784 Lsp~~sd~~~~~~~alagLl~~l~~~l~~~~~i~~~~h~l~~~l~lA~~Pr~li~~d~-~l~~~~v~vrvg~a  855 (913)
                      |+|+||||+++|++|++||++|+++|         +||||+|||++||+|||+||+|+ |||+++..++....
T Consensus       726 is~~~s~~~~~~~~a~~Gl~~f~q~w---------yw~pl~~~lsla~~Pt~li~l~e~dL~~p~~~~~~~~~  789 (963)
T 4ady_A          726 IQLENADTGTLDTKSVVGLVMFSQFW---------YWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAK  789 (963)
T ss_dssp             ECSBCTTTCCBCHHHHHHHHHHTTTT---------TCGGGGGGGGGGEEECBEEEEETTTTBEECCEEEECSC
T ss_pred             EEeeeccCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCcEEEEecccccCCCceEEeeCCC
Confidence            99999999999999999999999999         59999999999999999999999 99999888887543

PyMOL of 4ady

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		913
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.11
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.1
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	98.04
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.91
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.16
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.03
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.84
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.75
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.53
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.17
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.11
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.94
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	94.56
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	94.29
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.28
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	93.23
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	93.09
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	92.66
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	92.17
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	92.08
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.55
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	85.94
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	84.0
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	83.77
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	83.56
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	80.37

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=0.00011  Score=73.75  Aligned_cols=248  Identities=14%  Similarity=0.097  Sum_probs=129.8

Q ss_pred             cccccccCchhhHHHHHHHHHHHHhcCCCCCchhHHHHHHHhhcCCCHHHHHHHHHHHHHHhccCCCH-HHHHHHHHhhc
Q psy6263         410 PIDKYLYTSEDYIKAGALLALGIVNCGVRNECDPALALLSDYVLNDSITLRIGAVLGLGLAYAGTKRQ-EVVTLLLPVLT  488 (913)
Q Consensus       410 ~l~~yL~s~~~~~k~GAllaLGLi~aG~~~e~d~~l~lL~~~L~~~~~~v~~gA~LGLGlay~Gs~~e-~v~e~L~~~L~  488 (913)
                      .|.+.|.++++.++..|+.+||...    .  +.++..|...+.++++.++..|+.+||-.......+ .+...|...+.
T Consensus        23 ~L~~~L~d~~~~vR~~A~~~L~~~~----~--~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~l~~~~l   96 (276)
T d1oyza_          23 ELFRLLDDHNSLKRISSARVLQLRG----G--QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL   96 (276)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHC----C--HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhC----C--HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccchHHHHHHHHh
Confidence            4556777788888888888888763    1  356777788888888888888888887654333333 34444444443


Q ss_pred             -CCCCcHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcCcccccchhhHHHHHHHHHhcCCcccHHHHHHHHhcCC
Q psy6263         489 -DRKSTPEVVAFAAVAASLIYVGTGYHEVASAILQTLIELPVSELQDGHYSRFLPLALAITYLGKKDAIDTTLAALEVLP  567 (913)
Q Consensus       489 -d~~~~~ev~~~A~laLGLi~lGs~n~~v~~~lL~~l~~~~~~~~~~e~i~r~~~lgLgLl~~G~~e~~~~ll~~L~~~~  567 (913)
                       |++  .++...|..+||-+.-+.  ......+++.+..... +. +..+.+.++  .++...|.......++..+ ...
T Consensus        97 ~d~~--~~vr~~a~~aL~~~~~~~--~~~~~~~~~~l~~~~~-d~-~~~vr~~a~--~~l~~~~~~~~~~~l~~l~-~~~  167 (276)
T d1oyza_          97 NDKS--ACVRATAIESTAQRCKKN--PIYSPKIVEQSQITAF-DK-STNVRRATA--FAISVINDKATIPLLINLL-KDP  167 (276)
T ss_dssp             HCSC--HHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHTT-CS-CHHHHHHHH--HHHHTC---CCHHHHHHHH-TCS
T ss_pred             cCCC--hhHHHHHHHHHHHHcccc--chhhHHHHHHHHHHhc-Cc-chHHHHHHH--HHHhhcchHHHHHHHHHhc-ccc
Confidence             332  345567777877554332  2223334444433100 01 112333332  2344455555555555444 344


Q ss_pred             ChhhhhHHHHHHHHHHhccCCHHHHHHHHhhhhccCCCCCcccccccccccccccccCCCCCCCCchhhhchhhhhhhhh
Q psy6263         568 DPFRSMAKMMLKMCAYAGSGDVLVVQEFLHVCSEHYTPTTSSAKEETSATGTAASATAGGSTESTPAAAANDKKEKKDKE  647 (913)
Q Consensus       568 ~pi~r~~~~~~lglAyaGTGn~~~Iq~LLh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (913)
                      ++..+.....++  ...+.++...+..++....+.                                             
T Consensus       168 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  200 (276)
T d1oyza_         168 NGDVRNWAAFAI--NINKYDNSDIRDCFVEMLQDK---------------------------------------------  200 (276)
T ss_dssp             SHHHHHHHHHHH--HHHTCCCHHHHHHHHHHTTCS---------------------------------------------
T ss_pred             cchhhhhHHHHH--Hhhhccccccchhhhhhhhhh---------------------------------------------
Confidence            555555444333  334555555555554433211                                             


Q ss_pred             hhhhhhhHHHHHHHHHHHhhcCcccccccHHHHHHHHhccCChhHHhHhHHHHHHhhcCCCchhHHHHHHhhc-cCccHH
Q psy6263         648 KEKDLSSMQAVAALGVAVVALGEEIGSEMSTRIFGQLGRYGEPTVRRAVPLAIALCSMSNPALNVIDVLNKYS-HDLDEE  726 (913)
Q Consensus       648 ~~~dv~~~~a~~~Lgiali~~ge~ig~em~~r~~~~Ll~~~~~~vR~~a~LALgL~~as~~~~~vid~L~~~s-~D~d~~  726 (913)
                       +..+ +..+..++|.    .|    .+.+...+-..++  ++.||..++-+||-+  |+  ..++..|.++. .+.|.+
T Consensus       201 -~~~~-~~~~~~al~~----~~----~~~~~~~L~~~l~--d~~vr~~a~~aL~~i--g~--~~~~~~L~~~l~~~~d~~  264 (276)
T d1oyza_         201 -NEEV-RIEAIIGLSY----RK----DKRVLSVLCDELK--KNTVYDDIIEAAGEL--GD--KTLLPVLDTMLYKFDDNE  264 (276)
T ss_dssp             -CHHH-HHHHHHHHHH----TT----CGGGHHHHHHHHT--SSSCCHHHHHHHHHH--CC--GGGHHHHHHHHTTSSCCH
T ss_pred             -hhhh-hhhhccccch----hh----hhhhHHHHHHHhC--ChHHHHHHHHHHHHc--CC--HHHHHHHHHHHccCCCHH
Confidence             1222 3333334332    22    3333444444444  456888888888765  33  34555555533 345677


Q ss_pred             HHHHHHHHH
Q psy6263         727 VAHNAIFSM  735 (913)
Q Consensus       727 Vr~~AiiAL  735 (913)
                      ||+.|+=+|
T Consensus       265 vr~~A~~~L  273 (276)
T d1oyza_         265 IITSAIDKL  273 (276)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887776554

PyMOL of d1oyza_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure