Psyllid ID: psy629

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKVPK
Secondary Structure (PSIPRED)
cccEEEcccccHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccHHHHHHHHHccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEcccccEEEccHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHccccccccccccHHHHHHHHHcccccEEEEEcccccc
Coil and Loop (DISEMBL)
mdsylyapkddykhraywRDLYSVEEAEHLTGLISAAKEQGIDFYyalspgldityssgKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFehlgqpkfmlcptqycstravpnvknseyLNTLGSKLAKeidimwtgpkvpk
Flexible Loop (DISEMBL)
mdsylyapkddykhraYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLgsklakeidimwtgpkvpk
Low Complexity Region (SEG)
MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKVPK
Disordered region (IsUnstruct)
****LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE****DKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWT******
Disordered Region (DISOPRED)
MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKVPK
Disordered Region (DISEMBL)
MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKVPK
Disordered Region (DISPRO)
MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKVP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKVPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q9EQQ9	916	Bifunctional protein NCOA	yes	N/A	0.987	0.179	0.660	2e-63
O60502	916	Bifunctional protein NCOA	no	N/A	0.987	0.179	0.660	2e-63
Q8VIJ5	916	Bifunctional protein NCOA	yes	N/A	0.987	0.179	0.654	8e-63
Q89ZI2	737	O-GlcNAcase BT_4395 OS=Ba	yes	N/A	0.909	0.204	0.376	5e-23
Q0TR53	1001	O-GlcNAcase NagJ OS=Clost	yes	N/A	0.951	0.157	0.323	9e-20
Q8XL08	1001	O-GlcNAcase NagJ OS=Clost	yes	N/A	0.951	0.157	0.323	1e-19
P26831	1628	Hyaluronoglucosaminidase	no	N/A	0.518	0.052	0.315	7e-07

>sp|Q9EQQ9|NCOAT_MOUSE Bifunctional protein NCOAT OS=Mus musculus GN=Mgea5 PE=1 SV=2

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 137/165 (83%), Gaps = 1/165 (0%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           +++YLYAPKDDYKHR +WR++YSVEEAE L  LISAA+E  I+F YA+SPGLDIT+S+ K
Sbjct: 90  LNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPK 149

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV+TLKRKL+QV+QFGCR FALLFDDI+  M  ADKEVF SFAHAQVS+TNE++++LG+P
Sbjct: 150 EVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEP 209

Query: 121 K-FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           + F+ CPT+YC T   PNV  S YL T+G KL   I+++WTGPKV
Sbjct: 210 ETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKV 254

Cleaves GlcNAc but not GalNAc from glycopeptides. Can use p-nitrophenyl-beta-GlcNAc as substrate but not p-nitrophenyl-beta-GalNAc or p-nitrophenyl-alpha-GlcNAc. Possesses hyaluronidase activity (By similarity). Acetylates 'Lys-8' of histone H4.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 8

>sp|O60502|NCOAT_HUMAN Bifunctional protein NCOAT OS=Homo sapiens GN=MGEA5 PE=1 SV=2

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 137/165 (83%), Gaps = 1/165 (0%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           +++YLYAPKDDYKHR +WR++YSVEEAE L  LISAA+E  I+F YA+SPGLDIT+S+ K
Sbjct: 90  LNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPK 149

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV+TLKRKL+QV+QFGCR FALLFDDI+  M  ADKEVF SFAHAQVS+TNE++++LG+P
Sbjct: 150 EVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEP 209

Query: 121 K-FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           + F+ CPT+YC T   PNV  S YL T+G KL   I+++WTGPKV
Sbjct: 210 ETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKV 254

Cleaves GlcNAc but not GalNAc from glycopeptides. Can use p-nitrophenyl-beta-GlcNAc as substrate but not p-nitrophenyl-beta-GalNAc or p-nitrophenyl-alpha-GlcNAc. Possesses hyaluronidase activity. Acetylates 'Lys-8' of histone H4 and 'Lys-14' of histone H3.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q8VIJ5|NCOAT_RAT Bifunctional protein NCOAT OS=Rattus norvegicus GN=Mgea5 PE=1 SV=1

 Score =  239 bits (609), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 137/165 (83%), Gaps = 1/165 (0%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           +++YLYAPKDDYKHR +WR++YSVEEAE L  LISAA+E  I+F YA+SPGLDIT+S+ K
Sbjct: 90  LNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPK 149

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV+TLKRKL+QV+QFGCR FALLFDDI+  M  ADKEVF SFAHAQVS+TNE++++LG+P
Sbjct: 150 EVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEP 209

Query: 121 K-FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           + F+ CPT+YC T   P+V  S YL T+G KL   I+++WTGPKV
Sbjct: 210 ETFLFCPTEYCGTFCYPSVSQSPYLRTVGEKLLPGIEVLWTGPKV 254

Possesses hyaluronidase activity (By similarity). Cleaves GlcNAc but not GalNAc from glycopeptides. Can use p-nitrophenyl-beta-GlcNAc as substrate but not p-nitrophenyl-beta-GalNAc or p-nitrophenyl-alpha-GlcNAc. Acetylates 'Lys-8' of histone H4 and 'Lys-14' of histone H3.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q89ZI2|OGA_BACTN O-GlcNAcase BT_4395 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=BT_4395 PE=1 SV=1

 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)

Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 179 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 237

Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K         Q  + N + E   Q
Sbjct: 238 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 288

Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 289 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 335

Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins.

Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 9

>sp|Q0TR53|OGA_CLOP1 O-GlcNAcase NagJ OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=nagJ PE=1 SV=1

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +   +
Sbjct: 210 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 269

Query: 59  GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
           G+E    L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 270 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 325

Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            +P  +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 326 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 370

Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins.

Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) (taxid: 195103)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 9

>sp|Q8XL08|OGA_CLOPE O-GlcNAcase NagJ OS=Clostridium perfringens (strain 13 / Type A) GN=nagJ PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 9/167 (5%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYS--S 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI A+ E  +DF + +SPG+DI +   +
Sbjct: 210 LNTYIYAPKDDPYHREKWREPYPENEMQRMQELIDASAENKVDFVFGISPGIDIRFDGEA 269

Query: 59  GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
           G+E    L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 270 GEEDFNHLIAKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 325

Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            +P  +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 326 -KP-LITVPTEYDTGAMVSNGQPRTYTRIFAETVDPSIEVMWTGPGV 370

Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins.

Clostridium perfringens (strain 13 / Type A) (taxid: 195102)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 9

>sp|P26831|NAGH_CLOPE Hyaluronoglucosaminidase OS=Clostridium perfringens (strain 13 / Type A) GN=nagH PE=1 SV=2

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGL------DI 54
           ++ Y++APKDD  H + WRDLY  E+   +  L     E    + YAL P +      D 
Sbjct: 215 LNQYVFAPKDDPYHNSKWRDLYPEEKLSEIKKLAQVGNETKNRYVYALHPFMNNPVRFDT 274

Query: 55  TYSSGKEVATLKRKLEQVAQFGCRGFALLFDD 86
             +   ++  +K K  Q+ +   R FA+L DD
Sbjct: 275 EENYQNDLGVIKAKFTQLLENDVRQFAILADD 306

Putative virulence factor which is likely to act on connective tissue during gas gangrene.

Clostridium perfringens (strain 13 / Type A) (taxid: 195102)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
350414142	910	PREDICTED: bifunctional protein NCOAT-li	0.987	0.180	0.865	7e-83
345493014	936	PREDICTED: bifunctional protein NCOAT-li	0.987	0.175	0.865	8e-83
345493016	954	PREDICTED: bifunctional protein NCOAT-li	0.987	0.171	0.865	9e-83
340717678	910	PREDICTED: bifunctional protein NCOAT-li	0.987	0.180	0.865	9e-83
340717680	928	PREDICTED: bifunctional protein NCOAT-li	0.987	0.176	0.865	1e-82
350414145	928	PREDICTED: bifunctional protein NCOAT-li	0.987	0.176	0.865	1e-82
307195935	909	Bifunctional protein NCOAT [Harpegnathos	0.987	0.180	0.865	1e-82
332029068	927	Bifunctional protein NCOAT [Acromyrmex e	0.987	0.176	0.859	2e-82
307184947	926	Bifunctional protein NCOAT [Camponotus f	0.987	0.177	0.859	3e-82
66513484	928	PREDICTED: bifunctional protein NCOAT-li	0.987	0.176	0.865	4e-82

>gi|350414142|ref|XP_003490218.1| PREDICTED: bifunctional protein NCOAT-like isoform 1 [Bombus impatiens]

 Score =  311 bits (796), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 156/164 (95%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAARECGITFYYALSPGLDITYSSAK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV+ LKRKLEQV+QFGC  FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVSVLKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493014|ref|XP_003426978.1| PREDICTED: bifunctional protein NCOAT-like isoform 2 [Nasonia vitripennis]

 Score =  311 bits (796), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 156/164 (95%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAARESGITFYYALSPGLDITYSSIK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV  LKRKLEQV+QFGC+ FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVTALKRKLEQVSQFGCQAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVSSSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493016|ref|XP_001603509.2| PREDICTED: bifunctional protein NCOAT-like isoform 1 [Nasonia vitripennis]

 Score =  310 bits (795), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 156/164 (95%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAARESGITFYYALSPGLDITYSSIK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV  LKRKLEQV+QFGC+ FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVTALKRKLEQVSQFGCQAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVSSSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717678|ref|XP_003397306.1| PREDICTED: bifunctional protein NCOAT-like isoform 1 [Bombus terrestris]

 Score =  310 bits (795), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 156/164 (95%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAARECGITFYYALSPGLDITYSSAK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV+ LKRKLEQV+QFGC  FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVSVLKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717680|ref|XP_003397307.1| PREDICTED: bifunctional protein NCOAT-like isoform 2 [Bombus terrestris]

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 156/164 (95%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAARECGITFYYALSPGLDITYSSAK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV+ LKRKLEQV+QFGC  FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVSVLKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414145|ref|XP_003490219.1| PREDICTED: bifunctional protein NCOAT-like isoform 2 [Bombus impatiens]

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 156/164 (95%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAARECGITFYYALSPGLDITYSSAK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV+ LKRKLEQV+QFGC  FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVSVLKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195935|gb|EFN77711.1| Bifunctional protein NCOAT [Harpegnathos saltator]

 Score =  310 bits (794), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 155/164 (94%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAAREYGITFYYALSPGLDITYSSSK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV  LKRKLEQV+QFGC  FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVTALKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029068|gb|EGI69082.1| Bifunctional protein NCOAT [Acromyrmex echinatior]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/164 (85%), Positives = 155/164 (94%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAAREYGITFYYALSPGLDITYSSSK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV  LKRKLEQV+QFGC  FALLFDDIE EMSEADKE+FQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVTALKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEIFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184947|gb|EFN71212.1| Bifunctional protein NCOAT [Camponotus floridanus]

 Score =  308 bits (790), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/164 (85%), Positives = 155/164 (94%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAAREYGITFYYALSPGLDITYSSSK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV  LKRKLEQV+QFGC  FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F+HLGQP
Sbjct: 107 EVTALKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFQHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLG+KLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGNKLAQEIDIMWTGPKV 210

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66513484|ref|XP_395374.2| PREDICTED: bifunctional protein NCOAT-like [Apis mellifera]

 Score =  308 bits (789), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 142/164 (86%), Positives = 154/164 (93%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           MDSYLYAPKDDYKHRAYWRDLY+VEEAEHLTGLI+AA+E GI FYYALSPGLDITYSS K
Sbjct: 47  MDSYLYAPKDDYKHRAYWRDLYTVEEAEHLTGLITAARECGITFYYALSPGLDITYSSVK 106

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           EV  LKRKLEQV+QFGC  FALLFDDIE EMSEADKEVFQSFAHAQVSVTN++F HLGQP
Sbjct: 107 EVTVLKRKLEQVSQFGCTAFALLFDDIEPEMSEADKEVFQSFAHAQVSVTNDIFHHLGQP 166

Query: 121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           +F+LCPTQYC+TRA+PNV +SEYLNTLGSKLA+EIDIMWTGPKV
Sbjct: 167 RFLLCPTQYCATRAMPNVASSEYLNTLGSKLAQEIDIMWTGPKV 210

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
FB|FBgn0038870	1019	Oga "O-GlcNAcase" [Drosophila	0.975	0.158	0.771	1.1e-67
UNIPROTKB|O60502	916	MGEA5 "Bifunctional protein NC	0.987	0.179	0.660	1.3e-58
MGI|MGI:1932139	916	Mgea5 "meningioma expressed an	0.987	0.179	0.660	1.3e-58
RGD|621077	916	Mgea5 "meningioma expressed an	0.987	0.179	0.654	4.6e-58
WB|WBGene00020596	872	oga-1 [Caenorhabditis elegans	0.987	0.188	0.548	1.3e-48

FB|FBgn0038870 Oga "O-GlcNAcase" [Drosophila melanogaster (taxid:7227)]

 Score = 691 (248.3 bits), Expect = 1.1e-67, P = 1.1e-67
 Identities = 125/162 (77%), Positives = 147/162 (90%)

Query:     3 SYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEV 62
             SY+YAPKDDYKHRAYWR+LY+VEEA+HL+ LI+AAKE GI FYYALSPGLD+TYSS KE+
Sbjct:    50 SYMYAPKDDYKHRAYWRELYTVEEADHLSSLIAAAKEAGITFYYALSPGLDMTYSSPKEI 109

Query:    63 ATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKF 122
             ATLKRKL+QVAQFGC  +ALLFDDIESE+S+ADKEVFQ+FA+A VSVTNE++ HLG P+F
Sbjct:   110 ATLKRKLDQVAQFGCEAYALLFDDIESELSKADKEVFQTFANAHVSVTNEIYTHLGSPRF 169

Query:   123 MLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
             + CPTQYC++RAVP V+ SEYLNTLGSKL  EIDI+WTG KV
Sbjct:   170 LFCPTQYCASRAVPTVQESEYLNTLGSKLNNEIDILWTGDKV 211

GO:0004415 "hyalurononglucosaminidase activity" evidence=ISS

UNIPROTKB|O60502 MGEA5 "Bifunctional protein NCOAT" [Homo sapiens (taxid:9606)]

 Score = 606 (218.4 bits), Expect = 1.3e-58, P = 1.3e-58
 Identities = 109/165 (66%), Positives = 137/165 (83%)

Query:     1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
             +++YLYAPKDDYKHR +WR++YSVEEAE L  LISAA+E  I+F YA+SPGLDIT+S+ K
Sbjct:    90 LNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPK 149

Query:    61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
             EV+TLKRKL+QV+QFGCR FALLFDDI+  M  ADKEVF SFAHAQVS+TNE++++LG+P
Sbjct:   150 EVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEP 209

Query:   121 K-FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
             + F+ CPT+YC T   PNV  S YL T+G KL   I+++WTGPKV
Sbjct:   210 ETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKV 254

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0006044 "N-acetylglucosamine metabolic process" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0010524 "positive regulation of calcium ion transport into cytosol" evidence=IEA

GO:0010616 "negative regulation of cardiac muscle adaptation" evidence=IEA

GO:0031343 "positive regulation of cell killing" evidence=IEA

GO:0032024 "positive regulation of insulin secretion" evidence=IEA

GO:0043243 "positive regulation of protein complex disassembly" evidence=IEA

GO:0045862 "positive regulation of proteolysis" evidence=IEA

GO:0046060 "dATP metabolic process" evidence=IEA

GO:0046326 "positive regulation of glucose import" evidence=IEA

GO:0048545 "response to steroid hormone stimulus" evidence=IEA

GO:0051054 "positive regulation of DNA metabolic process" evidence=IEA

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=IEA

GO:0060051 "negative regulation of protein glycosylation" evidence=IEA

GO:0060124 "positive regulation of growth hormone secretion" evidence=IEA

GO:0070265 "necrotic cell death" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004415 "hyalurononglucosaminidase activity" evidence=TAS

GO:0006516 "glycoprotein catabolic process" evidence=TAS

MGI|MGI:1932139 Mgea5 "meningioma expressed antigen 5 (hyaluronidase)" [Mus musculus (taxid:10090)]

 Score = 606 (218.4 bits), Expect = 1.3e-58, P = 1.3e-58
 Identities = 109/165 (66%), Positives = 137/165 (83%)

Query:     1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
             +++YLYAPKDDYKHR +WR++YSVEEAE L  LISAA+E  I+F YA+SPGLDIT+S+ K
Sbjct:    90 LNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPK 149

Query:    61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
             EV+TLKRKL+QV+QFGCR FALLFDDI+  M  ADKEVF SFAHAQVS+TNE++++LG+P
Sbjct:   150 EVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEP 209

Query:   121 K-FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
             + F+ CPT+YC T   PNV  S YL T+G KL   I+++WTGPKV
Sbjct:   210 ETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKV 254

GO:0003824 "catalytic activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006044 "N-acetylglucosamine metabolic process" evidence=ISO

GO:0006612 "protein targeting to membrane" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0010524 "positive regulation of calcium ion transport into cytosol" evidence=ISO

GO:0010616 "negative regulation of cardiac muscle adaptation" evidence=ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0031343 "positive regulation of cell killing" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=ISO

GO:0043243 "positive regulation of protein complex disassembly" evidence=ISO

GO:0045862 "positive regulation of proteolysis" evidence=ISO

GO:0046060 "dATP metabolic process" evidence=ISO

GO:0046326 "positive regulation of glucose import" evidence=ISO

GO:0051054 "positive regulation of DNA metabolic process" evidence=ISO

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0060051 "negative regulation of protein glycosylation" evidence=ISO

GO:0060124 "positive regulation of growth hormone secretion" evidence=ISO

GO:0070265 "necrotic cell death" evidence=ISO

RGD|621077 Mgea5 "meningioma expressed antigen 5 (hyaluronidase)" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 4.6e-58, P = 4.6e-58
 Identities = 108/165 (65%), Positives = 137/165 (83%)

Query:     1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
             +++YLYAPKDDYKHR +WR++YSVEEAE L  LISAA+E  I+F YA+SPGLDIT+S+ K
Sbjct:    90 LNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPK 149

Query:    61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
             EV+TLKRKL+QV+QFGCR FALLFDDI+  M  ADKEVF SFAHAQVS+TNE++++LG+P
Sbjct:   150 EVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEP 209

Query:   121 K-FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
             + F+ CPT+YC T   P+V  S YL T+G KL   I+++WTGPKV
Sbjct:   210 ETFLFCPTEYCGTFCYPSVSQSPYLRTVGEKLLPGIEVLWTGPKV 254

GO:0004402 "histone acetyltransferase activity" evidence=IMP

GO:0004563 "beta-N-acetylhexosaminidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006044 "N-acetylglucosamine metabolic process" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=IMP

GO:0007568 "aging" evidence=IEP

GO:0010524 "positive regulation of calcium ion transport into cytosol" evidence=IMP

GO:0010616 "negative regulation of cardiac muscle adaptation" evidence=IMP

GO:0016231 "beta-N-acetylglucosaminidase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IMP

GO:0031343 "positive regulation of cell killing" evidence=IMP

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

GO:0043243 "positive regulation of protein complex disassembly" evidence=IMP

GO:0045862 "positive regulation of proteolysis" evidence=IMP

GO:0046060 "dATP metabolic process" evidence=IMP

GO:0046326 "positive regulation of glucose import" evidence=IMP

GO:0048545 "response to steroid hormone stimulus" evidence=IEP

GO:0051054 "positive regulation of DNA metabolic process" evidence=IMP

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=IMP

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP

GO:0060051 "negative regulation of protein glycosylation" evidence=IMP

GO:0060124 "positive regulation of growth hormone secretion" evidence=IMP

GO:0070265 "necrotic cell death" evidence=IMP

WB|WBGene00020596 oga-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 514 (186.0 bits), Expect = 1.3e-48, P = 1.3e-48
 Identities = 90/164 (54%), Positives = 124/164 (75%)

Query:     1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
             + +YLYAPKDD KHR+ WR+LY+ EE  +L  L+ +AK+  ++F YA+SPG DI YSS +
Sbjct:    48 LTTYLYAPKDDIKHRSLWRELYNNEEMTYLRNLVESAKDNNVNFVYAISPGKDILYSSDE 107

Query:    61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
             E+ TLK KL+QV   GC  FA+LFDDIE +M + D++ F SFAHAQV + N +F++L   
Sbjct:   108 EMDTLKNKLDQVRSVGCDSFAVLFDDIEVQMQDEDQKQFTSFAHAQVHIANTIFKYLNTK 167

Query:   121 KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
              FM CPT+YC +RAVP +++S+YLNT+G +LA +I IMWTGP+V
Sbjct:   168 TFMFCPTEYCESRAVPTLESSQYLNTIGEQLAGDIHIMWTGPRV 211


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      166       166   0.00097  107 3  11 22  0.40    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.23u 0.18s 16.41t   Elapsed:  00:00:01
  Total cpu time:  16.23u 0.18s 16.41t   Elapsed:  00:00:01
  Start:  Thu Aug 15 13:31:26 2013   End:  Thu Aug 15 13:31:27 2013

GO:0015929 "hexosaminidase activity" evidence=IDA

GO:0009100 "glycoprotein metabolic process" evidence=IMP;IDA

GO:0006470 "protein dephosphorylation" evidence=IMP

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IMP

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0040024 "dauer larval development" evidence=IGI

GO:0019915 "lipid storage" evidence=IMP

GO:0060051 "negative regulation of protein glycosylation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQQ9	NCOAT_MOUSE	2, ., 3, ., 1, ., 4, 8	0.6606	0.9879	0.1790	yes	N/A
Q8VIJ5	NCOAT_RAT	2, ., 3, ., 1, ., 4, 8	0.6545	0.9879	0.1790	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!
3rd Layer	3.2.1.52	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	166
pfam07555	306	pfam07555, NAGidase, beta-N-acetylglucosaminidase	2e-82

>gnl|CDD|219464 pfam07555, NAGidase, beta-N-acetylglucosaminidase

 Score =  245 bits (627), Expect = 2e-82
 Identities = 82/169 (48%), Positives = 106/169 (62%), Gaps = 10/169 (5%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           M++Y+YAPKDD  HR+ WR+LY  EE   L  L+ AA E  +DF YA+SPGLDITYSS +
Sbjct: 29  MNTYIYAPKDDPYHRSKWRELYPEEELAKLKELVKAANENKVDFVYAISPGLDITYSSEE 88

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           ++  L  K EQ+   G R FA+LFDDIE  +  ADK  F SFA AQ  + N+V +   +P
Sbjct: 89  DLQALLAKFEQLYDLGVRSFAVLFDDIEYTLWNADKRRFGSFAEAQADLLNKVQKEFIKP 148

Query: 121 K-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           K      + CPT+Y  + A P+     YL TLG  L  +IDIMWTG +V
Sbjct: 149 KGDVYPLIFCPTEYNGSWASPD-----YLQTLGETLDPDIDIMWTGDRV 192

This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PF07555	306	NAGidase: beta-N-acetylglucosaminidase ; InterPro:	100.0
KOG3698|consensus	891		100.0
PLN02746	347	hydroxymethylglutaryl-CoA lyase	95.21
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	94.14
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	94.09
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	94.01
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	93.77
PF09863	311	DUF2090: Uncharacterized protein conserved in bact	93.47
PRK11572	248	copper homeostasis protein CutC; Provisional	92.96
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	92.49
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	92.31
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	91.48
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	90.5
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	90.08
cd06593	308	GH31_xylosidase_YicI YicI alpha-xylosidase is a gl	88.98
cd06597	340	GH31_transferase_CtsY CtsY (cyclic tetrasaccharide	88.85
PRK15452	443	putative protease; Provisional	88.83
COG3142	241	CutC Uncharacterized protein involved in copper re	88.47
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	87.04
COG0826	347	Collagenase and related proteases [Posttranslation	86.01
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	85.96
cd06589	265	GH31 The enzymes of glycosyl hydrolase family 31 (	84.7
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	84.67
cd06600	317	GH31_MGAM-like This family includes the following	84.39
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	83.57
PF10096	243	DUF2334: Uncharacterized protein conserved in bact	82.93
PRK00915	513	2-isopropylmalate synthase; Validated	82.7
cd06592	303	GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact	80.82
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	80.5

>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases

Probab=100.00  E-value=3.5e-64  Score=430.48  Aligned_cols=160  Identities=49%  Similarity=0.887  Sum_probs=131.7

Q ss_pred             CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629            1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF   80 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F   80 (166)
                      ||+||||||||||||.+|||+||++|+++|++|+++|+++||+|+||||||++++||+++|+++|++||+||+++|||+|
T Consensus        29 mN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~F  108 (306)
T PF07555_consen   29 MNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSF  108 (306)
T ss_dssp             --EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EE
T ss_pred             CceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCCEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCC-----CCceEccccccccccCCCCCChhHHHHHhhccCCCc
Q psy629           81 ALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ-----PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEI  155 (166)
Q Consensus        81 ailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~-----~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i  155 (166)
                      |||||||++.++.+|.+.|.+.|++|++|+|+|.+++..     .+|+||||+||++++++     .||++|+++||++|
T Consensus       109 ailfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~~~~~~~~~l~~cPt~Y~~~~~~~-----~Yl~~l~~~L~~~i  183 (306)
T PF07555_consen  109 AILFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELIKKKGDVKPLIFCPTEYCGDWASP-----EYLRTLGEQLDPDI  183 (306)
T ss_dssp             EEE-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTTTCSSSS--EEEE-SS-SCHHHCC-----HHHHHHHHHS-TTS
T ss_pred             EEeecCCCCccccccccccchHHHHHHHHHHHHHHHHhccCCCCCCceEEChhhcCCCCCh-----HHHHHHHhhCCCCC
Confidence            999999999988888999999999999999999999864     35999999999998755     79999999999999


Q ss_pred             eEEeeCCCCC
Q psy629          156 DIMWTGPKVP  165 (166)
Q Consensus       156 ~i~WTG~~V~  165 (166)
                      .|||||++|+
T Consensus       184 ~i~WTG~~V~  193 (306)
T PF07555_consen  184 QIFWTGPKVC  193 (306)
T ss_dssp             EEEE-CSSSS
T ss_pred             EEEEcCCcee
Confidence            9999999998

Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....

>KOG3698|consensus

Probab=100.00  E-value=2.8e-58  Score=414.29  Aligned_cols=165  Identities=68%  Similarity=1.174  Sum_probs=163.8

Q ss_pred             CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629            1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF   80 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F   80 (166)
                      ||+|+||||||-+||.-|||+|+-||+..|+.||++|++++|+|+||||||+||.|||++++.+|++||+|+...||++|
T Consensus        47 l~tYlYAPKDDyKHR~~WRElY~vEEa~~L~~Li~aAke~~i~F~YAiSPGlDitySspkE~~TLKrKLDQV~qfGC~sf  126 (891)
T KOG3698|consen   47 LTTYLYAPKDDYKHRSLWRELYNVEEATYLRNLIEAAKENNINFVYAISPGLDITYSSPKEMDTLKRKLDQVRQFGCDSF  126 (891)
T ss_pred             cceeeecccchhHHHHHHHHHhhhHHHHHHHHHHHHHHhcCceEEEEcCCCcccccCCHHHHHHHHHHHHHHHhhCchhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEee
Q psy629           81 ALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWT  160 (166)
Q Consensus        81 ailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WT  160 (166)
                      |||||||+..++++|+|.|.++|+||+.++|+|+++||.|.|+||||+||.+++.|++..+.||+++|++|.++|+|+||
T Consensus       127 AlLFDDIe~~m~~aDkevF~sFAhAqVsitNeIy~yLg~p~FlFCPTeYC~sravPtv~~S~YLnTiGekL~~~I~ilWT  206 (891)
T KOG3698|consen  127 ALLFDDIEVQMQDADKEVFTSFAHAQVSITNEIYKYLGTPTFLFCPTEYCESRAVPTVESSQYLNTIGEKLAGDIHILWT  206 (891)
T ss_pred             hhhhhhHHHHHhHhHHHHHHHhhhheeeehHHHHHHcCCCeEEecchHHhcccccCccccchHHHHHHHHhcCCceEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy629          161 GPKVP  165 (166)
Q Consensus       161 G~~V~  165 (166)
                      |++|+
T Consensus       207 GpkVi  211 (891)
T KOG3698|consen  207 GPKVI  211 (891)
T ss_pred             CCcee
Confidence            99996

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=95.21  E-value=0.3  Score=43.13  Aligned_cols=87  Identities=11%  Similarity=0.070  Sum_probs=64.2

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.|=.|...+.+.+-. +++-+++++++++.|++.|..+...|+--..-.|++..+.+.+.+..+++.++|++.+.  +
T Consensus       140 i~~s~Sd~h~~~n~~~t-~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~--l  216 (347)
T PLN02746        140 VFASASESFSKSNINCS-IEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEIS--L  216 (347)
T ss_pred             EEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEE--e
Confidence            34466666666777655 67778999999999999999998888763333334445678999999999999999876  5


Q ss_pred             CCCCCCCCHH
Q psy629           85 DDIESEMSEA   94 (166)
Q Consensus        85 DDi~~~~~~~   94 (166)
                      =|.-|-..+.
T Consensus       217 ~DT~G~a~P~  226 (347)
T PLN02746        217 GDTIGVGTPG  226 (347)
T ss_pred             cCCcCCcCHH
Confidence            5655555443

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=94.14  E-value=0.72  Score=39.41  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             eccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629            6 YAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD   85 (166)
Q Consensus         6 YAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD   85 (166)
                      +.|=.|...+.+.+-. .++-++++++.++.|++.|+....+|+--..-.++...+.+.+.+..+++.++|++.+.  +=
T Consensus        99 ~~~~s~~~~~~n~~~~-~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~--l~  175 (287)
T PRK05692         99 FASASEAFSQKNINCS-IAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEIS--LG  175 (287)
T ss_pred             EEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEE--ec
Confidence            4455555555555544 55668899999999999999888777642211122223467888899999999999766  55


Q ss_pred             CCCCCCCHH
Q psy629           86 DIESEMSEA   94 (166)
Q Consensus        86 Di~~~~~~~   94 (166)
                      |.-+...+.
T Consensus       176 DT~G~~~P~  184 (287)
T PRK05692        176 DTIGVGTPG  184 (287)
T ss_pred             cccCccCHH
Confidence            666665544

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=94.09  E-value=0.94  Score=37.67  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=57.7

Q ss_pred             eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629            4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL   83 (166)
Q Consensus         4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail   83 (166)
                      .++.|..|...+.+++.. +++-+++++++++.|++.|..+.+++-   +   ++..+.+.+.+.++++.++|++.+.  
T Consensus        87 ~i~~~~s~~~~~~~~~~~-~~~~~~~~~~~i~~a~~~G~~v~~~~~---~---~~~~~~~~~~~~~~~~~~~G~~~i~--  157 (259)
T cd07939          87 HISIPVSDIHLAHKLGKD-RAWVLDQLRRLVGRAKDRGLFVSVGAE---D---ASRADPDFLIEFAEVAQEAGADRLR--  157 (259)
T ss_pred             EEEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEeec---c---CCCCCHHHHHHHHHHHHHCCCCEEE--
Confidence            466788888777777733 455578999999999999987665441   1   1223457777888888889999876  


Q ss_pred             cCCCCCCCCHH
Q psy629           84 FDDIESEMSEA   94 (166)
Q Consensus        84 fDDi~~~~~~~   94 (166)
                      +-|.-|.+.+.
T Consensus       158 l~DT~G~~~P~  168 (259)
T cd07939         158 FADTVGILDPF  168 (259)
T ss_pred             eCCCCCCCCHH
Confidence            55665555543

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=94.01  E-value=0.88  Score=38.54  Aligned_cols=87  Identities=14%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.|=.|...+.+.+.. .++.++...+.++.+++.|.....+|+--.+-.+.+..+.+.+++..+++.++|++.+.  +
T Consensus        92 i~~~~Sd~~~~~~~~~s-~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~--l  168 (274)
T cd07938          92 VFVSASETFSQKNINCS-IAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEIS--L  168 (274)
T ss_pred             EEEecCHHHHHHHcCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEE--E
Confidence            44555666556666654 47888999999999999999988777642222233233568888889999999999876  5


Q ss_pred             CCCCCCCCHH
Q psy629           85 DDIESEMSEA   94 (166)
Q Consensus        85 DDi~~~~~~~   94 (166)
                      -|.-+...+.
T Consensus       169 ~DT~G~~~P~  178 (274)
T cd07938         169 GDTIGVATPA  178 (274)
T ss_pred             CCCCCccCHH
Confidence            6766666554

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=93.77  E-value=0.83  Score=38.49  Aligned_cols=83  Identities=10%  Similarity=0.051  Sum_probs=54.7

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.|..|...+.++... +++-++.++++++.+++.|....+.  + ..+.-+...+.+.+.+.++++.++|++.+.  +
T Consensus        97 i~~~~sd~~~~~~~~~~-~~~~~~~~~~~i~~ak~~G~~v~~~--~-~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~--l  170 (273)
T cd07941          97 IFGKSWDLHVTEALGTT-LEENLAMIRDSVAYLKSHGREVIFD--A-EHFFDGYKANPEYALATLKAAAEAGADWLV--L  170 (273)
T ss_pred             EEEcCCHHHHHHHcCCC-HHHHHHHHHHHHHHHHHcCCeEEEe--E-EeccccCCCCHHHHHHHHHHHHhCCCCEEE--E
Confidence            45566665556667644 5677899999999999999876663  1 111001123467778888888899999876  4


Q ss_pred             CCCCCCCCH
Q psy629           85 DDIESEMSE   93 (166)
Q Consensus        85 DDi~~~~~~   93 (166)
                      -|.-|...+
T Consensus       171 ~DT~G~~~P  179 (273)
T cd07941         171 CDTNGGTLP  179 (273)
T ss_pred             ecCCCCCCH
Confidence            454444443

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function

Probab=93.47  E-value=0.41  Score=41.75  Aligned_cols=63  Identities=25%  Similarity=0.459  Sum_probs=53.4

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG   79 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~   79 (166)
                      .|-|.||+-.|        .++.+.|++|-++|+++|-+|-.-|=|..+..-+    =+.+.+-++.+|++||.=
T Consensus       148 fyHPdD~~~lr--------~~Qe~~l~~l~~ac~~sg~ElLLEvI~p~~~~~~----~~~~~~ai~r~Y~lGI~P  210 (311)
T PF09863_consen  148 FYHPDDDPELR--------LEQEAQLRRLYDACRRSGHELLLEVIPPKDMPVD----DDTYARAIERFYNLGIKP  210 (311)
T ss_pred             ecCCCCCHHHH--------HHHHHHHHHHHHHHHhcCcceeEEEecCCCCCCC----hHHHHHHHHHHHHcCCCC
Confidence            58899998886        4688999999999999999999999998876543    267888889999999963

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=92.96  E-value=1.3  Score=37.60  Aligned_cols=53  Identities=23%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             HCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC
Q psy629           39 EQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS   92 (166)
Q Consensus        39 ~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~   92 (166)
                      ..+|.....|.| |-||+||. +|++.+++=++.+.++|++-|.+-+=+=++...
T Consensus        49 ~~~ipv~vMIRPR~gdF~Ys~-~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD  102 (248)
T PRK11572         49 RVTIPVHPIIRPRGGDFCYSD-GEFAAMLEDIATVRELGFPGLVTGVLDVDGHVD  102 (248)
T ss_pred             hcCCCeEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcC
Confidence            358999999999 88999985 789999999999999999997665544444433

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=92.49  E-value=1.6  Score=36.52  Aligned_cols=96  Identities=13%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.|-.|...+.+++-. +++.++.+++.++.+++.|....++.--      ++..+.+.+.+-++++.++|++.++  +
T Consensus        92 i~~~~s~~~~~~~~~~~-~~~~~~~~~~~i~~a~~~G~~v~~~~~~------~~~~~~~~~~~~~~~~~~~G~~~i~--l  162 (268)
T cd07940          92 TFIATSDIHLKYKLKKT-REEVLERAVEAVEYAKSHGLDVEFSAED------ATRTDLDFLIEVVEAAIEAGATTIN--I  162 (268)
T ss_pred             EEecCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCeEEEeeec------CCCCCHHHHHHHHHHHHHcCCCEEE--E
Confidence            45566677666766633 4456899999999999999887754321      1122456677777788889999876  5


Q ss_pred             CCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCC
Q psy629           85 DDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ  119 (166)
Q Consensus        85 DDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~  119 (166)
                      -|.-|.+.+.+.          ..+++.+.+.++.
T Consensus       163 ~DT~G~~~P~~v----------~~lv~~l~~~~~~  187 (268)
T cd07940         163 PDTVGYLTPEEF----------GELIKKLKENVPN  187 (268)
T ss_pred             CCCCCCCCHHHH----------HHHHHHHHHhCCC
Confidence            666666654432          2345555555543

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=92.31  E-value=2.6  Score=35.84  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=56.8

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.|=.|...+.+.+.. +++-+++++++++.|++.|..+.++++= ..-.|  ..+.+.+.+-++.+.++|++.+.  +
T Consensus        93 i~~~~S~~h~~~~~~~t-~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~~~~~~G~~~i~--l  166 (280)
T cd07945          93 LLTKGSLKHCTEQLRKT-PEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVDFLSDLPIKRIM--L  166 (280)
T ss_pred             EEEeCCHHHHHHHHCcC-HHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHHHHHHcCCCEEE--e
Confidence            34455555556666644 6777899999999999999999888872 11011  12346777778888899999876  4


Q ss_pred             CCCCCCCCH
Q psy629           85 DDIESEMSE   93 (166)
Q Consensus        85 DDi~~~~~~   93 (166)
                      =|.-|...+
T Consensus       167 ~DT~G~~~P  175 (280)
T cd07945         167 PDTLGILSP  175 (280)
T ss_pred             cCCCCCCCH
Confidence            455555443

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=91.48  E-value=1.9  Score=35.25  Aligned_cols=116  Identities=21%  Similarity=0.294  Sum_probs=61.0

Q ss_pred             HHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHH-------------
Q psy629           38 KEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFA-------------  103 (166)
Q Consensus        38 ~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a-------------  103 (166)
                      +..+|.....|.| |-|+.|| +++++.+++=+..+.++|++.|-+-+=+=++....+-.+.+-+.|             
T Consensus        47 ~~~~ipv~vMIRpr~gdF~Ys-~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~  125 (201)
T PF03932_consen   47 EAVDIPVHVMIRPRGGDFVYS-DEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDE  125 (201)
T ss_dssp             HHTTSEEEEE--SSSS-S----HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGG
T ss_pred             hhcCCceEEEECCCCCCccCC-HHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHH
Confidence            4899999999999 7799997 478999999999999999999766543333333321111111111             


Q ss_pred             -HHHHHHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceEEeeC
Q psy629          104 -HAQVSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTG  161 (166)
Q Consensus       104 -~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~WTG  161 (166)
                       .-|.+-+..+.+. |...++.=     +.. .+-...-+-|+.|-+....+|.|+=-|
T Consensus       126 ~~d~~~al~~L~~l-G~~rVLTS-----Gg~-~~a~~g~~~L~~lv~~a~~~i~Im~Gg  177 (201)
T PF03932_consen  126 VPDPEEALEQLIEL-GFDRVLTS-----GGA-PTALEGIENLKELVEQAKGRIEIMPGG  177 (201)
T ss_dssp             SSTHHHHHHHHHHH-T-SEEEES-----TTS-SSTTTCHHHHHHHHHHHTTSSEEEEES
T ss_pred             hCCHHHHHHHHHhc-CCCEEECC-----CCC-CCHHHHHHHHHHHHHHcCCCcEEEecC
Confidence             0011122222222 43332211     111 111235678888888878889877655

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=90.50  E-value=3.6  Score=36.37  Aligned_cols=82  Identities=13%  Similarity=0.173  Sum_probs=59.7

Q ss_pred             eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629            4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL   83 (166)
Q Consensus         4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail   83 (166)
                      -++.|-.|...+.+++-. .++-++.+.+.++.|++.|....++.   .+   ++..+.+.+.+-++.+.++|++.+.| 
T Consensus        93 ~i~~~~Sd~h~~~~~~~s-~~~~l~~~~~~v~~a~~~G~~v~~~~---ed---~~r~~~~~l~~~~~~~~~~Ga~~I~l-  164 (378)
T PRK11858         93 HIFIATSDIHIKHKLKKT-REEVLERMVEAVEYAKDHGLYVSFSA---ED---ASRTDLDFLIEFAKAAEEAGADRVRF-  164 (378)
T ss_pred             EEEEcCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEe---cc---CCCCCHHHHHHHHHHHHhCCCCEEEE-
Confidence            367788888778888755 67778999999999999998877652   12   22235677888888888999998764 


Q ss_pred             cCCCCCCCCHH
Q psy629           84 FDDIESEMSEA   94 (166)
Q Consensus        84 fDDi~~~~~~~   94 (166)
                       =|.-|.+.+.
T Consensus       165 -~DT~G~~~P~  174 (378)
T PRK11858        165 -CDTVGILDPF  174 (378)
T ss_pred             -eccCCCCCHH
Confidence             3555555444

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=90.08  E-value=7.5  Score=32.74  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=54.5

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.|=.|...+.+++.. +++-++.++++++.|++.|+...+.+.=  .+. +..+   .|.+=++++.++|++.+.  +
T Consensus        90 i~~~~S~~~~~~~~~~~-~~e~~~~~~~~i~~a~~~G~~v~~~~ed--a~r-~~~~---~l~~~~~~~~~~g~~~i~--l  160 (262)
T cd07948          90 LVFGTSPFLREASHGKS-ITEIIESAVEVIEFVKSKGIEVRFSSED--SFR-SDLV---DLLRVYRAVDKLGVNRVG--I  160 (262)
T ss_pred             EEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEe--eCC-CCHH---HHHHHHHHHHHcCCCEEE--E
Confidence            45566666666667644 3445899999999999999887777742  111 2233   455556666788999765  6


Q ss_pred             CCCCCCCCHH
Q psy629           85 DDIESEMSEA   94 (166)
Q Consensus        85 DDi~~~~~~~   94 (166)
                      -|.-|.+.+.
T Consensus       161 ~Dt~G~~~P~  170 (262)
T cd07948         161 ADTVGIATPR  170 (262)
T ss_pred             CCcCCCCCHH
Confidence            6777776654

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose

Probab=88.98  E-value=8.4  Score=32.66  Aligned_cols=108  Identities=17%  Similarity=0.322  Sum_probs=67.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC-----------------------------------CCCCCHHHHHH
Q psy629           20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLD-----------------------------------ITYSSGKEVAT   64 (166)
Q Consensus        20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~-----------------------------------~~~s~~~d~~~   64 (166)
                      +.||.     .++|++.-++.|++++.-++|+..                                   ++|++++..+-
T Consensus        63 ~~FPd-----~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w  137 (308)
T cd06593          63 DRFPD-----PEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKW  137 (308)
T ss_pred             ccCCC-----HHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHH
Confidence            46664     789999999999999999988632                                   34556677788


Q ss_pred             HHHHHHHHHHcCCCeeEEecCC-CCCCC---CH-HHHHHHhhHHHHHHHHHHHHHHHc-CCC-CceEcccccccc
Q psy629           65 LKRKLEQVAQFGCRGFALLFDD-IESEM---SE-ADKEVFQSFAHAQVSVTNEVFEHL-GQP-KFMLCPTQYCST  132 (166)
Q Consensus        65 L~~K~~ql~~lGvr~FailfDD-i~~~~---~~-~d~~~f~~~a~aq~~l~n~v~~~l-~~~-~l~~cPt~Y~~~  132 (166)
                      ...+++.+.+.||+.|-+=+.+ ++.+.   .. ...+.-...+..+++.+.+..+.. +.. ++++.-..|.++
T Consensus       138 ~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gs  212 (308)
T cd06593         138 YKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGS  212 (308)
T ss_pred             HHHHHHHHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc
Confidence            8899999999999987652222 11100   00 001111234455666665555444 333 688887777543

YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.

>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ

Probab=88.85  E-value=13  Score=32.33  Aligned_cols=104  Identities=13%  Similarity=0.218  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEecCCCC-------------------------------------------CCCCCHHHHHHH
Q psy629           29 HLTGLISAAKEQGIDFYYALSPGLD-------------------------------------------ITYSSGKEVATL   65 (166)
Q Consensus        29 ~l~~L~~~a~~~~v~Fv~aisPG~~-------------------------------------------~~~s~~~d~~~L   65 (166)
                      ..++|++.-++.|++.+.-+.|..+                                           ++|.+++..+=-
T Consensus        86 dp~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww  165 (340)
T cd06597          86 NPKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWW  165 (340)
T ss_pred             CHHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHH
Confidence            5788888888899999877777432                                           234445556667


Q ss_pred             HHHHHHHH-HcCCCeeEEecCCCCC--C----CCHHHHHHHhhHHHHHHHHHHHHHHHcCCCCceEcccccccc
Q psy629           66 KRKLEQVA-QFGCRGFALLFDDIES--E----MSEADKEVFQSFAHAQVSVTNEVFEHLGQPKFMLCPTQYCST  132 (166)
Q Consensus        66 ~~K~~ql~-~lGvr~FailfDDi~~--~----~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt~Y~~~  132 (166)
                      ..+++++. ++||+.|-+=+-+...  .    ....-.+.-...+...++...+..+..+..+++++=+.|.+.
T Consensus       166 ~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs  239 (340)
T cd06597         166 MEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA  239 (340)
T ss_pred             HHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc
Confidence            88888888 6999999864333210  0    000011111112334444455555555556788887777654

CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>PRK15452 putative protease; Provisional

Probab=88.83  E-value=3.4  Score=37.59  Aligned_cols=58  Identities=22%  Similarity=0.273  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629           21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE   88 (166)
Q Consensus        21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~   88 (166)
                      .++.   ++|++.++.|++.|+++.+++.-     +..+++++.+.+.++++.++||+.+-  +-|++
T Consensus        42 ~f~~---edl~eav~~ah~~g~kvyvt~n~-----i~~e~el~~~~~~l~~l~~~gvDgvI--V~d~G   99 (443)
T PRK15452         42 EFNH---ENLALGINEAHALGKKFYVVVNI-----APHNAKLKTFIRDLEPVIAMKPDALI--MSDPG   99 (443)
T ss_pred             CCCH---HHHHHHHHHHHHcCCEEEEEecC-----cCCHHHHHHHHHHHHHHHhCCCCEEE--EcCHH
Confidence            4554   46888999999999999998762     22367899999999999999999855  44443

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=88.47  E-value=5.6  Score=33.56  Aligned_cols=51  Identities=25%  Similarity=0.472  Sum_probs=42.4

Q ss_pred             HHHHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCe--eEEecCC
Q psy629           35 SAAKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRG--FALLFDD   86 (166)
Q Consensus        35 ~~a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~--FailfDD   86 (166)
                      ++++..+|.+...|.| |-||+|++ .+++.+++-++...++|+.-  ||.+-.|
T Consensus        45 ~a~~~~~ipv~~MIRPRgGdFvY~~-~E~~iM~~DI~~~~~lG~~GVV~G~lt~d   98 (241)
T COG3142          45 EAVELSKIPVYVMIRPRGGDFVYSD-DELEIMLEDIRLARELGVQGVVLGALTAD   98 (241)
T ss_pred             HHHhhcCCceEEEEecCCCCcccCh-HHHHHHHHHHHHHHHcCCCcEEEeeecCC
Confidence            3444499999999999 99999986 67999999999999999998  5555444

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=87.04  E-value=6.3  Score=33.25  Aligned_cols=71  Identities=14%  Similarity=0.192  Sum_probs=51.0

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHH
Q psy629           18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEA   94 (166)
Q Consensus        18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~   94 (166)
                      +|--.|..+++.+.+.++.+++.|..+..+++=-    +++..+.+.+.+.++++.++|++.+.|  =|.-|.+.+.
T Consensus       108 iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~----~~~~~~~~~~~~~~~~~~~~Ga~~i~l--~DT~G~~~P~  178 (275)
T cd07937         108 FRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYT----GSPVHTLEYYVKLAKELEDMGADSICI--KDMAGLLTPY  178 (275)
T ss_pred             EEEeecCChHHHHHHHHHHHHHCCCeEEEEEEec----CCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCCCHH
Confidence            4555666678999999999999998887776421    112234577888888899999999774  4666665544

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=86.01  E-value=3  Score=36.77  Aligned_cols=119  Identities=25%  Similarity=0.371  Sum_probs=75.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHH-
Q psy629           21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVF-   99 (166)
Q Consensus        21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f-   99 (166)
                      -++.++   |++.++.|++.|++|.+++..-+.     +.+++.+.+=+++|.++||+.+-  +-|..--.--  ++.+ 
T Consensus        45 nfs~~~---l~e~i~~ah~~gkk~~V~~N~~~~-----~~~~~~~~~~l~~l~e~GvDavi--v~Dpg~i~l~--~e~~p  112 (347)
T COG0826          45 NFSVED---LAEAVELAHSAGKKVYVAVNTLLH-----NDELETLERYLDRLVELGVDAVI--VADPGLIMLA--RERGP  112 (347)
T ss_pred             cCCHHH---HHHHHHHHHHcCCeEEEEeccccc-----cchhhHHHHHHHHHHHcCCCEEE--EcCHHHHHHH--HHhCC
Confidence            455555   899999999999999999987443     24567789999999999999876  4443311000  0001 


Q ss_pred             --hhHHHHHHHHHHHH----HHHcCCCCceEccccccccccCCCCCChhHHHHHhhccC-CCceEEeeCC
Q psy629          100 --QSFAHAQVSVTNEV----FEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLA-KEIDIMWTGP  162 (166)
Q Consensus       100 --~~~a~aq~~l~n~v----~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~-~~i~i~WTG~  162 (166)
                        .--+..|+.+.|.-    ++.+| -.-++.|.+=+          ...+.++.++++ =+|.||-=|.
T Consensus       113 ~l~ih~S~q~~v~N~~~~~f~~~~G-~~rvVl~rEls----------~~ei~~i~~~~~~veiEvfVhGa  171 (347)
T COG0826         113 DLPIHVSTQANVTNAETAKFWKELG-AKRVVLPRELS----------LEEIKEIKEQTPDVEIEVFVHGA  171 (347)
T ss_pred             CCcEEEeeeEecCCHHHHHHHHHcC-CEEEEeCccCC----------HHHHHHHHHhCCCceEEEEEecc
Confidence              00112344444432    34456 34455666643          456888888886 6777776653

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=85.96  E-value=11  Score=30.33  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=62.4

Q ss_pred             eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629            4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL   83 (166)
Q Consensus         4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail   83 (166)
                      .++.|..|...+.+++. =+++-++.+.+.++.+++.|....+++--.  .. .+.   +.+.+-.+++.++|++.+.  
T Consensus        85 ~i~~~~s~~~~~~~~~~-~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~--~~-~~~---~~~~~~~~~~~~~g~~~i~--  155 (237)
T PF00682_consen   85 RIFISVSDLHIRKNLNK-SREEALERIEEAVKYAKELGYEVAFGCEDA--SR-TDP---EELLELAEALAEAGADIIY--  155 (237)
T ss_dssp             EEEEETSHHHHHHHTCS-HHHHHHHHHHHHHHHHHHTTSEEEEEETTT--GG-SSH---HHHHHHHHHHHHHT-SEEE--
T ss_pred             EecCcccHHHHHHhhcC-CHHHHHHHHHHHHHHHHhcCCceEeCcccc--cc-ccH---HHHHHHHHHHHHcCCeEEE--
Confidence            46777777666666763 344567899999999999999985554221  11 233   4555556666777999986  


Q ss_pred             cCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCCC
Q psy629           84 FDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQPK  121 (166)
Q Consensus        84 fDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~~  121 (166)
                      +-|..+.+.+.+          -.++++.+.+.++..+
T Consensus       156 l~Dt~G~~~P~~----------v~~lv~~~~~~~~~~~  183 (237)
T PF00682_consen  156 LADTVGIMTPED----------VAELVRALREALPDIP  183 (237)
T ss_dssp             EEETTS-S-HHH----------HHHHHHHHHHHSTTSE
T ss_pred             eeCccCCcCHHH----------HHHHHHHHHHhccCCe
Confidence            445555554432          2366777777777633

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase

Probab=84.70  E-value=9  Score=31.88  Aligned_cols=96  Identities=13%  Similarity=0.264  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHH-HHcCCCeeEEecCCCCCCCCH----------HHH
Q psy629           28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQV-AQFGCRGFALLFDDIESEMSE----------ADK   96 (166)
Q Consensus        28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql-~~lGvr~FailfDDi~~~~~~----------~d~   96 (166)
                      -..+++++..++.|++++.-++|+.         .+--..++.++ .+.||+.|-+=+.+-......          ...
T Consensus        66 pdp~~~i~~l~~~g~~~~~~~~P~v---------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~  136 (265)
T cd06589          66 PNPKSMIDELHDNGVKLVLWIDPYI---------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHE  136 (265)
T ss_pred             CCHHHHHHHHHHCCCEEEEEeChhH---------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHH
Confidence            3568899999999999999999987         45566667665 899999998655553321100          011


Q ss_pred             HHHhhHHHHHHHHHHHHHHHc--CCCCceEcccccccc
Q psy629           97 EVFQSFAHAQVSVTNEVFEHL--GQPKFMLCPTQYCST  132 (166)
Q Consensus        97 ~~f~~~a~aq~~l~n~v~~~l--~~~~l~~cPt~Y~~~  132 (166)
                      +.=...+..+++.+.+..+..  +..+++++-+.|.+.
T Consensus       137 ~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs  174 (265)
T cd06589         137 EMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGS  174 (265)
T ss_pred             HHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc
Confidence            100123444555554444433  334688887777553

All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=84.67  E-value=4.6  Score=35.49  Aligned_cols=82  Identities=23%  Similarity=0.205  Sum_probs=56.9

Q ss_pred             eeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEe
Q psy629            4 YLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALL   83 (166)
Q Consensus         4 YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fail   83 (166)
                      .+|.|-.|...+.+++-. .++-++.+.+.++.|++.|..+.++  + .+.   +..+.+.+.+-++.+.++|++.+.  
T Consensus        90 ~i~~~~Sd~~~~~~~~~s-~~e~l~~~~~~i~~ak~~g~~v~~~--~-ed~---~r~~~~~l~~~~~~~~~~Ga~~i~--  160 (365)
T TIGR02660        90 HISIPVSDLQIEAKLRKD-RAWVLERLARLVSFARDRGLFVSVG--G-EDA---SRADPDFLVELAEVAAEAGADRFR--  160 (365)
T ss_pred             EEEEccCHHHHHHHhCcC-HHHHHHHHHHHHHHHHhCCCEEEEe--e-cCC---CCCCHHHHHHHHHHHHHcCcCEEE--
Confidence            467787777667777644 4555899999999999999876654  2 122   223467777888888899999865  


Q ss_pred             cCCCCCCCCHH
Q psy629           84 FDDIESEMSEA   94 (166)
Q Consensus        84 fDDi~~~~~~~   94 (166)
                      +=|.-|.+.+.
T Consensus       161 l~DT~G~~~P~  171 (365)
T TIGR02660       161 FADTVGILDPF  171 (365)
T ss_pred             EcccCCCCCHH
Confidence            55555554433

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II

Probab=84.39  E-value=18  Score=31.01  Aligned_cols=99  Identities=13%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEecCCCC-------------------------------------CCCCCHHHHHHHHHHHHH
Q psy629           29 HLTGLISAAKEQGIDFYYALSPGLD-------------------------------------ITYSSGKEVATLKRKLEQ   71 (166)
Q Consensus        29 ~l~~L~~~a~~~~v~Fv~aisPG~~-------------------------------------~~~s~~~d~~~L~~K~~q   71 (166)
                      ..++|++.-++.|++++.-++|+..                                     ++|++++..+--.++++.
T Consensus        65 dp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~  144 (317)
T cd06600          65 EPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSE  144 (317)
T ss_pred             CHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHH
Confidence            4678888888899999888888642                                     355667777778888888


Q ss_pred             HH-HcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHc--CCCCceEcccccccc
Q psy629           72 VA-QFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL--GQPKFMLCPTQYCST  132 (166)
Q Consensus        72 l~-~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l--~~~~l~~cPt~Y~~~  132 (166)
                      +. ++||+.|-+=+.+-..-   .+  .-...+..+++.+.+..+..  +..+++++-..|.+.
T Consensus       145 ~~~~~gvdg~w~D~~Ep~~~---~~--~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~  203 (317)
T cd06600         145 WLNSQGVDGIWLDMNEPSDF---EK--VHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGS  203 (317)
T ss_pred             HhhcCCCceEEeeCCCCccH---HH--hcchhhHHHHHHHHHHHHHhcCCCCceEEEecccccc
Confidence            87 89999988544432110   11  00112333343333333322  234688888887664

MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=83.57  E-value=22  Score=28.80  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=54.4

Q ss_pred             eccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629            6 YAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD   85 (166)
Q Consensus         6 YAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD   85 (166)
                      +.+..|.+...+++. =.++.++.+.+.++.+++.|+.+.+.+..-..- ..+   .+.+.+-++.+.++|++.+.  +-
T Consensus        94 ~~~~s~~~~~~~~~~-~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~---~~~l~~~~~~~~~~g~~~i~--l~  166 (265)
T cd03174          94 FDSASETHSRKNLNK-SREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-KTD---PEYVLEVAKALEEAGADEIS--LK  166 (265)
T ss_pred             EEecCHHHHHHHhCC-CHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-CCC---HHHHHHHHHHHHHcCCCEEE--ec
Confidence            344445444444332 245578899999999999999999998763220 112   35566677777899999888  44


Q ss_pred             CCCCCCCHHH
Q psy629           86 DIESEMSEAD   95 (166)
Q Consensus        86 Di~~~~~~~d   95 (166)
                      |.-+.+.+++
T Consensus       167 Dt~G~~~P~~  176 (265)
T cd03174         167 DTVGLATPEE  176 (265)
T ss_pred             hhcCCcCHHH
Confidence            6555555543

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function

Probab=82.93  E-value=16  Score=30.28  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCeEEEEecCCC-CCCCC---CHHHHHHHHHHHHHHHHcCCCe----eEEec-CCCCCCCCH
Q psy629           23 SVEEAEHLTGLISAAKEQGIDFYYALSPGL-DITYS---SGKEVATLKRKLEQVAQFGCRG----FALLF-DDIESEMSE   93 (166)
Q Consensus        23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~-~~~~s---~~~d~~~L~~K~~ql~~lGvr~----Failf-DDi~~~~~~   93 (166)
                      |...++.|+++++...+.||.|.+++-|-. +-...   +-.+-..+++.|+.+.+-|=..    +.--. +.+++...+
T Consensus        11 P~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHGYtHq~~~~~sg~~~e   90 (243)
T PF10096_consen   11 PFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHGYTHQYGNSVSGDGFE   90 (243)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEecceecCCCcccccce
Confidence            446788999999999999999999999932 21110   1133467788888888877322    22222 222222110


Q ss_pred             HHHHHH---hhHHHHHHHHHHH--HHHHcCCCCceEcccccccc
Q psy629           94 ADKEVF---QSFAHAQVSVTNE--VFEHLGQPKFMLCPTQYCST  132 (166)
Q Consensus        94 ~d~~~f---~~~a~aq~~l~n~--v~~~l~~~~l~~cPt~Y~~~  132 (166)
                      -....+   .+...+..+|-+-  +.+.+|-.+..|.|.-|..+
T Consensus        91 f~~~~~~~~~~~~~a~~ri~~gl~~l~~~gi~p~~f~aP~y~~s  134 (243)
T PF10096_consen   91 FWDSEFDAGDSEEEAKERIEKGLEILAELGIYPVGFEAPHYWAS  134 (243)
T ss_pred             eccccccccCCHHHHHHHHHHHHHHHHHCCCcccEEECCccccC
Confidence            000000   1122333333333  34566778888888888765

>PRK00915 2-isopropylmalate synthase; Validated

Probab=82.70  E-value=19  Score=33.30  Aligned_cols=80  Identities=13%  Similarity=0.086  Sum_probs=58.6

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      +|.|-.|...+.+++.. .++-++.+.+.++.|++.|.++.|+.-   |.   +..+.+.+.+-++.+.++|++.+.  +
T Consensus        98 i~~~~Sd~h~~~~l~~s-~~e~l~~~~~~v~~ak~~g~~v~f~~e---d~---~r~d~~~l~~~~~~~~~~Ga~~i~--l  168 (513)
T PRK00915         98 TFIATSPIHMEYKLKMS-REEVLEMAVEAVKYARSYTDDVEFSAE---DA---TRTDLDFLCRVVEAAIDAGATTIN--I  168 (513)
T ss_pred             EEECCcHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEeC---CC---CCCCHHHHHHHHHHHHHcCCCEEE--E
Confidence            67777777667777765 566789999999999999998766543   22   123567788888889999999865  4


Q ss_pred             CCCCCCCCH
Q psy629           85 DDIESEMSE   93 (166)
Q Consensus        85 DDi~~~~~~   93 (166)
                      -|.-+.+.+
T Consensus       169 ~DTvG~~~P  177 (513)
T PRK00915        169 PDTVGYTTP  177 (513)
T ss_pred             ccCCCCCCH
Confidence            555555443

>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase

Probab=80.82  E-value=5.6  Score=33.94  Aligned_cols=58  Identities=14%  Similarity=0.343  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEecCCCC------------------------------------CCCCCHHHHHHHHHHHHHH
Q psy629           29 HLTGLISAAKEQGIDFYYALSPGLD------------------------------------ITYSSGKEVATLKRKLEQV   72 (166)
Q Consensus        29 ~l~~L~~~a~~~~v~Fv~aisPG~~------------------------------------~~~s~~~d~~~L~~K~~ql   72 (166)
                      ..+++++.-++.|++++.-|.|+..                                    ++|++++..+-..++++++
T Consensus        71 dp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~  150 (303)
T cd06592          71 DPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSL  150 (303)
T ss_pred             CHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999532                                    2455677888888999999


Q ss_pred             H-HcCCCeeEEecCC
Q psy629           73 A-QFGCRGFALLFDD   86 (166)
Q Consensus        73 ~-~lGvr~FailfDD   86 (166)
                      . ++||+.|-+=+.+
T Consensus       151 ~~~~Gvdg~w~D~~E  165 (303)
T cd06592         151 QEKYGIDSFKFDAGE  165 (303)
T ss_pred             HHHhCCcEEEeCCCC
Confidence            8 9999999876655

Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=80.50  E-value=14  Score=32.55  Aligned_cols=82  Identities=12%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      +|.|=.|...+.+++.. +++-++.+.+.++.|++.|..+.+++.   +.   +..+.+.+.+-++++.++|++.+.  +
T Consensus        90 i~~~~Sd~~~~~~~~~~-~~~~~~~~~~~i~~ak~~G~~v~~~~e---da---~r~~~~~l~~~~~~~~~~g~~~i~--l  160 (363)
T TIGR02090        90 TFIATSPIHLKYKLKKS-RDEVLEKAVEAVEYAKEHGLIVEFSAE---DA---TRTDIDFLIKVFKRAEEAGADRIN--I  160 (363)
T ss_pred             EEEcCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCCEEEEEEe---ec---CCCCHHHHHHHHHHHHhCCCCEEE--E
Confidence            56676665556677743 566789999999999999988766653   21   123467788888889999999866  5


Q ss_pred             CCCCCCCCHHH
Q psy629           85 DDIESEMSEAD   95 (166)
Q Consensus        85 DDi~~~~~~~d   95 (166)
                      -|.-+.+.+.+
T Consensus       161 ~DT~G~~~P~~  171 (363)
T TIGR02090       161 ADTVGVLTPQK  171 (363)
T ss_pred             eCCCCccCHHH
Confidence            56555555443

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
2xsa_A	447	Ogoga Apostructure Length = 447		2e-36
2j4g_A	715	Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Co		3e-24
2j47_A	716	Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Co		3e-24
2cho_A	716	Bacteroides Thetaiotaomicron Hexosaminidase With O-		3e-24
2jiw_A	716	Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Co		3e-24
2vvn_A	737	Btgh84 In Complex With Nh-Butylthiazoline Length =		4e-24
2wzi_A	737	Btgh84 D243n In Complex With 5f-Oxazoline Length =		1e-23
2wzh_A	737	Btgh84 D242n In Complex With Meumb-Derived Oxazolin		1e-23
2chn_A	716	Bacteroides Thetaiotaomicron Hexosaminidase With O-		5e-22
2xpk_A	594	Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Se		5e-22
2v5d_A	737	Structure Of A Family 84 Glycoside Hydrolase And A		6e-21
2j62_A	594	Structure Of A Bacterial O-glcnacase In Complex Wit		7e-21
2cbi_A	594	Structure Of The Clostridium Perfringens Nagj Famil		7e-21
2ydq_A	590	Cpoga D298n In Complex With Hoga-Derived O-Glcnac P		2e-20

>pdb|2XSA|A Chain A, Ogoga Apostructure Length = 447

Iteration: 1
 Score =  147 bits (372), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           M++Y+Y PKDD   RA WR  Y       LT L  AA  +G+ FY +L+P LD+TYS  +
Sbjct: 31  MNTYIYGPKDDVHVRARWRVPYDAAGLARLTELRDAAAARGMVFYVSLAPCLDVTYSDPQ 90
Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL-GQ 119
           + A L  +++Q+A+ G R   LLFDDI S + EAD+  F SFA AQ  ++N V  HL G 
Sbjct: 91  DRAALLARVDQLARAGLRNLVLLFDDIPSVLPEADRHRFDSFAEAQADLSNMVLRHLRGA 150
Query: 120 PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
              + CPT+YC   A  + + S YL  LGS L   IDI WTGP++
Sbjct: 151 GHVVFCPTEYCGRMAGGDPRGSAYLQRLGSTLDPAIDIFWTGPEI 195

>pdb|2J4G|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex With N-Butyl-Thiazoline Inhibitor Length = 715

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 157 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 215
Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K         Q  + N + E   Q
Sbjct: 216 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 266
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 267 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 313

>pdb|2J47|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex With A Imidazole-Pugnac Hybrid Inhibitor Length = 716

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 216
Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K         Q  + N + E   Q
Sbjct: 217 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 267
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 268 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 314

>pdb|2CHO|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O- Glcnacase Activity Length = 716

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 216
Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K         Q  + N + E   Q
Sbjct: 217 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 267
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 268 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 314

>pdb|2JIW|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex With 2-acetylamino-2-deoxy-1-epivalienamine Length = 716

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 216
Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K         Q  + N + E   Q
Sbjct: 217 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 267
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 268 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 314

>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline Length = 737

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 179 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 237
Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K         Q  + N + E   Q
Sbjct: 238 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 288
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 289 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 335

>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline Length = 737

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 179 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 237
Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FD+I  E +   K         Q  + N + E   Q
Sbjct: 238 EDRDLLLAKFEKMYQLGVRSFAVFFDNISGEGTNPQK---------QAELLNYIDEKFAQ 288
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 289 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 335

>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline Length = 737

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 179 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 237
Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ F+DI  E +   K         Q  + N + E   Q
Sbjct: 238 EDRDLLLAKFEKMYQLGVRSFAVFFNDISGEGTNPQK---------QAELLNYIDEKFAQ 288
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 289 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 335

>pdb|2CHN|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O- Glcnacase Activity - Nag-Thiazoline Complex Length = 716

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 19/169 (11%)
Query: 2   DSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           ++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  +
Sbjct: 159 NTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK-E 217
Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           +   L  K E+  Q G R FA+ FDDI  E +   K         Q  + N + E   Q 
Sbjct: 218 DRDLLLAKFEKXYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQV 268
Query: 121 K-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
           K      + CPT+Y  + + P   N  YL TLG KL   I I WTG +V
Sbjct: 269 KPDINQLVXCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIXWTGDRV 314

>pdb|2XPK|A Chain A, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective Against Lysosomal Hexosaminidases Length = 594

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +   +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59  GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
           G+E    L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            +P  + CPT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 296 -KP-LITCPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340

>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family 32 Carbohydrate-Binding Module In Tandem From Clostridium Perfringens Length = 737

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +   +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59  GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
           G+E    L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            +P  +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 296 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340

>pdb|2J62|A Chain A, Structure Of A Bacterial O-glcnacase In Complex With Glcnacstatin Length = 594

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +   +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59  GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
           G+E    L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            +P  +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 296 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340

>pdb|2CBI|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84 Glycoside Hydrolase, A Homologue Of Human O-Glcnacase Length = 594

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +   +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59  GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
           G+E    L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            +P  +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 296 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340

>pdb|2YDQ|A Chain A, Cpoga D298n In Complex With Hoga-Derived O-Glcnac Peptide Length = 590

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +   +
Sbjct: 182 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 241
Query: 59  GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
           G+E    L  K E +   G R FA+ +D+I+ + +    +V   F    V    +V    
Sbjct: 242 GEEDFNHLITKAESLYDMGVRSFAIYWDNIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 297
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            +P  +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 298 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 342

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
2xsa_A	447	Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION,	2e-59
2v5d_A	737	O-GLCNACASE NAGJ; family 32 carbohydrate binding m	2e-38
2v5c_A	594	O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrol	4e-35
2cho_A	716	Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro	3e-31

>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A* Length = 447

 Score =  190 bits (482), Expect = 2e-59
 Identities = 73/165 (44%), Positives = 98/165 (59%), Gaps = 1/165 (0%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
           M++Y+Y PKDD   RA WR  Y       LT L  AA  +G+ FY +L+P LD+TYS  +
Sbjct: 31  MNTYIYGPKDDVHVRARWRVPYDAAGLARLTELRDAAAARGMVFYVSLAPCLDVTYSDPQ 90

Query: 61  EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
           + A L  +++Q+A+ G R   LLFDDI S + EAD+  F SFA AQ  ++N V  HL   
Sbjct: 91  DRAALLARVDQLARAGLRNLVLLFDDIPSVLPEADRHRFDSFAEAQADLSNMVLRHLRGA 150

Query: 121 K-FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
              + CPT+YC   A  + + S YL  LGS L   IDI WTGP++
Sbjct: 151 GHVVFCPTEYCGRMAGGDPRGSAYLQRLGSTLDPAIDIFWTGPEI 195

>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens} Length = 737

 Score =  137 bits (345), Expect = 2e-38
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 9/166 (5%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG- 59
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +    
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239

Query: 60  --KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
             ++   L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDVK--- 296

Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPK 163
                +  PT+Y +   V N +   Y       +   I++MWTGP 
Sbjct: 297 ---PLITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPG 339

>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A* Length = 594

 Score =  127 bits (320), Expect = 4e-35
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG- 59
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +    
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239

Query: 60  --KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
             ++   L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDVKP-- 297

Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
                +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 298 ----LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340

>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* Length = 716

 Score =  117 bits (293), Expect = 3e-31
 Identities = 63/170 (37%), Positives = 88/170 (51%), Gaps = 19/170 (11%)

Query: 1   MDSYLYAPKDDYKHR-AYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H    WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 216

Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K         Q  + N + E   Q
Sbjct: 217 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 267

Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
            K      ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 268 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 314

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2xsa_A	447	Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION,	100.0
2cho_A	716	Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro	100.0
2v5c_A	594	O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrol	100.0
2v5d_A	737	O-GLCNACASE NAGJ; family 32 carbohydrate binding m	100.0
2epl_X	627	N-acetyl-beta-D-glucosaminidase; glycoside hydrola	96.04
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	94.06
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	93.23
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	92.86
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	92.18
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	91.66
1jak_A	512	Beta-N-acetylhexosaminidase; glycoside hydrolase,	91.58
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	91.52
3ble_A	337	Citramalate synthase from leptospira interrogans;	91.16
1now_A	507	Beta-hexosaminidase beta chain; (beta/alpha)8-barr	88.04
2xn2_A	732	Alpha-galactosidase; hydrolase, glycosidase; HET:	86.0
4aie_A	549	Glucan 1,6-alpha-glucosidase; hydrolase, glycoside	84.29
4gqr_A	496	Pancreatic alpha-amylase; glycosyl hydrolase, diab	81.94
1h1n_A	305	Endo type cellulase ENGI; hydrolase, glycosyl hydr	81.92
2f2h_A	773	Putative family 31 glucosidase YICI; BETA8alpha8 b	80.01

>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*

Probab=100.00  E-value=1.4e-66  Score=461.20  Aligned_cols=166  Identities=44%  Similarity=0.771  Sum_probs=162.6

Q ss_pred             CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCee
Q psy629            1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF   80 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~F   80 (166)
                      ||+||||||||||||.+|||+||++|+++|++|+++|+++||+|+||||||++|+||+++|+++|++||+||+++|||+|
T Consensus        31 mNtYiYAPKDDpyhr~~WRe~Yp~eel~~l~eLv~~a~~~~V~Fv~aisPG~di~~s~~~d~~~L~~K~~ql~~lGVr~F  110 (447)
T 2xsa_A           31 MNTYIYGPKDDVHVRARWRVPYDAAGLARLTELRDAAAARGMVFYVSLAPCLDVTYSDPQDRAALLARVDQLARAGLRNL  110 (447)
T ss_dssp             CCEEEECCTTCTTTTTTTTSCCCHHHHHHHHHHHHHHHTTTCEEEEEECCCSSCCTTCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CceEEEccCCChHHHHhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCCC-CceEccccccccccCCCCCChhHHHHHhhccCCCceEEe
Q psy629           81 ALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP-KFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMW  159 (166)
Q Consensus        81 ailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~~-~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~W  159 (166)
                      |||||||++.+|.+|++.|+++|++|++|+|+|+++++++ +|+||||+||++|+++++++++||++|+++||++|+|||
T Consensus       111 aIlfDDI~~~~~~~d~~~f~s~a~aQ~~l~N~v~~~l~~~~~l~~cPt~Y~~~~~~~~~~~s~Yl~~l~~~Ld~~I~V~W  190 (447)
T 2xsa_A          111 VLLFDDIPSVLPEADRHRFDSFAEAQADLSNMVLRHLRGAGHVVFCPTEYCGRMAGGDPRGSAYLQRLGSTLDPAIDIFW  190 (447)
T ss_dssp             EEECSSCCSSCCTTTTTTCSSHHHHHHHHHHHHHHHTTTSSEEEEECSSCSHHHHTSSGGGCHHHHHHHHHSCTTSEEEE
T ss_pred             EEeccCCCCccchhhhhhhhhHHHHHHHHHHHHHHHhCCCCceEEeChhhcCCcccCCCCCcHHHHHHHhhCCCCCeEEe
Confidence            9999999999999999999999999999999999999987 799999999999999988889999999999999999999


Q ss_pred             eCCCCCC
Q psy629          160 TGPKVPK  166 (166)
Q Consensus       160 TG~~V~~  166 (166)
                      ||++|+.
T Consensus       191 TG~~V~s  197 (447)
T 2xsa_A          191 TGPEIVS  197 (447)
T ss_dssp             CCSSSSC
T ss_pred             cCCcccC
Confidence            9999973

>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*

Probab=100.00  E-value=2.5e-35  Score=274.46  Aligned_cols=152  Identities=41%  Similarity=0.743  Sum_probs=138.9

Q ss_pred             CCeeeeccCCChhhhh-hhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629            1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG   79 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~-~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~   79 (166)
                      ||+|.|.|+||||||. .||..||+.+.+++++|++.|+++||+||+.||||.+++|+ ++++.+|++||+||+++|||+
T Consensus       158 lN~~h~hl~Ddp~~~~~~wr~~yP~lt~~ei~elv~yA~~rgI~vvpeI~Pg~~~~~~-~~~~~~l~~k~~~l~~lG~r~  236 (716)
T 2cho_A          158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWN-KEDRDLLLAKFEKMYQLGVRS  236 (716)
T ss_dssp             CCEEEECCTTCTTTSTTGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTCCSS-HHHHHHHHHHHHHHHHTTCCE
T ss_pred             CcEEEEeeccCcccccccccccCChhhHHHHHHHHHHHHHcCCEEEEeecccccCCCC-HHHHHHHHHHHHHHHhcCCCe
Confidence            8999999999999995 99999999999999999999999999999999999999996 688999999999999999999


Q ss_pred             eEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCC-----CCceEccccccccccCCCCCChhHHHHHhhccCCC
Q psy629           80 FALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ-----PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKE  154 (166)
Q Consensus        80 FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~-----~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~  154 (166)
                      |+|+||||.+..+.         +.+|++++|++.+++-.     .+|+||||+|+..|..+.   +.|+++||++||++
T Consensus       237 ~~i~~Dd~~~~g~~---------~~~~~~ll~~~~~~~~~~~~~~~~l~~~Pt~Y~~~~~~~~---~~y~~~l~~~l~~~  304 (716)
T 2cho_A          237 FAVFFDDISGEGTN---------PQKQAELLNYIDEKFAQVKPDINQLVMCPTEYNKSWSNPN---GNYLTTLGDKLNPS  304 (716)
T ss_dssp             EEEECCSCCSGGGC---------HHHHHHHHHHHHHHTTTTSSSCCCEEEECSSCSGGGSCTT---SSHHHHHHHHSCTT
T ss_pred             eEEecccCCCCCcc---------hHHHHHHHHHHHHHHHhhcCCcccceeCcHHHhhhccccc---chHHHHHhhhCCcc
Confidence            99999999986542         35799999999988632     369999999999876542   68999999999999


Q ss_pred             ceEEeeCCCCC
Q psy629          155 IDIMWTGPKVP  165 (166)
Q Consensus       155 i~i~WTG~~V~  165 (166)
                      |+|||||+.|+
T Consensus       305 I~v~wTG~~V~  315 (716)
T 2cho_A          305 IQIMWTGDRVI  315 (716)
T ss_dssp             SEEEECCSSSS
T ss_pred             ceEEecCCccc
Confidence            99999999997

>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*

Probab=100.00  E-value=1.1e-33  Score=258.91  Aligned_cols=154  Identities=32%  Similarity=0.630  Sum_probs=139.9

Q ss_pred             CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC---HHHHHHHHHHHHHHHHcCC
Q psy629            1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS---GKEVATLKRKLEQVAQFGC   77 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~---~~d~~~L~~K~~ql~~lGv   77 (166)
                      ||+|.|.++||+|||..||++||.++.+++++|++.|+++||+|+++||||+++++++   .++++.|.+|+++|.+.|+
T Consensus       180 lN~~h~Hl~DDq~~~~~wr~~Yp~~~~~~i~elv~yA~~rgI~vv~~i~Pe~d~~~~~~~~~~~~~~l~~k~~~l~~~G~  259 (594)
T 2v5c_A          180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDAGEEDFNHLITKAESLYDMGV  259 (594)
T ss_dssp             CCEEEECCTTCGGGTTTTTSCCCGGGHHHHHHHHHHHHHTTCEEEEEECGGGTCCCSTHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CcEEEEecccCcccccccCCCCCHHHHHHHHHHHHHHHHCCcEEEEecCCCccccCCCcchHHHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999999999999999999999999999997   6799999999999999999


Q ss_pred             CeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHH-----cCCCCceEccccccccccCCCCCChhHHHHHhhccC
Q psy629           78 RGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEH-----LGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLA  152 (166)
Q Consensus        78 r~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~-----l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~  152 (166)
                      ++|.|.+|||.....           .+|+.++|++.+.     .+..+++|||++|+.+++.++...++|+++|+++||
T Consensus       260 ~~f~IG~DEi~~~~~-----------~~q~~v~n~~~~~~~~a~~~~~~~i~~P~~Y~~~~~~~~~~~~~Y~~~l~~~L~  328 (594)
T 2v5c_A          260 RSFAIYWDDIQDKSA-----------AKHAQVLNRFNEEFVKAKGDVKPLITVPTEYDTGAMVSNGQPRAYTRIFAETVD  328 (594)
T ss_dssp             CEEEEECSSCSCCCH-----------HHHHHHHHHHHHHTHHHHSSCCCCEEECSSCSHHHHEETTEECHHHHHHHHHSC
T ss_pred             cEEEecCccCCcccc-----------hhHHHHHHHHHHHHHHhhcccCceEEecccccccccccCccchHHHHHhhhhCC
Confidence            999999999997643           4678888877532     234579999999999877666667899999999999


Q ss_pred             CCceEEeeCCCCC
Q psy629          153 KEIDIMWTGPKVP  165 (166)
Q Consensus       153 ~~i~i~WTG~~V~  165 (166)
                      ++|.|||||++|+
T Consensus       329 ~~I~v~WTG~~V~  341 (594)
T 2v5c_A          329 PSIEVMWTGPGVV  341 (594)
T ss_dssp             TTSEEEECSSSSS
T ss_pred             CCcEEEeCCCccc
Confidence            9999999999997

>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}

Probab=100.00  E-value=6.8e-33  Score=258.56  Aligned_cols=154  Identities=32%  Similarity=0.630  Sum_probs=135.2

Q ss_pred             CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC---HHHHHHHHHHHHHHHHcCC
Q psy629            1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS---GKEVATLKRKLEQVAQFGC   77 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~---~~d~~~L~~K~~ql~~lGv   77 (166)
                      ||+|.|.++||++||..||++||.++.+++++|++.|+++||+|+++||||+++++++   .++++.|.+||++|.+.|+
T Consensus       180 ~N~~h~hl~Dd~~~~~~wr~~y~~~~~~~~~elv~ya~~rgI~vv~~i~P~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~  259 (737)
T 2v5d_A          180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDAGEEDFNHLITKAESLYDMGV  259 (737)
T ss_dssp             CCEEECCCSCCSTTTTTC-----CTTHHHHHHHHHHHHHTTCEEEECCCCGGGCCCSSBTTHHHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEecccccchhhccCcCCCHHHHHHHHHHHHHHHHCCCEEEEecCCCccccCCCcccHHHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999999999999999999999999999999999986   6899999999999999999


Q ss_pred             CeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHH-----cCCCCceEccccccccccCCCCCChhHHHHHhhccC
Q psy629           78 RGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEH-----LGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLA  152 (166)
Q Consensus        78 r~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~-----l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~  152 (166)
                      ++|.|++|||.....           .+|+.++|++.+.     .+..+++|||++|+.+++.++...++|+++|++.||
T Consensus       260 ~~f~ig~DEi~~~~~-----------~~q~~v~~~~~~~~~~~~~~~~~~i~~P~~y~~~~~~~~~~~~~y~~~~~~~L~  328 (737)
T 2v5d_A          260 RSFAIYWDDIQDKSA-----------AKHAQVLNRFNEEFVKAKGDVKPLITVPTEYDTGAMVSNGQPRAYTRIFAETVD  328 (737)
T ss_dssp             CEEEEECSSCCCCCH-----------HHHHHHHHHHHHHTHHHHSSCCCCEEECSCCBHHHHBSSSSBCHHHHHHHHHSC
T ss_pred             cEEEEcCccCCcccc-----------hhHHHHHHHHHHHHHHhhcccCceEEecccccccccccCccchHHHHHHHhhCC
Confidence            999999999997543           4678888877532     234679999999999877666678899999999999


Q ss_pred             CCceEEeeCCCCC
Q psy629          153 KEIDIMWTGPKVP  165 (166)
Q Consensus       153 ~~i~i~WTG~~V~  165 (166)
                      ++|.|||||++|+
T Consensus       329 ~~i~v~WTG~~V~  341 (737)
T 2v5d_A          329 PSIEVMWTGPGVV  341 (737)
T ss_dssp             TTSEEEECBSSSS
T ss_pred             CCceEEeCCCccc
Confidence            9999999999997

>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A

Probab=96.04  E-value=0.06  Score=49.49  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             eccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEec-CCC--------------------CCCCCCHHHHHH
Q psy629            6 YAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALS-PGL--------------------DITYSSGKEVAT   64 (166)
Q Consensus         6 YAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais-PG~--------------------~~~~s~~~d~~~   64 (166)
                      |..|..|+. ..|+..|+.++   ++++++.|+++||++|--|- ||-                    .+|.++++.++-
T Consensus       127 ~ei~~~P~l-~~~~~~YT~~d---i~eiv~yA~~rgI~VIPEID~PGH~~a~l~~g~~~yp~L~~~~~~l~~~~~~t~~f  202 (627)
T 2epl_X          127 YEIENQPYF-GYFRGRYTVAE---LQEIEDYAADFDMSFVPCIQTLAHLSAFVKWGIKEVQELRDVEDILLIGEEKVYDL  202 (627)
T ss_dssp             BCCTTCTTT-TTTTTCBCHHH---HHHHHHHHHHTTCEEEEECCSSSCCHHHHTCCSHHHHTTEEETTEECTTCHHHHHH
T ss_pred             cccCCCccc-CccCCCcCHHH---HHHHHHHHHHcCCEEEEeeccCCcHHHHHhhhhhhcccccCCCCccCCCChhHHHH
Confidence            466777877 45789998876   78899999999999998884 442                    256678889999


Q ss_pred             HHHHHHHHHHcCCCeeEEecCCCCCCCCHH--HHHHHhhHHHHHHHHHHHHHHHc
Q psy629           65 LKRKLEQVAQFGCRGFALLFDDIESEMSEA--DKEVFQSFAHAQVSVTNEVFEHL  117 (166)
Q Consensus        65 L~~K~~ql~~lGvr~FailfDDi~~~~~~~--d~~~f~~~a~aq~~l~n~v~~~l  117 (166)
                      +.+-|+++.+...+.|-|-.|.+....-.+  ....+.+....|...+|+|.+.+
T Consensus       203 l~~v~~Ev~~F~~~~~HiGgDE~~~~~~~~~~~~~g~~~~~~l~~~f~~~v~~~v  257 (627)
T 2epl_X          203 IEGMFQTMAHLHTRKINIGMDEAHLVGLGRYLIKHGFQNRSLLMCQHLERVLDIA  257 (627)
T ss_dssp             HHHHHHHHTTSSCCEEECCCCCCTTTTSSHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEecchhcccchhhHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence            999999999977788899999998532111  22234456788999999988766

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=94.06  E-value=0.77  Score=37.13  Aligned_cols=55  Identities=15%  Similarity=0.305  Sum_probs=47.5

Q ss_pred             HHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC
Q psy629           37 AKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS   92 (166)
Q Consensus        37 a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~   92 (166)
                      |+..+|.....|.| |-||+|| ++|++.+++-+..+.++|++-|.+-+=+-++...
T Consensus        50 ~~~~~ipV~vMIRPR~GdF~Ys-~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD  105 (224)
T 2bdq_A           50 LHEKGISVAVMIRPRGGNFVYN-DLELRIMEEDILRAVELESDALVLGILTSNNHID  105 (224)
T ss_dssp             HHHTTCEEEEECCSSSSCSCCC-HHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBC
T ss_pred             hhhcCCceEEEECCCCCCCcCC-HHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcC
Confidence            67889999999999 9999998 5789999999999999999997776666566554

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=93.23  E-value=0.44  Score=39.33  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=54.1

Q ss_pred             eccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecC
Q psy629            6 YAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFD   85 (166)
Q Consensus         6 YAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfD   85 (166)
                      +.+-.|...+.+.+.. .++-++.+++.++.|++.|+.....|+=-.+-.+.+..+.+.+++-++.+.+.|++.++|-  
T Consensus       103 ~~~~s~~~~~~~~~~s-~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~--  179 (302)
T 2ftp_A          103 FAAASEAFSQRNINCS-IKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLG--  179 (302)
T ss_dssp             EEESCHHHHHHHHSSC-HHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEE--
T ss_pred             EEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEe--
Confidence            3444444445555544 3667899999999999999987655543111011112344667777788889999999988  


Q ss_pred             CCCCCCC
Q psy629           86 DIESEMS   92 (166)
Q Consensus        86 Di~~~~~   92 (166)
                      |.-+...
T Consensus       180 DT~G~~~  186 (302)
T 2ftp_A          180 DTIGVGT  186 (302)
T ss_dssp             ESSSCCC
T ss_pred             CCCCCcC
Confidence            5444443

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=92.86  E-value=0.85  Score=37.48  Aligned_cols=87  Identities=15%  Similarity=0.180  Sum_probs=56.6

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.+-.|...+.+.+.. .++-++.+++.++.+++.|+.+...|+=-.+-.+.+..+.+.+.+-++++.++|++.+.|. 
T Consensus        99 i~~~~sd~~~~~~~~~~-~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-  176 (298)
T 2cw6_A           99 IFGAASELFTKKNINCS-IEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLG-  176 (298)
T ss_dssp             EEEESCHHHHHHHHSCC-HHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEE-
T ss_pred             EEecCCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEec-
Confidence            35555555444455443 4667899999999999999998776653111112222345677778888999999998866 


Q ss_pred             CCCCCCCCHH
Q psy629           85 DDIESEMSEA   94 (166)
Q Consensus        85 DDi~~~~~~~   94 (166)
                      |=++ .+.+.
T Consensus       177 DT~G-~~~P~  185 (298)
T 2cw6_A          177 DTIG-VGTPG  185 (298)
T ss_dssp             ETTS-CCCHH
T ss_pred             CCCC-CcCHH
Confidence            4444 44433

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=92.18  E-value=1.7  Score=35.83  Aligned_cols=55  Identities=22%  Similarity=0.350  Sum_probs=46.7

Q ss_pred             HHHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC
Q psy629           37 AKEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS   92 (166)
Q Consensus        37 a~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~   92 (166)
                      .+..+|.....|.| |-||+|| ++|++.+++-+..+.++|++-|.+-+=+-++...
T Consensus        47 ~~~~~ipv~vMIRPR~GdF~Ys-~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD  102 (256)
T 1twd_A           47 RQRVTIPVHPIIRPRGGDFCYS-DGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD  102 (256)
T ss_dssp             HHHCCSCEEEBCCSSSSCSCCC-HHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBC
T ss_pred             HHHcCCceEEEECCCCCCCcCC-HHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcC
Confidence            34568999999999 8899998 5789999999999999999997776666666554

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=91.66  E-value=0.82  Score=37.36  Aligned_cols=80  Identities=19%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCC
Q psy629           12 YKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEM   91 (166)
Q Consensus        12 pyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~   91 (166)
                      +.|+...-..=.++-++.+++.++.|++.|+...-.|+--.+-.+.+..+.+.+.+-++.+.++|++.++|.  |.-|..
T Consensus       104 ~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~--Dt~G~~  181 (295)
T 1ydn_A          104 EGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLG--DTIGRG  181 (295)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEE--ETTSCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEec--CCCCCc
Confidence            345444333334566899999999999999998744443110011112235667777778889999999987  444444


Q ss_pred             CH
Q psy629           92 SE   93 (166)
Q Consensus        92 ~~   93 (166)
                      .+
T Consensus       182 ~P  183 (295)
T 1ydn_A          182 TP  183 (295)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*

Probab=91.58  E-value=1.9  Score=38.45  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             CCeeeeccCCChhhhhhhcc---CCCHH-----------------HHHHHHHHHHHHHHCCCeEEEEe-cCC--------
Q psy629            1 MDSYLYAPKDDYKHRAYWRD---LYSVE-----------------EAEHLTGLISAAKEQGIDFYYAL-SPG--------   51 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~~Wre---~Yp~~-----------------~l~~l~~L~~~a~~~~v~Fv~ai-sPG--------   51 (166)
                      ||.+.+-..||.    -||-   .||+-                 ..+++++|++.|+++||+++--| .||        
T Consensus       188 lN~lh~HltDdq----~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a  263 (512)
T 1jak_A          188 YNKLHLHLSDDQ----GWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALAS  263 (512)
T ss_dssp             CCEEEEECBCSS----CBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHH
T ss_pred             CcEEEEEeccCC----CceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEccCCCchHHHHHHh
Confidence            799999999985    3552   24432                 13678999999999999999876 222        


Q ss_pred             ---C------------------CCCCCCHHHHHHHHHHHHHHHHcCC-CeeEEecCCCCCCCCHHHHHHHhhHHHHHHHH
Q psy629           52 ---L------------------DITYSSGKEVATLKRKLEQVAQFGC-RGFALLFDDIESEMSEADKEVFQSFAHAQVSV  109 (166)
Q Consensus        52 ---~------------------~~~~s~~~d~~~L~~K~~ql~~lGv-r~FailfDDi~~~~~~~d~~~f~~~a~aq~~l  109 (166)
                         +                  .+|.++++.++-|.+-|+.+.++=. +.|-|--|.+...           ....|..+
T Consensus       264 ypeL~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~Ev~~lFp~~~iHiGgDE~~~~-----------~~~l~~~f  332 (512)
T 1jak_A          264 YAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHST-----------PKADFVAF  332 (512)
T ss_dssp             CGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTCCSSEEECCCCCCTTS-----------CHHHHHHH
T ss_pred             CHHhcCcCCCCccccccCcCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccccc-----------hHHHHHHH
Confidence               1                  2455678889999999999988533 3455556665422           13467777


Q ss_pred             HHHHHHHc
Q psy629          110 TNEVFEHL  117 (166)
Q Consensus       110 ~n~v~~~l  117 (166)
                      +|++.+.+
T Consensus       333 ~~~v~~~v  340 (512)
T 1jak_A          333 MKRVQPIV  340 (512)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877655

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=91.52  E-value=1  Score=37.46  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.+-.|...+.+.+-. .++-++.+++.++.+++.|+.....|+=-.+-.|.+..+.+.+.+-++++.++|++.+.|- 
T Consensus       100 i~~~~sd~~~~~~l~~s-~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-  177 (307)
T 1ydo_A          100 VFMSASETHNRKNINKS-TSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLG-  177 (307)
T ss_dssp             EEEESSHHHHHTTTCSC-HHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEE-
T ss_pred             EEeecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEc-
Confidence            45555555444444432 4566899999999999999987766554222112222345777888888899999998866 


Q ss_pred             CCCCCCCCHH
Q psy629           85 DDIESEMSEA   94 (166)
Q Consensus        85 DDi~~~~~~~   94 (166)
                       |.-|.+.+.
T Consensus       178 -DT~G~~~P~  186 (307)
T 1ydo_A          178 -DTIGAANPA  186 (307)
T ss_dssp             -CSSCCCCHH
T ss_pred             -CCCCCcCHH
Confidence             544444433

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=91.16  E-value=0.9  Score=38.21  Aligned_cols=83  Identities=12%  Similarity=0.020  Sum_probs=58.5

Q ss_pred             eeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEec
Q psy629            5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus         5 iYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~Failf   84 (166)
                      ++.+-.|...+.+.+-. .++.++.+++.++.+++.|..+.+.+.-   +.++...+.+.+.+-++++.++|++.+.  +
T Consensus       115 i~~~~s~~~~~~~~~~s-~~e~l~~~~~~v~~ak~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ga~~i~--l  188 (337)
T 3ble_A          115 LLTKGSLHHLEKQLGKT-PKEFFTDVSFVIEYAIKSGLKINVYLED---WSNGFRNSPDYVKSLVEHLSKEHIERIF--L  188 (337)
T ss_dssp             EEEECSHHHHHHHTCCC-HHHHHHHHHHHHHHHHHTTCEEEEEEET---HHHHHHHCHHHHHHHHHHHHTSCCSEEE--E
T ss_pred             EEEecCHHHHHHHhCCC-HHHHHHHHHHHHHHHHHCCCEEEEEEEE---CCCCCcCCHHHHHHHHHHHHHcCCCEEE--E
Confidence            34555554445555543 4667899999999999999999888763   2122345678889999999999999877  4


Q ss_pred             CCCCCCCCH
Q psy629           85 DDIESEMSE   93 (166)
Q Consensus        85 DDi~~~~~~   93 (166)
                      =|.-+.+.+
T Consensus       189 ~DT~G~~~P  197 (337)
T 3ble_A          189 PDTLGVLSP  197 (337)
T ss_dssp             ECTTCCCCH
T ss_pred             ecCCCCcCH
Confidence            455554444

>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*

Probab=88.04  E-value=3.2  Score=36.92  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             CCeeeeccCCCh----------hhh--hhh--ccCCCHHHHHHHHHHHHHHHHCCCeEEEEe-cCC-----------CC-
Q psy629            1 MDSYLYAPKDDY----------KHR--AYW--RDLYSVEEAEHLTGLISAAKEQGIDFYYAL-SPG-----------LD-   53 (166)
Q Consensus         1 mN~YiYAPKdDp----------yhr--~~W--re~Yp~~~l~~l~~L~~~a~~~~v~Fv~ai-sPG-----------~~-   53 (166)
                      ||.+.+-..||.          .+.  ..|  +..|+.   +++++|++.|+++||+++=-| .||           +. 
T Consensus       182 lN~lh~HltDdq~wr~e~~~~P~Lt~~Ga~~~~~~YT~---~di~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~L~~  258 (507)
T 1now_A          182 FNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTP---NDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLT  258 (507)
T ss_dssp             CCEEEEECCCSSCCCBCCSSCHHHHHHHSSSTTSCBCH---HHHHHHHHHHHHTTCEEEEEEEESSSCTTHHHHSTTCEE
T ss_pred             CcEEEEeeccCccceeeccchhhhhcccCcCCCCCCCH---HHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhCHHhcc
Confidence            788988888883          111  112  445665   568899999999999999887 243           20 


Q ss_pred             --------------CCCCCHHHHHHHHHHHHHHHHcCC-CeeEEecCCCCCC---CCHH-----HHHHH-hhHHHHHHHH
Q psy629           54 --------------ITYSSGKEVATLKRKLEQVAQFGC-RGFALLFDDIESE---MSEA-----DKEVF-QSFAHAQVSV  109 (166)
Q Consensus        54 --------------~~~s~~~d~~~L~~K~~ql~~lGv-r~FailfDDi~~~---~~~~-----d~~~f-~~~a~aq~~l  109 (166)
                                    ++-++++-++-|.+=|+.+.++=. +.|-|--|.+...   .++.     .++.+ .+...+|..+
T Consensus       259 ~~~~~~~~~~~~~~l~p~~~~t~~fl~~v~~Ev~~lFp~~~iHiGgDE~~~~~w~~~p~~~~~~~~~g~~~~~~~l~~~f  338 (507)
T 1now_A          259 PCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFY  338 (507)
T ss_dssp             ECCC----CCSEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEEEECCSCCCHHHHTCHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             cCCCCCCcCCCCcccCCCcHHHHHHHHHHHHHHHHhCCCCeEeecccccccchhhcCHHHHHHHHHcCCCCCHHHHHHHH
Confidence                          233356677777777787777543 5677888988742   1221     11223 3567889999


Q ss_pred             HHHHHHHcCC
Q psy629          110 TNEVFEHLGQ  119 (166)
Q Consensus       110 ~n~v~~~l~~  119 (166)
                      +|++.+.+..
T Consensus       339 ~~~~~~~v~~  348 (507)
T 1now_A          339 IQKVLDIIAT  348 (507)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999877643

>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*

Probab=86.00  E-value=6.8  Score=36.36  Aligned_cols=56  Identities=11%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEecCCC------------------------------CCCCCCHHHHHHHHHHHHHHH-HcCC
Q psy629           29 HLTGLISAAKEQGIDFYYALSPGL------------------------------DITYSSGKEVATLKRKLEQVA-QFGC   77 (166)
Q Consensus        29 ~l~~L~~~a~~~~v~Fv~aisPG~------------------------------~~~~s~~~d~~~L~~K~~ql~-~lGv   77 (166)
                      -|+.|++.+++.|++|+.=+.|++                              -+++++++..+-+.+++..++ +.||
T Consensus       397 Glk~lv~~ih~~Glk~GlW~~P~~v~~~S~l~~~hpdw~~~~~g~~~~~~~~~~~LD~t~Pev~~~i~~~l~~~~~~~GV  476 (732)
T 2xn2_A          397 GLGHFADYVHEQGLKFGLWFEPEMISYESNLYKEHPDYLXHVPGRKPCPSRNQYVLELGRKEVRDNIFEQMVKILDSKKI  476 (732)
T ss_dssp             CHHHHHHHHHHTTCEEEEEECTTEECSSSHHHHHCGGGBCCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHHHHTTSCC
T ss_pred             cHHHHHHHHHHcCCEEEEEeCccccCCCCHHHHhCchheecCCCCCCccCCceEEEcCCCHHHHHHHHHHHHHHHHHcCC
Confidence            599999999999999999999973                              145667777888899988766 8999


Q ss_pred             CeeEEec
Q psy629           78 RGFALLF   84 (166)
Q Consensus        78 r~Failf   84 (166)
                      +.|=+=|
T Consensus       477 D~~K~D~  483 (732)
T 2xn2_A          477 DYIKWDM  483 (732)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9988444

>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}

Probab=84.29  E-value=3.8  Score=35.30  Aligned_cols=60  Identities=25%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------------------
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSPG-------------------------------------------------------   51 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisPG-------------------------------------------------------   51 (166)
                      .++|++||++|+++||+.+.=+-|.                                                       
T Consensus        79 ~~dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~wf~~~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (549)
T 4aie_A           79 MADMDELISKAKEHHIKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPVDEHEPNDLKSAFSGSAWKYDERSGQ  158 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTSTTGGGBCEECCBTTBCSSCCBCTTSSBSEEEETTTTE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECccCCcCCcchhhhhhhcccccccccccccCCcccCCCCCcccccCCCcccccccCCc
Confidence            5789999999999999998766431                                                       


Q ss_pred             ----------CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629           52 ----------LDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE   88 (166)
Q Consensus        52 ----------~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~   88 (166)
                                .++++.+++-.+.++.-+....+.||+-|=  +|=+.
T Consensus       159 ~~~~~f~~~~~dln~~np~v~~~i~~~~~~W~e~gvDGfR--lD~~~  203 (549)
T 4aie_A          159 YYLHFFADQQPDLNWQNTELRQKIYNMMNFWLDKGIGGFR--MDVIE  203 (549)
T ss_dssp             EEECSSCTTSCBBCTTCHHHHHHHHHHHHHHHHTTCCEEE--ETTGG
T ss_pred             eEecccCCCCCccccCCHHHHHHHHHHHHHHHHhcCCcee--EecHH
Confidence                      145666777777888888888899999988  45443

>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...

Probab=81.94  E-value=3.9  Score=34.41  Aligned_cols=24  Identities=8%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      .++|++||++|+++||+.+.=+-|
T Consensus        76 ~~df~~lv~~aH~~Gi~VilD~V~   99 (496)
T 4gqr_A           76 EDEFRNMVTRCNNVGVRIYVDAVI   99 (496)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEcc
Confidence            589999999999999999875533

>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A

Probab=81.92  E-value=15  Score=29.48  Aligned_cols=104  Identities=9%  Similarity=0.051  Sum_probs=57.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCC---CCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHH
Q psy629           21 LYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDI---TYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKE   97 (166)
Q Consensus        21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~---~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~   97 (166)
                      .+.++.++.++++++.|+++|+..+..+|.--..   ...+.+.+..+.+++.+-+.-- .  .|.|+=+..+.+. +.+
T Consensus        65 ~~~~~~l~~~~~~v~~~~~~gi~vild~h~~~~~~g~~~~~~~~~~~~~~~ia~~~~~~-~--~V~~~l~NEP~~~-~~~  140 (305)
T 1h1n_A           65 SPDPNYLADLIATVNAITQKGAYAVVDPHNYGRYYNSIISSPSDFETFWKTVASQFASN-P--LVIFDTDNEYHDM-DQT  140 (305)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTEETTEECCCHHHHHHHHHHHHHTSTTC-T--TEEEECCSCCCSS-CHH
T ss_pred             CcCHHHHHHHHHHHHHHHHCCCEEEEeccccccccCCcCCcHHHHHHHHHHHHHHhCCC-C--eEEEeccCCCCCC-CHH
Confidence            4668899999999999999999999999973211   1223455555555554433321 1  2334433333221 122


Q ss_pred             HHhhHHHHHHHHHHHHHHHcCCCCceEccc-cccc
Q psy629           98 VFQSFAHAQVSVTNEVFEHLGQPKFMLCPT-QYCS  131 (166)
Q Consensus        98 ~f~~~a~aq~~l~n~v~~~l~~~~l~~cPt-~Y~~  131 (166)
                      .   +.....++++.|.+.-+...+++|+. .|++
T Consensus       141 ~---w~~~~~~~~~~IR~~~~~~~~I~v~g~~~~~  172 (305)
T 1h1n_A          141 L---VLNLNQAAIDGIRSAGATSQYIFVEGNSWTG  172 (305)
T ss_dssp             H---HHHHHHHHHHHHHHTTCCSSCEEEECTGGGB
T ss_pred             H---HHHHHHHHHHHHHhcCCCccEEEEccccccC
Confidence            2   22334455566654433245666765 4443

>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase; HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1 b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A* 1we5_A*

Probab=80.01  E-value=24  Score=32.87  Aligned_cols=60  Identities=17%  Similarity=0.287  Sum_probs=46.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCC-----------------------------------CCCCCHHHHHH
Q psy629           20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLD-----------------------------------ITYSSGKEVAT   64 (166)
Q Consensus        20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~-----------------------------------~~~s~~~d~~~   64 (166)
                      +.||.     .++|++.-++.|++++.-|+|+..                                   ++|++++..+-
T Consensus       323 ~~FPd-----p~~mv~~Lh~~G~k~~l~i~P~I~~~s~~y~e~~~~g~~vk~~~G~~~~~~~w~g~~~~~DftnP~a~~w  397 (773)
T 2f2h_A          323 LTFPD-----PEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKW  397 (773)
T ss_dssp             TTCSC-----HHHHHHHHHHTTCEEEEEECSEECTTSTTHHHHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHH
T ss_pred             hhCCC-----HHHHHHHHHHCCCEEEEEecCCcCCCCHHHHHHHHCCceeECCCCCeeeeeecCCCceeeCCCCHHHHHH
Confidence            45664     568888889999999999998521                                   24566777788


Q ss_pred             HHHHHHHHHHcCCCeeEEec
Q psy629           65 LKRKLEQVAQFGCRGFALLF   84 (166)
Q Consensus        65 L~~K~~ql~~lGvr~Failf   84 (166)
                      ...+++.+.+.||+.|-.=+
T Consensus       398 w~~~~~~l~d~Gvd~~w~D~  417 (773)
T 2f2h_A          398 YADKLKGLVAMGVDCFKTDF  417 (773)
T ss_dssp             HHHHHHHHHHTTCCEEEECC
T ss_pred             HHHHHHHHHhcCCCEEEccC
Confidence            88899999999999987533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d2cbia2	317	c.1.8.10 (A:179-495) Hyaluronidase catalytic domai	3e-56
d2choa2	310	c.1.8.10 (A:127-436) Glucosaminidase GH84, catalyt	1e-50

>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 317

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: alpha-D-glucuronidase/Hyaluronidase catalytic domain
domain: Hyaluronidase catalytic domain
species: Clostridium perfringens [TaxId: 1502]

 Score =  177 bits (449), Expect = 3e-56
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 1   MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS-- 58
           +++Y+YAPKDD  HR  WR+ Y   E + +  LI+A+ E  +DF + +SPG+DI +    
Sbjct: 32  LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 91

Query: 59  -GKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
             ++   L  K E +   G R FA+ +DDI+ + +    +V   F    V    +V    
Sbjct: 92  GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 147

Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
                +  PT+Y +   V N +   Y       +   I++MWTGP V
Sbjct: 148 --KPLITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 192

>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: alpha-D-glucuronidase/Hyaluronidase catalytic domain
domain: Glucosaminidase GH84, catalytic domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score =  162 bits (411), Expect = 1e-50
 Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 11/166 (6%)

Query: 1   MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
           M++Y+Y PKDD  H A  WR  Y  +EA  L  L++ A E  +DF +A+ PG DI ++  
Sbjct: 32  MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 90

Query: 60  KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
           ++   L  K E++ Q G R FA+ FDDI  E +   K      A     +  +  +    
Sbjct: 91  EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK-----QAELLNYIDEKFAQVKPD 145

Query: 120 -PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
             + ++CPT+Y  + + P   N  YL TLG KL   I IMWTG +V
Sbjct: 146 INQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d2cbia2	317	Hyaluronidase catalytic domain {Clostridium perfri	100.0
d2choa2	310	Glucosaminidase GH84, catalytic domain {Bacteroide	100.0
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	92.85
d2bhua3	420	Glycosyltrehalose trehalohydrolase, central domain	92.21
d1wzaa2	409	Bacterial alpha-amylase {Halothermothrix orenii [T	92.06
d1zy9a2	348	Alpha-galactosidase GalA catalytic domain {Thermot	90.02
d2f2ha4	338	Putative glucosidase YicI, domain 2 {Escherichia c	89.77
d1jaea2	378	Animal alpha-amylase {Yellow mealworm (Tenebrio mo	88.89
d1g94a2	354	Bacterial alpha-amylase {Pseudoalteromonas halopla	88.54
d1lwha2	391	4-alpha-glucanotransferase {Thermotoga maritima [T	88.11
d1ht6a2	347	Plant alpha-amylase {Barley (Hordeum vulgare), AMY	87.21
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	86.68
d1wkya2	297	Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449	85.74
d1m53a2	478	Isomaltulose synthase PalI {Klebsiella sp., lx3 [T	85.68
d1j0ha3	382	Neopullulanase, central domain {Bacillus stearothe	84.75
d2guya2	381	Fungal alpha-amylases {Aspergillus oryzae, Taka-am	84.54
d1ua7a2	344	Bacterial alpha-amylase {Bacillus subtilis [TaxId:	84.37
d1ceoa_	340	Endoglucanase CelC {Clostridium thermocellum [TaxI	83.74
d1hvxa2	393	Bacterial alpha-amylase {Bacillus stearothermophil	83.19
d1qhoa4	407	Cyclodextrin glycosyltransferase {Bacillus stearot	82.8
d1ulza2	114	Biotin carboxylase (BC), N-terminal domain {Aquife	82.71
d2j9ga2	114	Biotin carboxylase (BC), N-terminal domain {Escher	82.34
d1x7fa2	244	Outer surface protein, N-terminal domain {Bacillus	82.19
d1bqca_	302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	82.16
d1uoka2	479	Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13	81.87
d1r46a2	292	Melibiase {Human (Homo sapiens) [TaxId: 9606]}	81.75
d1h3ga3	422	Cyclomaltodextrinase, central domain {Flavobacteri	81.61
d1h1na_	305	Endocellulase EngI {Thermoascus aurantiacus [TaxId	81.1
d2aama1	285	Hypothetical protein TM1410 {Thermotoga maritima [	80.33
d1hx0a2	403	Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982	80.33
d2d3na2	394	Bacterial alpha-amylase {Bacillus sp. 707 [TaxId:	80.16

>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: alpha-D-glucuronidase/Hyaluronidase catalytic domain
domain: Hyaluronidase catalytic domain
species: Clostridium perfringens [TaxId: 1502]

Probab=100.00  E-value=9.5e-59  Score=395.44  Aligned_cols=154  Identities=33%  Similarity=0.657  Sum_probs=142.3

Q ss_pred             CCeeeeccCCChhhhhhhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC---HHHHHHHHHHHHHHHHcCC
Q psy629            1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSS---GKEVATLKRKLEQVAQFGC   77 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~---~~d~~~L~~K~~ql~~lGv   77 (166)
                      ||+|+||||||||||.+||+|||++|+++|++|+++|+++||+|+||||||++++|++   ++|+++|++||+||+++||
T Consensus        32 mn~YiYAPKdD~~hR~~Wr~~Yp~~~l~~~~~l~~~a~~~~v~fv~~isPGl~~~~~~~~~~~d~~~L~~K~~ql~~~Gv  111 (317)
T d2cbia2          32 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDAGEEDFNHLITKAESLYDMGV  111 (317)
T ss_dssp             CCEEEECCTTCGGGTTTTTSCCCGGGHHHHHHHHHHHHHTTCEEEEEECGGGTCCCSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CcEEEEecCCCHHHHHHhCccCCHHHHHHHHHHHHHHHHcCCeEEEEeCCCCcccccccccHHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999999999999999999999999999999999964   4799999999999999999


Q ss_pred             CeeEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHc----C-CCCceEccccccccccCCCCCChhHHHHHhhccC
Q psy629           78 RGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL----G-QPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLA  152 (166)
Q Consensus        78 r~FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l----~-~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~  152 (166)
                      |+||||||||+...+           .+|++++|++.+++    + ..+|+||||+||.+++.++..+++||++|+++||
T Consensus       112 r~faIlfDDI~~~~~-----------~~~a~~~n~~~~~~~~~~~~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~  180 (317)
T d2cbia2         112 RSFAIYWDDIQDKSA-----------AKHAQVLNRFNEEFVKAKGDVKPLITVPTEYDTGAMVSNGQPRAYTRIFAETVD  180 (317)
T ss_dssp             CEEEEECTTCSSCCH-----------HHHHHHHHHHHHHTHHHHSSCCCCEEECSCCSHHHHEETTEECHHHHHHHHHSC
T ss_pred             CEEEEecccccccch-----------HHHHHHHHHHHHHHHHhcCCCCCeEEeCcccccccccCCCCcHHHHHHHHHhCC
Confidence            999999999997654           46888888887544    3 3579999999999998887788999999999999


Q ss_pred             CCceEEeeCCCCC
Q psy629          153 KEIDIMWTGPKVP  165 (166)
Q Consensus       153 ~~i~i~WTG~~V~  165 (166)
                      ++|.|||||++||
T Consensus       181 ~~i~ifWTG~~VV  193 (317)
T d2cbia2         181 PSIEVMWTGPGVV  193 (317)
T ss_dssp             TTSEEEECSSSSS
T ss_pred             CCCcEEecCCCcc
Confidence            9999999999987

>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: alpha-D-glucuronidase/Hyaluronidase catalytic domain
domain: Glucosaminidase GH84, catalytic domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=100.00  E-value=6.3e-56  Score=376.96  Aligned_cols=153  Identities=41%  Similarity=0.733  Sum_probs=140.5

Q ss_pred             CCeeeeccCCChhhhh-hhccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCe
Q psy629            1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG   79 (166)
Q Consensus         1 mN~YiYAPKdDpyhr~-~Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~   79 (166)
                      ||+|+||||||||||. +||++||++++++|++|+++|+++||+|+||||||++++|++ +|+++|++|++||+++|||+
T Consensus        32 mn~Y~YaPKdD~~hR~~~Wr~~yp~~~~~~~~~l~~~a~~~~i~f~~~isPGld~~~~~-~d~~~L~~K~~ql~~~Gv~~  110 (310)
T d2choa2          32 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK-EDRDLLLAKFEKMYQLGVRS  110 (310)
T ss_dssp             CCEEEECCTTCTTTSTTGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTCCSSH-HHHHHHHHHHHHHHHTTCCE
T ss_pred             CcEEEEccCCChhhChhhhcccCCHHHHHHHHHHHHHHHHcCCeEEEEeCCCccccCCH-HHHHHHHHHHHHHHHcCCCE
Confidence            8999999999999996 899999999999999999999999999999999999999974 79999999999999999999


Q ss_pred             eEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHcCC-----CCceEccccccccccCCCCCChhHHHHHhhccCCC
Q psy629           80 FALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ-----PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKE  154 (166)
Q Consensus        80 FailfDDi~~~~~~~d~~~f~~~a~aq~~l~n~v~~~l~~-----~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~  154 (166)
                      ||||||||++...         .+.+|++++|+|.+++..     .+|+||||+||++++.+   ++.||++|+++||++
T Consensus       111 failfDDI~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~l~~cPt~Y~~~~~~~---~~~Yl~~l~~~L~~~  178 (310)
T d2choa2         111 FAVFFDDISGEGT---------NPQKQAELLNYIDEKFAQVKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPS  178 (310)
T ss_dssp             EEEECCSCCSGGG---------CHHHHHHHHHHHHHHTTTTSSSCCCEEEECSSCSGGGSCT---TSSHHHHHHHHSCTT
T ss_pred             EEEeecccccccc---------hhhhHHHHHHHHHHHHHHhcCCCCceEEeChHHhhccCCC---cHHHHHHHHHhCCcc
Confidence            9999999997754         246789999999887643     36999999999998765   467999999999999


Q ss_pred             ceEEeeCCCCCC
Q psy629          155 IDIMWTGPKVPK  166 (166)
Q Consensus       155 i~i~WTG~~V~~  166 (166)
                      |.|||||++|+.
T Consensus       179 I~ifWTG~~VvS  190 (310)
T d2choa2         179 IQIMWTGDRVIS  190 (310)
T ss_dssp             SEEEECCSSSSC
T ss_pred             ceEEecCCceEC
Confidence            999999999983

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=92.85  E-value=0.58  Score=36.39  Aligned_cols=54  Identities=22%  Similarity=0.360  Sum_probs=45.2

Q ss_pred             HHCCCeEEEEecC-CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCC
Q psy629           38 KEQGIDFYYALSP-GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMS   92 (166)
Q Consensus        38 ~~~~v~Fv~aisP-G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~   92 (166)
                      +..+|.....|.| |-+|.|| ++|++.+++-+..+.++|++-|.+-+=+=++...
T Consensus        47 ~~~~iPv~vMIRPR~GdF~Ys-~~E~~~M~~di~~~k~~G~dGvV~G~L~~dg~iD  101 (247)
T d1twda_          47 QRVTIPVHPIIRPRGGDFCYS-DGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD  101 (247)
T ss_dssp             HHCCSCEEEBCCSSSSCSCCC-HHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBC
T ss_pred             HhcCCCeEEEEecCCCCCCCC-HHHHHHHHHHHHHHHHcCCCeEEEEEECCCCCcc
Confidence            4579999999999 8899997 5789999999999999999997766655555544

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.21  E-value=0.16  Score=40.44  Aligned_cols=56  Identities=18%  Similarity=0.344  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC--------------------------CCCCCCCCHHHHHHHHHHHHHHH-HcCCCe
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP--------------------------GLDITYSSGKEVATLKRKLEQVA-QFGCRG   79 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP--------------------------G~~~~~s~~~d~~~L~~K~~ql~-~lGvr~   79 (166)
                      +++|++|+++|++.||+.+.=+-|                          |.++++.+.+-.+.+++-+.... +.||+-
T Consensus        82 ~~d~~~lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~dlN~~np~v~~~~~~~~~~Wl~~~GVDG  161 (420)
T d2bhua3          82 PEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFDG  161 (420)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHCGGGEEEEEECSSSEEECTTSHHHHHHHHHHHHHHHHHHCCSE
T ss_pred             HHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccccccccChHHHHHHHHHhheeeecccccE
Confidence            578999999999999999999886                          24677888887888888888865 789999


Q ss_pred             eEE
Q psy629           80 FAL   82 (166)
Q Consensus        80 Fai   82 (166)
                      |=+
T Consensus       162 fR~  164 (420)
T d2bhua3         162 LRL  164 (420)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            975

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

Probab=92.06  E-value=0.32  Score=37.77  Aligned_cols=62  Identities=21%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------------------
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSPG-------------------------------------------------------   51 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisPG-------------------------------------------------------   51 (166)
                      .++|++||++|+++||+.+.-+-|.                                                       
T Consensus        81 ~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (409)
T d1wzaa2          81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGY  160 (409)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECS
T ss_pred             HHHHHHHHHHHHhcCCEEEEecccccccccCcchhhhhccccccccccccccccccccCccccCCCcccccccccccccc
Confidence            4689999999999999999888753                                                       


Q ss_pred             -----CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCC
Q psy629           52 -----LDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE   90 (166)
Q Consensus        52 -----~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~   90 (166)
                           .++++.+.+-.+.+++-+....+.||+-|-  +|-+...
T Consensus       161 ~~~~~~dln~~n~~vr~~~~~~~~~wi~~gVDGfR--~D~~~~i  202 (409)
T d1wzaa2         161 FWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFR--LDGAMHI  202 (409)
T ss_dssp             SCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEE--EECCCTT
T ss_pred             CCCCCcccccccHHHHHHHHHHHHHHHHcCCCeec--ccchhhc
Confidence                 135566677888899999988899999888  6666543

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Alpha-galactosidase GalA catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.02  E-value=0.42  Score=37.75  Aligned_cols=58  Identities=14%  Similarity=0.133  Sum_probs=48.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCC----------------------------------CCCCCCHHHHHHH
Q psy629           20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGL----------------------------------DITYSSGKEVATL   65 (166)
Q Consensus        20 e~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~----------------------------------~~~~s~~~d~~~L   65 (166)
                      +.+|     .++.|++..++.|++|+.-++|+.                                  -++++.++..+-+
T Consensus        58 ~~FP-----glk~l~~~~h~~G~k~gl~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~~p~~~~~~  132 (348)
T d1zy9a2          58 GDFP-----SVEEMAKVIAENGFIPGIWTAPFSVSETSDVFNEHPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWL  132 (348)
T ss_dssp             TTCC-----CHHHHHHHHHHTTCEEEEEECTTEEETTCHHHHHCGGGBCEETTEECEEEEETTEEEEEBCTTCHHHHHHH
T ss_pred             ccCc-----CHHHHHHHHHhcCCEEEEEeeeccccCCcHHHHhCccceeccCCCCccccccCCCCeeccCCCcHHHHHHH
Confidence            4677     489999999999999999998863                                  1367777888888


Q ss_pred             HHHHHHHHHcCCCeeEE
Q psy629           66 KRKLEQVAQFGCRGFAL   82 (166)
Q Consensus        66 ~~K~~ql~~lGvr~Fai   82 (166)
                      ...++.+.+.||+-|=+
T Consensus       133 ~~~~~~~~~~Gvd~~K~  149 (348)
T d1zy9a2         133 FDLFSSLRKMGYRYFKI  149 (348)
T ss_dssp             HHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHhcCCCEEEe
Confidence            89999999999999885

>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Putative glucosidase YicI, domain 2
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=3.2  Score=32.06  Aligned_cols=104  Identities=13%  Similarity=0.258  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEecCCCC-----------------------------------CCCCCHHHHHHHHHHHHHHH
Q psy629           29 HLTGLISAAKEQGIDFYYALSPGLD-----------------------------------ITYSSGKEVATLKRKLEQVA   73 (166)
Q Consensus        29 ~l~~L~~~a~~~~v~Fv~aisPG~~-----------------------------------~~~s~~~d~~~L~~K~~ql~   73 (166)
                      ..+++++.-++.|++++.-+.|+.+                                   ++|++++..+-...+++.+.
T Consensus        80 dp~~~i~~l~~~G~~~~l~~~P~i~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~D~tnp~a~~w~~~~~~~~~  159 (338)
T d2f2ha4          80 DPEGMIRRLKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLV  159 (338)
T ss_dssp             CHHHHHHHHHHTTCEEEEEECSEECTTSTTHHHHHHHTCBCBCTTSSBCCBSSSSTTBEEBCTTSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCeEEEeecCccCCCChhHHHHHhCCEEEECCCCCceeeecCCCCccccccCCHHHHHHHHHHhhccc
Confidence            5789999999999999998888321                                   36666777888889999999


Q ss_pred             HcCCCeeEEecCCCC-CCC----CHHHHHHHhhHHHHHHHHHHHHHHHc-CC-CCceEcccccccc
Q psy629           74 QFGCRGFALLFDDIE-SEM----SEADKEVFQSFAHAQVSVTNEVFEHL-GQ-PKFMLCPTQYCST  132 (166)
Q Consensus        74 ~lGvr~FailfDDi~-~~~----~~~d~~~f~~~a~aq~~l~n~v~~~l-~~-~~l~~cPt~Y~~~  132 (166)
                      ++||+.|-+-+-+.. .+.    ...-.+.-...+...++.+-+..+.. +. .++++....|.+.
T Consensus       160 ~~Gidg~w~D~~e~~~~d~~~~~~~~~~~~~n~y~~~~~~~~~~~~~~~~~~~r~~~~~rs~~~Gs  225 (338)
T d2f2ha4         160 AMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGA  225 (338)
T ss_dssp             HTTCCEEEECCCCCCCSSSBCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTCGGGCCEEESCBCTTG
T ss_pred             ccCCceEEecCCCCCCCccccccCcchhhhcchhHHHHHHHHHHHHHHhccccccceeeccccccc
Confidence            999998876444321 100    00011111123334444444433333 22 3477777776654

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

Probab=88.89  E-value=0.71  Score=35.99  Aligned_cols=60  Identities=17%  Similarity=0.308  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecCCC------------------------------------------------------
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSPGL------------------------------------------------------   52 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisPG~------------------------------------------------------   52 (166)
                      .++|++||++|+++||+.+.=+-|.-                                                      
T Consensus        74 ~~df~~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  153 (378)
T d1jaea2          74 ESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGL  153 (378)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTB
T ss_pred             HHHHHHHHHHHHhcCceeeeeecccccccccCCCccccccCCCcccCcCCCCCccccCCCCCcCCCCCcccccccccccc
Confidence            58999999999999999988766521                                                      


Q ss_pred             -CCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q psy629           53 -DITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIE   88 (166)
Q Consensus        53 -~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~   88 (166)
                       ++++++++-.+.|++=+..+.+.||+-|=  ||=+.
T Consensus       154 ~Dln~~np~V~~~l~~~~~~w~e~gvDGfR--~Daa~  188 (378)
T d1jaea2         154 RDLNQGSDYVRGVLIDYMNHMIDLGVAGFR--VDAAK  188 (378)
T ss_dssp             CBBCTTSHHHHHHHHHHHHHHHHTTCCEEE--ETTGG
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhCCCcee--eeeec
Confidence             24556677778888888889999999877  45443

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

Probab=88.54  E-value=0.56  Score=36.27  Aligned_cols=55  Identities=16%  Similarity=0.358  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC---CC---------------------------------------------------
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP---GL---------------------------------------------------   52 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP---G~---------------------------------------------------   52 (166)
                      .++|++||++|+++||+.+.=+-+   |.                                                   
T Consensus        64 ~~dfk~LV~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  143 (354)
T d1g94a2          64 RAQFIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPIYSPQDFHESCTINNSDYGNDRYRVQNCELVGLA  143 (354)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECSEECSSCEEBTTSCEEBTTBCSSCCGGGBCCCCBCCTTHHHHCHHHHHHSBSTTCE
T ss_pred             HHHHHHHHHHHhccCceeEEEeeccccccccCCCcccccccccCCCcCCccccccCCCCCCccccccccceeccccCCCC
Confidence            578999999999999999876644   10                                                   


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCCeeE
Q psy629           53 DITYSSGKEVATLKRKLEQVAQFGCRGFA   81 (166)
Q Consensus        53 ~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa   81 (166)
                      ++++.+++-.+.|+.-+..+.+.||.-|=
T Consensus       144 dln~~n~~Vr~~l~d~~~~~~e~gvdGfR  172 (354)
T d1g94a2         144 DLDTASNYVQNTIAAYINDLQAIGVKGFR  172 (354)
T ss_dssp             EBCTTSHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhhhccchhh
Confidence            24455667778888889999999999885

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.11  E-value=0.89  Score=35.22  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      .++|++|+++|+++||+.+.-+-|
T Consensus        69 ~~d~~~lv~~~h~~gi~VilD~V~   92 (391)
T d1lwha2          69 EREFKEMIEAFHDSGIKVVLDLPI   92 (391)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             HHHHHHHHHHHHhcCCEEeecccc
Confidence            478999999999999999998864

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

Probab=87.21  E-value=0.5  Score=35.61  Aligned_cols=61  Identities=21%  Similarity=0.225  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHCCCeEEEEecC---C---------------------------------------------------
Q psy629           26 EAEHLTGLISAAKEQGIDFYYALSP---G---------------------------------------------------   51 (166)
Q Consensus        26 ~l~~l~~L~~~a~~~~v~Fv~aisP---G---------------------------------------------------   51 (166)
                      ..++|++|+++|+++||+.+.=+-|   +                                                   
T Consensus        67 ~~~~f~~lv~~~H~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (347)
T d1ht6a2          67 NAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAA  146 (347)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSBCCCSEECTTSCEEECCCSSSSSTTCCCGGGBCTTCTTTCCSCSCCCSSCCCTT
T ss_pred             CHHHHHHHHHHHhhcceEEeeeccccccCCCCcccccccccccCCCCCCCcCcCccccCCCcccccccccccccccccCC
Confidence            3578999999999999999988865   1                                                   


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHH-HcCCCeeEEecCCCC
Q psy629           52 -LDITYSSGKEVATLKRKLEQVA-QFGCRGFALLFDDIE   88 (166)
Q Consensus        52 -~~~~~s~~~d~~~L~~K~~ql~-~lGvr~FailfDDi~   88 (166)
                       .++++.+.+-.+.|++-+.... +.||+-|=  +|-+.
T Consensus       147 ~pdln~~n~~v~~~l~~~~~~wi~~~gvDGfR--~D~~~  183 (347)
T d1ht6a2         147 APDIDHLNDRVQRELKEWLLWLKSDLGFDAWR--LDFAR  183 (347)
T ss_dssp             SCBBCTTCHHHHHHHHHHHHHHHHHHCCCEEE--ETTGG
T ss_pred             CCcccccchhhhhhhhhhhhhhcccCCcceEE--Eechh
Confidence             1345666677778888888776 79999887  55444

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=86.68  E-value=1.2  Score=32.39  Aligned_cols=118  Identities=13%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             HHHHHCCCeEEEEecC--CCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHHHHHHhhHHHHH------
Q psy629           35 SAAKEQGIDFYYALSP--GLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQ------  106 (166)
Q Consensus        35 ~~a~~~~v~Fv~aisP--G~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d~~~f~~~a~aq------  106 (166)
                      ...+++++.+++--.+  +....+=...+.+....-.+.|.+.|.|.++++.-+-........+..+-.-+..+      
T Consensus        76 ~~l~~~~~pvv~~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  155 (275)
T d2nzug1          76 EELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVR  155 (275)
T ss_dssp             HHHHHCSSCEEEESCCCTTCCSCEEEECHHHHHHHHHHHHHHTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCC
T ss_pred             HHHhhccccccccccccccccccccccccccchhHHHHHHHHhcccceEEEecCcccchhhhHHHHHHHHHHHHcCCCCC
Confidence            3455677776665433  22221111233455555677899999999999975544322211111111001100      


Q ss_pred             --------------HHHHHHHHHHcCCCCceEccccccccccCCCCCChhHHHHHhhccCCCceEE
Q psy629          107 --------------VSVTNEVFEHLGQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIM  158 (166)
Q Consensus       107 --------------~~l~n~v~~~l~~~~l~~cPt~Y~~~~~~~~~~~~~Yl~~l~~~L~~~i~i~  158 (166)
                                    ...+.++......+.-+||...+..-.      --.+++++|-.+|++|.|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~A~g------~~~~l~~~g~~ip~di~vi  215 (275)
T d2nzug1         156 DSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALG------VIHGAQDRGLNVPNDLEII  215 (275)
T ss_dssp             GGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHH------HHHHHHTTTCCTTTTCEEE
T ss_pred             cceEEeccCCHHHHHHHHHHHHhcCCCCeEEEecChHHHHH------HHHHHhhcCCCCCccceee
Confidence                          122233333333455788877765432      2467888888888998886

>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Bacillus sp. JAMB-602 [TaxId: 244966]

Probab=85.74  E-value=2.1  Score=31.79  Aligned_cols=56  Identities=11%  Similarity=0.092  Sum_probs=42.2

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHc
Q psy629           18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQF   75 (166)
Q Consensus        18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~l   75 (166)
                      |...|+++.++.|+++++.|.++|+..+.-+|-..  .+......+...+...++.+.
T Consensus        55 ~~~~~~~~~~~~ld~~v~~a~~~Gi~vildlh~~~--~~~~~~~~~~~~~~w~~~a~~  110 (297)
T d1wkya2          55 DGGQWTKDDIQTVRNLISLAEDNNLVAVLEVHDAT--GYDSIASLNRAVDYWIEMRSA  110 (297)
T ss_dssp             CSSSSCCCCHHHHHHHHHHHHHTTCEEEEEECTTT--TCCCHHHHHHHHHHHHHTGGG
T ss_pred             CCCccCccHHHHHHHHHHHHHHCCCceEeeccccc--cccccccHHHHHHHHHHHHHH
Confidence            44667778899999999999999999999998532  233456667777777776653

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

Probab=85.68  E-value=1.3  Score=35.05  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------------------
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSPG-------------------------------------------------------   51 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisPG-------------------------------------------------------   51 (166)
                      .++|++||++|+++||+.+.=+-|.                                                       
T Consensus        78 ~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (478)
T d1m53a2          78 MEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQ  157 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCC
T ss_pred             HHHHHHHHHHHHHCCCEEEeccccccccccCchhhhcccCCCCCccccccccCCCcCCCCccccccCCCCccccccccCc
Confidence            5789999999999999999988551                                                       


Q ss_pred             ----------CCCCCCCHHHHHHHHHHHHHHHHcCCCeeEE
Q psy629           52 ----------LDITYSSGKEVATLKRKLEQVAQFGCRGFAL   82 (166)
Q Consensus        52 ----------~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai   82 (166)
                                .++++.+.+-.+.|+.-+....+.||+-|=+
T Consensus       158 ~~~~~~~~~~~dln~~~~~V~~~i~~~~~~w~e~gvDGfR~  198 (478)
T d1m53a2         158 YYLHYFARQQPDLNWDNPKVREDLYAMLRFWLDKGVSGMRF  198 (478)
T ss_dssp             EEECSSCTTCCBBCTTSHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             ccccCcCCCCCcccchhHHHHHHHHHHHHHHHhcCCceecc
Confidence                      1344556666777888888888999998874

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.75  E-value=1.7  Score=33.43  Aligned_cols=61  Identities=18%  Similarity=0.188  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------------CCCCCC
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSPG-------------------------------------------------LDITYS   57 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisPG-------------------------------------------------~~~~~s   57 (166)
                      .++|++|+++|+++||+.+.=+-|.                                                 .++++.
T Consensus        99 ~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~  178 (382)
T d1j0ha3          99 KETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTA  178 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSSCSBCBSTTCTTSBBBCTT
T ss_pred             HHHHHHHHHHhhhccceEEEEeeecccccccccchhhhccCCccccCCccccccccccccccccccccccCCCCcccccC
Confidence            5789999999999999999987431                                                 135666


Q ss_pred             CHHHHHHHHHHHHHHH-HcCCCeeEEecCCCCC
Q psy629           58 SGKEVATLKRKLEQVA-QFGCRGFALLFDDIES   89 (166)
Q Consensus        58 ~~~d~~~L~~K~~ql~-~lGvr~FailfDDi~~   89 (166)
                      +++-.+.|++=+.... +.||+-|=  +|=+..
T Consensus       179 n~~vr~~l~~~~~~wi~~~giDGfR--~Da~~~  209 (382)
T d1j0ha3         179 NPEVKRYLLDVATYWIREFDIDGWR--LDVANE  209 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCCEEE--ETTGGG
T ss_pred             hHHHHHHHHHHHHhHhhhccccEEE--ecchhh
Confidence            6666677777777755 68999875  454443

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

Probab=84.54  E-value=1.4  Score=34.36  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHCCCeEEEEecC
Q psy629           26 EAEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        26 ~l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      ..++|++||++|+++||+.+.=+-|
T Consensus        96 t~~dfk~lv~~~H~~Gi~VilD~V~  120 (381)
T d2guya2          96 TADDLKALSSALHERGMYLMVDVVA  120 (381)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHhhccceeeeccc
Confidence            3589999999999999999998865

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

Probab=84.37  E-value=1.7  Score=33.75  Aligned_cols=56  Identities=25%  Similarity=0.315  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC---CC----------------------------------------CCCCCCHHHHH
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP---GL----------------------------------------DITYSSGKEVA   63 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP---G~----------------------------------------~~~~s~~~d~~   63 (166)
                      .++|++||++|+++||+.+.=+-|   |.                                        |+++.+++-.+
T Consensus        74 ~~df~~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~np~Vr~  153 (344)
T d1ua7a2          74 EQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQS  153 (344)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSCHHHHTSTTCEEECCBCCCTTCHHHHHHSBBTTBCEECTTSHHHHH
T ss_pred             HHHHHHHHHHhcccceeEeeccceeeecCCCchhhccccCCcccccCCCCCCCCCCCcCcccCccccCCccccCChHHHH
Confidence            478999999999999999988754   10                                        14555666667


Q ss_pred             HHHHHHHHHHHcCCCeeEE
Q psy629           64 TLKRKLEQVAQFGCRGFAL   82 (166)
Q Consensus        64 ~L~~K~~ql~~lGvr~Fai   82 (166)
                      .|++=+....+.||+-|=+
T Consensus       154 ~l~~~~~~w~~~giDGfR~  172 (344)
T d1ua7a2         154 YLKRFLERALNDGADGFRF  172 (344)
T ss_dssp             HHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEE
Confidence            7888888888999998753

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelC
species: Clostridium thermocellum [TaxId: 1515]

Probab=83.74  E-value=3.3  Score=31.74  Aligned_cols=29  Identities=7%  Similarity=0.132  Sum_probs=26.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCeEEEEec
Q psy629           21 LYSVEEAEHLTGLISAAKEQGIDFYYALS   49 (166)
Q Consensus        21 ~Yp~~~l~~l~~L~~~a~~~~v~Fv~ais   49 (166)
                      .|.++.++.|.++++.|+++|+..+..+|
T Consensus        62 ~~~~~~~~~ld~~v~~a~~~gi~vild~H   90 (340)
T d1ceoa_          62 EYKEDGLSYIDRCLEWCKKYNLGLVLDMH   90 (340)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence            46778899999999999999999999997

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.19  E-value=5.2  Score=30.78  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      .++|++||++|+++||+.+.=+-|
T Consensus        81 ~~df~~LV~~aH~~GIkVIlDvV~  104 (393)
T d1hvxa2          81 KAQYLQAIQAAHAAGMQVYADVVF  104 (393)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEec
Confidence            578999999999999999887766

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=82.80  E-value=1.8  Score=33.77  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEec
Q psy629           27 AEHLTGLISAAKEQGIDFYYALS   49 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~ais   49 (166)
                      .++|++||++|+++||+.+.=+-
T Consensus       107 ~~d~k~Lv~~~H~~Gi~VilD~V  129 (407)
T d1qhoa4         107 WTTFDTLVNDAHQNGIKVIVDFV  129 (407)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHHHHhhhcccceeeccc
Confidence            57899999999999999998653

>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.71  E-value=0.76  Score=31.64  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=29.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHH
Q psy629           23 SVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLK   66 (166)
Q Consensus        23 p~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~   66 (166)
                      |.+---....+++.|+++|++   +||||..+- |.+.++...+
T Consensus        55 ~~~sYln~~~Ii~~A~~~~~d---aihPGyGFL-SEna~Fa~~~   94 (114)
T d1ulza2          55 PLDTYLNKQRIINLALEVGAD---AIHPGYGFL-AENAEFAKMC   94 (114)
T ss_dssp             TTHHHHCHHHHHHHHHHTTCC---EEECCSSTT-TTCHHHHHHH
T ss_pred             hhhhhhcHHHHHHHHHHhCCC---eEecchhhh-hhHHHHHHHH
Confidence            444455688999999999999   899998864 4445565543

>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.34  E-value=0.68  Score=31.89  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHH
Q psy629           28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLK   66 (166)
Q Consensus        28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~   66 (166)
                      -...++++.|+++|++   |||||..+- |.+.++...+
T Consensus        61 l~~~~Ii~~A~~~~~d---AiHPGyGFL-SEn~~Fa~~~   95 (114)
T d2j9ga2          61 LNIPAIISAAEITGAV---AIHPGYGFL-SENANFAEQV   95 (114)
T ss_dssp             TCHHHHHHHHHHHTCS---EEECCSSTT-TTCHHHHHHH
T ss_pred             cCHHHHHHHHHHhCCc---eeecchhhh-hhhHHHHHHH
Confidence            4588999999999999   899998864 4345555443

>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Outer surface protein, N-terminal domain
domain: Outer surface protein, N-terminal domain
species: Bacillus cereus [TaxId: 1396]

Probab=82.19  E-value=1.2  Score=34.41  Aligned_cols=50  Identities=26%  Similarity=0.518  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHCCCeEEEEecCCC----CCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCC
Q psy629           25 EEAEHLTGLISAAKEQGIDFYYALSPGL----DITYSSGKEVATLKRKLEQVAQFGCRGFALLFDD   86 (166)
Q Consensus        25 ~~l~~l~~L~~~a~~~~v~Fv~aisPG~----~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDD   86 (166)
                      +..+++++|++.|++.|++.+.=|||..    .+.+.+          +..+.++||..+=  +|+
T Consensus        47 ~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~d----------l~~~~~lGi~glR--lD~  100 (244)
T d1x7fa2          47 EIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSD----------LSFFAELGADGIR--LDV  100 (244)
T ss_dssp             ---HHHHHHHHHHHHTTCEEEEEECTTCC------CCC----------THHHHHHTCSEEE--ESS
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHH----------HHHHHHCCCCEEE--EcC
Confidence            3468899999999999999999999943    333332          3566788988644  554

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Thermomonospora fusca [TaxId: 2021]

Probab=82.16  E-value=2.8  Score=31.18  Aligned_cols=33  Identities=12%  Similarity=0.098  Sum_probs=29.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHCCCeEEEEecC
Q psy629           18 WRDLYSVEEAEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        18 Wre~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      |...|+.+.++.+.++++.|.++|+..+.-+|-
T Consensus        55 ~~~~~~~~~~~~~~~~v~~a~~~Gi~vildlh~   87 (302)
T d1bqca_          55 NGVRWSKNGPSDVANVISLCKQNRLICMLEVHD   87 (302)
T ss_dssp             CSSSSCCCCHHHHHHHHHHHHHTTCEEEEEEGG
T ss_pred             cccccCcchHHHHHHHHHHHHHCCCEEEEEecc
Confidence            556788888999999999999999999999984

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

Probab=81.87  E-value=3.1  Score=32.75  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      .++|++||++|+++||+.+.=+-+
T Consensus        78 ~~df~~Lv~~aH~~Gi~VilD~V~  101 (479)
T d1uoka2          78 MEDWDELLHEMHERNMKLMMDLVV  101 (479)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEecccc
Confidence            578999999999999999887643

>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Melibiase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=2.1  Score=32.17  Aligned_cols=61  Identities=11%  Similarity=0.125  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCC
Q psy629           28 EHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESE   90 (166)
Q Consensus        28 ~~l~~L~~~a~~~~v~Fv~aisPG~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~   90 (166)
                      .-|+.|++..++.|++|++=+.||...+-+....+.-+..=++.+.+-||+-+=  +|-+...
T Consensus        84 ~Gl~~l~~~i~~~G~~~Giw~~~~~~~~~~~p~~~~~~~~~~~~~~~~GvdyvK--~D~~~~~  144 (292)
T d1r46a2          84 HGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLK--FDGCYCD  144 (292)
T ss_dssp             THHHHHHHHHHHTTCEEEEEEESSSBCTTSSBCCTTTHHHHHHHHHHHTCCEEE--EECCSCS
T ss_pred             CccHHHHHHHHhcCceecccCCCccccCCCCccHHHHHHHHHHHHHHcCCCeec--cCCCCCC
Confidence            369999999999999999999999876655432222222234456788999887  4544443

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

Probab=81.61  E-value=2.3  Score=33.01  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------------------
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSPG-------------------------------------------------------   51 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisPG-------------------------------------------------------   51 (166)
                      .++|++||++|+++||+.+.=+-|.                                                       
T Consensus       103 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (422)
T d1h3ga3         103 NEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQHHRVAVQDPYAAQADSENFTKGWFVEG  182 (422)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGGSCSSTTSBSCCSSCCBCCCCGGGGSCTTCCHHHHHHHHHSBSSTT
T ss_pred             HHHHHHHHHHHHHhCccccccCccccccccchhhccccccccccccccccccccccccccccccccCcccceeecccccC
Confidence            4789999999999999999998652                                                       


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHHH-cCCCeeEEecCCCC
Q psy629           52 -LDITYSSGKEVATLKRKLEQVAQ-FGCRGFALLFDDIE   88 (166)
Q Consensus        52 -~~~~~s~~~d~~~L~~K~~ql~~-lGvr~FailfDDi~   88 (166)
                       .++++.+.+-.+.++.-+....+ .||+-|=  +|-+.
T Consensus       183 ~~dln~~n~~vr~~~~~~~~~w~~~~gvDGfR--~Da~~  219 (422)
T d1h3ga3         183 MPDLNQTNPLVANYLIQNNIWWIEYAGLSGLR--IDTYG  219 (422)
T ss_dssp             SCBBCTTSHHHHHHHHHHHHHHHHHHTCSEEE--ETTGG
T ss_pred             ccccccccHHHHHHHhhhHHHHhhheeeeeee--ecccc
Confidence             03455566667778888887766 7999876  45443

>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase EngI
species: Thermoascus aurantiacus [TaxId: 5087]

Probab=81.10  E-value=3.7  Score=31.32  Aligned_cols=106  Identities=8%  Similarity=0.040  Sum_probs=61.0

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHCCCeEEEEecCCCCC---CCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCHHH
Q psy629           19 RDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDI---TYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEAD   95 (166)
Q Consensus        19 re~Yp~~~l~~l~~L~~~a~~~~v~Fv~aisPG~~~---~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~d   95 (166)
                      ...++++.++.|+++++.|.++|+..+.-+|-....   ..++.+.+..+-+++.+-+. +-..  |.||=+..+.. ..
T Consensus        63 ~~~~~~~~~~~l~~~v~~a~~~gl~vIlD~H~~~~~~~~~~~~~~~~~~~W~~ia~~~~-~~~~--v~~el~NEP~~-~~  138 (305)
T d1h1na_          63 TGSPDPNYLADLIATVNAITQKGAYAVVDPHNYGRYYNSIISSPSDFETFWKTVASQFA-SNPL--VIFDTDNEYHD-MD  138 (305)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTEETTEECCCHHHHHHHHHHHHHTST-TCTT--EEEECCSCCCS-SC
T ss_pred             CCccCHHHHHHHHHHHHHHHhcCCeEEEecccCCcccccccccHHHHHHHHHHHHHHhC-CCCe--eEEEeccCCCC-cc
Confidence            445788999999999999999999999999984321   22345666666666655443 2222  34643443321 11


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHcCCCCceEcc-ccccc
Q psy629           96 KEVFQSFAHAQVSVTNEVFEHLGQPKFMLCP-TQYCS  131 (166)
Q Consensus        96 ~~~f~~~a~aq~~l~n~v~~~l~~~~l~~cP-t~Y~~  131 (166)
                      .+   .+.....++++.|.+.-+...+++++ ..|+.
T Consensus       139 ~~---~w~~~~~~~~~~IR~~~~~~~~i~v~~~~~~~  172 (305)
T d1h1na_         139 QT---LVLNLNQAAIDGIRSAGATSQYIFVEGNSWTG  172 (305)
T ss_dssp             HH---HHHHHHHHHHHHHHHTTCCSSCEEEECTGGGB
T ss_pred             HH---HHHHHHHHHHHHHHhcCCCCCEEEECCCcccc
Confidence            11   12233444556665543333445444 44443

>d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: TM1410-like
domain: Hypothetical protein TM1410
species: Thermotoga maritima [TaxId: 2336]

Probab=80.33  E-value=0.5  Score=37.09  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCCCCH--HHHHHHhhHHHHHHHHHHHHHHHcCC--CCceEcc
Q psy629           54 ITYSSGKEVATLKRKLEQVAQFGCRGFALLFDDIESEMSE--ADKEVFQSFAHAQVSVTNEVFEHLGQ--PKFMLCP  126 (166)
Q Consensus        54 ~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~--~d~~~f~~~a~aq~~l~n~v~~~l~~--~~l~~cP  126 (166)
                      +++++++=.+.|.++++++.+.|++  ||++|.+++-..-  .+...+...+.+|+.++.+|.++...  +.+.+|+
T Consensus       100 vd~~~~~w~~il~~ri~~~~~~GfD--GvflD~lD~y~~~~~~~~~~~~~~~~~m~~~v~~I~~~~r~~~P~~~ii~  174 (285)
T d2aama1         100 VKYWYNEWKEIVFSYLDRVIDQGFK--GIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLIIP  174 (285)
T ss_dssp             ECTTSHHHHHHHHHHHHHHHHTTCS--EEEEECTTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EecCcHHHHHHHHHHHHHHHHcCCC--eEEecccchhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            3555555567788999999999999  5669998853210  11112334556778888777655532  2355444

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.33  E-value=2.7  Score=32.64  Aligned_cols=24  Identities=8%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      .++|++||++|+++||+.+.=+=+
T Consensus        76 ~~dfk~Lv~~aH~~GI~VIlDvV~   99 (403)
T d1hx0a2          76 ENEFRDMVTRCNNVGVRIYVDAVI   99 (403)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCEEEEEEec
Confidence            579999999999999999987633

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

Probab=80.16  E-value=6.4  Score=30.18  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHCCCeEEEEecC
Q psy629           27 AEHLTGLISAAKEQGIDFYYALSP   50 (166)
Q Consensus        27 l~~l~~L~~~a~~~~v~Fv~aisP   50 (166)
                      .++|++||++|+++||+.+.=+-|
T Consensus        78 ~~df~~Lv~~aH~~GIkVilDvV~  101 (394)
T d2d3na2          78 RSQLQAAVTSLKNNGIQVYGDVVM  101 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEec
Confidence            578999999999999999876644