Psyllid ID: psy627

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFSWNKRTRTSTK
Secondary Structure (PSIPRED)
ccccccccccEEEEEccccccccccccccccccccccEEEEEccHHHHHHHHHHccccEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccccccccccccccccccccEEEEccHHHHHHHHHHccccEEEEcccccccccccHHHccccccccccccc
Coil and Loop (DISEMBL)
mqsgthnannwfiqfdtrerwenplmgwcstgdplsnlalnfssKEDAIQYCQKNGwkffveepkwktpkvksyafnfswnkrtrtstk
Flexible Loop (DISEMBL)
mqsgthnannwfiQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFveepkwktpkvksyafnfswnkrtrtstk
Low Complexity Region (SEG)
MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFSWNKRTRTSTK
Disordered region (IsUnstruct)
********NNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFSWN********
Disordered Region (DISOPRED)
*******ANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWK**KVKSYAFNFSW**R******
Disordered Region (DISEMBL)
MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFSWN********
Disordered Region (DISPRO)
******NANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFSWN********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFSWNKRTRTSTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	N/A	1.0	0.508	0.685	5e-31
Q02375	175	NADH dehydrogenase [ubiqu	yes	N/A	1.0	0.508	0.674	6e-31
O43181	175	NADH dehydrogenase [ubiqu	yes	N/A	1.0	0.508	0.651	2e-30
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	N/A	1.0	0.508	0.651	2e-30
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	N/A	1.0	0.508	0.651	4e-30
P0CB95	175	NADH dehydrogenase [ubiqu	yes	N/A	1.0	0.508	0.651	4e-30
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	N/A	1.0	0.508	0.640	1e-29
Q5XIF3	175	NADH dehydrogenase [ubiqu	yes	N/A	1.0	0.508	0.640	4e-29
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	N/A	1.0	0.508	0.674	1e-27
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	N/A	0.887	0.512	0.463	3e-14

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 68/89 (76%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSNL L FS+KEDA+ + +KNGW F 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLVLTFSTKEDAVAFAEKNGWSFD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           VEE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Gecko japonicus (taxid: 146911)

>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1

 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 68/89 (76%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSNL L FS+KEDA+ + +KNGW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNLVLTFSTKEDAVAFAEKNGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           VEE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 68/89 (76%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +KNGW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           +EE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 68/89 (76%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +KNGW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           +EE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 67/89 (75%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L F +KEDA+ + +KNGW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFRTKEDAVSFAEKNGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           VEE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 67/89 (75%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L F +KEDA+ + +KNGW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFRTKEDAVSFAEKNGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           VEE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 67/89 (75%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L  S+KEDA+ + +KNGW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTXSTKEDAVSFAEKNGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           +EE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 67/89 (75%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +K+GW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSAKEDAVAFAEKHGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           VE  K   PK KSY  NFSWNKRTR STK
Sbjct: 147 VEGRKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 68/89 (76%)

Query: 1   MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
           MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDAI + +KNGW + 
Sbjct: 87  MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSAKEDAIAFAEKNGWSYD 146

Query: 61  VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
           VEE K   PK KSY  NFSWNKRTR STK
Sbjct: 147 VEEKKVPKPKSKSYGANFSWNKRTRVSTK 175

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 3/82 (3%)

Query: 2   QSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNL---ALNFSSKEDAIQYCQKNGWK 58
           QSG+     W I F +  +WENPLMGW STGDP +N+   AL F S+E A  + +++GW 
Sbjct: 65  QSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWD 124

Query: 59  FFVEEPKWKTPKVKSYAFNFSW 80
           + V++P     KVKSY+ NF W
Sbjct: 125 YKVKKPNTPLLKVKSYSDNFKW 146

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Arabidopsis thaliana (taxid: 3702)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
UNIPROTKB|F1SLQ3	134	F1SLQ3 "Uncharacterized protei	1.0	0.664	0.685	6.9e-31
UNIPROTKB|Q66XS7	175	NDUFS4 "NADH dehydrogenase [ub	1.0	0.508	0.685	6.9e-31
UNIPROTKB|Q02375	175	NDUFS4 "NADH dehydrogenase [ub	1.0	0.508	0.674	1.1e-30
MGI|MGI:1343135	175	Ndufs4 "NADH dehydrogenase (ub	1.0	0.508	0.674	1.1e-30
UNIPROTKB|O43181	175	NDUFS4 "NADH dehydrogenase [ub	1.0	0.508	0.651	1.8e-30
UNIPROTKB|Q0MQH0	175	NDUFS4 "NADH dehydrogenase [ub	1.0	0.508	0.651	1.8e-30
UNIPROTKB|P0CB95	175	NDUFS4 "NADH dehydrogenase [ub	1.0	0.508	0.651	4.9e-30
UNIPROTKB|P0CB96	175	NDUFS4 "NADH dehydrogenase [ub	1.0	0.508	0.651	4.9e-30
UNIPROTKB|J9PB72	175	NDUFS4 "Uncharacterized protei	1.0	0.508	0.651	6.2e-30
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	1.0	0.767	0.651	7.9e-30

UNIPROTKB|F1SLQ3 F1SLQ3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 61/89 (68%), Positives = 68/89 (76%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSNL L FS+KEDA+ + +KNGW F 
Sbjct:    46 MQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLVLTFSTKEDAVAFAEKNGWSFD 105

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             VEE K   PK KSY  NFSWNKRTR STK
Sbjct:   106 VEERKVPKPKSKSYGANFSWNKRTRVSTK 134

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0051591 "response to cAMP" evidence=IEA

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA

GO:0045333 "cellular respiration" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|Q66XS7 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gekko japonicus (taxid:146911)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 61/89 (68%), Positives = 68/89 (76%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSNL L FS+KEDA+ + +KNGW F 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLVLTFSTKEDAVAFAEKNGWSFD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             VEE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|Q02375 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 60/89 (67%), Positives = 68/89 (76%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSNL L FS+KEDA+ + +KNGW + 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNLVLTFSTKEDAVAFAEKNGWSYD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             VEE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0051591 "response to cAMP" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

MGI|MGI:1343135 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 60/89 (67%), Positives = 68/89 (76%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDAI + +KNGW + 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSAKEDAIAFAEKNGWSYD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             VEE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 VEEKKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0001932 "regulation of protein phosphorylation" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

GO:0045271 "respiratory chain complex I" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISO

GO:0051591 "response to cAMP" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0070469 "respiratory chain" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|O43181 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/89 (65%), Positives = 68/89 (76%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +KNGW + 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             +EE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0051591 "response to cAMP" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP

GO:0045333 "cellular respiration" evidence=IMP

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q0MQH0 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/89 (65%), Positives = 68/89 (76%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA+ + +KNGW + 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             +EE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P0CB95 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 58/89 (65%), Positives = 67/89 (75%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L F +KEDA+ + +KNGW + 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFRTKEDAVSFAEKNGWSYD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             VEE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P0CB96 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo pygmaeus (taxid:9600)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 58/89 (65%), Positives = 67/89 (75%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L F +KEDA+ + +KNGW + 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFRTKEDAVSFAEKNGWSYD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             VEE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 VEERKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|J9PB72 NDUFS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 58/89 (65%), Positives = 67/89 (75%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQSG +N   W ++FDTRERWENPLMGW ST DPLSN+ L FS+KEDA  + +KNGW + 
Sbjct:    87 MQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAAAFAEKNGWSYD 146

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             +EE K   PK KSY  NFSWNKRTR STK
Sbjct:   147 IEERKVPKPKSKSYGANFSWNKRTRVSTK 175

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 58/89 (65%), Positives = 67/89 (75%)

Query:     1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFF 60
             MQ+G +N   W ++FD RERWENPLMGW ST DPLSN+ L FS+KEDAI + +KNGW + 
Sbjct:    28 MQAGVNNTKKWKMEFDNRERWENPLMGWASTADPLSNMVLTFSTKEDAIAFAEKNGWNYD 87

Query:    61 VEEPKWKTPKVKSYAFNFSWNKRTRTSTK 89
             VEE K   PK KSY  NFSWNKRTR STK
Sbjct:    88 VEEKKIPKPKSKSYGANFSWNKRTRVSTK 116

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02375	NDUS4_BOVIN	No assigned EC number	0.6741	1.0	0.5085	yes	N/A
Q0MQH1	NDUS4_PANTR	No assigned EC number	0.6404	1.0	0.5085	yes	N/A
O43181	NDUS4_HUMAN	No assigned EC number	0.6516	1.0	0.5085	yes	N/A
Q9CXZ1	NDUS4_MOUSE	No assigned EC number	0.6741	1.0	0.5085	yes	N/A
P0CB95	NDUS4_PONAB	No assigned EC number	0.6516	1.0	0.5085	yes	N/A
Q5XIF3	NDUS4_RAT	No assigned EC number	0.6404	1.0	0.5085	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	89
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	6e-34

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score =  111 bits (280), Expect = 6e-34
 Identities = 47/86 (54%), Positives = 59/86 (68%), Gaps = 1/86 (1%)

Query: 1  MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSN-LALNFSSKEDAIQYCQKNGWKF 59
          MQSG      W ++FD   RWENPLMGW STGDPLSN + L F +KE AI + ++ GW++
Sbjct: 13 MQSGRARTKKWTLEFDRSARWENPLMGWTSTGDPLSNQMELTFPTKEAAIAFAERQGWEY 72

Query: 60 FVEEPKWKTPKVKSYAFNFSWNKRTR 85
           VEEP     K K+Y+ NFSWN+RTR
Sbjct: 73 DVEEPNAPKAKPKAYSDNFSWNRRTR 98

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	100.0
KOG3389|consensus	178		100.0
PF09954	62	DUF2188: Uncharacterized protein conserved in bact	91.47
PRK05370	447	argininosuccinate synthase; Validated	87.04
PHA02552	151	4 head completion protein; Provisional	85.91
PF07045	65	DUF1330: Protein of unknown function (DUF1330); In	81.69
PF08727	57	P3A: Poliovirus 3A protein like; InterPro: IPR0148	80.99

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=100.00  E-value=1e-49  Score=268.43  Aligned_cols=86  Identities=63%  Similarity=1.152  Sum_probs=54.1

Q ss_pred             CCcccCCCCceEEEecCCCCccCCCCCCCCCCCCCCc-eeeecCCHHHHHHHHHHcCccEEEeccCCCCCCcccccccCC
Q psy627            1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSN-LALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFS   79 (89)
Q Consensus         1 mQSG~~~t~~W~lefe~~~~~~dPLMGWtss~D~~~q-v~l~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYadNF~   79 (89)
                      ||||++++++|+||||..++|+|||||||||+||++| |+|.|+|+|+||+|||+|||+|+|++|+.+++++|||||||+
T Consensus        13 mQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v~l~F~skE~Ai~yaer~G~~Y~V~~p~~r~~~~ksY~dNF~   92 (101)
T PF04800_consen   13 MQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSVRLKFDSKEDAIAYAERNGWDYEVEEPKKRKRRPKSYADNFS   92 (101)
T ss_dssp             STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-CEEEESSHHHHHHHHHHCT-EEEEE-STT-------------
T ss_pred             CCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCeeEeeeCCHHHHHHHHHHcCCeEEEeCCCCCcCCcccHHHhCC
Confidence            8999999999999999889999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             cCCCcce
Q psy627           80 WNKRTRT   86 (89)
Q Consensus        80 ~~r~~~~   86 (89)
                      |+|+++.
T Consensus        93 ~~r~~~~   99 (101)
T PF04800_consen   93 WNRRTRW   99 (101)
T ss_dssp             -------
T ss_pred             cCCCCCC
Confidence            9999874

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

>KOG3389|consensus

Probab=100.00  E-value=1.2e-43  Score=254.48  Aligned_cols=89  Identities=62%  Similarity=1.052  Sum_probs=87.4

Q ss_pred             CCcccCCCCceEEEecCCCCccCCCCCCCCCCCCCCc--eeeecCCHHHHHHHHHHcCccEEEeccCCCCCCcccccccC
Q psy627            1 MQSGTHNANNWFIQFDTRERWENPLMGWCSTGDPLSN--LALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNF   78 (89)
Q Consensus         1 mQSG~~~t~~W~lefe~~~~~~dPLMGWtss~D~~~q--v~l~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYadNF   78 (89)
                      ||||.++++.|.|||+.+.+|+||||||+|++||+++  +.|.|+|+||||+|||+|||+|.|++|+.+++++|||||||
T Consensus        88 tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDPlsNvgm~L~F~tkEdA~sFaEkngW~ydveep~~pk~K~KsYg~NF  167 (178)
T KOG3389|consen   88 TQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADPLSNVGMALAFDTKEDAKSFAEKNGWDYDVEEPNTPKLKVKSYGDNF  167 (178)
T ss_pred             hhcccCCccceEEEecchhhccCccccccccCCcccccceeeeeccHHHHHHHHHHcCCcccccCCCCCccccccccccc
Confidence            7999999999999999999999999999999999999  58999999999999999999999999999999999999999


Q ss_pred             CcCCCcceecC
Q psy627           79 SWNKRTRTSTK   89 (89)
Q Consensus        79 ~~~r~~~~~~k   89 (89)
                      +|++++|..||
T Consensus       168 sWn~rtr~~tk  178 (178)
T KOG3389|consen  168 SWNGRTRPETK  178 (178)
T ss_pred             cccCCCCCCCC
Confidence            99999999987

>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function

Probab=91.47  E-value=0.14  Score=30.71  Aligned_cols=41  Identities=20%  Similarity=0.415  Sum_probs=26.8

Q ss_pred             CCCCCCCCCCceeeecCCHHHHHHHHHH----c-CccEEEeccCCC
Q psy627           27 GWCSTGDPLSNLALNFSSKEDAIQYCQK----N-GWKFFVEEPKWK   67 (89)
Q Consensus        27 GWtss~D~~~qv~l~F~s~e~Aiayae~----~-G~~Y~V~~p~~~   67 (89)
                      ||.--.+.-......|+|+++||++|+.    + +-+..|.....+
T Consensus        10 ~W~v~~eg~~ra~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~   55 (62)
T PF09954_consen   10 GWAVKKEGAKRASKTFDTKAEAIEAARELAKNQGGGELIIHGRDGK   55 (62)
T ss_pred             CceEEeCCCcccccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCe
Confidence            4554444445557899999999998764    3 566666554433

>PRK05370 argininosuccinate synthase; Validated

Probab=87.04  E-value=0.44  Score=39.59  Aligned_cols=22  Identities=5%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             eecCCHHHHHHHHHHcCccEEE
Q psy627           40 LNFSSKEDAIQYCQKNGWKFFV   61 (89)
Q Consensus        40 l~F~s~e~Aiayae~~G~~Y~V   61 (89)
                      -.|+|+++.|+||++|||+..+
T Consensus       164 ~~f~sR~e~i~Ya~~hGIpv~~  185 (447)
T PRK05370        164 DELGGRAEMSEFLIAHGFDYKM  185 (447)
T ss_pred             cccCCHHHHHHHHHHcCCCCCc
Confidence            3689999999999999999754

>PHA02552 4 head completion protein; Provisional

Probab=85.91  E-value=0.75  Score=33.06  Aligned_cols=21  Identities=33%  Similarity=0.673  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHcCccEEEeccC
Q psy627           45 KEDAIQYCQKNGWKFFVEEPK   65 (89)
Q Consensus        45 ~e~Aiayae~~G~~Y~V~~p~   65 (89)
                      -++|.+||+++||.|.|....
T Consensus       120 ~~Aa~~~a~~~Gw~F~iiTE~  140 (151)
T PHA02552        120 WKAARALCEKKGWKFKIITED  140 (151)
T ss_pred             HHHHHHHHHHcCCEEEEEEHH
Confidence            478999999999999997754

>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length

Probab=81.69  E-value=1.5  Score=26.38  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=16.2

Q ss_pred             CCCCCceeeecCCHHHHHHHH
Q psy627           32 GDPLSNLALNFSSKEDAIQYC   52 (89)
Q Consensus        32 ~D~~~qv~l~F~s~e~Aiaya   52 (89)
                      .++-.-|-|.|+|.++|+++-
T Consensus        36 ~~~~~~viieFPs~~aa~~~~   56 (65)
T PF07045_consen   36 WDPDRVVIIEFPSMEAAKAWY   56 (65)
T ss_dssp             -SSSEEEEEEESSHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHH
Confidence            444455899999999999873

The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.

>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses

Probab=80.99  E-value=1.1  Score=27.70  Aligned_cols=16  Identities=25%  Similarity=0.843  Sum_probs=10.7

Q ss_pred             HHHHHHHHHcCccEEE
Q psy627           46 EDAIQYCQKNGWKFFV   61 (89)
Q Consensus        46 e~Aiayae~~G~~Y~V   61 (89)
                      ++-+.||+++||-..+
T Consensus        30 ~eV~~YC~~~GWIip~   45 (57)
T PF08727_consen   30 PEVREYCEEQGWIIPA   45 (57)
T ss_dssp             HHHHHHHHHHT--TT-
T ss_pred             HHHHHHHHHCCccccC
Confidence            4589999999996443

It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	89
2jya_A	106	Nmr Solution Structure Of Protein Atu1810 From Agro		1e-11
2lju_A	108	Solution Structure Of Putative Oxidoreductase From		2e-05

>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr23, Ontario Centre For Structural Proteomics Target Atc1776 Length = 106

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 1  MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKF 59
          MQSGT   N W ++FD    R  +P+MG+ S+ D    + L F ++E A  Y Q+ G ++
Sbjct: 16 MQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEY 75
Query: 60 FVEEPKWKTPKVKSYAFNFSWNK 82
           V  PK  T KV SY  NF +N+
Sbjct: 76 RVILPKEATRKVVSYTDNFRFNR 98

>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From Ehrlichia Chaffeensis, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 1   MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKF 59
           MQSG      W ++F+    ++  PLM W  + D    + L+F+++E AI Y   +   +
Sbjct: 24  MQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVCLSFTTRELAIAYAVAHKIDY 83
Query: 60  FVEEPKWKTPKVKSYAFNFS 79
            V +   +T   KSYA NF+
Sbjct: 84  TVLQDNPRTIVPKSYADNFT 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	3e-35
2lju_A	108	Putative oxidoreductase; structural genomics, seat	3e-35

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score =  114 bits (288), Expect = 3e-35
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 1   MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKF 59
           MQSGT   N W ++FD    R  +P+MG+ S+ D    + L F ++E A  Y Q+ G ++
Sbjct: 16  MQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEY 75

Query: 60  FVEEPKWKTPKVKSYAFNFSWNKRT 84
            V  PK  T KV SY  NF +N+  
Sbjct: 76  RVILPKEATRKVVSYTDNFRFNRTQ 100

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score =  114 bits (288), Expect = 3e-35
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 1   MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKF 59
           MQSG      W ++F+    ++  PLM W  + D    + L+F+++E AI Y   +   +
Sbjct: 24  MQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVCLSFTTRELAIAYAVAHKIDY 83

Query: 60  FVEEPKWKTPKVKSYAFNFSWNKR 83
            V +   +T   KSYA NF+  + 
Sbjct: 84  TVLQDNPRTIVPKSYADNFTKPRD 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
2lju_A	108	Putative oxidoreductase; structural genomics, seat	100.0
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	88.72
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	86.67
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	83.93

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=100.00  E-value=1.5e-50  Score=274.41  Aligned_cols=84  Identities=30%  Similarity=0.524  Sum_probs=81.9

Q ss_pred             CCcccCCCCceEEEecCC-CCccCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHcCccEEEeccCCCCCCcccccccCC
Q psy627            1 MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFS   79 (89)
Q Consensus         1 mQSG~~~t~~W~lefe~~-~~~~dPLMGWtss~D~~~qv~l~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYadNF~   79 (89)
                      ||||++++++|+||||+. ++|+|||||||||+||++||+|+|+|+|+||+|||+|||+|+|++|+.+++++|+|||||+
T Consensus        24 mQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv~L~F~skE~AiayAek~G~~y~V~ep~~~~~r~ksYadNF~  103 (108)
T 2lju_A           24 MQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVCLSFTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNFT  103 (108)
T ss_dssp             SSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCSCEEESSHHHHHHHHHHTTCEEEEECSSCCCCCCCCCCCCCC
T ss_pred             cccCCCCCCceEEEEecCCCCccCCCccccCCCCccccceEecCCHHHHHHHHHHcCCEEEEecCCcccCCcCchHHHCC
Confidence            899999999999999997 6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCc
Q psy627           80 WNKRT   84 (89)
Q Consensus        80 ~~r~~   84 (89)
                      |+|++
T Consensus       104 ~~r~~  108 (108)
T 2lju_A          104 KPRDM  108 (108)
T ss_dssp             CCCCC
T ss_pred             ccCCC
Confidence            99974

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=100.00  E-value=9.9e-51  Score=274.56  Aligned_cols=84  Identities=39%  Similarity=0.643  Sum_probs=66.1

Q ss_pred             CCcccCCCCceEEEecCC-CCccCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHcCccEEEeccCCCCCCcccccccCC
Q psy627            1 MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFS   79 (89)
Q Consensus         1 mQSG~~~t~~W~lefe~~-~~~~dPLMGWtss~D~~~qv~l~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYadNF~   79 (89)
                      ||||++++++|+||||+. ++|+|||||||||+||++||+|.|+|+|+||+|||+|||+|+|++|+.+++++|+|||||+
T Consensus        16 mQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv~L~F~skE~AiayAek~G~~y~V~ep~~~~~r~ksYadNF~   95 (106)
T 2jya_A           16 MQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEYRVILPKEATRKVVSYTDNFR   95 (106)
T ss_dssp             CTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEEEEEESSHHHHHHHHHHHTCEEEECCCTTC------------
T ss_pred             cccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccceEecCCHHHHHHHHHHcCCEEEEeCCCcCcCCcCchHHhCC
Confidence            999999999999999996 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCc
Q psy627           80 WNKRT   84 (89)
Q Consensus        80 ~~r~~   84 (89)
                      |+|++
T Consensus        96 ~~r~~  100 (106)
T 2jya_A           96 FNRTQ  100 (106)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            99986

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=88.72  E-value=0.2  Score=36.01  Aligned_cols=21  Identities=14%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             eeecCCHHHHHHHHHHcCccE
Q psy627           39 ALNFSSKEDAIQYCQKNGWKF   59 (89)
Q Consensus        39 ~l~F~s~e~Aiayae~~G~~Y   59 (89)
                      .|.|+|.++++.||+++||..
T Consensus       199 ~L~f~s~~e~~~f~~~~gw~i  219 (229)
T 4b0z_A          199 LLYLENTKETEKLAEERGWDI  219 (229)
T ss_dssp             HTTCSSHHHHHHHHHHHTCEE
T ss_pred             HhCCCCHHHHHHHHHHcCCEE
Confidence            488999999999999999975

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=86.67  E-value=0.34  Score=36.85  Aligned_cols=22  Identities=18%  Similarity=0.557  Sum_probs=20.5

Q ss_pred             eeecCCHHHHHHHHHHcCccEE
Q psy627           39 ALNFSSKEDAIQYCQKNGWKFF   60 (89)
Q Consensus        39 ~l~F~s~e~Aiayae~~G~~Y~   60 (89)
                      .|.|+|.|+|++||+.+||.+.
T Consensus       233 ~L~Fds~ee~~~F~~~~gl~~~  254 (316)
T 3t5v_A          233 MLLFNNRQEIIEFCNYYSIEII  254 (316)
T ss_dssp             HTTCSSHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCHHHHHHHHHHCCCeEe
Confidence            4889999999999999999985

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.93  E-value=0.44  Score=35.30  Aligned_cols=21  Identities=14%  Similarity=0.533  Sum_probs=19.3

Q ss_pred             eeecCCHHHHHHHHHHcCccE
Q psy627           39 ALNFSSKEDAIQYCQKNGWKF   59 (89)
Q Consensus        39 ~l~F~s~e~Aiayae~~G~~Y   59 (89)
                      -|.|+|.+++++||+++||..
T Consensus       208 ~L~F~s~~e~~~F~~~~gW~~  228 (274)
T 4b4t_T          208 LLFFNNEKETEKFALERNWPI  228 (274)
T ss_dssp             HHTCCSHHHHHHHHHHTTCCC
T ss_pred             HhCCCCHHHHHHHHHHcCCEE
Confidence            488999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	93.04

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.014  Score=35.91  Aligned_cols=23  Identities=4%  Similarity=0.278  Sum_probs=20.0

Q ss_pred             eecCCHHHHHHHHHHcCccEEEe
Q psy627           40 LNFSSKEDAIQYCQKNGWKFFVE   62 (89)
Q Consensus        40 l~F~s~e~Aiayae~~G~~Y~V~   62 (89)
                      |.|.|++|=++||++|||+|...
T Consensus       163 ~~~~sk~ei~~ya~~~gi~~~~~  185 (188)
T d1k92a1         163 DELGGRHEMSEFMIACGFDYKMS  185 (188)
T ss_dssp             HHSSSHHHHHHHHHHTTCCCCCC
T ss_pred             cccCCHHHHHHHHHHcCCCCCCC
Confidence            45679999999999999999764